Multiple sequence alignment - TraesCS1A01G429400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G429400 chr1A 100.000 5357 0 0 1 5357 582712979 582707623 0.000000e+00 9893.0
1 TraesCS1A01G429400 chr1A 86.222 675 57 21 3925 4578 583126746 583127405 0.000000e+00 699.0
2 TraesCS1A01G429400 chr1A 87.778 90 6 3 4837 4925 583127821 583127906 3.410000e-17 100.0
3 TraesCS1A01G429400 chr1D 93.287 3039 154 22 1729 4731 485509245 485506221 0.000000e+00 4436.0
4 TraesCS1A01G429400 chr1D 79.389 786 73 45 908 1652 485510270 485509533 6.280000e-129 472.0
5 TraesCS1A01G429400 chr1B 93.345 2194 106 15 1821 3994 675868965 675866792 0.000000e+00 3206.0
6 TraesCS1A01G429400 chr1B 88.723 736 44 15 4002 4705 675866716 675865988 0.000000e+00 863.0
7 TraesCS1A01G429400 chr1B 84.414 725 56 30 977 1657 675869797 675869086 0.000000e+00 660.0
8 TraesCS1A01G429400 chr1B 90.664 482 31 6 1966 2443 21981673 21982144 3.520000e-176 628.0
9 TraesCS1A01G429400 chr1B 82.679 560 62 20 915 1452 675927944 675927398 1.050000e-126 464.0
10 TraesCS1A01G429400 chr1B 85.755 351 23 12 867 1191 675878106 675877757 3.970000e-91 346.0
11 TraesCS1A01G429400 chr1B 81.364 440 50 20 4159 4578 676146261 676146688 4.000000e-86 329.0
12 TraesCS1A01G429400 chr1B 90.952 210 17 2 5148 5357 675828134 675827927 1.140000e-71 281.0
13 TraesCS1A01G429400 chr1B 83.140 344 21 11 235 575 675878694 675878385 4.090000e-71 279.0
14 TraesCS1A01G429400 chr1B 92.347 196 13 1 4906 5099 675864386 675864191 1.470000e-70 278.0
15 TraesCS1A01G429400 chr1B 84.170 259 35 5 5102 5357 676121795 676121540 4.140000e-61 246.0
16 TraesCS1A01G429400 chr1B 94.558 147 6 2 1 146 675879007 675878862 5.400000e-55 226.0
17 TraesCS1A01G429400 chr1B 86.139 202 12 6 3664 3850 676122759 676122959 2.530000e-48 204.0
18 TraesCS1A01G429400 chr1B 91.667 108 7 2 5102 5207 675864065 675863958 1.200000e-31 148.0
19 TraesCS1A01G429400 chr1B 88.119 101 7 3 4024 4119 676146151 676146251 1.220000e-21 115.0
20 TraesCS1A01G429400 chr1B 95.000 60 3 0 5148 5207 675860078 675860019 1.590000e-15 95.3
21 TraesCS1A01G429400 chr1B 95.000 60 3 0 5148 5207 675861097 675861038 1.590000e-15 95.3
22 TraesCS1A01G429400 chr1B 86.667 90 7 2 4837 4925 676147082 676147167 1.590000e-15 95.3
23 TraesCS1A01G429400 chr1B 93.333 60 4 0 5148 5207 675828204 675828145 7.390000e-14 89.8
24 TraesCS1A01G429400 chr1B 93.333 60 4 0 5148 5207 675861027 675860968 7.390000e-14 89.8
25 TraesCS1A01G429400 chr1B 93.333 60 4 0 5148 5207 675863877 675863818 7.390000e-14 89.8
26 TraesCS1A01G429400 chr1B 92.982 57 4 0 5151 5207 675863944 675863888 3.440000e-12 84.2
27 TraesCS1A01G429400 chr2A 85.072 690 79 16 2103 2781 93884376 93883700 0.000000e+00 682.0
28 TraesCS1A01G429400 chr2A 84.594 357 25 13 2857 3186 93883695 93883342 1.440000e-85 327.0
29 TraesCS1A01G429400 chr2A 92.233 103 5 3 1021 1121 767986660 767986761 5.590000e-30 143.0
30 TraesCS1A01G429400 chr3B 96.098 410 15 1 2342 2750 550393873 550393464 0.000000e+00 667.0
31 TraesCS1A01G429400 chr3B 91.007 278 15 3 1589 1864 550394150 550393881 3.050000e-97 366.0
32 TraesCS1A01G429400 chr7B 95.610 410 17 1 2342 2750 615405769 615405360 0.000000e+00 656.0
33 TraesCS1A01G429400 chr7B 90.055 181 12 2 1686 1864 615405953 615405777 4.170000e-56 230.0
34 TraesCS1A01G429400 chr4A 90.638 470 30 8 1978 2443 657597894 657597435 3.550000e-171 612.0
35 TraesCS1A01G429400 chr4B 90.638 470 29 7 1978 2443 204770593 204770135 1.280000e-170 610.0
36 TraesCS1A01G429400 chr4B 89.362 470 36 6 1978 2443 219519984 219519525 3.600000e-161 579.0
37 TraesCS1A01G429400 chr4B 79.389 524 57 24 1231 1727 204771413 204770914 6.690000e-84 322.0
38 TraesCS1A01G429400 chr2D 82.297 418 59 13 3510 3920 185386256 185386665 1.100000e-91 348.0
39 TraesCS1A01G429400 chr2D 93.878 98 3 3 1027 1121 643007099 643007196 1.560000e-30 145.0
40 TraesCS1A01G429400 chr2D 89.873 79 8 0 1043 1121 643081985 643082063 9.490000e-18 102.0
41 TraesCS1A01G429400 chr2D 92.982 57 3 1 562 617 645989517 645989461 1.240000e-11 82.4
42 TraesCS1A01G429400 chr3D 95.312 64 2 1 555 617 359672339 359672402 3.410000e-17 100.0
43 TraesCS1A01G429400 chr7D 92.727 55 3 1 562 615 479291489 479291543 1.600000e-10 78.7
44 TraesCS1A01G429400 chr3A 88.000 50 5 1 569 617 125500554 125500603 2.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G429400 chr1A 582707623 582712979 5356 True 9893.000000 9893 100.000000 1 5357 1 chr1A.!!$R1 5356
1 TraesCS1A01G429400 chr1A 583126746 583127906 1160 False 399.500000 699 87.000000 3925 4925 2 chr1A.!!$F1 1000
2 TraesCS1A01G429400 chr1D 485506221 485510270 4049 True 2454.000000 4436 86.338000 908 4731 2 chr1D.!!$R1 3823
3 TraesCS1A01G429400 chr1B 675860019 675869797 9778 True 560.940000 3206 92.014400 977 5207 10 chr1B.!!$R4 4230
4 TraesCS1A01G429400 chr1B 675927398 675927944 546 True 464.000000 464 82.679000 915 1452 1 chr1B.!!$R1 537
5 TraesCS1A01G429400 chr1B 675877757 675879007 1250 True 283.666667 346 87.817667 1 1191 3 chr1B.!!$R5 1190
6 TraesCS1A01G429400 chr2A 93883342 93884376 1034 True 504.500000 682 84.833000 2103 3186 2 chr2A.!!$R1 1083
7 TraesCS1A01G429400 chr3B 550393464 550394150 686 True 516.500000 667 93.552500 1589 2750 2 chr3B.!!$R1 1161
8 TraesCS1A01G429400 chr7B 615405360 615405953 593 True 443.000000 656 92.832500 1686 2750 2 chr7B.!!$R1 1064
9 TraesCS1A01G429400 chr4B 204770135 204771413 1278 True 466.000000 610 85.013500 1231 2443 2 chr4B.!!$R2 1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 970 0.035439 TCCGCTAAAGGCCCAAAGAG 60.035 55.000 0.00 0.0 37.74 2.85 F
1202 1434 0.118144 AGCATCTCCCCCTATCTCCC 59.882 60.000 0.00 0.0 0.00 4.30 F
1376 1628 0.243907 GTGCTGCTCGTCCTTGACTA 59.756 55.000 0.00 0.0 0.00 2.59 F
1918 2448 0.331278 TATCCTGCAAAGGGTGGTGG 59.669 55.000 0.00 0.0 0.00 4.61 F
1936 2466 0.391263 GGTGTCTAAAGCTGGTCGGG 60.391 60.000 0.00 0.0 0.00 5.14 F
1976 2547 0.523335 GATCGTGATTTGTTGGCCGC 60.523 55.000 0.00 0.0 0.00 6.53 F
2781 3375 0.690762 TGGTTCTGGTTGCTCCTACC 59.309 55.000 0.00 0.0 37.07 3.18 F
3512 4136 1.374758 AGTTGCTGCGCTACCTGTC 60.375 57.895 9.73 0.0 35.09 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2181 0.176680 ACAAGCGTATCTGGAGCCTG 59.823 55.000 0.00 0.0 0.00 4.85 R
2202 2779 2.358737 CCCCGCACAGTGGAAGAC 60.359 66.667 1.84 0.0 34.74 3.01 R
3217 3838 0.257039 ATCAACAGGGTCATCAGGGC 59.743 55.000 0.00 0.0 0.00 5.19 R
3255 3876 1.335872 GGTTTCTTCATGCACAACGGG 60.336 52.381 0.00 0.0 0.00 5.28 R
3256 3877 1.336440 TGGTTTCTTCATGCACAACGG 59.664 47.619 0.00 0.0 0.00 4.44 R
3257 3878 2.772568 TGGTTTCTTCATGCACAACG 57.227 45.000 0.00 0.0 0.00 4.10 R
4012 4736 0.168788 CATCAAATTGTGCCTCGCGT 59.831 50.000 5.77 0.0 0.00 6.01 R
5265 11467 0.034089 CCGGGCCAAGGAAGATTTCT 60.034 55.000 10.74 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 2.284112 CCAATGCTGGCCCTTGGT 60.284 61.111 0.00 0.00 35.39 3.67
98 100 2.361610 AATGCTGGCCCTTGGTCG 60.362 61.111 0.00 0.00 0.00 4.79
120 122 1.836383 CCCATGCGTCTACTTACGTC 58.164 55.000 0.00 0.00 44.64 4.34
128 130 2.919859 CGTCTACTTACGTCGAGTGAGA 59.080 50.000 13.14 9.51 38.60 3.27
146 148 1.074405 AGAAACCTGCTGCCAGATGAA 59.926 47.619 0.00 0.00 41.77 2.57
147 149 2.097825 GAAACCTGCTGCCAGATGAAT 58.902 47.619 0.00 0.00 41.77 2.57
148 150 2.226962 AACCTGCTGCCAGATGAATT 57.773 45.000 0.00 0.00 41.77 2.17
149 151 1.471119 ACCTGCTGCCAGATGAATTG 58.529 50.000 0.00 0.00 41.77 2.32
150 152 1.272313 ACCTGCTGCCAGATGAATTGT 60.272 47.619 0.00 0.00 41.77 2.71
151 153 1.822990 CCTGCTGCCAGATGAATTGTT 59.177 47.619 0.00 0.00 41.77 2.83
152 154 2.416836 CCTGCTGCCAGATGAATTGTTG 60.417 50.000 0.00 0.00 41.77 3.33
153 155 2.230508 CTGCTGCCAGATGAATTGTTGT 59.769 45.455 0.00 0.00 41.77 3.32
154 156 2.629137 TGCTGCCAGATGAATTGTTGTT 59.371 40.909 0.00 0.00 0.00 2.83
155 157 2.991190 GCTGCCAGATGAATTGTTGTTG 59.009 45.455 0.00 0.00 0.00 3.33
156 158 3.553508 GCTGCCAGATGAATTGTTGTTGT 60.554 43.478 0.00 0.00 0.00 3.32
157 159 4.232221 CTGCCAGATGAATTGTTGTTGTC 58.768 43.478 0.00 0.00 0.00 3.18
158 160 3.236816 GCCAGATGAATTGTTGTTGTCG 58.763 45.455 0.00 0.00 0.00 4.35
159 161 3.304659 GCCAGATGAATTGTTGTTGTCGT 60.305 43.478 0.00 0.00 0.00 4.34
160 162 4.792704 GCCAGATGAATTGTTGTTGTCGTT 60.793 41.667 0.00 0.00 0.00 3.85
161 163 5.561919 GCCAGATGAATTGTTGTTGTCGTTA 60.562 40.000 0.00 0.00 0.00 3.18
162 164 6.434596 CCAGATGAATTGTTGTTGTCGTTAA 58.565 36.000 0.00 0.00 0.00 2.01
163 165 6.578545 CCAGATGAATTGTTGTTGTCGTTAAG 59.421 38.462 0.00 0.00 0.00 1.85
164 166 7.351981 CAGATGAATTGTTGTTGTCGTTAAGA 58.648 34.615 0.00 0.00 0.00 2.10
165 167 8.017373 CAGATGAATTGTTGTTGTCGTTAAGAT 58.983 33.333 0.00 0.00 0.00 2.40
166 168 8.017373 AGATGAATTGTTGTTGTCGTTAAGATG 58.983 33.333 0.00 0.00 0.00 2.90
167 169 7.022055 TGAATTGTTGTTGTCGTTAAGATGT 57.978 32.000 0.00 0.00 0.00 3.06
176 178 2.063266 TCGTTAAGATGTTGCCGACAC 58.937 47.619 0.00 0.00 42.04 3.67
186 188 2.486203 TGTTGCCGACACATAATTGGTC 59.514 45.455 0.00 0.00 32.00 4.02
197 199 2.303163 TAATTGGTCGACGATGGTGG 57.697 50.000 9.92 0.00 0.00 4.61
198 200 0.611200 AATTGGTCGACGATGGTGGA 59.389 50.000 9.92 0.00 0.00 4.02
206 208 1.376609 GACGATGGTGGATGGTTGCC 61.377 60.000 0.00 0.00 0.00 4.52
207 209 2.472059 CGATGGTGGATGGTTGCCG 61.472 63.158 0.00 0.00 0.00 5.69
208 210 1.077787 GATGGTGGATGGTTGCCGA 60.078 57.895 0.00 0.00 0.00 5.54
209 211 0.466189 GATGGTGGATGGTTGCCGAT 60.466 55.000 0.00 0.00 0.00 4.18
224 226 0.040067 CCGATCGACAGATGATGCGA 60.040 55.000 18.66 0.00 40.16 5.10
246 353 6.584954 CGACAACAAAGCTACATATCTATGC 58.415 40.000 0.00 0.00 37.19 3.14
252 359 2.567169 AGCTACATATCTATGCCGGCAA 59.433 45.455 36.33 19.01 37.19 4.52
253 360 3.007940 AGCTACATATCTATGCCGGCAAA 59.992 43.478 36.33 22.39 37.19 3.68
267 374 0.242017 GGCAAATGCTGTGTGGAGAC 59.758 55.000 5.25 0.00 41.70 3.36
287 394 1.611673 CCAGTGGACCTTTGCCTACAG 60.612 57.143 1.68 0.00 0.00 2.74
297 404 0.317160 TTGCCTACAGAGGTGTGTCG 59.683 55.000 0.00 0.00 45.78 4.35
321 428 2.666190 CTCCACCGTGGTGCAGTG 60.666 66.667 17.32 0.22 44.16 3.66
322 429 3.157949 TCCACCGTGGTGCAGTGA 61.158 61.111 17.32 2.73 44.16 3.41
323 430 2.972505 CCACCGTGGTGCAGTGAC 60.973 66.667 13.65 0.00 44.16 3.67
324 431 2.203001 CACCGTGGTGCAGTGACA 60.203 61.111 6.03 0.00 39.39 3.58
325 432 2.108976 ACCGTGGTGCAGTGACAG 59.891 61.111 0.00 0.00 0.00 3.51
327 434 1.523711 CCGTGGTGCAGTGACAGTT 60.524 57.895 0.00 0.00 0.00 3.16
328 435 1.643292 CGTGGTGCAGTGACAGTTG 59.357 57.895 0.00 0.00 0.00 3.16
329 436 1.356624 GTGGTGCAGTGACAGTTGC 59.643 57.895 0.00 5.18 40.67 4.17
330 437 1.823470 TGGTGCAGTGACAGTTGCC 60.823 57.895 8.86 0.00 39.54 4.52
331 438 2.633657 GTGCAGTGACAGTTGCCG 59.366 61.111 8.86 0.00 39.54 5.69
332 439 3.279116 TGCAGTGACAGTTGCCGC 61.279 61.111 8.86 0.00 39.54 6.53
333 440 4.374702 GCAGTGACAGTTGCCGCG 62.375 66.667 0.00 0.00 34.28 6.46
334 441 4.374702 CAGTGACAGTTGCCGCGC 62.375 66.667 0.00 0.00 0.00 6.86
335 442 4.908687 AGTGACAGTTGCCGCGCA 62.909 61.111 8.75 0.00 36.47 6.09
336 443 4.374702 GTGACAGTTGCCGCGCAG 62.375 66.667 8.75 0.00 40.61 5.18
384 491 6.638468 GCTCTTGTAAGAAAACCAGATTGTTG 59.362 38.462 0.00 0.00 34.03 3.33
385 492 7.639113 TCTTGTAAGAAAACCAGATTGTTGT 57.361 32.000 0.00 0.00 30.73 3.32
386 493 8.740123 TCTTGTAAGAAAACCAGATTGTTGTA 57.260 30.769 0.00 0.00 30.73 2.41
406 513 6.249911 TGTAGTAGTAGTAGAGATGTGGCT 57.750 41.667 0.00 0.00 0.00 4.75
407 514 6.056236 TGTAGTAGTAGTAGAGATGTGGCTG 58.944 44.000 0.00 0.00 0.00 4.85
408 515 5.375283 AGTAGTAGTAGAGATGTGGCTGA 57.625 43.478 0.00 0.00 0.00 4.26
409 516 5.373222 AGTAGTAGTAGAGATGTGGCTGAG 58.627 45.833 0.00 0.00 0.00 3.35
410 517 2.955660 AGTAGTAGAGATGTGGCTGAGC 59.044 50.000 0.00 0.00 0.00 4.26
411 518 2.157640 AGTAGAGATGTGGCTGAGCT 57.842 50.000 3.72 0.00 0.00 4.09
413 520 3.636679 AGTAGAGATGTGGCTGAGCTTA 58.363 45.455 3.72 0.00 0.00 3.09
414 521 4.222336 AGTAGAGATGTGGCTGAGCTTAT 58.778 43.478 3.72 0.00 0.00 1.73
415 522 5.389520 AGTAGAGATGTGGCTGAGCTTATA 58.610 41.667 3.72 0.00 0.00 0.98
416 523 6.015918 AGTAGAGATGTGGCTGAGCTTATAT 58.984 40.000 3.72 0.00 0.00 0.86
417 524 5.404466 AGAGATGTGGCTGAGCTTATATC 57.596 43.478 3.72 7.54 0.00 1.63
418 525 4.837298 AGAGATGTGGCTGAGCTTATATCA 59.163 41.667 3.72 0.00 0.00 2.15
419 526 5.306419 AGAGATGTGGCTGAGCTTATATCAA 59.694 40.000 3.72 0.00 0.00 2.57
424 531 5.065914 GTGGCTGAGCTTATATCAATGGAA 58.934 41.667 3.72 0.00 0.00 3.53
427 534 5.312079 GCTGAGCTTATATCAATGGAACCT 58.688 41.667 0.00 0.00 0.00 3.50
447 554 5.113502 CCTCAAGGTGATTCAAACAAGAC 57.886 43.478 0.00 0.00 0.00 3.01
448 555 4.580167 CCTCAAGGTGATTCAAACAAGACA 59.420 41.667 0.00 0.00 0.00 3.41
449 556 5.242393 CCTCAAGGTGATTCAAACAAGACAT 59.758 40.000 0.00 0.00 0.00 3.06
450 557 6.239120 CCTCAAGGTGATTCAAACAAGACATT 60.239 38.462 0.00 0.00 0.00 2.71
451 558 6.738114 TCAAGGTGATTCAAACAAGACATTC 58.262 36.000 0.00 0.00 0.00 2.67
452 559 6.320926 TCAAGGTGATTCAAACAAGACATTCA 59.679 34.615 0.00 0.00 0.00 2.57
453 560 6.713762 AGGTGATTCAAACAAGACATTCAA 57.286 33.333 0.00 0.00 0.00 2.69
454 561 7.111247 AGGTGATTCAAACAAGACATTCAAA 57.889 32.000 0.00 0.00 0.00 2.69
455 562 6.980397 AGGTGATTCAAACAAGACATTCAAAC 59.020 34.615 0.00 0.00 0.00 2.93
456 563 6.756074 GGTGATTCAAACAAGACATTCAAACA 59.244 34.615 0.00 0.00 0.00 2.83
471 578 6.200665 ACATTCAAACAACACCAAATGATTCG 59.799 34.615 0.00 0.00 0.00 3.34
480 587 4.706476 ACACCAAATGATTCGTGGATTCAT 59.294 37.500 3.04 0.00 35.17 2.57
491 598 4.578871 TCGTGGATTCATTGTGAGAACAT 58.421 39.130 0.00 0.00 0.00 2.71
624 778 3.883489 TCACATACGGATGTAGAGACCTG 59.117 47.826 14.23 0.00 44.82 4.00
632 786 1.303799 TGTAGAGACCTGACGCGGAC 61.304 60.000 12.47 4.63 0.00 4.79
637 791 4.129737 ACCTGACGCGGACGGATG 62.130 66.667 12.47 0.30 46.04 3.51
686 876 4.081030 GCCGACGACGACGACAGA 62.081 66.667 20.63 0.00 42.66 3.41
687 877 2.096030 CCGACGACGACGACAGAG 59.904 66.667 20.63 0.07 42.66 3.35
688 878 2.571096 CGACGACGACGACAGAGC 60.571 66.667 15.32 0.00 42.66 4.09
689 879 2.202324 GACGACGACGACAGAGCC 60.202 66.667 15.32 0.00 42.66 4.70
690 880 3.664223 GACGACGACGACAGAGCCC 62.664 68.421 15.32 0.00 42.66 5.19
691 881 4.477975 CGACGACGACAGAGCCCC 62.478 72.222 0.00 0.00 42.66 5.80
692 882 3.063084 GACGACGACAGAGCCCCT 61.063 66.667 0.00 0.00 0.00 4.79
694 884 3.062466 CGACGACAGAGCCCCTGA 61.062 66.667 10.30 0.00 45.78 3.86
695 885 2.636412 CGACGACAGAGCCCCTGAA 61.636 63.158 10.30 0.00 45.78 3.02
705 895 1.973812 GCCCCTGAACAAGCTGGAC 60.974 63.158 0.00 0.00 0.00 4.02
718 908 3.407967 TGGACGGCCCAGATTCCC 61.408 66.667 3.83 0.00 40.82 3.97
720 910 2.190578 GACGGCCCAGATTCCCAG 59.809 66.667 0.00 0.00 0.00 4.45
725 915 1.755783 GCCCAGATTCCCAGCAAGG 60.756 63.158 0.00 0.00 37.03 3.61
742 932 1.053264 AGGAGCATCTACAGGCCCAG 61.053 60.000 0.00 0.00 33.73 4.45
750 940 2.413437 CTACAGGCCCAGCGAGATCG 62.413 65.000 0.00 0.00 43.27 3.69
751 941 2.904178 TACAGGCCCAGCGAGATCGA 62.904 60.000 6.39 0.00 43.02 3.59
752 942 2.522923 AGGCCCAGCGAGATCGAT 60.523 61.111 6.39 0.00 43.02 3.59
753 943 2.136878 AGGCCCAGCGAGATCGATT 61.137 57.895 6.39 0.00 43.02 3.34
754 944 1.666234 GGCCCAGCGAGATCGATTC 60.666 63.158 6.39 0.00 43.02 2.52
755 945 1.666234 GCCCAGCGAGATCGATTCC 60.666 63.158 6.39 0.00 43.02 3.01
756 946 1.742146 CCCAGCGAGATCGATTCCA 59.258 57.895 6.39 0.00 43.02 3.53
757 947 0.319728 CCCAGCGAGATCGATTCCAT 59.680 55.000 6.39 0.00 43.02 3.41
759 949 1.671261 CCAGCGAGATCGATTCCATCC 60.671 57.143 6.39 0.00 43.02 3.51
760 950 1.000171 CAGCGAGATCGATTCCATCCA 60.000 52.381 6.39 0.00 43.02 3.41
761 951 1.898472 AGCGAGATCGATTCCATCCAT 59.102 47.619 6.39 0.00 43.02 3.41
764 954 2.733542 CGAGATCGATTCCATCCATCCG 60.734 54.545 0.00 0.00 43.02 4.18
766 956 0.979665 ATCGATTCCATCCATCCGCT 59.020 50.000 0.00 0.00 0.00 5.52
768 958 1.967779 TCGATTCCATCCATCCGCTAA 59.032 47.619 0.00 0.00 0.00 3.09
769 959 2.367241 TCGATTCCATCCATCCGCTAAA 59.633 45.455 0.00 0.00 0.00 1.85
770 960 2.738846 CGATTCCATCCATCCGCTAAAG 59.261 50.000 0.00 0.00 0.00 1.85
771 961 2.638480 TTCCATCCATCCGCTAAAGG 57.362 50.000 0.00 0.00 0.00 3.11
772 962 0.108585 TCCATCCATCCGCTAAAGGC 59.891 55.000 0.00 0.00 37.64 4.35
773 963 0.890996 CCATCCATCCGCTAAAGGCC 60.891 60.000 0.00 0.00 37.74 5.19
774 964 0.890996 CATCCATCCGCTAAAGGCCC 60.891 60.000 0.00 0.00 37.74 5.80
775 965 1.352622 ATCCATCCGCTAAAGGCCCA 61.353 55.000 0.00 0.00 37.74 5.36
776 966 1.077068 CCATCCGCTAAAGGCCCAA 60.077 57.895 0.00 0.00 37.74 4.12
777 967 0.682855 CCATCCGCTAAAGGCCCAAA 60.683 55.000 0.00 0.00 37.74 3.28
778 968 0.740737 CATCCGCTAAAGGCCCAAAG 59.259 55.000 0.00 0.00 37.74 2.77
779 969 0.623723 ATCCGCTAAAGGCCCAAAGA 59.376 50.000 0.00 0.00 37.74 2.52
780 970 0.035439 TCCGCTAAAGGCCCAAAGAG 60.035 55.000 0.00 0.00 37.74 2.85
781 971 1.657751 CCGCTAAAGGCCCAAAGAGC 61.658 60.000 0.00 0.27 37.74 4.09
782 972 1.803289 GCTAAAGGCCCAAAGAGCG 59.197 57.895 0.00 0.00 34.27 5.03
783 973 0.676782 GCTAAAGGCCCAAAGAGCGA 60.677 55.000 0.00 0.00 34.27 4.93
784 974 1.373570 CTAAAGGCCCAAAGAGCGAG 58.626 55.000 0.00 0.00 0.00 5.03
785 975 0.676782 TAAAGGCCCAAAGAGCGAGC 60.677 55.000 0.00 0.00 0.00 5.03
786 976 4.767255 AGGCCCAAAGAGCGAGCG 62.767 66.667 0.00 0.00 0.00 5.03
787 977 4.760047 GGCCCAAAGAGCGAGCGA 62.760 66.667 0.00 0.00 0.00 4.93
788 978 2.742372 GCCCAAAGAGCGAGCGAA 60.742 61.111 0.00 0.00 0.00 4.70
789 979 2.744768 GCCCAAAGAGCGAGCGAAG 61.745 63.158 0.00 0.00 0.00 3.79
790 980 2.103042 CCCAAAGAGCGAGCGAAGG 61.103 63.158 0.00 0.00 0.00 3.46
791 981 2.103042 CCAAAGAGCGAGCGAAGGG 61.103 63.158 0.00 0.00 0.00 3.95
792 982 2.103042 CAAAGAGCGAGCGAAGGGG 61.103 63.158 0.00 0.00 0.00 4.79
793 983 2.283529 AAAGAGCGAGCGAAGGGGA 61.284 57.895 0.00 0.00 0.00 4.81
794 984 1.827399 AAAGAGCGAGCGAAGGGGAA 61.827 55.000 0.00 0.00 0.00 3.97
795 985 1.827399 AAGAGCGAGCGAAGGGGAAA 61.827 55.000 0.00 0.00 0.00 3.13
796 986 1.811679 GAGCGAGCGAAGGGGAAAG 60.812 63.158 0.00 0.00 0.00 2.62
797 987 2.227089 GAGCGAGCGAAGGGGAAAGA 62.227 60.000 0.00 0.00 0.00 2.52
798 988 1.375523 GCGAGCGAAGGGGAAAGAA 60.376 57.895 0.00 0.00 0.00 2.52
799 989 0.953960 GCGAGCGAAGGGGAAAGAAA 60.954 55.000 0.00 0.00 0.00 2.52
800 990 1.079503 CGAGCGAAGGGGAAAGAAAG 58.920 55.000 0.00 0.00 0.00 2.62
801 991 1.337823 CGAGCGAAGGGGAAAGAAAGA 60.338 52.381 0.00 0.00 0.00 2.52
802 992 2.779506 GAGCGAAGGGGAAAGAAAGAA 58.220 47.619 0.00 0.00 0.00 2.52
803 993 2.744741 GAGCGAAGGGGAAAGAAAGAAG 59.255 50.000 0.00 0.00 0.00 2.85
804 994 2.372172 AGCGAAGGGGAAAGAAAGAAGA 59.628 45.455 0.00 0.00 0.00 2.87
805 995 2.744741 GCGAAGGGGAAAGAAAGAAGAG 59.255 50.000 0.00 0.00 0.00 2.85
806 996 3.557264 GCGAAGGGGAAAGAAAGAAGAGA 60.557 47.826 0.00 0.00 0.00 3.10
807 997 4.642429 CGAAGGGGAAAGAAAGAAGAGAA 58.358 43.478 0.00 0.00 0.00 2.87
808 998 5.063880 CGAAGGGGAAAGAAAGAAGAGAAA 58.936 41.667 0.00 0.00 0.00 2.52
809 999 5.180304 CGAAGGGGAAAGAAAGAAGAGAAAG 59.820 44.000 0.00 0.00 0.00 2.62
810 1000 4.402829 AGGGGAAAGAAAGAAGAGAAAGC 58.597 43.478 0.00 0.00 0.00 3.51
811 1001 3.508012 GGGGAAAGAAAGAAGAGAAAGCC 59.492 47.826 0.00 0.00 0.00 4.35
812 1002 3.189495 GGGAAAGAAAGAAGAGAAAGCCG 59.811 47.826 0.00 0.00 0.00 5.52
813 1003 3.815962 GGAAAGAAAGAAGAGAAAGCCGT 59.184 43.478 0.00 0.00 0.00 5.68
814 1004 4.276183 GGAAAGAAAGAAGAGAAAGCCGTT 59.724 41.667 0.00 0.00 0.00 4.44
815 1005 5.425577 AAAGAAAGAAGAGAAAGCCGTTC 57.574 39.130 0.00 0.00 36.38 3.95
816 1006 3.403968 AGAAAGAAGAGAAAGCCGTTCC 58.596 45.455 0.00 0.00 36.86 3.62
817 1007 2.186532 AAGAAGAGAAAGCCGTTCCC 57.813 50.000 0.00 0.00 36.86 3.97
818 1008 1.353091 AGAAGAGAAAGCCGTTCCCT 58.647 50.000 0.00 0.00 36.86 4.20
819 1009 1.276705 AGAAGAGAAAGCCGTTCCCTC 59.723 52.381 0.00 0.00 36.86 4.30
820 1010 1.002087 GAAGAGAAAGCCGTTCCCTCA 59.998 52.381 0.00 0.00 36.86 3.86
821 1011 1.056660 AGAGAAAGCCGTTCCCTCAA 58.943 50.000 0.00 0.00 36.86 3.02
822 1012 1.420138 AGAGAAAGCCGTTCCCTCAAA 59.580 47.619 0.00 0.00 36.86 2.69
823 1013 2.158667 AGAGAAAGCCGTTCCCTCAAAA 60.159 45.455 0.00 0.00 36.86 2.44
824 1014 2.621526 GAGAAAGCCGTTCCCTCAAAAA 59.378 45.455 0.00 0.00 36.86 1.94
856 1046 3.906014 AAAGAAAGAAGAGAAAGCCGC 57.094 42.857 0.00 0.00 0.00 6.53
857 1047 1.433534 AGAAAGAAGAGAAAGCCGCG 58.566 50.000 0.00 0.00 0.00 6.46
858 1048 1.149148 GAAAGAAGAGAAAGCCGCGT 58.851 50.000 4.92 0.00 0.00 6.01
859 1049 1.127029 GAAAGAAGAGAAAGCCGCGTC 59.873 52.381 4.92 0.00 0.00 5.19
860 1050 1.009389 AAGAAGAGAAAGCCGCGTCG 61.009 55.000 4.92 0.00 0.00 5.12
861 1051 1.443872 GAAGAGAAAGCCGCGTCGA 60.444 57.895 4.92 0.00 0.00 4.20
862 1052 1.406970 GAAGAGAAAGCCGCGTCGAG 61.407 60.000 4.92 0.00 0.00 4.04
863 1053 2.126424 GAGAAAGCCGCGTCGAGT 60.126 61.111 4.92 0.00 0.00 4.18
864 1054 2.126424 AGAAAGCCGCGTCGAGTC 60.126 61.111 4.92 0.00 0.00 3.36
865 1055 3.533691 GAAAGCCGCGTCGAGTCG 61.534 66.667 6.09 6.09 0.00 4.18
893 1083 3.245315 CGGTCGCGTCATCGAACC 61.245 66.667 5.77 2.98 42.75 3.62
894 1084 3.245315 GGTCGCGTCATCGAACCG 61.245 66.667 5.77 0.00 40.07 4.44
895 1085 2.202388 GTCGCGTCATCGAACCGA 60.202 61.111 5.77 0.00 40.43 4.69
903 1097 2.618053 GTCATCGAACCGACCAAATCT 58.382 47.619 0.00 0.00 39.18 2.40
971 1171 0.600255 CAAGTCTCCAAAGTCGCCGT 60.600 55.000 0.00 0.00 0.00 5.68
1189 1421 1.150567 GCGCTTCATCGTGAGCATCT 61.151 55.000 0.00 0.00 34.92 2.90
1191 1423 1.216122 GCTTCATCGTGAGCATCTCC 58.784 55.000 0.00 0.00 34.92 3.71
1193 1425 0.465705 TTCATCGTGAGCATCTCCCC 59.534 55.000 0.00 0.00 34.92 4.81
1194 1426 1.070445 CATCGTGAGCATCTCCCCC 59.930 63.158 0.00 0.00 34.92 5.40
1195 1427 1.074926 ATCGTGAGCATCTCCCCCT 60.075 57.895 0.00 0.00 34.92 4.79
1196 1428 0.188587 ATCGTGAGCATCTCCCCCTA 59.811 55.000 0.00 0.00 34.92 3.53
1197 1429 0.188587 TCGTGAGCATCTCCCCCTAT 59.811 55.000 0.00 0.00 34.92 2.57
1198 1430 0.605589 CGTGAGCATCTCCCCCTATC 59.394 60.000 0.00 0.00 34.92 2.08
1199 1431 1.825242 CGTGAGCATCTCCCCCTATCT 60.825 57.143 0.00 0.00 34.92 1.98
1200 1432 1.899142 GTGAGCATCTCCCCCTATCTC 59.101 57.143 0.00 0.00 34.92 2.75
1201 1433 1.203237 TGAGCATCTCCCCCTATCTCC 60.203 57.143 0.00 0.00 34.92 3.71
1202 1434 0.118144 AGCATCTCCCCCTATCTCCC 59.882 60.000 0.00 0.00 0.00 4.30
1203 1435 0.912006 GCATCTCCCCCTATCTCCCC 60.912 65.000 0.00 0.00 0.00 4.81
1204 1436 0.796255 CATCTCCCCCTATCTCCCCT 59.204 60.000 0.00 0.00 0.00 4.79
1299 1551 2.526120 GCTTGCTGGATCGCGGTAC 61.526 63.158 6.13 0.00 0.00 3.34
1344 1596 2.103042 CGCCTGCTCACTAGTTGGC 61.103 63.158 9.22 9.22 38.78 4.52
1369 1621 2.355837 TGTTCGTGCTGCTCGTCC 60.356 61.111 21.39 14.10 0.00 4.79
1375 1627 1.005630 GTGCTGCTCGTCCTTGACT 60.006 57.895 0.00 0.00 0.00 3.41
1376 1628 0.243907 GTGCTGCTCGTCCTTGACTA 59.756 55.000 0.00 0.00 0.00 2.59
1387 1639 3.522553 GTCCTTGACTATTTCAGACCGG 58.477 50.000 0.00 0.00 34.94 5.28
1388 1640 2.500098 TCCTTGACTATTTCAGACCGGG 59.500 50.000 6.32 0.00 34.94 5.73
1391 1643 3.095912 TGACTATTTCAGACCGGGAGA 57.904 47.619 6.32 0.00 0.00 3.71
1444 1712 4.832266 AGCTGAGATTAGTACAGATGGAGG 59.168 45.833 0.00 0.00 34.07 4.30
1470 1738 1.461559 AGCTCCTTTTGCTGCATCTC 58.538 50.000 1.84 0.00 39.56 2.75
1480 1748 0.672889 GCTGCATCTCGAGATCCAGA 59.327 55.000 38.69 17.71 41.68 3.86
1502 1770 1.336240 GCTCGCTTTGGTGCTGAATTT 60.336 47.619 0.00 0.00 0.00 1.82
1508 1776 3.740832 GCTTTGGTGCTGAATTTTGGTAC 59.259 43.478 0.00 0.00 0.00 3.34
1586 2026 2.691011 AGGCGTTGCTTGTTTTAGGAAA 59.309 40.909 0.00 0.00 0.00 3.13
1660 2135 5.086104 TGTTGCTACAATAGAACCCTCTC 57.914 43.478 0.00 0.00 32.70 3.20
1661 2136 4.777896 TGTTGCTACAATAGAACCCTCTCT 59.222 41.667 0.00 0.00 32.70 3.10
1662 2137 5.105310 TGTTGCTACAATAGAACCCTCTCTC 60.105 44.000 0.00 0.00 32.70 3.20
1663 2138 4.873010 TGCTACAATAGAACCCTCTCTCT 58.127 43.478 0.00 0.00 32.70 3.10
1664 2139 4.646945 TGCTACAATAGAACCCTCTCTCTG 59.353 45.833 0.00 0.00 32.70 3.35
1665 2140 4.038642 GCTACAATAGAACCCTCTCTCTGG 59.961 50.000 0.00 0.00 32.70 3.86
1674 2149 1.551099 CCCTCTCTCTGGTGTTCTCCA 60.551 57.143 0.00 0.00 36.00 3.86
1692 2167 1.605738 AGGTCGACCGGTTACTGCT 60.606 57.895 28.26 5.08 42.08 4.24
1707 2182 2.575993 GCTTCTCGAGCCTCAGCA 59.424 61.111 7.81 0.00 46.01 4.41
1708 2183 1.519013 GCTTCTCGAGCCTCAGCAG 60.519 63.158 7.81 0.00 46.01 4.24
1709 2184 1.141449 CTTCTCGAGCCTCAGCAGG 59.859 63.158 7.81 0.00 43.56 4.85
1818 2348 2.357327 TTTACTCCATGTCGGACGTG 57.643 50.000 20.83 20.83 39.64 4.49
1832 2362 1.133407 GGACGTGGCAGAGTCTAGAAG 59.867 57.143 18.56 0.00 37.52 2.85
1851 2381 5.564550 AGAAGATGGCAAACACAGTTATCT 58.435 37.500 0.00 0.00 0.00 1.98
1860 2390 7.880713 TGGCAAACACAGTTATCTACTTGAATA 59.119 33.333 0.00 0.00 33.85 1.75
1876 2406 9.288576 CTACTTGAATATGGCCATTTCTGAATA 57.711 33.333 26.37 15.01 0.00 1.75
1877 2407 7.945134 ACTTGAATATGGCCATTTCTGAATAC 58.055 34.615 26.37 6.27 0.00 1.89
1918 2448 0.331278 TATCCTGCAAAGGGTGGTGG 59.669 55.000 0.00 0.00 0.00 4.61
1936 2466 0.391263 GGTGTCTAAAGCTGGTCGGG 60.391 60.000 0.00 0.00 0.00 5.14
1949 2479 1.202879 TGGTCGGGTTGCTTTCTTGAT 60.203 47.619 0.00 0.00 0.00 2.57
1970 2502 9.778993 CTTGATTTGATAAGATCGTGATTTGTT 57.221 29.630 0.00 0.00 0.00 2.83
1973 2505 5.484173 TGATAAGATCGTGATTTGTTGGC 57.516 39.130 0.00 0.00 0.00 4.52
1976 2547 0.523335 GATCGTGATTTGTTGGCCGC 60.523 55.000 0.00 0.00 0.00 6.53
2014 2586 6.072112 TCCTTGTCATAAGTTTGAAAGTGC 57.928 37.500 0.00 0.00 0.00 4.40
2140 2714 6.653320 AGCTCGTTCAAACCTGTATTATTTCA 59.347 34.615 0.00 0.00 0.00 2.69
2202 2779 5.268118 TCTGCTAAGTAGATGGACATGTG 57.732 43.478 1.15 0.00 0.00 3.21
2233 2810 2.167900 GTGCGGGGAGAGTTAGTGTTAT 59.832 50.000 0.00 0.00 0.00 1.89
2234 2811 2.835764 TGCGGGGAGAGTTAGTGTTATT 59.164 45.455 0.00 0.00 0.00 1.40
2235 2812 4.025360 TGCGGGGAGAGTTAGTGTTATTA 58.975 43.478 0.00 0.00 0.00 0.98
2239 2816 5.359009 CGGGGAGAGTTAGTGTTATTACTCA 59.641 44.000 0.00 0.00 39.51 3.41
2266 2846 9.010366 GTGTCAAAAAGTTTAGATGAAGAACAC 57.990 33.333 0.00 0.00 0.00 3.32
2274 2854 8.506168 AGTTTAGATGAAGAACACAAGTTTGA 57.494 30.769 0.00 0.00 38.30 2.69
2294 2874 6.959671 TTGACACTTGAATTTGGTTGTTTC 57.040 33.333 0.00 0.00 0.00 2.78
2298 2878 7.330700 TGACACTTGAATTTGGTTGTTTCTTTC 59.669 33.333 0.00 0.00 0.00 2.62
2309 2889 7.136289 TGGTTGTTTCTTTCATTACCGATAC 57.864 36.000 0.00 0.00 0.00 2.24
2327 2907 5.629849 CCGATACGAGTCATATCCTTCAAAC 59.370 44.000 0.80 0.00 0.00 2.93
2336 2916 8.915057 AGTCATATCCTTCAAACCATGATAAG 57.085 34.615 0.00 0.00 38.03 1.73
2348 2933 7.283127 TCAAACCATGATAAGGTCTAAATCTGC 59.717 37.037 0.00 0.00 38.76 4.26
2370 2955 4.747810 CTTGGTTTGCTTTCTTGACTTGT 58.252 39.130 0.00 0.00 0.00 3.16
2491 3076 1.078143 AGGGCTCGCAATTCAGGTC 60.078 57.895 0.00 0.00 0.00 3.85
2547 3133 3.120199 CCAACGATTTCATGGACTGTGTC 60.120 47.826 0.00 0.00 36.27 3.67
2724 3318 6.652481 CACCTTTCTCTTCACAGTATGAATGT 59.348 38.462 0.00 0.00 46.37 2.71
2781 3375 0.690762 TGGTTCTGGTTGCTCCTACC 59.309 55.000 0.00 0.00 37.07 3.18
2911 3505 5.579511 CCTTCATTCTGCATTGGAAAATCAC 59.420 40.000 0.00 0.00 0.00 3.06
2921 3521 7.944061 TGCATTGGAAAATCACCTCTTATATG 58.056 34.615 0.00 0.00 0.00 1.78
2955 3569 3.640967 ACAATGGTTTGTGCATGTTACCT 59.359 39.130 10.35 0.00 44.36 3.08
2987 3601 4.762251 ACCTTTATCTCTTGCTTGTTGGTC 59.238 41.667 0.00 0.00 0.00 4.02
3140 3758 3.505680 CAGTCCTCTCCTCAGGATATTCG 59.494 52.174 0.00 0.00 44.75 3.34
3217 3838 7.925483 TCCATCCTATTTTTGTTGTGTTTCTTG 59.075 33.333 0.00 0.00 0.00 3.02
3403 4026 8.478877 AGCTGCACTTAAAGAGTAATATACAGT 58.521 33.333 1.02 0.00 36.65 3.55
3512 4136 1.374758 AGTTGCTGCGCTACCTGTC 60.375 57.895 9.73 0.00 35.09 3.51
3593 4217 9.256228 TCATCTTTCTACAGGTAGTTATCTGTT 57.744 33.333 10.11 0.00 44.85 3.16
3630 4254 2.954989 TCCATTTGTGTAGTTTGCTGCA 59.045 40.909 0.00 0.00 34.98 4.41
3820 4458 3.997021 CGTATGTTGCTCTGACTTTCCTT 59.003 43.478 0.00 0.00 0.00 3.36
3830 4468 5.494724 CTCTGACTTTCCTTGGAATCATGA 58.505 41.667 0.00 0.00 0.00 3.07
4009 4733 6.569127 TTCACTACATAGCTGGGGAATAAA 57.431 37.500 0.00 0.00 0.00 1.40
4010 4734 6.763715 TCACTACATAGCTGGGGAATAAAT 57.236 37.500 0.00 0.00 0.00 1.40
4011 4735 7.865530 TCACTACATAGCTGGGGAATAAATA 57.134 36.000 0.00 0.00 0.00 1.40
4012 4736 8.270137 TCACTACATAGCTGGGGAATAAATAA 57.730 34.615 0.00 0.00 0.00 1.40
4015 4739 4.760204 ACATAGCTGGGGAATAAATAACGC 59.240 41.667 0.00 0.00 0.00 4.84
4115 4839 1.741770 CGGCGCTTCCTTTAGCAGT 60.742 57.895 7.64 0.00 41.28 4.40
4189 4919 1.066908 CGTTTTTCCTGGCTTGCTTGA 59.933 47.619 0.00 0.00 0.00 3.02
4305 5040 1.063006 GTACATCGACCGCTACGCA 59.937 57.895 0.00 0.00 0.00 5.24
4418 5155 3.813724 GCGGAGAGGGGAAAAACATATAC 59.186 47.826 0.00 0.00 0.00 1.47
4419 5156 4.444449 GCGGAGAGGGGAAAAACATATACT 60.444 45.833 0.00 0.00 0.00 2.12
4420 5157 5.221581 GCGGAGAGGGGAAAAACATATACTA 60.222 44.000 0.00 0.00 0.00 1.82
4421 5158 6.520231 GCGGAGAGGGGAAAAACATATACTAT 60.520 42.308 0.00 0.00 0.00 2.12
4453 5199 4.749099 ACTACTAGTAACTAGCATCGACCG 59.251 45.833 3.76 0.00 37.57 4.79
4475 5221 5.424757 CGTCCCTGGTGATTTCAAACTATA 58.575 41.667 0.00 0.00 0.00 1.31
4483 5233 5.490213 GTGATTTCAAACTATAACGCTCGG 58.510 41.667 0.00 0.00 0.00 4.63
4666 5439 1.462283 CTTGAATCACGGTGCTGTCAG 59.538 52.381 2.51 0.00 0.00 3.51
4670 5443 1.471829 ATCACGGTGCTGTCAGACCA 61.472 55.000 16.74 0.42 31.97 4.02
4671 5444 1.004560 CACGGTGCTGTCAGACCAT 60.005 57.895 16.74 4.07 31.97 3.55
4687 5470 3.200825 AGACCATAGTCCCTGATTTGTGG 59.799 47.826 0.00 0.00 44.72 4.17
4701 5484 0.584396 TTGTGGCGAGTACTTTTGCG 59.416 50.000 0.00 0.00 0.00 4.85
4707 6888 3.613737 TGGCGAGTACTTTTGCGTTATAC 59.386 43.478 0.00 0.00 0.00 1.47
4731 6912 5.909477 TGGTTTAGTTCCCTGTATCATACG 58.091 41.667 0.00 0.00 0.00 3.06
4739 6920 5.717078 TCCCTGTATCATACGTGGTTATC 57.283 43.478 0.00 0.00 0.00 1.75
4754 6935 6.103997 CGTGGTTATCTGGTGTAGTTTGTAT 58.896 40.000 0.00 0.00 0.00 2.29
4757 6938 6.013206 TGGTTATCTGGTGTAGTTTGTATGGT 60.013 38.462 0.00 0.00 0.00 3.55
4763 6944 4.282957 TGGTGTAGTTTGTATGGTTCCGTA 59.717 41.667 0.00 0.00 0.00 4.02
4782 6963 5.010719 TCCGTATCATCACTGGTAGAATTCC 59.989 44.000 0.65 0.00 0.00 3.01
4791 6972 3.244911 ACTGGTAGAATTCCCCACTGTTG 60.245 47.826 9.77 4.14 0.00 3.33
4804 6985 2.034939 CCACTGTTGATGCTTGCTTGAA 59.965 45.455 0.00 0.00 0.00 2.69
4805 6986 3.305813 CCACTGTTGATGCTTGCTTGAAT 60.306 43.478 0.00 0.00 0.00 2.57
4806 6987 4.304110 CACTGTTGATGCTTGCTTGAATT 58.696 39.130 0.00 0.00 0.00 2.17
4807 6988 4.384846 CACTGTTGATGCTTGCTTGAATTC 59.615 41.667 0.00 0.00 0.00 2.17
4808 6989 4.280174 ACTGTTGATGCTTGCTTGAATTCT 59.720 37.500 7.05 0.00 0.00 2.40
4810 6991 4.171754 GTTGATGCTTGCTTGAATTCTCC 58.828 43.478 7.05 0.00 0.00 3.71
4811 6992 3.423749 TGATGCTTGCTTGAATTCTCCA 58.576 40.909 7.05 0.00 0.00 3.86
4812 6993 3.192001 TGATGCTTGCTTGAATTCTCCAC 59.808 43.478 7.05 0.00 0.00 4.02
4813 6994 2.867624 TGCTTGCTTGAATTCTCCACT 58.132 42.857 7.05 0.00 0.00 4.00
4814 6995 2.555325 TGCTTGCTTGAATTCTCCACTG 59.445 45.455 7.05 0.00 0.00 3.66
4816 6997 3.365767 GCTTGCTTGAATTCTCCACTGTC 60.366 47.826 7.05 0.00 0.00 3.51
4818 6999 4.090761 TGCTTGAATTCTCCACTGTCTT 57.909 40.909 7.05 0.00 0.00 3.01
4819 7000 3.817084 TGCTTGAATTCTCCACTGTCTTG 59.183 43.478 7.05 0.00 0.00 3.02
4820 7001 3.817647 GCTTGAATTCTCCACTGTCTTGT 59.182 43.478 7.05 0.00 0.00 3.16
4828 7009 2.242113 CACTGTCTTGTGGAGCAGC 58.758 57.895 0.00 0.00 34.73 5.25
4829 7010 1.072159 ACTGTCTTGTGGAGCAGCC 59.928 57.895 0.00 0.00 34.73 4.85
4830 7011 1.071987 CTGTCTTGTGGAGCAGCCA 59.928 57.895 0.00 0.00 46.96 4.75
4873 7132 7.069950 TCCAAACAGATGTAGTATGTGAGCTAT 59.930 37.037 0.00 0.00 31.42 2.97
4886 7162 4.960938 TGTGAGCTATCAAGTTGTCAGTT 58.039 39.130 2.11 0.00 37.14 3.16
4887 7163 4.751600 TGTGAGCTATCAAGTTGTCAGTTG 59.248 41.667 2.11 0.00 37.14 3.16
4888 7164 4.153117 GTGAGCTATCAAGTTGTCAGTTGG 59.847 45.833 2.11 0.00 37.14 3.77
4889 7165 3.679389 AGCTATCAAGTTGTCAGTTGGG 58.321 45.455 2.11 0.00 34.45 4.12
4890 7166 3.327757 AGCTATCAAGTTGTCAGTTGGGA 59.672 43.478 2.11 0.00 34.45 4.37
4891 7167 4.072131 GCTATCAAGTTGTCAGTTGGGAA 58.928 43.478 2.11 0.00 34.45 3.97
4892 7168 4.518970 GCTATCAAGTTGTCAGTTGGGAAA 59.481 41.667 2.11 0.00 34.45 3.13
4893 7169 5.183904 GCTATCAAGTTGTCAGTTGGGAAAT 59.816 40.000 2.11 0.00 34.45 2.17
4894 7170 6.294731 GCTATCAAGTTGTCAGTTGGGAAATT 60.295 38.462 2.11 0.00 34.45 1.82
4895 7171 5.930837 TCAAGTTGTCAGTTGGGAAATTT 57.069 34.783 2.11 0.00 34.45 1.82
4896 7172 7.595819 ATCAAGTTGTCAGTTGGGAAATTTA 57.404 32.000 2.11 0.00 34.45 1.40
4897 7173 7.595819 TCAAGTTGTCAGTTGGGAAATTTAT 57.404 32.000 2.11 0.00 34.45 1.40
4898 7174 8.698973 TCAAGTTGTCAGTTGGGAAATTTATA 57.301 30.769 2.11 0.00 34.45 0.98
4899 7175 9.137459 TCAAGTTGTCAGTTGGGAAATTTATAA 57.863 29.630 2.11 0.00 34.45 0.98
4900 7176 9.757227 CAAGTTGTCAGTTGGGAAATTTATAAA 57.243 29.630 0.00 0.00 30.50 1.40
4928 7204 2.948979 TGGATTCAACGAACAAGCAAGT 59.051 40.909 0.00 0.00 0.00 3.16
4934 7210 3.625313 TCAACGAACAAGCAAGTGATTCA 59.375 39.130 0.00 0.00 0.00 2.57
4938 7214 5.591099 ACGAACAAGCAAGTGATTCATTTT 58.409 33.333 0.00 0.00 0.00 1.82
4958 7234 2.619147 TGTTTCGTTCGAACTCAACCA 58.381 42.857 24.80 13.46 0.00 3.67
4978 7254 3.243636 CCAGCAGCAGAAACACTCAAAAT 60.244 43.478 0.00 0.00 0.00 1.82
4995 7273 4.036852 TCAAAATTCCACACGCATGTACAA 59.963 37.500 0.00 0.00 36.72 2.41
5032 7310 7.562454 TGGAAATCTATCCATCTTTTCTTGCAT 59.438 33.333 0.00 0.00 44.52 3.96
5040 7318 5.126545 TCCATCTTTTCTTGCATCATCCTTG 59.873 40.000 0.00 0.00 0.00 3.61
5054 7332 2.879103 TCCTTGTTCCCATTCCTGTC 57.121 50.000 0.00 0.00 0.00 3.51
5066 7344 4.263068 CCCATTCCTGTCTGAACTAACAGT 60.263 45.833 0.00 0.00 41.04 3.55
5074 7352 6.156748 TGTCTGAACTAACAGTAGCAGAAA 57.843 37.500 11.21 5.93 39.67 2.52
5089 7367 3.394606 AGCAGAAACTCCAGAAAAGGGTA 59.605 43.478 0.00 0.00 0.00 3.69
5099 7377 3.193479 CCAGAAAAGGGTATTCAGTTGCC 59.807 47.826 0.00 0.00 0.00 4.52
5100 7378 3.826157 CAGAAAAGGGTATTCAGTTGCCA 59.174 43.478 0.00 0.00 0.00 4.92
5105 7506 2.042979 AGGGTATTCAGTTGCCAACCAT 59.957 45.455 3.45 0.00 0.00 3.55
5207 11409 2.892425 GGGCGGTGATCAGCTTCG 60.892 66.667 21.73 12.18 35.25 3.79
5208 11410 2.125512 GGCGGTGATCAGCTTCGT 60.126 61.111 21.73 0.00 35.25 3.85
5210 11412 1.446099 GCGGTGATCAGCTTCGTGA 60.446 57.895 21.73 0.00 0.00 4.35
5213 11415 1.469767 CGGTGATCAGCTTCGTGATGA 60.470 52.381 21.73 2.25 45.73 2.92
5217 11419 2.200067 GATCAGCTTCGTGATGACAGG 58.800 52.381 1.84 0.00 44.39 4.00
5218 11420 0.390340 TCAGCTTCGTGATGACAGGC 60.390 55.000 0.00 0.00 36.01 4.85
5219 11421 1.446792 AGCTTCGTGATGACAGGCG 60.447 57.895 0.00 0.00 32.75 5.52
5220 11422 1.738099 GCTTCGTGATGACAGGCGT 60.738 57.895 0.00 0.00 32.75 5.68
5221 11423 1.959899 GCTTCGTGATGACAGGCGTG 61.960 60.000 4.53 4.53 32.75 5.34
5222 11424 1.959899 CTTCGTGATGACAGGCGTGC 61.960 60.000 6.26 0.03 32.75 5.34
5223 11425 2.707529 TTCGTGATGACAGGCGTGCA 62.708 55.000 6.26 6.16 32.75 4.57
5224 11426 2.863153 GTGATGACAGGCGTGCAC 59.137 61.111 6.82 6.82 0.00 4.57
5226 11428 1.960763 TGATGACAGGCGTGCACAC 60.961 57.895 18.64 7.05 0.00 3.82
5236 11438 3.642755 GTGCACACGTCCTGGAAG 58.357 61.111 13.17 8.14 0.00 3.46
5237 11439 1.069090 GTGCACACGTCCTGGAAGA 59.931 57.895 16.67 0.00 34.07 2.87
5238 11440 0.531974 GTGCACACGTCCTGGAAGAA 60.532 55.000 16.67 0.00 34.07 2.52
5240 11442 1.228657 GCACACGTCCTGGAAGAACC 61.229 60.000 16.67 0.00 34.07 3.62
5242 11444 0.106149 ACACGTCCTGGAAGAACCAC 59.894 55.000 16.67 0.00 44.64 4.16
5246 11448 0.472471 GTCCTGGAAGAACCACCACA 59.528 55.000 0.00 0.00 44.64 4.17
5248 11450 1.073763 TCCTGGAAGAACCACCACATG 59.926 52.381 0.00 0.00 44.64 3.21
5256 11458 4.664062 CCACCACATGGGCCTAAG 57.336 61.111 4.53 0.00 45.95 2.18
5259 11461 0.749454 CACCACATGGGCCTAAGCTC 60.749 60.000 4.53 0.00 42.05 4.09
5260 11462 1.152881 CCACATGGGCCTAAGCTCC 60.153 63.158 4.53 0.00 39.53 4.70
5262 11464 2.592861 CATGGGCCTAAGCTCCGC 60.593 66.667 4.53 0.00 39.53 5.54
5263 11465 4.241555 ATGGGCCTAAGCTCCGCG 62.242 66.667 4.53 0.00 39.53 6.46
5266 11468 4.593864 GGCCTAAGCTCCGCGGAG 62.594 72.222 43.74 43.74 44.56 4.63
5275 11477 2.979130 CTCCGCGGAGAAATCTTCC 58.021 57.895 45.28 0.00 44.53 3.46
5276 11478 0.461961 CTCCGCGGAGAAATCTTCCT 59.538 55.000 45.28 0.00 44.53 3.36
5277 11479 0.902531 TCCGCGGAGAAATCTTCCTT 59.097 50.000 27.28 0.00 0.00 3.36
5278 11480 1.009829 CCGCGGAGAAATCTTCCTTG 58.990 55.000 24.07 0.00 0.00 3.61
5280 11482 0.735471 GCGGAGAAATCTTCCTTGGC 59.265 55.000 0.00 0.00 0.00 4.52
5281 11483 1.383523 CGGAGAAATCTTCCTTGGCC 58.616 55.000 0.00 0.00 0.00 5.36
5282 11484 1.769026 GGAGAAATCTTCCTTGGCCC 58.231 55.000 0.00 0.00 0.00 5.80
5284 11486 0.034089 AGAAATCTTCCTTGGCCCGG 60.034 55.000 0.00 0.00 0.00 5.73
5285 11487 0.323451 GAAATCTTCCTTGGCCCGGT 60.323 55.000 0.00 0.00 0.00 5.28
5286 11488 0.114364 AAATCTTCCTTGGCCCGGTT 59.886 50.000 0.00 0.00 0.00 4.44
5287 11489 0.611896 AATCTTCCTTGGCCCGGTTG 60.612 55.000 0.00 0.00 0.00 3.77
5288 11490 1.497309 ATCTTCCTTGGCCCGGTTGA 61.497 55.000 0.00 4.48 0.00 3.18
5289 11491 1.675641 CTTCCTTGGCCCGGTTGAG 60.676 63.158 0.00 0.00 0.00 3.02
5290 11492 2.411765 CTTCCTTGGCCCGGTTGAGT 62.412 60.000 0.00 0.00 0.00 3.41
5291 11493 2.002018 TTCCTTGGCCCGGTTGAGTT 62.002 55.000 0.00 0.00 0.00 3.01
5293 11495 1.524008 CCTTGGCCCGGTTGAGTTTC 61.524 60.000 0.00 0.00 0.00 2.78
5295 11497 3.733960 GGCCCGGTTGAGTTTCGC 61.734 66.667 0.00 0.00 0.00 4.70
5296 11498 3.733960 GCCCGGTTGAGTTTCGCC 61.734 66.667 0.00 0.00 0.00 5.54
5297 11499 2.032071 CCCGGTTGAGTTTCGCCT 59.968 61.111 0.00 0.00 0.00 5.52
5298 11500 2.033194 CCCGGTTGAGTTTCGCCTC 61.033 63.158 0.00 0.00 0.00 4.70
5299 11501 2.033194 CCGGTTGAGTTTCGCCTCC 61.033 63.158 0.00 0.00 0.00 4.30
5301 11503 1.072505 GGTTGAGTTTCGCCTCCCA 59.927 57.895 0.00 0.00 0.00 4.37
5304 11506 1.415672 TTGAGTTTCGCCTCCCACCT 61.416 55.000 0.00 0.00 0.00 4.00
5305 11507 1.375326 GAGTTTCGCCTCCCACCTT 59.625 57.895 0.00 0.00 0.00 3.50
5307 11509 0.250770 AGTTTCGCCTCCCACCTTTC 60.251 55.000 0.00 0.00 0.00 2.62
5309 11511 2.047213 TTTCGCCTCCCACCTTTCGT 62.047 55.000 0.00 0.00 0.00 3.85
5310 11512 2.434359 CGCCTCCCACCTTTCGTC 60.434 66.667 0.00 0.00 0.00 4.20
5311 11513 2.434359 GCCTCCCACCTTTCGTCG 60.434 66.667 0.00 0.00 0.00 5.12
5312 11514 2.939261 GCCTCCCACCTTTCGTCGA 61.939 63.158 0.00 0.00 0.00 4.20
5314 11516 1.080025 CTCCCACCTTTCGTCGACC 60.080 63.158 10.58 0.00 0.00 4.79
5315 11517 1.812686 CTCCCACCTTTCGTCGACCA 61.813 60.000 10.58 0.00 0.00 4.02
5316 11518 1.070105 CCCACCTTTCGTCGACCAA 59.930 57.895 10.58 0.00 0.00 3.67
5317 11519 0.949105 CCCACCTTTCGTCGACCAAG 60.949 60.000 10.58 12.10 0.00 3.61
5318 11520 1.566018 CCACCTTTCGTCGACCAAGC 61.566 60.000 10.58 0.00 0.00 4.01
5319 11521 0.878523 CACCTTTCGTCGACCAAGCA 60.879 55.000 10.58 0.00 0.00 3.91
5320 11522 0.878961 ACCTTTCGTCGACCAAGCAC 60.879 55.000 10.58 0.00 0.00 4.40
5321 11523 0.600255 CCTTTCGTCGACCAAGCACT 60.600 55.000 10.58 0.00 0.00 4.40
5322 11524 1.217882 CTTTCGTCGACCAAGCACTT 58.782 50.000 10.58 0.00 0.00 3.16
5323 11525 1.597663 CTTTCGTCGACCAAGCACTTT 59.402 47.619 10.58 0.00 0.00 2.66
5324 11526 0.934496 TTCGTCGACCAAGCACTTTG 59.066 50.000 10.58 0.00 36.50 2.77
5326 11528 1.148310 CGTCGACCAAGCACTTTGAT 58.852 50.000 10.58 0.00 39.21 2.57
5330 11532 2.086869 CGACCAAGCACTTTGATCCAT 58.913 47.619 0.00 0.00 39.21 3.41
5331 11533 3.055458 TCGACCAAGCACTTTGATCCATA 60.055 43.478 0.00 0.00 39.21 2.74
5332 11534 3.063997 CGACCAAGCACTTTGATCCATAC 59.936 47.826 0.00 0.00 39.21 2.39
5333 11535 4.265073 GACCAAGCACTTTGATCCATACT 58.735 43.478 0.00 0.00 39.21 2.12
5334 11536 4.666512 ACCAAGCACTTTGATCCATACTT 58.333 39.130 0.00 0.00 39.21 2.24
5337 11539 3.960571 AGCACTTTGATCCATACTTGCT 58.039 40.909 0.00 0.00 34.27 3.91
5338 11540 4.338879 AGCACTTTGATCCATACTTGCTT 58.661 39.130 0.00 0.00 35.57 3.91
5339 11541 4.397417 AGCACTTTGATCCATACTTGCTTC 59.603 41.667 0.00 0.00 35.57 3.86
5340 11542 4.156556 GCACTTTGATCCATACTTGCTTCA 59.843 41.667 0.00 0.00 0.00 3.02
5343 11545 6.149973 CACTTTGATCCATACTTGCTTCAAGA 59.850 38.462 12.89 0.00 43.42 3.02
5345 11547 6.932356 TTGATCCATACTTGCTTCAAGATC 57.068 37.500 12.89 6.27 43.42 2.75
5347 11549 5.131642 TGATCCATACTTGCTTCAAGATCCT 59.868 40.000 12.89 0.00 43.42 3.24
5348 11550 5.028549 TCCATACTTGCTTCAAGATCCTC 57.971 43.478 12.89 0.00 43.42 3.71
5349 11551 4.133078 CCATACTTGCTTCAAGATCCTCC 58.867 47.826 12.89 0.00 43.42 4.30
5350 11552 2.797177 ACTTGCTTCAAGATCCTCCC 57.203 50.000 12.89 0.00 43.42 4.30
5351 11553 1.283321 ACTTGCTTCAAGATCCTCCCC 59.717 52.381 12.89 0.00 43.42 4.81
5352 11554 1.283029 CTTGCTTCAAGATCCTCCCCA 59.717 52.381 0.50 0.00 43.42 4.96
5353 11555 0.914644 TGCTTCAAGATCCTCCCCAG 59.085 55.000 0.00 0.00 0.00 4.45
5354 11556 0.182299 GCTTCAAGATCCTCCCCAGG 59.818 60.000 0.00 0.00 42.01 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 3.365291 TAGACGCATGGGCACGACC 62.365 63.158 10.10 0.00 41.24 4.79
96 98 1.884075 AAGTAGACGCATGGGCACGA 61.884 55.000 10.10 0.00 41.24 4.35
98 100 1.287425 GTAAGTAGACGCATGGGCAC 58.713 55.000 10.10 5.72 41.24 5.01
120 122 1.294659 GGCAGCAGGTTTCTCACTCG 61.295 60.000 0.00 0.00 0.00 4.18
128 130 2.226962 ATTCATCTGGCAGCAGGTTT 57.773 45.000 10.34 0.00 0.00 3.27
146 148 5.685511 GCAACATCTTAACGACAACAACAAT 59.314 36.000 0.00 0.00 0.00 2.71
147 149 5.031578 GCAACATCTTAACGACAACAACAA 58.968 37.500 0.00 0.00 0.00 2.83
148 150 4.496673 GGCAACATCTTAACGACAACAACA 60.497 41.667 0.00 0.00 0.00 3.33
149 151 3.972502 GGCAACATCTTAACGACAACAAC 59.027 43.478 0.00 0.00 0.00 3.32
150 152 3.303461 CGGCAACATCTTAACGACAACAA 60.303 43.478 0.00 0.00 0.00 2.83
151 153 2.222213 CGGCAACATCTTAACGACAACA 59.778 45.455 0.00 0.00 0.00 3.33
152 154 2.477375 TCGGCAACATCTTAACGACAAC 59.523 45.455 0.00 0.00 0.00 3.32
153 155 2.477375 GTCGGCAACATCTTAACGACAA 59.523 45.455 9.75 0.00 46.84 3.18
154 156 2.063266 GTCGGCAACATCTTAACGACA 58.937 47.619 9.75 0.00 46.84 4.35
155 157 2.782198 GTCGGCAACATCTTAACGAC 57.218 50.000 0.00 0.00 42.79 4.34
156 158 2.063266 GTGTCGGCAACATCTTAACGA 58.937 47.619 0.00 0.00 40.80 3.85
157 159 1.795872 TGTGTCGGCAACATCTTAACG 59.204 47.619 0.00 0.00 40.80 3.18
158 160 5.539582 TTATGTGTCGGCAACATCTTAAC 57.460 39.130 8.09 0.00 40.80 2.01
159 161 6.404184 CCAATTATGTGTCGGCAACATCTTAA 60.404 38.462 8.09 0.00 40.80 1.85
160 162 5.065859 CCAATTATGTGTCGGCAACATCTTA 59.934 40.000 8.09 0.00 40.80 2.10
161 163 4.142403 CCAATTATGTGTCGGCAACATCTT 60.142 41.667 8.09 2.80 40.80 2.40
162 164 3.378112 CCAATTATGTGTCGGCAACATCT 59.622 43.478 8.09 0.00 40.80 2.90
163 165 3.128589 ACCAATTATGTGTCGGCAACATC 59.871 43.478 8.09 0.00 40.80 3.06
164 166 3.088532 ACCAATTATGTGTCGGCAACAT 58.911 40.909 0.00 0.16 40.80 2.71
165 167 2.486203 GACCAATTATGTGTCGGCAACA 59.514 45.455 0.00 0.00 34.78 3.33
166 168 2.475519 CGACCAATTATGTGTCGGCAAC 60.476 50.000 0.00 0.00 41.96 4.17
167 169 1.735018 CGACCAATTATGTGTCGGCAA 59.265 47.619 0.00 0.00 41.96 4.52
176 178 2.543848 CCACCATCGTCGACCAATTATG 59.456 50.000 10.58 6.29 0.00 1.90
186 188 1.705337 GCAACCATCCACCATCGTCG 61.705 60.000 0.00 0.00 0.00 5.12
197 199 0.179111 TCTGTCGATCGGCAACCATC 60.179 55.000 24.27 1.47 0.00 3.51
198 200 0.465705 ATCTGTCGATCGGCAACCAT 59.534 50.000 24.27 12.71 0.00 3.55
206 208 1.048494 GTCGCATCATCTGTCGATCG 58.952 55.000 9.36 9.36 36.37 3.69
207 209 2.125461 TGTCGCATCATCTGTCGATC 57.875 50.000 0.00 0.00 36.37 3.69
208 210 2.196749 GTTGTCGCATCATCTGTCGAT 58.803 47.619 0.00 0.00 36.37 3.59
209 211 1.067915 TGTTGTCGCATCATCTGTCGA 60.068 47.619 0.00 0.00 33.21 4.20
224 226 5.466728 CGGCATAGATATGTAGCTTTGTTGT 59.533 40.000 0.00 0.00 36.11 3.32
246 353 2.203972 CTCCACACAGCATTTGCCGG 62.204 60.000 0.00 0.00 43.38 6.13
252 359 0.767375 ACTGGTCTCCACACAGCATT 59.233 50.000 0.00 0.00 35.70 3.56
253 360 0.035881 CACTGGTCTCCACACAGCAT 59.964 55.000 0.00 0.00 35.70 3.79
267 374 0.400213 TGTAGGCAAAGGTCCACTGG 59.600 55.000 0.00 0.00 0.00 4.00
287 394 1.569479 GAGCTTTGGCGACACACCTC 61.569 60.000 0.00 0.00 42.67 3.85
291 398 1.891919 GTGGAGCTTTGGCGACACA 60.892 57.895 0.00 0.00 43.76 3.72
297 404 3.365265 CCACGGTGGAGCTTTGGC 61.365 66.667 22.77 0.00 40.96 4.52
317 424 4.374702 GCGCGGCAACTGTCACTG 62.375 66.667 8.83 0.00 0.00 3.66
329 436 2.511373 TCAATACAGCCTGCGCGG 60.511 61.111 9.96 9.96 41.18 6.46
330 437 1.485838 CTCTCAATACAGCCTGCGCG 61.486 60.000 0.00 0.00 41.18 6.86
331 438 1.770085 GCTCTCAATACAGCCTGCGC 61.770 60.000 0.00 0.00 0.00 6.09
332 439 0.460811 TGCTCTCAATACAGCCTGCG 60.461 55.000 0.00 0.00 34.47 5.18
333 440 1.134580 TCTGCTCTCAATACAGCCTGC 60.135 52.381 0.00 0.00 34.47 4.85
334 441 2.168106 ACTCTGCTCTCAATACAGCCTG 59.832 50.000 0.00 0.00 34.47 4.85
335 442 2.465813 ACTCTGCTCTCAATACAGCCT 58.534 47.619 0.00 0.00 34.47 4.58
336 443 2.977772 ACTCTGCTCTCAATACAGCC 57.022 50.000 0.00 0.00 34.47 4.85
337 444 4.671250 GCAAAACTCTGCTCTCAATACAGC 60.671 45.833 0.00 0.00 39.34 4.40
338 445 4.967437 GCAAAACTCTGCTCTCAATACAG 58.033 43.478 0.00 0.00 39.34 2.74
384 491 6.289834 TCAGCCACATCTCTACTACTACTAC 58.710 44.000 0.00 0.00 0.00 2.73
385 492 6.496144 TCAGCCACATCTCTACTACTACTA 57.504 41.667 0.00 0.00 0.00 1.82
386 493 5.373222 CTCAGCCACATCTCTACTACTACT 58.627 45.833 0.00 0.00 0.00 2.57
407 514 6.429385 CCTTGAGGTTCCATTGATATAAGCTC 59.571 42.308 0.00 0.00 43.40 4.09
408 515 6.302269 CCTTGAGGTTCCATTGATATAAGCT 58.698 40.000 0.00 0.00 32.71 3.74
409 516 6.566197 CCTTGAGGTTCCATTGATATAAGC 57.434 41.667 0.00 0.00 0.00 3.09
427 534 6.320926 TGAATGTCTTGTTTGAATCACCTTGA 59.679 34.615 0.00 0.00 0.00 3.02
443 550 6.638610 TCATTTGGTGTTGTTTGAATGTCTT 58.361 32.000 0.00 0.00 0.00 3.01
444 551 6.219417 TCATTTGGTGTTGTTTGAATGTCT 57.781 33.333 0.00 0.00 0.00 3.41
445 552 7.481275 AATCATTTGGTGTTGTTTGAATGTC 57.519 32.000 0.00 0.00 0.00 3.06
446 553 6.200665 CGAATCATTTGGTGTTGTTTGAATGT 59.799 34.615 0.00 0.00 0.00 2.71
447 554 6.200665 ACGAATCATTTGGTGTTGTTTGAATG 59.799 34.615 0.00 0.00 0.00 2.67
448 555 6.200665 CACGAATCATTTGGTGTTGTTTGAAT 59.799 34.615 0.00 0.00 36.95 2.57
449 556 5.518128 CACGAATCATTTGGTGTTGTTTGAA 59.482 36.000 0.00 0.00 36.95 2.69
450 557 5.039984 CACGAATCATTTGGTGTTGTTTGA 58.960 37.500 0.00 0.00 36.95 2.69
451 558 4.208873 CCACGAATCATTTGGTGTTGTTTG 59.791 41.667 0.00 0.00 39.23 2.93
452 559 4.098654 TCCACGAATCATTTGGTGTTGTTT 59.901 37.500 0.00 0.00 39.23 2.83
453 560 3.634448 TCCACGAATCATTTGGTGTTGTT 59.366 39.130 0.00 0.00 39.23 2.83
454 561 3.218453 TCCACGAATCATTTGGTGTTGT 58.782 40.909 0.00 0.00 39.23 3.32
455 562 3.913548 TCCACGAATCATTTGGTGTTG 57.086 42.857 0.00 0.00 39.23 3.33
456 563 4.522405 TGAATCCACGAATCATTTGGTGTT 59.478 37.500 0.00 0.00 39.23 3.32
471 578 8.892723 TGTATTATGTTCTCACAATGAATCCAC 58.107 33.333 0.00 0.00 36.16 4.02
480 587 6.683715 TCGAGTGTGTATTATGTTCTCACAA 58.316 36.000 0.00 0.00 39.99 3.33
491 598 5.720202 AGCAAATCACTCGAGTGTGTATTA 58.280 37.500 37.21 22.16 45.76 0.98
518 625 9.360901 AGAAGCTCATGACTACAGATAATCTAA 57.639 33.333 0.00 0.00 0.00 2.10
519 626 8.932434 AGAAGCTCATGACTACAGATAATCTA 57.068 34.615 0.00 0.00 0.00 1.98
589 698 8.807118 ACATCCGTATGTGATTCATAGTAGAAT 58.193 33.333 0.00 0.00 44.79 2.40
591 700 7.761038 ACATCCGTATGTGATTCATAGTAGA 57.239 36.000 0.00 0.00 44.79 2.59
595 704 7.965655 GTCTCTACATCCGTATGTGATTCATAG 59.034 40.741 3.56 0.00 45.99 2.23
596 705 7.094334 GGTCTCTACATCCGTATGTGATTCATA 60.094 40.741 3.56 0.00 45.99 2.15
597 706 6.294787 GGTCTCTACATCCGTATGTGATTCAT 60.295 42.308 3.56 0.00 45.99 2.57
599 708 5.241949 AGGTCTCTACATCCGTATGTGATTC 59.758 44.000 3.56 0.00 45.99 2.52
601 710 4.520874 CAGGTCTCTACATCCGTATGTGAT 59.479 45.833 3.56 0.00 45.99 3.06
603 712 3.883489 TCAGGTCTCTACATCCGTATGTG 59.117 47.826 3.56 0.00 45.99 3.21
605 714 3.058846 CGTCAGGTCTCTACATCCGTATG 60.059 52.174 0.00 0.00 39.17 2.39
607 716 2.558378 CGTCAGGTCTCTACATCCGTA 58.442 52.381 0.00 0.00 0.00 4.02
608 717 1.380524 CGTCAGGTCTCTACATCCGT 58.619 55.000 0.00 0.00 0.00 4.69
609 718 0.029567 GCGTCAGGTCTCTACATCCG 59.970 60.000 0.00 0.00 0.00 4.18
610 719 0.029567 CGCGTCAGGTCTCTACATCC 59.970 60.000 0.00 0.00 0.00 3.51
611 720 0.029567 CCGCGTCAGGTCTCTACATC 59.970 60.000 4.92 0.00 0.00 3.06
686 876 2.156098 TCCAGCTTGTTCAGGGGCT 61.156 57.895 0.00 0.00 35.23 5.19
687 877 1.973812 GTCCAGCTTGTTCAGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
688 878 1.672356 CGTCCAGCTTGTTCAGGGG 60.672 63.158 0.00 0.00 0.00 4.79
689 879 1.672356 CCGTCCAGCTTGTTCAGGG 60.672 63.158 0.00 0.00 0.00 4.45
690 880 2.328099 GCCGTCCAGCTTGTTCAGG 61.328 63.158 0.00 0.00 0.00 3.86
691 881 2.328099 GGCCGTCCAGCTTGTTCAG 61.328 63.158 0.00 0.00 0.00 3.02
692 882 2.281484 GGCCGTCCAGCTTGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
693 883 3.056328 GGGCCGTCCAGCTTGTTC 61.056 66.667 0.00 0.00 35.00 3.18
694 884 3.884774 TGGGCCGTCCAGCTTGTT 61.885 61.111 0.00 0.00 41.46 2.83
705 895 3.643595 TTGCTGGGAATCTGGGCCG 62.644 63.158 0.00 0.00 0.00 6.13
712 902 1.133853 AGATGCTCCTTGCTGGGAATC 60.134 52.381 0.42 2.21 43.37 2.52
713 903 0.924823 AGATGCTCCTTGCTGGGAAT 59.075 50.000 0.42 0.00 43.37 3.01
714 904 1.210478 GTAGATGCTCCTTGCTGGGAA 59.790 52.381 0.42 0.00 43.37 3.97
715 905 0.833287 GTAGATGCTCCTTGCTGGGA 59.167 55.000 0.00 0.00 43.37 4.37
716 906 0.543277 TGTAGATGCTCCTTGCTGGG 59.457 55.000 0.00 0.00 43.37 4.45
717 907 1.474677 CCTGTAGATGCTCCTTGCTGG 60.475 57.143 0.00 0.00 43.37 4.85
718 908 1.950828 CCTGTAGATGCTCCTTGCTG 58.049 55.000 0.00 0.00 43.37 4.41
720 910 0.817229 GGCCTGTAGATGCTCCTTGC 60.817 60.000 0.00 0.00 43.25 4.01
725 915 1.227793 GCTGGGCCTGTAGATGCTC 60.228 63.158 12.33 0.00 0.00 4.26
732 922 2.490148 CGATCTCGCTGGGCCTGTA 61.490 63.158 12.33 0.17 0.00 2.74
733 923 3.842923 CGATCTCGCTGGGCCTGT 61.843 66.667 12.33 0.00 0.00 4.00
742 932 2.376808 ATGGATGGAATCGATCTCGC 57.623 50.000 0.00 0.00 46.86 5.03
750 940 3.077359 CCTTTAGCGGATGGATGGAATC 58.923 50.000 0.00 0.00 44.55 2.52
751 941 2.815589 GCCTTTAGCGGATGGATGGAAT 60.816 50.000 0.00 0.00 0.00 3.01
752 942 1.476833 GCCTTTAGCGGATGGATGGAA 60.477 52.381 0.00 0.00 0.00 3.53
753 943 0.108585 GCCTTTAGCGGATGGATGGA 59.891 55.000 0.00 0.00 0.00 3.41
754 944 0.890996 GGCCTTTAGCGGATGGATGG 60.891 60.000 0.00 0.00 45.17 3.51
755 945 0.890996 GGGCCTTTAGCGGATGGATG 60.891 60.000 0.84 0.00 45.17 3.51
756 946 1.352622 TGGGCCTTTAGCGGATGGAT 61.353 55.000 4.53 0.00 45.17 3.41
757 947 1.567208 TTGGGCCTTTAGCGGATGGA 61.567 55.000 4.53 0.00 45.17 3.41
759 949 0.740737 CTTTGGGCCTTTAGCGGATG 59.259 55.000 4.53 0.00 45.17 3.51
760 950 0.623723 TCTTTGGGCCTTTAGCGGAT 59.376 50.000 4.53 0.00 45.17 4.18
761 951 0.035439 CTCTTTGGGCCTTTAGCGGA 60.035 55.000 4.53 0.00 45.17 5.54
764 954 0.676782 TCGCTCTTTGGGCCTTTAGC 60.677 55.000 4.53 7.84 42.60 3.09
766 956 0.676782 GCTCGCTCTTTGGGCCTTTA 60.677 55.000 4.53 0.00 0.00 1.85
768 958 2.360475 GCTCGCTCTTTGGGCCTT 60.360 61.111 4.53 0.00 0.00 4.35
769 959 4.767255 CGCTCGCTCTTTGGGCCT 62.767 66.667 4.53 0.00 0.00 5.19
770 960 4.760047 TCGCTCGCTCTTTGGGCC 62.760 66.667 0.00 0.00 0.00 5.80
771 961 2.742372 TTCGCTCGCTCTTTGGGC 60.742 61.111 0.00 0.00 0.00 5.36
772 962 2.103042 CCTTCGCTCGCTCTTTGGG 61.103 63.158 0.00 0.00 0.00 4.12
773 963 2.103042 CCCTTCGCTCGCTCTTTGG 61.103 63.158 0.00 0.00 0.00 3.28
774 964 2.103042 CCCCTTCGCTCGCTCTTTG 61.103 63.158 0.00 0.00 0.00 2.77
775 965 1.827399 TTCCCCTTCGCTCGCTCTTT 61.827 55.000 0.00 0.00 0.00 2.52
776 966 1.827399 TTTCCCCTTCGCTCGCTCTT 61.827 55.000 0.00 0.00 0.00 2.85
777 967 2.232298 CTTTCCCCTTCGCTCGCTCT 62.232 60.000 0.00 0.00 0.00 4.09
778 968 1.811679 CTTTCCCCTTCGCTCGCTC 60.812 63.158 0.00 0.00 0.00 5.03
779 969 1.827399 TTCTTTCCCCTTCGCTCGCT 61.827 55.000 0.00 0.00 0.00 4.93
780 970 0.953960 TTTCTTTCCCCTTCGCTCGC 60.954 55.000 0.00 0.00 0.00 5.03
781 971 1.079503 CTTTCTTTCCCCTTCGCTCG 58.920 55.000 0.00 0.00 0.00 5.03
782 972 2.474410 TCTTTCTTTCCCCTTCGCTC 57.526 50.000 0.00 0.00 0.00 5.03
783 973 2.372172 TCTTCTTTCTTTCCCCTTCGCT 59.628 45.455 0.00 0.00 0.00 4.93
784 974 2.744741 CTCTTCTTTCTTTCCCCTTCGC 59.255 50.000 0.00 0.00 0.00 4.70
785 975 4.273148 TCTCTTCTTTCTTTCCCCTTCG 57.727 45.455 0.00 0.00 0.00 3.79
786 976 5.048364 GCTTTCTCTTCTTTCTTTCCCCTTC 60.048 44.000 0.00 0.00 0.00 3.46
787 977 4.830046 GCTTTCTCTTCTTTCTTTCCCCTT 59.170 41.667 0.00 0.00 0.00 3.95
788 978 4.402829 GCTTTCTCTTCTTTCTTTCCCCT 58.597 43.478 0.00 0.00 0.00 4.79
789 979 3.508012 GGCTTTCTCTTCTTTCTTTCCCC 59.492 47.826 0.00 0.00 0.00 4.81
790 980 3.189495 CGGCTTTCTCTTCTTTCTTTCCC 59.811 47.826 0.00 0.00 0.00 3.97
791 981 3.815962 ACGGCTTTCTCTTCTTTCTTTCC 59.184 43.478 0.00 0.00 0.00 3.13
792 982 5.425577 AACGGCTTTCTCTTCTTTCTTTC 57.574 39.130 0.00 0.00 0.00 2.62
793 983 4.276183 GGAACGGCTTTCTCTTCTTTCTTT 59.724 41.667 3.61 0.00 34.26 2.52
794 984 3.815962 GGAACGGCTTTCTCTTCTTTCTT 59.184 43.478 3.61 0.00 34.26 2.52
795 985 3.403968 GGAACGGCTTTCTCTTCTTTCT 58.596 45.455 3.61 0.00 34.26 2.52
796 986 2.484651 GGGAACGGCTTTCTCTTCTTTC 59.515 50.000 3.61 0.00 31.04 2.62
797 987 2.106684 AGGGAACGGCTTTCTCTTCTTT 59.893 45.455 0.00 0.00 43.15 2.52
798 988 1.700186 AGGGAACGGCTTTCTCTTCTT 59.300 47.619 0.00 0.00 43.15 2.52
799 989 1.276705 GAGGGAACGGCTTTCTCTTCT 59.723 52.381 7.62 0.00 45.96 2.85
800 990 1.002087 TGAGGGAACGGCTTTCTCTTC 59.998 52.381 7.62 2.46 45.96 2.87
801 991 1.056660 TGAGGGAACGGCTTTCTCTT 58.943 50.000 7.62 0.00 45.96 2.85
803 993 1.892209 TTTGAGGGAACGGCTTTCTC 58.108 50.000 3.61 0.00 34.44 2.87
804 994 2.358322 TTTTGAGGGAACGGCTTTCT 57.642 45.000 3.61 0.00 34.26 2.52
834 1024 4.611943 GCGGCTTTCTCTTCTTTCTTTTT 58.388 39.130 0.00 0.00 0.00 1.94
835 1025 3.304057 CGCGGCTTTCTCTTCTTTCTTTT 60.304 43.478 0.00 0.00 0.00 2.27
836 1026 2.224314 CGCGGCTTTCTCTTCTTTCTTT 59.776 45.455 0.00 0.00 0.00 2.52
837 1027 1.801178 CGCGGCTTTCTCTTCTTTCTT 59.199 47.619 0.00 0.00 0.00 2.52
838 1028 1.270358 ACGCGGCTTTCTCTTCTTTCT 60.270 47.619 12.47 0.00 0.00 2.52
839 1029 1.127029 GACGCGGCTTTCTCTTCTTTC 59.873 52.381 12.47 0.00 0.00 2.62
840 1030 1.149148 GACGCGGCTTTCTCTTCTTT 58.851 50.000 12.47 0.00 0.00 2.52
841 1031 1.009389 CGACGCGGCTTTCTCTTCTT 61.009 55.000 11.76 0.00 0.00 2.52
842 1032 1.444553 CGACGCGGCTTTCTCTTCT 60.445 57.895 11.76 0.00 0.00 2.85
843 1033 1.406970 CTCGACGCGGCTTTCTCTTC 61.407 60.000 11.76 0.00 0.00 2.87
844 1034 1.444553 CTCGACGCGGCTTTCTCTT 60.445 57.895 11.76 0.00 0.00 2.85
845 1035 2.179517 CTCGACGCGGCTTTCTCT 59.820 61.111 11.76 0.00 0.00 3.10
846 1036 2.126424 ACTCGACGCGGCTTTCTC 60.126 61.111 11.76 0.00 0.00 2.87
847 1037 2.126424 GACTCGACGCGGCTTTCT 60.126 61.111 11.76 0.00 0.00 2.52
848 1038 3.533691 CGACTCGACGCGGCTTTC 61.534 66.667 11.76 1.75 0.00 2.62
849 1039 4.338539 ACGACTCGACGCGGCTTT 62.339 61.111 11.76 0.00 36.70 3.51
850 1040 4.755614 GACGACTCGACGCGGCTT 62.756 66.667 11.76 0.00 36.70 4.35
854 1044 4.219846 ATCGGACGACTCGACGCG 62.220 66.667 3.53 3.53 39.55 6.01
855 1045 2.648102 CATCGGACGACTCGACGC 60.648 66.667 5.20 0.00 39.55 5.19
856 1046 2.648102 GCATCGGACGACTCGACG 60.648 66.667 5.20 9.44 39.55 5.12
857 1047 2.648102 CGCATCGGACGACTCGAC 60.648 66.667 5.20 0.00 39.55 4.20
891 1081 1.196012 GAGGAGGAGATTTGGTCGGT 58.804 55.000 0.00 0.00 0.00 4.69
893 1083 1.137872 CAGGAGGAGGAGATTTGGTCG 59.862 57.143 0.00 0.00 0.00 4.79
894 1084 2.472029 TCAGGAGGAGGAGATTTGGTC 58.528 52.381 0.00 0.00 0.00 4.02
895 1085 2.649742 TCAGGAGGAGGAGATTTGGT 57.350 50.000 0.00 0.00 0.00 3.67
903 1097 1.203557 TGGGGAATTTCAGGAGGAGGA 60.204 52.381 0.00 0.00 0.00 3.71
1189 1421 1.686060 GGGAAGGGGAGATAGGGGGA 61.686 65.000 0.00 0.00 0.00 4.81
1191 1423 1.151788 GGGGAAGGGGAGATAGGGG 60.152 68.421 0.00 0.00 0.00 4.79
1193 1425 4.671033 GGGGGAAGGGGAGATAGG 57.329 66.667 0.00 0.00 0.00 2.57
1222 1464 0.596577 TACTAGCTAGGCGCCAATCG 59.403 55.000 31.54 14.45 40.39 3.34
1321 1573 3.438017 CTAGTGAGCAGGCGGCCTC 62.438 68.421 20.97 14.09 46.50 4.70
1369 1621 3.447586 TCTCCCGGTCTGAAATAGTCAAG 59.552 47.826 0.00 0.00 35.22 3.02
1375 1627 3.643237 AGACATCTCCCGGTCTGAAATA 58.357 45.455 0.00 0.00 42.49 1.40
1376 1628 2.472029 AGACATCTCCCGGTCTGAAAT 58.528 47.619 0.00 0.00 42.49 2.17
1387 1639 1.654317 CAGCAGCTGAAGACATCTCC 58.346 55.000 20.43 0.00 32.44 3.71
1388 1640 1.008329 GCAGCAGCTGAAGACATCTC 58.992 55.000 27.39 0.52 37.91 2.75
1416 1668 7.880713 TCCATCTGTACTAATCTCAGCTAGTAG 59.119 40.741 0.00 0.00 32.58 2.57
1433 1692 3.441101 AGCTACAACACCTCCATCTGTA 58.559 45.455 0.00 0.00 0.00 2.74
1434 1693 2.234908 GAGCTACAACACCTCCATCTGT 59.765 50.000 0.00 0.00 0.00 3.41
1435 1694 2.419297 GGAGCTACAACACCTCCATCTG 60.419 54.545 0.00 0.00 43.63 2.90
1436 1695 1.834263 GGAGCTACAACACCTCCATCT 59.166 52.381 0.00 0.00 43.63 2.90
1439 1706 1.729586 AAGGAGCTACAACACCTCCA 58.270 50.000 0.00 0.00 45.99 3.86
1444 1712 2.605580 GCAGCAAAAGGAGCTACAACAC 60.606 50.000 0.00 0.00 41.14 3.32
1480 1748 0.890542 TTCAGCACCAAAGCGAGCAT 60.891 50.000 0.00 0.00 40.15 3.79
1502 1770 4.224370 GGAGTAGTCCAATTCTGGTACCAA 59.776 45.833 17.11 1.69 43.97 3.67
1508 1776 1.139058 CCGGGAGTAGTCCAATTCTGG 59.861 57.143 18.49 5.99 46.07 3.86
1519 1787 3.854669 CCTGCCTGCCGGGAGTAG 61.855 72.222 22.54 18.19 46.51 2.57
1663 2138 1.469335 GGTCGACCTGGAGAACACCA 61.469 60.000 27.64 0.00 38.33 4.17
1664 2139 1.292541 GGTCGACCTGGAGAACACC 59.707 63.158 27.64 0.00 0.00 4.16
1665 2140 1.080705 CGGTCGACCTGGAGAACAC 60.081 63.158 30.92 2.03 0.00 3.32
1674 2149 1.183676 AAGCAGTAACCGGTCGACCT 61.184 55.000 30.92 16.13 0.00 3.85
1692 2167 3.292656 CCTGCTGAGGCTCGAGAA 58.707 61.111 18.75 2.41 39.59 2.87
1706 2181 0.176680 ACAAGCGTATCTGGAGCCTG 59.823 55.000 0.00 0.00 0.00 4.85
1707 2182 0.905357 AACAAGCGTATCTGGAGCCT 59.095 50.000 0.00 0.00 0.00 4.58
1708 2183 1.291132 GAACAAGCGTATCTGGAGCC 58.709 55.000 0.00 0.00 0.00 4.70
1709 2184 0.924090 CGAACAAGCGTATCTGGAGC 59.076 55.000 0.00 0.00 0.00 4.70
1815 2343 2.223688 CCATCTTCTAGACTCTGCCACG 60.224 54.545 0.00 0.00 0.00 4.94
1818 2348 1.759445 TGCCATCTTCTAGACTCTGCC 59.241 52.381 0.00 0.00 0.00 4.85
1832 2362 6.371548 TCAAGTAGATAACTGTGTTTGCCATC 59.628 38.462 0.00 0.00 38.88 3.51
1851 2381 9.066892 GTATTCAGAAATGGCCATATTCAAGTA 57.933 33.333 27.65 18.96 0.00 2.24
1860 2390 2.426268 GGGGGTATTCAGAAATGGCCAT 60.426 50.000 14.09 14.09 0.00 4.40
1893 2423 3.319972 CCACCCTTTGCAGGATATGATTG 59.680 47.826 0.00 0.00 44.19 2.67
1918 2448 0.320697 ACCCGACCAGCTTTAGACAC 59.679 55.000 0.00 0.00 0.00 3.67
1936 2466 7.965107 ACGATCTTATCAAATCAAGAAAGCAAC 59.035 33.333 0.00 0.00 34.61 4.17
1949 2479 6.321717 GCCAACAAATCACGATCTTATCAAA 58.678 36.000 0.00 0.00 0.00 2.69
1976 2547 4.268687 GGAAGCCATAGCGATCCG 57.731 61.111 0.00 0.00 46.67 4.18
1986 2557 4.724399 TCAAACTTATGACAAGGAAGCCA 58.276 39.130 0.00 0.00 0.00 4.75
2014 2586 7.651304 CTGATAGTAAGTAGCAGATGGAAACAG 59.349 40.741 0.00 0.00 46.48 3.16
2051 2624 3.181445 ACATCAAGTTACAGCACCTCCAA 60.181 43.478 0.00 0.00 0.00 3.53
2140 2714 5.514500 TTAACTAAGGTTTCCCTGCTGAT 57.486 39.130 0.00 0.00 41.56 2.90
2202 2779 2.358737 CCCCGCACAGTGGAAGAC 60.359 66.667 1.84 0.00 34.74 3.01
2233 2810 9.607988 TCATCTAAACTTTTTGACACTGAGTAA 57.392 29.630 0.00 0.00 0.00 2.24
2234 2811 9.607988 TTCATCTAAACTTTTTGACACTGAGTA 57.392 29.630 0.00 0.00 0.00 2.59
2235 2812 8.506168 TTCATCTAAACTTTTTGACACTGAGT 57.494 30.769 0.00 0.00 0.00 3.41
2239 2816 8.956426 TGTTCTTCATCTAAACTTTTTGACACT 58.044 29.630 0.00 0.00 0.00 3.55
2274 2854 7.158021 TGAAAGAAACAACCAAATTCAAGTGT 58.842 30.769 0.00 0.00 0.00 3.55
2294 2874 7.485277 GGATATGACTCGTATCGGTAATGAAAG 59.515 40.741 10.82 0.00 34.28 2.62
2298 2878 6.438259 AGGATATGACTCGTATCGGTAATG 57.562 41.667 10.82 0.00 34.28 1.90
2309 2889 5.359756 TCATGGTTTGAAGGATATGACTCG 58.640 41.667 0.00 0.00 0.00 4.18
2327 2907 6.206243 CCAAGCAGATTTAGACCTTATCATGG 59.794 42.308 0.00 0.00 0.00 3.66
2336 2916 3.507622 AGCAAACCAAGCAGATTTAGACC 59.492 43.478 0.00 0.00 0.00 3.85
2348 2933 4.747810 ACAAGTCAAGAAAGCAAACCAAG 58.252 39.130 0.00 0.00 0.00 3.61
2370 2955 3.677700 CGACCACCAAATCACGATCCTAA 60.678 47.826 0.00 0.00 0.00 2.69
2491 3076 8.208718 TGGCTAGTAAAAGTGCAGTATATTTG 57.791 34.615 0.00 0.00 0.00 2.32
2547 3133 6.510536 TGATATGTATGAACTCAGCTGTCAG 58.489 40.000 14.67 7.28 0.00 3.51
2955 3569 8.567948 CAAGCAAGAGATAAAGGTAAGAACAAA 58.432 33.333 0.00 0.00 0.00 2.83
3217 3838 0.257039 ATCAACAGGGTCATCAGGGC 59.743 55.000 0.00 0.00 0.00 5.19
3254 3875 1.606668 GTTTCTTCATGCACAACGGGA 59.393 47.619 0.00 0.00 0.00 5.14
3255 3876 1.335872 GGTTTCTTCATGCACAACGGG 60.336 52.381 0.00 0.00 0.00 5.28
3256 3877 1.336440 TGGTTTCTTCATGCACAACGG 59.664 47.619 0.00 0.00 0.00 4.44
3257 3878 2.772568 TGGTTTCTTCATGCACAACG 57.227 45.000 0.00 0.00 0.00 4.10
3403 4026 7.650504 CAGAATCATGAACTTGCAAGAGAAAAA 59.349 33.333 32.50 13.57 0.00 1.94
3593 4217 9.246670 ACACAAATGGAATTCAGAGATAATTCA 57.753 29.630 7.93 0.00 42.54 2.57
3610 4234 3.052036 GTGCAGCAAACTACACAAATGG 58.948 45.455 0.00 0.00 39.59 3.16
3820 4458 9.690913 AGATGAAATAAAGTCTTCATGATTCCA 57.309 29.630 0.00 0.00 41.29 3.53
3830 4468 8.604890 GCGCTAACTAAGATGAAATAAAGTCTT 58.395 33.333 0.00 0.00 35.32 3.01
3854 4492 4.870426 AGGTGTTGTAAGTCATAAGATGCG 59.130 41.667 0.00 0.00 0.00 4.73
3976 4614 5.472478 CAGCTATGTAGTGAATGCATGGAAT 59.528 40.000 0.00 0.00 34.96 3.01
4009 4733 2.080693 TCAAATTGTGCCTCGCGTTAT 58.919 42.857 5.77 0.00 0.00 1.89
4010 4734 1.514003 TCAAATTGTGCCTCGCGTTA 58.486 45.000 5.77 0.00 0.00 3.18
4011 4735 0.881118 ATCAAATTGTGCCTCGCGTT 59.119 45.000 5.77 0.00 0.00 4.84
4012 4736 0.168788 CATCAAATTGTGCCTCGCGT 59.831 50.000 5.77 0.00 0.00 6.01
4101 4825 1.135944 GTCGCAACTGCTAAAGGAAGC 60.136 52.381 0.00 0.00 43.08 3.86
4115 4839 4.935205 ACTATCAGCATAACAAAGTCGCAA 59.065 37.500 0.00 0.00 0.00 4.85
4119 4843 5.573146 GGCAACTATCAGCATAACAAAGTC 58.427 41.667 0.00 0.00 0.00 3.01
4305 5040 2.214920 GGGTGTCTGGAGGAACGGT 61.215 63.158 0.00 0.00 0.00 4.83
4437 5174 1.268948 GGGACGGTCGATGCTAGTTAC 60.269 57.143 1.43 0.00 0.00 2.50
4453 5199 6.183360 CGTTATAGTTTGAAATCACCAGGGAC 60.183 42.308 0.00 0.00 0.00 4.46
4475 5221 2.987547 TCCCGACTTCCGAGCGTT 60.988 61.111 0.00 0.00 41.76 4.84
4666 5439 3.545703 CCACAAATCAGGGACTATGGTC 58.454 50.000 0.00 0.00 36.02 4.02
4670 5443 1.837439 TCGCCACAAATCAGGGACTAT 59.163 47.619 0.00 0.00 36.02 2.12
4671 5444 1.207089 CTCGCCACAAATCAGGGACTA 59.793 52.381 0.00 0.00 36.02 2.59
4687 5470 4.259690 CCAGTATAACGCAAAAGTACTCGC 60.260 45.833 0.00 0.00 0.00 5.03
4701 5484 8.480501 TGATACAGGGAACTAAACCAGTATAAC 58.519 37.037 0.00 0.00 40.21 1.89
4707 6888 5.983720 CGTATGATACAGGGAACTAAACCAG 59.016 44.000 3.24 0.00 40.21 4.00
4731 6912 6.315393 CCATACAAACTACACCAGATAACCAC 59.685 42.308 0.00 0.00 0.00 4.16
4739 6920 3.682858 CGGAACCATACAAACTACACCAG 59.317 47.826 0.00 0.00 0.00 4.00
4754 6935 2.184533 ACCAGTGATGATACGGAACCA 58.815 47.619 0.00 0.00 0.00 3.67
4757 6938 6.462487 GGAATTCTACCAGTGATGATACGGAA 60.462 42.308 5.23 0.00 0.00 4.30
4763 6944 4.047166 TGGGGAATTCTACCAGTGATGAT 58.953 43.478 15.45 0.00 0.00 2.45
4782 6963 0.963962 AAGCAAGCATCAACAGTGGG 59.036 50.000 0.00 0.00 0.00 4.61
4791 6972 3.442977 AGTGGAGAATTCAAGCAAGCATC 59.557 43.478 8.44 0.00 0.00 3.91
4810 6991 1.233285 GGCTGCTCCACAAGACAGTG 61.233 60.000 0.00 0.00 39.21 3.66
4811 6992 1.072159 GGCTGCTCCACAAGACAGT 59.928 57.895 0.00 0.00 33.95 3.55
4812 6993 0.535780 TTGGCTGCTCCACAAGACAG 60.536 55.000 0.00 0.00 46.55 3.51
4813 6994 0.535780 CTTGGCTGCTCCACAAGACA 60.536 55.000 9.80 0.00 46.55 3.41
4814 6995 0.536006 ACTTGGCTGCTCCACAAGAC 60.536 55.000 18.82 0.00 46.55 3.01
4816 6997 1.896220 TAACTTGGCTGCTCCACAAG 58.104 50.000 12.74 12.74 46.55 3.16
4818 6999 2.229792 CTTTAACTTGGCTGCTCCACA 58.770 47.619 0.00 0.00 46.55 4.17
4819 7000 1.541588 CCTTTAACTTGGCTGCTCCAC 59.458 52.381 0.00 0.00 46.55 4.02
4820 7001 1.909700 CCTTTAACTTGGCTGCTCCA 58.090 50.000 0.00 0.00 44.85 3.86
4828 7009 2.695147 GGATGGATGGCCTTTAACTTGG 59.305 50.000 3.32 0.00 34.31 3.61
4829 7010 3.364549 TGGATGGATGGCCTTTAACTTG 58.635 45.455 3.32 0.00 34.31 3.16
4830 7011 3.756082 TGGATGGATGGCCTTTAACTT 57.244 42.857 3.32 0.00 34.31 2.66
4832 7013 3.513515 TGTTTGGATGGATGGCCTTTAAC 59.486 43.478 3.32 0.00 34.31 2.01
4833 7014 3.768757 CTGTTTGGATGGATGGCCTTTAA 59.231 43.478 3.32 0.00 34.31 1.52
4834 7015 3.011144 TCTGTTTGGATGGATGGCCTTTA 59.989 43.478 3.32 0.00 34.31 1.85
4835 7016 2.181975 CTGTTTGGATGGATGGCCTTT 58.818 47.619 3.32 0.00 34.31 3.11
4873 7132 5.930837 AAATTTCCCAACTGACAACTTGA 57.069 34.783 0.00 0.00 0.00 3.02
4896 7172 9.613428 TTGTTCGTTGAATCCAGATAGATTTAT 57.387 29.630 0.00 0.00 36.60 1.40
4897 7173 9.098355 CTTGTTCGTTGAATCCAGATAGATTTA 57.902 33.333 0.00 0.00 36.60 1.40
4898 7174 7.414540 GCTTGTTCGTTGAATCCAGATAGATTT 60.415 37.037 0.00 0.00 36.60 2.17
4899 7175 6.037610 GCTTGTTCGTTGAATCCAGATAGATT 59.962 38.462 0.00 0.00 39.19 2.40
4900 7176 5.525378 GCTTGTTCGTTGAATCCAGATAGAT 59.475 40.000 0.00 0.00 0.00 1.98
4901 7177 4.870426 GCTTGTTCGTTGAATCCAGATAGA 59.130 41.667 0.00 0.00 0.00 1.98
4902 7178 4.631377 TGCTTGTTCGTTGAATCCAGATAG 59.369 41.667 0.00 0.00 0.00 2.08
4903 7179 4.574892 TGCTTGTTCGTTGAATCCAGATA 58.425 39.130 0.00 0.00 0.00 1.98
4904 7180 3.411446 TGCTTGTTCGTTGAATCCAGAT 58.589 40.909 0.00 0.00 0.00 2.90
4905 7181 2.844946 TGCTTGTTCGTTGAATCCAGA 58.155 42.857 0.00 0.00 0.00 3.86
4928 7204 6.491394 AGTTCGAACGAAACAAAATGAATCA 58.509 32.000 21.87 0.00 35.75 2.57
4934 7210 5.032220 GGTTGAGTTCGAACGAAACAAAAT 58.968 37.500 31.75 13.65 35.88 1.82
4938 7214 2.605818 CTGGTTGAGTTCGAACGAAACA 59.394 45.455 31.75 28.02 35.75 2.83
4958 7234 4.500375 GGAATTTTGAGTGTTTCTGCTGCT 60.500 41.667 0.00 0.00 0.00 4.24
4978 7254 2.248280 AGTTGTACATGCGTGTGGAA 57.752 45.000 21.92 10.74 39.39 3.53
4995 7273 4.443598 GGATAGATTTCCAGCGGAAGAAGT 60.444 45.833 9.43 0.00 43.06 3.01
5040 7318 3.425162 AGTTCAGACAGGAATGGGAAC 57.575 47.619 0.00 0.00 35.95 3.62
5054 7332 5.635700 GGAGTTTCTGCTACTGTTAGTTCAG 59.364 44.000 0.00 0.00 40.80 3.02
5066 7344 3.394606 ACCCTTTTCTGGAGTTTCTGCTA 59.605 43.478 0.00 0.00 0.00 3.49
5074 7352 5.316987 CAACTGAATACCCTTTTCTGGAGT 58.683 41.667 0.00 0.00 0.00 3.85
5089 7367 0.244450 CGCATGGTTGGCAACTGAAT 59.756 50.000 27.77 16.74 37.61 2.57
5099 7377 3.672255 CTGCCGCTTCGCATGGTTG 62.672 63.158 0.00 0.00 38.30 3.77
5100 7378 3.434319 CTGCCGCTTCGCATGGTT 61.434 61.111 0.00 0.00 38.30 3.67
5113 7514 1.733399 GTGAACTCGACGGTCTGCC 60.733 63.158 6.57 0.00 0.00 4.85
5196 11398 2.417787 CCTGTCATCACGAAGCTGATCA 60.418 50.000 0.00 0.00 0.00 2.92
5199 11401 0.390340 GCCTGTCATCACGAAGCTGA 60.390 55.000 0.00 0.00 0.00 4.26
5207 11409 1.960763 TGTGCACGCCTGTCATCAC 60.961 57.895 13.13 0.00 0.00 3.06
5208 11410 1.960763 GTGTGCACGCCTGTCATCA 60.961 57.895 19.81 0.00 0.00 3.07
5219 11421 0.531974 TTCTTCCAGGACGTGTGCAC 60.532 55.000 10.75 10.75 0.00 4.57
5220 11422 0.531974 GTTCTTCCAGGACGTGTGCA 60.532 55.000 0.00 0.00 0.00 4.57
5221 11423 1.228657 GGTTCTTCCAGGACGTGTGC 61.229 60.000 0.00 0.00 35.97 4.57
5222 11424 0.105964 TGGTTCTTCCAGGACGTGTG 59.894 55.000 0.00 0.00 41.93 3.82
5223 11425 2.523440 TGGTTCTTCCAGGACGTGT 58.477 52.632 0.00 0.00 41.93 4.49
5231 11433 3.743714 CCATGTGGTGGTTCTTCCA 57.256 52.632 0.00 0.00 43.44 3.53
5240 11442 0.749454 GAGCTTAGGCCCATGTGGTG 60.749 60.000 0.00 0.00 39.73 4.17
5242 11444 1.152881 GGAGCTTAGGCCCATGTGG 60.153 63.158 0.00 0.00 39.73 4.17
5259 11461 1.009829 CAAGGAAGATTTCTCCGCGG 58.990 55.000 22.12 22.12 0.00 6.46
5260 11462 1.009829 CCAAGGAAGATTTCTCCGCG 58.990 55.000 0.00 0.00 0.00 6.46
5262 11464 1.383523 GGCCAAGGAAGATTTCTCCG 58.616 55.000 0.00 0.00 0.00 4.63
5263 11465 1.769026 GGGCCAAGGAAGATTTCTCC 58.231 55.000 4.39 0.00 0.00 3.71
5265 11467 0.034089 CCGGGCCAAGGAAGATTTCT 60.034 55.000 10.74 0.00 0.00 2.52
5266 11468 0.323451 ACCGGGCCAAGGAAGATTTC 60.323 55.000 21.64 0.00 0.00 2.17
5267 11469 0.114364 AACCGGGCCAAGGAAGATTT 59.886 50.000 21.64 3.82 0.00 2.17
5269 11471 1.000896 CAACCGGGCCAAGGAAGAT 60.001 57.895 21.64 3.83 0.00 2.40
5270 11472 2.124507 CTCAACCGGGCCAAGGAAGA 62.125 60.000 21.64 16.14 0.00 2.87
5271 11473 1.675641 CTCAACCGGGCCAAGGAAG 60.676 63.158 21.64 13.24 0.00 3.46
5272 11474 2.002018 AACTCAACCGGGCCAAGGAA 62.002 55.000 21.64 7.05 0.00 3.36
5273 11475 2.002018 AAACTCAACCGGGCCAAGGA 62.002 55.000 21.64 2.84 0.00 3.36
5274 11476 1.524008 GAAACTCAACCGGGCCAAGG 61.524 60.000 14.26 14.26 0.00 3.61
5275 11477 1.852067 CGAAACTCAACCGGGCCAAG 61.852 60.000 6.32 0.00 0.00 3.61
5276 11478 1.894756 CGAAACTCAACCGGGCCAA 60.895 57.895 6.32 0.00 0.00 4.52
5277 11479 2.281208 CGAAACTCAACCGGGCCA 60.281 61.111 6.32 0.00 0.00 5.36
5278 11480 3.733960 GCGAAACTCAACCGGGCC 61.734 66.667 6.32 0.00 0.00 5.80
5280 11482 2.032071 AGGCGAAACTCAACCGGG 59.968 61.111 6.32 0.00 0.00 5.73
5281 11483 2.033194 GGAGGCGAAACTCAACCGG 61.033 63.158 0.00 0.00 39.27 5.28
5282 11484 2.033194 GGGAGGCGAAACTCAACCG 61.033 63.158 0.00 0.00 39.27 4.44
5284 11486 1.235281 GGTGGGAGGCGAAACTCAAC 61.235 60.000 0.00 0.00 39.27 3.18
5285 11487 1.072505 GGTGGGAGGCGAAACTCAA 59.927 57.895 0.00 0.00 39.27 3.02
5286 11488 1.415672 AAGGTGGGAGGCGAAACTCA 61.416 55.000 0.00 0.00 39.27 3.41
5287 11489 0.250770 AAAGGTGGGAGGCGAAACTC 60.251 55.000 0.00 0.00 36.76 3.01
5288 11490 0.250770 GAAAGGTGGGAGGCGAAACT 60.251 55.000 0.00 0.00 0.00 2.66
5289 11491 1.574702 CGAAAGGTGGGAGGCGAAAC 61.575 60.000 0.00 0.00 0.00 2.78
5290 11492 1.302192 CGAAAGGTGGGAGGCGAAA 60.302 57.895 0.00 0.00 0.00 3.46
5291 11493 2.345991 CGAAAGGTGGGAGGCGAA 59.654 61.111 0.00 0.00 0.00 4.70
5293 11495 2.434359 GACGAAAGGTGGGAGGCG 60.434 66.667 0.00 0.00 0.00 5.52
5295 11497 1.080025 GTCGACGAAAGGTGGGAGG 60.080 63.158 0.00 0.00 0.00 4.30
5296 11498 1.080025 GGTCGACGAAAGGTGGGAG 60.080 63.158 9.92 0.00 0.00 4.30
5297 11499 1.401318 TTGGTCGACGAAAGGTGGGA 61.401 55.000 10.81 0.00 0.00 4.37
5298 11500 0.949105 CTTGGTCGACGAAAGGTGGG 60.949 60.000 14.13 0.00 0.00 4.61
5299 11501 1.566018 GCTTGGTCGACGAAAGGTGG 61.566 60.000 23.30 10.64 0.00 4.61
5301 11503 0.878961 GTGCTTGGTCGACGAAAGGT 60.879 55.000 23.30 0.00 0.00 3.50
5304 11506 1.329292 CAAAGTGCTTGGTCGACGAAA 59.671 47.619 14.13 8.14 0.00 3.46
5305 11507 0.934496 CAAAGTGCTTGGTCGACGAA 59.066 50.000 12.62 12.62 0.00 3.85
5307 11509 1.126846 GATCAAAGTGCTTGGTCGACG 59.873 52.381 9.92 0.00 35.47 5.12
5309 11511 1.071542 TGGATCAAAGTGCTTGGTCGA 59.928 47.619 0.00 0.00 44.92 4.20
5310 11512 1.522668 TGGATCAAAGTGCTTGGTCG 58.477 50.000 0.00 0.00 44.92 4.79
5311 11513 4.265073 AGTATGGATCAAAGTGCTTGGTC 58.735 43.478 0.00 0.00 43.48 4.02
5312 11514 4.307032 AGTATGGATCAAAGTGCTTGGT 57.693 40.909 0.00 0.00 35.56 3.67
5314 11516 4.157289 AGCAAGTATGGATCAAAGTGCTTG 59.843 41.667 0.00 4.05 37.84 4.01
5315 11517 4.338879 AGCAAGTATGGATCAAAGTGCTT 58.661 39.130 0.00 0.00 37.84 3.91
5316 11518 3.960571 AGCAAGTATGGATCAAAGTGCT 58.039 40.909 0.00 0.00 36.31 4.40
5317 11519 4.156556 TGAAGCAAGTATGGATCAAAGTGC 59.843 41.667 0.00 0.00 0.00 4.40
5318 11520 5.885230 TGAAGCAAGTATGGATCAAAGTG 57.115 39.130 0.00 0.00 0.00 3.16
5319 11521 6.240894 TCTTGAAGCAAGTATGGATCAAAGT 58.759 36.000 7.02 0.00 41.66 2.66
5320 11522 6.748333 TCTTGAAGCAAGTATGGATCAAAG 57.252 37.500 7.02 0.00 41.66 2.77
5321 11523 6.319658 GGATCTTGAAGCAAGTATGGATCAAA 59.680 38.462 7.02 0.00 41.66 2.69
5322 11524 5.824624 GGATCTTGAAGCAAGTATGGATCAA 59.175 40.000 7.02 0.00 41.66 2.57
5323 11525 5.131642 AGGATCTTGAAGCAAGTATGGATCA 59.868 40.000 7.02 0.00 41.66 2.92
5324 11526 5.619220 AGGATCTTGAAGCAAGTATGGATC 58.381 41.667 7.02 3.31 41.66 3.36
5326 11528 4.141620 GGAGGATCTTGAAGCAAGTATGGA 60.142 45.833 7.02 0.00 41.66 3.41
5330 11532 2.505819 GGGGAGGATCTTGAAGCAAGTA 59.494 50.000 7.02 0.00 41.66 2.24
5331 11533 1.283321 GGGGAGGATCTTGAAGCAAGT 59.717 52.381 7.02 0.00 41.66 3.16
5332 11534 1.283029 TGGGGAGGATCTTGAAGCAAG 59.717 52.381 0.84 0.84 42.25 4.01
5333 11535 1.283029 CTGGGGAGGATCTTGAAGCAA 59.717 52.381 0.00 0.00 33.73 3.91
5334 11536 0.914644 CTGGGGAGGATCTTGAAGCA 59.085 55.000 0.00 0.00 33.73 3.91
5337 11539 1.885049 CTCCTGGGGAGGATCTTGAA 58.115 55.000 5.73 0.00 45.43 2.69
5338 11540 3.642977 CTCCTGGGGAGGATCTTGA 57.357 57.895 5.73 0.00 45.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.