Multiple sequence alignment - TraesCS1A01G429000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G429000 chr1A 100.000 2705 0 0 1 2705 582641430 582644134 0.000000e+00 4996
1 TraesCS1A01G429000 chr1A 79.225 284 52 6 2071 2350 560236702 560236982 9.890000e-45 191
2 TraesCS1A01G429000 chr1D 90.414 1763 106 19 990 2705 485420650 485422396 0.000000e+00 2261
3 TraesCS1A01G429000 chr1D 91.102 472 20 11 495 965 485420217 485420667 1.060000e-173 619
4 TraesCS1A01G429000 chr1D 82.031 256 42 4 2074 2326 467739934 467739680 5.870000e-52 215
5 TraesCS1A01G429000 chr1B 94.832 774 23 8 990 1756 675726415 675727178 0.000000e+00 1192
6 TraesCS1A01G429000 chr1B 86.506 956 75 27 21 965 675725520 675726432 0.000000e+00 1002
7 TraesCS1A01G429000 chr1B 82.437 985 107 28 1747 2705 675727242 675728186 0.000000e+00 800
8 TraesCS1A01G429000 chr5D 83.721 301 45 4 2076 2375 565507232 565507529 5.700000e-72 281
9 TraesCS1A01G429000 chr5D 82.581 155 25 2 131 285 297750927 297751079 4.700000e-28 135
10 TraesCS1A01G429000 chr3A 82.353 306 47 7 2071 2373 651652028 651652329 2.670000e-65 259
11 TraesCS1A01G429000 chr3D 81.695 295 51 3 2071 2363 516674531 516674824 2.690000e-60 243
12 TraesCS1A01G429000 chr3B 81.395 258 44 4 2071 2326 564748656 564748911 9.820000e-50 207
13 TraesCS1A01G429000 chr3B 75.987 304 52 15 134 423 13868307 13868011 1.310000e-28 137
14 TraesCS1A01G429000 chr7D 80.074 271 50 3 2085 2353 178706107 178706375 5.910000e-47 198
15 TraesCS1A01G429000 chr5A 77.740 292 48 10 149 428 455535509 455535223 2.150000e-36 163
16 TraesCS1A01G429000 chr5B 77.431 288 47 12 149 422 528129747 528129464 3.610000e-34 156
17 TraesCS1A01G429000 chr6D 79.621 211 31 8 148 348 62724822 62724614 1.010000e-29 141
18 TraesCS1A01G429000 chr6D 77.165 254 44 8 131 372 391921698 391921949 4.700000e-28 135
19 TraesCS1A01G429000 chr6D 85.827 127 14 3 132 258 201573943 201574065 6.080000e-27 132
20 TraesCS1A01G429000 chr6A 75.329 304 57 14 148 437 80089557 80089258 2.190000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G429000 chr1A 582641430 582644134 2704 False 4996 4996 100.000 1 2705 1 chr1A.!!$F2 2704
1 TraesCS1A01G429000 chr1D 485420217 485422396 2179 False 1440 2261 90.758 495 2705 2 chr1D.!!$F1 2210
2 TraesCS1A01G429000 chr1B 675725520 675728186 2666 False 998 1192 87.925 21 2705 3 chr1B.!!$F1 2684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 387 0.037326 ACATCAACTGTCGCCGATGT 60.037 50.0 0.0 0.0 42.71 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2017 0.036671 AGAAACCGACGATCCAACCC 60.037 55.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.250494 AAAAAGGAGGACAGCCCCA 58.750 52.632 0.00 0.00 34.66 4.96
24 25 0.786435 AAAAAGGAGGACAGCCCCAT 59.214 50.000 0.00 0.00 34.66 4.00
25 26 0.332972 AAAAGGAGGACAGCCCCATC 59.667 55.000 0.00 0.00 34.66 3.51
36 37 3.154473 CCCCATCTTCGGCGAGGA 61.154 66.667 24.01 24.01 0.00 3.71
49 50 0.108585 GCGAGGATGGAATGGGCTAA 59.891 55.000 0.00 0.00 0.00 3.09
64 65 6.855763 ATGGGCTAATTTGTGAGAATTCAA 57.144 33.333 8.44 0.00 34.49 2.69
68 69 6.151817 GGGCTAATTTGTGAGAATTCAAGTCT 59.848 38.462 8.44 0.00 34.49 3.24
70 71 8.178313 GGCTAATTTGTGAGAATTCAAGTCTAC 58.822 37.037 8.44 0.00 34.49 2.59
112 116 9.528018 CTCCTAACAAATGTGTGTTTACAAAAT 57.472 29.630 0.00 0.00 41.84 1.82
117 121 9.818796 AACAAATGTGTGTTTACAAAATTGAAC 57.181 25.926 5.63 0.00 38.60 3.18
121 125 5.061064 TGTGTGTTTACAAAATTGAACACGC 59.939 36.000 23.54 23.54 38.82 5.34
179 183 8.476447 TCTGATCTATTCATCATCTATCAAGGC 58.524 37.037 0.00 0.00 32.21 4.35
191 195 6.818644 TCATCTATCAAGGCAGTACAAAGAAC 59.181 38.462 0.00 0.00 0.00 3.01
194 198 1.873591 CAAGGCAGTACAAAGAACGCT 59.126 47.619 0.00 0.00 0.00 5.07
195 199 2.256117 AGGCAGTACAAAGAACGCTT 57.744 45.000 0.00 0.00 35.37 4.68
231 235 7.959658 AAATCACATCCAAATTCATAGACCA 57.040 32.000 0.00 0.00 0.00 4.02
240 244 4.323553 AATTCATAGACCACCTAGCGAC 57.676 45.455 0.00 0.00 0.00 5.19
241 245 1.306148 TCATAGACCACCTAGCGACG 58.694 55.000 0.00 0.00 0.00 5.12
242 246 1.134310 TCATAGACCACCTAGCGACGA 60.134 52.381 0.00 0.00 0.00 4.20
243 247 1.002684 CATAGACCACCTAGCGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
246 250 1.089920 GACCACCTAGCGACGACTAA 58.910 55.000 0.00 0.00 0.00 2.24
258 262 2.159960 CGACGACTAAAAGCACTGAAGC 60.160 50.000 0.00 0.00 0.00 3.86
260 264 1.792949 CGACTAAAAGCACTGAAGCGT 59.207 47.619 0.00 0.00 40.15 5.07
261 265 2.221055 CGACTAAAAGCACTGAAGCGTT 59.779 45.455 0.00 0.00 40.15 4.84
268 272 0.944311 GCACTGAAGCGTTCCGAAGA 60.944 55.000 0.00 0.00 0.00 2.87
269 273 1.714794 CACTGAAGCGTTCCGAAGAT 58.285 50.000 0.00 0.00 0.00 2.40
275 279 3.564027 CGTTCCGAAGATGCGCCC 61.564 66.667 4.18 0.00 0.00 6.13
276 280 3.202706 GTTCCGAAGATGCGCCCC 61.203 66.667 4.18 0.00 0.00 5.80
316 320 7.042254 AGTCGGAGAAACATTGTTGTAGTAAAC 60.042 37.037 2.13 0.00 39.69 2.01
335 339 8.825667 AGTAAACAATTGAAAAGTTGTTGTGT 57.174 26.923 13.59 0.00 45.05 3.72
344 348 4.649088 AAAGTTGTTGTGTTAAGGCCTC 57.351 40.909 5.23 0.00 0.00 4.70
356 360 2.423446 GGCCTCATAGGACCAGCG 59.577 66.667 0.00 0.00 37.46 5.18
357 361 2.435693 GGCCTCATAGGACCAGCGT 61.436 63.158 0.00 0.00 37.46 5.07
372 376 2.596452 CAGCGTACGAGAACATCAACT 58.404 47.619 21.65 0.00 0.00 3.16
377 381 1.419374 ACGAGAACATCAACTGTCGC 58.581 50.000 0.00 0.00 36.98 5.19
378 382 0.716108 CGAGAACATCAACTGTCGCC 59.284 55.000 0.00 0.00 36.98 5.54
383 387 0.037326 ACATCAACTGTCGCCGATGT 60.037 50.000 0.00 0.00 42.71 3.06
384 388 1.078709 CATCAACTGTCGCCGATGTT 58.921 50.000 0.00 0.00 32.41 2.71
396 401 2.545526 CGCCGATGTTAGAATTGCTGAT 59.454 45.455 0.00 0.00 0.00 2.90
398 403 3.561310 GCCGATGTTAGAATTGCTGATCA 59.439 43.478 0.00 0.00 0.00 2.92
402 407 5.680229 CGATGTTAGAATTGCTGATCAAAGC 59.320 40.000 0.00 0.00 43.82 3.51
423 428 3.584834 CGATCCAACATGTAGACACACA 58.415 45.455 0.00 0.00 37.54 3.72
427 432 2.731451 CCAACATGTAGACACACAGACG 59.269 50.000 0.00 0.00 37.54 4.18
440 445 0.179121 ACAGACGCACACAAACGAGA 60.179 50.000 0.00 0.00 0.00 4.04
461 466 1.590147 GGGTGACGGGTCTACACTG 59.410 63.158 0.00 0.00 35.28 3.66
465 470 0.111832 TGACGGGTCTACACTGAGGT 59.888 55.000 0.00 0.00 0.00 3.85
471 476 3.244112 CGGGTCTACACTGAGGTTCTTTT 60.244 47.826 0.00 0.00 0.00 2.27
477 482 2.509964 ACACTGAGGTTCTTTTGACCCT 59.490 45.455 0.00 0.00 44.58 4.34
479 484 3.316308 CACTGAGGTTCTTTTGACCCTTG 59.684 47.826 0.00 0.00 41.76 3.61
530 535 2.549754 CTCTTAATAACATGCTGCCCCG 59.450 50.000 0.00 0.00 0.00 5.73
535 540 0.969917 TAACATGCTGCCCCGCAAAT 60.970 50.000 0.00 0.00 44.06 2.32
550 555 4.096231 CCCGCAAATATCAGTGAAACATCA 59.904 41.667 0.00 0.00 41.43 3.07
555 560 6.183360 GCAAATATCAGTGAAACATCAGAGCT 60.183 38.462 0.00 0.00 41.43 4.09
556 561 7.627939 GCAAATATCAGTGAAACATCAGAGCTT 60.628 37.037 0.00 0.00 41.43 3.74
561 566 7.750229 TCAGTGAAACATCAGAGCTTAAAAT 57.250 32.000 0.00 0.00 41.43 1.82
571 576 9.635520 ACATCAGAGCTTAAAATTTTCATCTTG 57.364 29.630 6.72 5.93 0.00 3.02
627 632 8.667463 CCCATTTTCACATGACCATTATTTTTC 58.333 33.333 0.00 0.00 0.00 2.29
677 683 3.201290 CGAGGATCTTGACCATTTGGAG 58.799 50.000 3.01 0.00 38.94 3.86
678 684 3.369892 CGAGGATCTTGACCATTTGGAGT 60.370 47.826 3.01 0.00 38.94 3.85
680 686 3.019564 GGATCTTGACCATTTGGAGTGG 58.980 50.000 3.01 0.00 42.55 4.00
797 804 3.620821 GCTCTAGCTTTCCTTCACATGAC 59.379 47.826 0.00 0.00 38.21 3.06
798 805 4.825422 CTCTAGCTTTCCTTCACATGACA 58.175 43.478 0.00 0.00 0.00 3.58
799 806 5.426504 CTCTAGCTTTCCTTCACATGACAT 58.573 41.667 0.00 0.00 0.00 3.06
800 807 5.181009 TCTAGCTTTCCTTCACATGACATG 58.819 41.667 14.02 14.02 0.00 3.21
801 808 4.025040 AGCTTTCCTTCACATGACATGA 57.975 40.909 22.19 0.00 0.00 3.07
947 960 1.682684 GACTGCTTCCTCTCCCCGA 60.683 63.158 0.00 0.00 0.00 5.14
948 961 1.002274 ACTGCTTCCTCTCCCCGAT 59.998 57.895 0.00 0.00 0.00 4.18
949 962 1.045911 ACTGCTTCCTCTCCCCGATC 61.046 60.000 0.00 0.00 0.00 3.69
950 963 1.001631 TGCTTCCTCTCCCCGATCA 59.998 57.895 0.00 0.00 0.00 2.92
951 964 1.330655 TGCTTCCTCTCCCCGATCAC 61.331 60.000 0.00 0.00 0.00 3.06
952 965 1.330655 GCTTCCTCTCCCCGATCACA 61.331 60.000 0.00 0.00 0.00 3.58
953 966 1.418334 CTTCCTCTCCCCGATCACAT 58.582 55.000 0.00 0.00 0.00 3.21
954 967 1.342819 CTTCCTCTCCCCGATCACATC 59.657 57.143 0.00 0.00 0.00 3.06
955 968 0.558220 TCCTCTCCCCGATCACATCT 59.442 55.000 0.00 0.00 0.00 2.90
956 969 0.965439 CCTCTCCCCGATCACATCTC 59.035 60.000 0.00 0.00 0.00 2.75
957 970 0.965439 CTCTCCCCGATCACATCTCC 59.035 60.000 0.00 0.00 0.00 3.71
958 971 0.261696 TCTCCCCGATCACATCTCCA 59.738 55.000 0.00 0.00 0.00 3.86
959 972 0.678395 CTCCCCGATCACATCTCCAG 59.322 60.000 0.00 0.00 0.00 3.86
960 973 0.261696 TCCCCGATCACATCTCCAGA 59.738 55.000 0.00 0.00 0.00 3.86
961 974 0.390860 CCCCGATCACATCTCCAGAC 59.609 60.000 0.00 0.00 0.00 3.51
962 975 0.390860 CCCGATCACATCTCCAGACC 59.609 60.000 0.00 0.00 0.00 3.85
963 976 1.114627 CCGATCACATCTCCAGACCA 58.885 55.000 0.00 0.00 0.00 4.02
964 977 1.202463 CCGATCACATCTCCAGACCAC 60.202 57.143 0.00 0.00 0.00 4.16
965 978 1.478105 CGATCACATCTCCAGACCACA 59.522 52.381 0.00 0.00 0.00 4.17
966 979 2.102084 CGATCACATCTCCAGACCACAT 59.898 50.000 0.00 0.00 0.00 3.21
967 980 3.431346 CGATCACATCTCCAGACCACATT 60.431 47.826 0.00 0.00 0.00 2.71
968 981 4.521146 GATCACATCTCCAGACCACATTT 58.479 43.478 0.00 0.00 0.00 2.32
969 982 3.942829 TCACATCTCCAGACCACATTTC 58.057 45.455 0.00 0.00 0.00 2.17
970 983 3.012518 CACATCTCCAGACCACATTTCC 58.987 50.000 0.00 0.00 0.00 3.13
971 984 2.025887 ACATCTCCAGACCACATTTCCC 60.026 50.000 0.00 0.00 0.00 3.97
972 985 0.613260 TCTCCAGACCACATTTCCCG 59.387 55.000 0.00 0.00 0.00 5.14
973 986 0.392998 CTCCAGACCACATTTCCCGG 60.393 60.000 0.00 0.00 0.00 5.73
974 987 2.046285 CCAGACCACATTTCCCGGC 61.046 63.158 0.00 0.00 0.00 6.13
975 988 2.046285 CAGACCACATTTCCCGGCC 61.046 63.158 0.00 0.00 0.00 6.13
976 989 2.231380 AGACCACATTTCCCGGCCT 61.231 57.895 0.00 0.00 0.00 5.19
977 990 1.304134 GACCACATTTCCCGGCCTT 60.304 57.895 0.00 0.00 0.00 4.35
978 991 1.595093 GACCACATTTCCCGGCCTTG 61.595 60.000 0.00 0.00 0.00 3.61
979 992 2.573340 CACATTTCCCGGCCTTGC 59.427 61.111 0.00 0.00 0.00 4.01
980 993 2.679996 ACATTTCCCGGCCTTGCC 60.680 61.111 0.00 0.00 46.75 4.52
1299 1315 4.162690 GCGGACGGCAAGGGAGAT 62.163 66.667 0.00 0.00 42.87 2.75
1306 1322 2.268920 GCAAGGGAGATGTCGCCA 59.731 61.111 3.06 0.00 37.57 5.69
1528 1544 4.361253 CCACCGAGGTGTGAAGTG 57.639 61.111 19.62 1.03 44.02 3.16
1530 1546 0.880278 CCACCGAGGTGTGAAGTGTG 60.880 60.000 19.62 0.00 44.02 3.82
1531 1547 0.104120 CACCGAGGTGTGAAGTGTGA 59.896 55.000 13.82 0.00 40.91 3.58
1532 1548 1.048601 ACCGAGGTGTGAAGTGTGAT 58.951 50.000 0.00 0.00 0.00 3.06
1533 1549 1.000955 ACCGAGGTGTGAAGTGTGATC 59.999 52.381 0.00 0.00 0.00 2.92
1535 1551 1.068541 CGAGGTGTGAAGTGTGATCGA 60.069 52.381 0.00 0.00 0.00 3.59
1536 1552 2.416027 CGAGGTGTGAAGTGTGATCGAT 60.416 50.000 0.00 0.00 0.00 3.59
1537 1553 2.926200 GAGGTGTGAAGTGTGATCGATG 59.074 50.000 0.54 0.00 0.00 3.84
1538 1554 2.002586 GGTGTGAAGTGTGATCGATGG 58.997 52.381 0.54 0.00 0.00 3.51
1539 1555 2.353704 GGTGTGAAGTGTGATCGATGGA 60.354 50.000 0.54 0.00 0.00 3.41
1540 1556 2.668457 GTGTGAAGTGTGATCGATGGAC 59.332 50.000 0.54 0.00 0.00 4.02
1566 1582 2.879070 GCATGCCGTCGATCTGCTG 61.879 63.158 6.36 0.00 0.00 4.41
1580 1599 4.506758 GATCTGCTGCTTCTTCTTCTTCT 58.493 43.478 0.00 0.00 0.00 2.85
1581 1600 4.348863 TCTGCTGCTTCTTCTTCTTCTT 57.651 40.909 0.00 0.00 0.00 2.52
1582 1601 4.314121 TCTGCTGCTTCTTCTTCTTCTTC 58.686 43.478 0.00 0.00 0.00 2.87
1602 1621 1.344226 CGTCGTTCGATTGCTGCTCA 61.344 55.000 0.00 0.00 42.86 4.26
1609 1628 3.984193 GATTGCTGCTCAGGCCCGT 62.984 63.158 0.00 0.00 37.74 5.28
1771 1872 0.589223 TGTTGACGCGATTGTTTCCC 59.411 50.000 15.93 0.00 0.00 3.97
1772 1873 0.109919 GTTGACGCGATTGTTTCCCC 60.110 55.000 15.93 0.00 0.00 4.81
1819 1926 2.124122 GCGTGCGATTTGTTCCTTTTT 58.876 42.857 0.00 0.00 0.00 1.94
1846 1955 5.062934 TCTGTTTGTTTGAGTAGAACACACG 59.937 40.000 0.00 0.00 39.38 4.49
1890 1999 7.416154 TCTACTCGTGTAAAAATCTTGTTGG 57.584 36.000 0.00 0.00 0.00 3.77
1893 2002 2.977169 CGTGTAAAAATCTTGTTGGGCG 59.023 45.455 0.00 0.00 0.00 6.13
1906 2015 0.461961 TTGGGCGGTTCTTTTGTTGG 59.538 50.000 0.00 0.00 0.00 3.77
1908 2017 0.249280 GGGCGGTTCTTTTGTTGGTG 60.249 55.000 0.00 0.00 0.00 4.17
1918 2027 1.323412 TTTGTTGGTGGGTTGGATCG 58.677 50.000 0.00 0.00 0.00 3.69
1921 2030 1.004320 TTGGTGGGTTGGATCGTCG 60.004 57.895 0.00 0.00 0.00 5.12
1926 2035 0.320946 TGGGTTGGATCGTCGGTTTC 60.321 55.000 0.00 0.00 0.00 2.78
1928 2037 1.356938 GGTTGGATCGTCGGTTTCTC 58.643 55.000 0.00 0.00 0.00 2.87
1933 2042 1.065851 GGATCGTCGGTTTCTCTCTCC 59.934 57.143 0.00 0.00 0.00 3.71
1937 2046 0.597072 GTCGGTTTCTCTCTCCGTGT 59.403 55.000 0.00 0.00 43.94 4.49
1938 2047 0.879765 TCGGTTTCTCTCTCCGTGTC 59.120 55.000 0.00 0.00 43.94 3.67
1951 2060 0.677731 CCGTGTCATGGGTGATGCTT 60.678 55.000 2.78 0.00 36.60 3.91
1956 2065 1.895131 GTCATGGGTGATGCTTTTGGT 59.105 47.619 0.00 0.00 36.60 3.67
2012 2121 8.637099 TCAACTTCAACCAACAATAAATGATGA 58.363 29.630 0.00 0.00 33.90 2.92
2055 2164 1.930503 CAAGAACACAGTACACGCACA 59.069 47.619 0.00 0.00 0.00 4.57
2057 2166 1.407618 AGAACACAGTACACGCACAGA 59.592 47.619 0.00 0.00 0.00 3.41
2069 2178 3.243068 ACACGCACAGAAAGGCTAAAAAG 60.243 43.478 0.00 0.00 0.00 2.27
2099 2210 1.922447 ACACTGCCCCTTGGATGATAA 59.078 47.619 0.00 0.00 0.00 1.75
2123 2234 6.471233 ACCATCGATGATTGAGAGACTTTA 57.529 37.500 26.86 0.00 0.00 1.85
2166 2277 1.040893 TCGGATTAGGGCTCGAAGCA 61.041 55.000 0.00 0.00 44.75 3.91
2193 2304 4.520492 GTGTTCATGGAACCAAGAGTGAAT 59.480 41.667 9.72 0.00 41.35 2.57
2194 2305 4.520111 TGTTCATGGAACCAAGAGTGAATG 59.480 41.667 9.72 0.00 41.35 2.67
2195 2306 4.371624 TCATGGAACCAAGAGTGAATGT 57.628 40.909 0.00 0.00 0.00 2.71
2203 2317 3.012518 CCAAGAGTGAATGTTGGCCTAG 58.987 50.000 3.32 0.00 44.62 3.02
2225 2339 2.356665 TGTTGTGCCCTTTTGCTCTA 57.643 45.000 0.00 0.00 0.00 2.43
2231 2345 2.162408 GTGCCCTTTTGCTCTATGTCAC 59.838 50.000 0.00 0.00 0.00 3.67
2237 2351 3.885724 TTTGCTCTATGTCACGGATCA 57.114 42.857 0.00 0.00 0.00 2.92
2273 2390 1.340568 CCAACCATGCATCACACAACA 59.659 47.619 0.00 0.00 0.00 3.33
2274 2391 2.223994 CCAACCATGCATCACACAACAA 60.224 45.455 0.00 0.00 0.00 2.83
2275 2392 2.796031 CAACCATGCATCACACAACAAC 59.204 45.455 0.00 0.00 0.00 3.32
2283 2400 2.684001 TCACACAACAACTCGTCCTT 57.316 45.000 0.00 0.00 0.00 3.36
2342 2459 8.542953 TCTTCAGATCGATAACAAATTCATTCG 58.457 33.333 0.00 0.00 0.00 3.34
2358 2475 1.663379 TTCGGATCATCGTCGCCACT 61.663 55.000 0.00 0.00 0.00 4.00
2375 2492 2.364842 TGCTCTCCTCCTGCTCCC 60.365 66.667 0.00 0.00 0.00 4.30
2442 2587 2.198827 CCTGCTGGGTGTATTTGTCA 57.801 50.000 0.71 0.00 0.00 3.58
2460 2605 0.386858 CAGACTGGGTGTACGTGTCG 60.387 60.000 0.00 0.00 33.40 4.35
2461 2606 1.080974 GACTGGGTGTACGTGTCGG 60.081 63.158 0.00 0.00 0.00 4.79
2462 2607 2.431942 CTGGGTGTACGTGTCGGC 60.432 66.667 0.00 0.00 0.00 5.54
2463 2608 2.913578 TGGGTGTACGTGTCGGCT 60.914 61.111 0.00 0.00 0.00 5.52
2464 2609 2.341176 GGGTGTACGTGTCGGCTT 59.659 61.111 0.00 0.00 0.00 4.35
2506 2656 1.340405 CCTGCCTGTCCTTGTAGCAAT 60.340 52.381 0.00 0.00 32.14 3.56
2517 2667 3.388308 CTTGTAGCAATCTCATCCTCCG 58.612 50.000 0.00 0.00 0.00 4.63
2522 2672 1.748591 GCAATCTCATCCTCCGCCTTT 60.749 52.381 0.00 0.00 0.00 3.11
2573 2725 2.202401 GTCGTCGTACACCCGCTC 60.202 66.667 0.00 0.00 0.00 5.03
2601 2753 1.191535 TAGGCATACCAGCGAACAGT 58.808 50.000 0.00 0.00 39.06 3.55
2605 2757 1.795768 CATACCAGCGAACAGTGTGT 58.204 50.000 0.00 0.00 0.00 3.72
2668 2820 1.608055 CTGTGGCAATGAACAGTCCA 58.392 50.000 7.95 0.00 39.17 4.02
2676 2828 4.202151 GGCAATGAACAGTCCAAGAAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
2680 2832 3.807622 TGAACAGTCCAAGAAAAGTAGCG 59.192 43.478 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.786435 ATGGGGCTGTCCTCCTTTTT 59.214 50.000 0.00 0.00 35.33 1.94
6 7 0.332972 GATGGGGCTGTCCTCCTTTT 59.667 55.000 0.00 0.00 35.33 2.27
7 8 0.551131 AGATGGGGCTGTCCTCCTTT 60.551 55.000 0.00 0.00 35.33 3.11
8 9 0.551131 AAGATGGGGCTGTCCTCCTT 60.551 55.000 0.00 0.00 35.33 3.36
9 10 0.985490 GAAGATGGGGCTGTCCTCCT 60.985 60.000 0.00 0.00 35.33 3.69
10 11 1.529309 GAAGATGGGGCTGTCCTCC 59.471 63.158 0.00 0.00 35.33 4.30
11 12 1.144936 CGAAGATGGGGCTGTCCTC 59.855 63.158 0.00 0.00 35.33 3.71
12 13 2.370445 CCGAAGATGGGGCTGTCCT 61.370 63.158 0.00 0.00 35.33 3.85
13 14 2.190578 CCGAAGATGGGGCTGTCC 59.809 66.667 0.00 0.00 0.00 4.02
14 15 2.514824 GCCGAAGATGGGGCTGTC 60.515 66.667 0.00 0.00 45.93 3.51
18 19 4.918201 CCTCGCCGAAGATGGGGC 62.918 72.222 0.00 0.00 45.95 5.80
19 20 2.511452 ATCCTCGCCGAAGATGGGG 61.511 63.158 0.00 0.00 42.99 4.96
20 21 1.301244 CATCCTCGCCGAAGATGGG 60.301 63.158 16.16 0.43 34.94 4.00
21 22 4.350620 CATCCTCGCCGAAGATGG 57.649 61.111 16.16 0.81 34.94 3.51
22 23 0.104855 TTCCATCCTCGCCGAAGATG 59.895 55.000 16.84 16.84 37.69 2.90
23 24 1.051812 ATTCCATCCTCGCCGAAGAT 58.948 50.000 0.00 0.00 0.00 2.40
24 25 0.104855 CATTCCATCCTCGCCGAAGA 59.895 55.000 0.00 0.00 0.00 2.87
25 26 0.882042 CCATTCCATCCTCGCCGAAG 60.882 60.000 0.00 0.00 0.00 3.79
32 33 4.038402 CACAAATTAGCCCATTCCATCCTC 59.962 45.833 0.00 0.00 0.00 3.71
36 37 4.870636 TCTCACAAATTAGCCCATTCCAT 58.129 39.130 0.00 0.00 0.00 3.41
49 50 8.517878 CCAATGTAGACTTGAATTCTCACAAAT 58.482 33.333 7.05 0.00 0.00 2.32
155 159 8.142485 TGCCTTGATAGATGATGAATAGATCA 57.858 34.615 0.00 0.00 43.67 2.92
178 182 3.002348 ACTTCAAGCGTTCTTTGTACTGC 59.998 43.478 0.00 0.00 0.00 4.40
179 183 4.795970 ACTTCAAGCGTTCTTTGTACTG 57.204 40.909 0.00 0.00 0.00 2.74
191 195 7.481798 GGATGTGATTTTTAGTTACTTCAAGCG 59.518 37.037 0.00 0.00 0.00 4.68
231 235 1.542915 TGCTTTTAGTCGTCGCTAGGT 59.457 47.619 0.00 0.00 0.00 3.08
240 244 1.792949 ACGCTTCAGTGCTTTTAGTCG 59.207 47.619 0.00 0.00 0.00 4.18
241 245 3.364068 GGAACGCTTCAGTGCTTTTAGTC 60.364 47.826 0.00 0.00 0.00 2.59
242 246 2.548480 GGAACGCTTCAGTGCTTTTAGT 59.452 45.455 0.00 0.00 0.00 2.24
243 247 3.188895 GGAACGCTTCAGTGCTTTTAG 57.811 47.619 0.00 0.00 0.00 1.85
260 264 4.483243 GGGGGCGCATCTTCGGAA 62.483 66.667 10.83 0.00 0.00 4.30
278 282 4.933064 CCGACTCCGCTCGATGGC 62.933 72.222 0.00 0.00 35.58 4.40
292 296 6.762187 TGTTTACTACAACAATGTTTCTCCGA 59.238 34.615 0.00 0.00 41.05 4.55
316 320 7.179410 GCCTTAACACAACAACTTTTCAATTG 58.821 34.615 0.00 0.00 0.00 2.32
331 335 2.504175 GGTCCTATGAGGCCTTAACACA 59.496 50.000 6.77 0.00 34.61 3.72
334 338 2.485657 GCTGGTCCTATGAGGCCTTAAC 60.486 54.545 6.77 0.00 34.61 2.01
335 339 1.768870 GCTGGTCCTATGAGGCCTTAA 59.231 52.381 6.77 0.00 34.61 1.85
344 348 1.306148 TCTCGTACGCTGGTCCTATG 58.694 55.000 11.24 0.00 0.00 2.23
356 360 2.341760 GCGACAGTTGATGTTCTCGTAC 59.658 50.000 0.00 0.00 44.17 3.67
357 361 2.592194 GCGACAGTTGATGTTCTCGTA 58.408 47.619 0.00 0.00 44.17 3.43
372 376 1.663643 GCAATTCTAACATCGGCGACA 59.336 47.619 13.76 0.00 0.00 4.35
377 381 5.739752 TTGATCAGCAATTCTAACATCGG 57.260 39.130 0.00 0.00 0.00 4.18
378 382 5.680229 GCTTTGATCAGCAATTCTAACATCG 59.320 40.000 2.23 0.00 39.83 3.84
396 401 3.932710 GTCTACATGTTGGATCGCTTTGA 59.067 43.478 2.30 0.00 0.00 2.69
398 403 3.684788 GTGTCTACATGTTGGATCGCTTT 59.315 43.478 2.30 0.00 0.00 3.51
402 407 3.584834 TGTGTGTCTACATGTTGGATCG 58.415 45.455 2.30 0.00 39.39 3.69
411 416 1.339929 TGTGCGTCTGTGTGTCTACAT 59.660 47.619 0.00 0.00 39.39 2.29
423 428 0.928229 GTTCTCGTTTGTGTGCGTCT 59.072 50.000 0.00 0.00 0.00 4.18
427 432 1.278637 CCCGTTCTCGTTTGTGTGC 59.721 57.895 0.00 0.00 35.01 4.57
440 445 1.531365 TGTAGACCCGTCACCCGTT 60.531 57.895 0.00 0.00 33.66 4.44
450 455 4.065789 CAAAAGAACCTCAGTGTAGACCC 58.934 47.826 0.00 0.00 0.00 4.46
451 456 4.750598 GTCAAAAGAACCTCAGTGTAGACC 59.249 45.833 0.00 0.00 0.00 3.85
453 458 4.202326 GGGTCAAAAGAACCTCAGTGTAGA 60.202 45.833 0.00 0.00 36.97 2.59
461 466 3.815962 GAGACAAGGGTCAAAAGAACCTC 59.184 47.826 2.02 0.00 42.45 3.85
465 470 4.503714 AGTGAGACAAGGGTCAAAAGAA 57.496 40.909 0.00 0.00 46.80 2.52
471 476 1.616865 CCGTTAGTGAGACAAGGGTCA 59.383 52.381 0.00 0.00 46.80 4.02
477 482 3.746045 AGAAAGCCGTTAGTGAGACAA 57.254 42.857 0.00 0.00 0.00 3.18
479 484 5.205565 CAAAAAGAAAGCCGTTAGTGAGAC 58.794 41.667 0.00 0.00 0.00 3.36
530 535 5.970023 GCTCTGATGTTTCACTGATATTTGC 59.030 40.000 0.00 0.00 0.00 3.68
535 540 8.846943 TTTTAAGCTCTGATGTTTCACTGATA 57.153 30.769 0.00 0.00 0.00 2.15
550 555 8.302438 CACCTCAAGATGAAAATTTTAAGCTCT 58.698 33.333 6.51 3.07 0.00 4.09
555 560 8.359642 CACTCCACCTCAAGATGAAAATTTTAA 58.640 33.333 2.75 0.00 0.00 1.52
556 561 7.039784 CCACTCCACCTCAAGATGAAAATTTTA 60.040 37.037 2.75 0.00 0.00 1.52
561 566 3.754965 CCACTCCACCTCAAGATGAAAA 58.245 45.455 0.00 0.00 0.00 2.29
570 575 1.347707 CAGTTTAGCCACTCCACCTCA 59.652 52.381 0.00 0.00 0.00 3.86
571 576 1.339151 CCAGTTTAGCCACTCCACCTC 60.339 57.143 0.00 0.00 0.00 3.85
627 632 6.324819 TCTCAGCAAAAGTTCTTTGTTTCTG 58.675 36.000 0.00 4.91 0.00 3.02
644 650 2.392662 AGATCCTCGGAATTCTCAGCA 58.607 47.619 5.23 0.00 0.00 4.41
645 651 3.129871 CAAGATCCTCGGAATTCTCAGC 58.870 50.000 5.23 0.00 0.00 4.26
646 652 4.367450 GTCAAGATCCTCGGAATTCTCAG 58.633 47.826 5.23 1.54 0.00 3.35
709 716 2.406002 TTTGACTGAACCTCCGGCCC 62.406 60.000 0.00 0.00 0.00 5.80
721 728 2.414481 CACGCTCTTCCATCTTTGACTG 59.586 50.000 0.00 0.00 0.00 3.51
754 761 2.812178 CGGCTTTGGCTTGCATGC 60.812 61.111 15.87 15.87 38.73 4.06
797 804 8.002107 CCAATACGTACGTAGCTTTTATTCATG 58.998 37.037 29.65 10.27 33.77 3.07
798 805 7.707893 ACCAATACGTACGTAGCTTTTATTCAT 59.292 33.333 29.65 9.81 33.77 2.57
799 806 7.035004 ACCAATACGTACGTAGCTTTTATTCA 58.965 34.615 29.65 7.84 33.77 2.57
800 807 7.455331 ACCAATACGTACGTAGCTTTTATTC 57.545 36.000 29.65 0.00 33.77 1.75
801 808 7.168135 GCTACCAATACGTACGTAGCTTTTATT 59.832 37.037 29.65 17.25 46.52 1.40
947 960 4.521146 GAAATGTGGTCTGGAGATGTGAT 58.479 43.478 0.00 0.00 0.00 3.06
948 961 3.307691 GGAAATGTGGTCTGGAGATGTGA 60.308 47.826 0.00 0.00 0.00 3.58
949 962 3.012518 GGAAATGTGGTCTGGAGATGTG 58.987 50.000 0.00 0.00 0.00 3.21
950 963 2.025887 GGGAAATGTGGTCTGGAGATGT 60.026 50.000 0.00 0.00 0.00 3.06
951 964 2.648059 GGGAAATGTGGTCTGGAGATG 58.352 52.381 0.00 0.00 0.00 2.90
952 965 1.210478 CGGGAAATGTGGTCTGGAGAT 59.790 52.381 0.00 0.00 0.00 2.75
953 966 0.613260 CGGGAAATGTGGTCTGGAGA 59.387 55.000 0.00 0.00 0.00 3.71
954 967 0.392998 CCGGGAAATGTGGTCTGGAG 60.393 60.000 0.00 0.00 0.00 3.86
955 968 1.682849 CCGGGAAATGTGGTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
956 969 2.046285 GCCGGGAAATGTGGTCTGG 61.046 63.158 2.18 0.00 0.00 3.86
957 970 2.046285 GGCCGGGAAATGTGGTCTG 61.046 63.158 2.18 0.00 0.00 3.51
958 971 1.789576 AAGGCCGGGAAATGTGGTCT 61.790 55.000 2.18 0.00 40.04 3.85
959 972 1.304134 AAGGCCGGGAAATGTGGTC 60.304 57.895 2.18 0.00 0.00 4.02
960 973 1.606313 CAAGGCCGGGAAATGTGGT 60.606 57.895 2.18 0.00 0.00 4.16
961 974 3.005540 GCAAGGCCGGGAAATGTGG 62.006 63.158 2.18 0.00 0.00 4.17
962 975 2.573340 GCAAGGCCGGGAAATGTG 59.427 61.111 2.18 0.00 0.00 3.21
963 976 2.679996 GGCAAGGCCGGGAAATGT 60.680 61.111 2.18 0.00 39.62 2.71
973 986 0.464373 TGATTGATCGGAGGCAAGGC 60.464 55.000 3.12 0.00 0.00 4.35
974 987 1.303309 GTGATTGATCGGAGGCAAGG 58.697 55.000 3.12 0.00 0.00 3.61
975 988 2.028420 TGTGATTGATCGGAGGCAAG 57.972 50.000 3.12 0.00 0.00 4.01
976 989 2.171237 AGATGTGATTGATCGGAGGCAA 59.829 45.455 0.00 0.00 0.00 4.52
977 990 1.764723 AGATGTGATTGATCGGAGGCA 59.235 47.619 0.00 0.00 0.00 4.75
978 991 2.411904 GAGATGTGATTGATCGGAGGC 58.588 52.381 0.00 0.00 0.00 4.70
979 992 2.366590 TGGAGATGTGATTGATCGGAGG 59.633 50.000 0.00 0.00 0.00 4.30
980 993 3.320256 TCTGGAGATGTGATTGATCGGAG 59.680 47.826 0.00 0.00 0.00 4.63
981 994 3.068732 GTCTGGAGATGTGATTGATCGGA 59.931 47.826 0.00 0.00 0.00 4.55
982 995 3.388308 GTCTGGAGATGTGATTGATCGG 58.612 50.000 0.00 0.00 0.00 4.18
983 996 3.181472 TGGTCTGGAGATGTGATTGATCG 60.181 47.826 0.00 0.00 0.00 3.69
984 997 4.125703 GTGGTCTGGAGATGTGATTGATC 58.874 47.826 0.00 0.00 0.00 2.92
985 998 3.118112 GGTGGTCTGGAGATGTGATTGAT 60.118 47.826 0.00 0.00 0.00 2.57
986 999 2.237143 GGTGGTCTGGAGATGTGATTGA 59.763 50.000 0.00 0.00 0.00 2.57
987 1000 2.636830 GGTGGTCTGGAGATGTGATTG 58.363 52.381 0.00 0.00 0.00 2.67
988 1001 1.208052 CGGTGGTCTGGAGATGTGATT 59.792 52.381 0.00 0.00 0.00 2.57
1525 1541 1.676678 CCCGGTCCATCGATCACACT 61.677 60.000 0.00 0.00 0.00 3.55
1526 1542 1.227263 CCCGGTCCATCGATCACAC 60.227 63.158 0.00 0.00 0.00 3.82
1527 1543 2.431454 CCCCGGTCCATCGATCACA 61.431 63.158 0.00 0.00 0.00 3.58
1528 1544 2.421739 CCCCGGTCCATCGATCAC 59.578 66.667 0.00 0.00 0.00 3.06
1530 1546 3.234730 AGCCCCGGTCCATCGATC 61.235 66.667 0.00 0.00 0.00 3.69
1531 1547 3.550431 CAGCCCCGGTCCATCGAT 61.550 66.667 0.00 0.00 0.00 3.59
1535 1551 4.511246 CATGCAGCCCCGGTCCAT 62.511 66.667 0.00 0.00 0.00 3.41
1566 1582 2.664085 CGACGGAAGAAGAAGAAGAAGC 59.336 50.000 0.00 0.00 0.00 3.86
1580 1599 1.623081 GCAGCAATCGAACGACGGAA 61.623 55.000 0.00 0.00 42.82 4.30
1581 1600 2.092291 GCAGCAATCGAACGACGGA 61.092 57.895 0.00 0.00 42.82 4.69
1582 1601 2.014093 GAGCAGCAATCGAACGACGG 62.014 60.000 0.00 0.00 42.82 4.79
1602 1621 0.393077 CTTATGATTCGGACGGGCCT 59.607 55.000 0.84 0.00 0.00 5.19
1609 1628 5.830457 ACACATCTCTCTCTTATGATTCGGA 59.170 40.000 0.00 0.00 0.00 4.55
1771 1872 4.686554 GCTTCTGGTACTCATTATAAGCGG 59.313 45.833 0.00 0.00 0.00 5.52
1772 1873 5.175856 GTGCTTCTGGTACTCATTATAAGCG 59.824 44.000 0.00 0.00 40.65 4.68
1819 1926 7.806014 GTGTGTTCTACTCAAACAAACAGAAAA 59.194 33.333 4.79 0.00 42.13 2.29
1825 1934 4.093850 ACCGTGTGTTCTACTCAAACAAAC 59.906 41.667 0.25 0.25 40.13 2.93
1833 1942 3.909430 TCATTCACCGTGTGTTCTACTC 58.091 45.455 0.00 0.00 34.79 2.59
1846 1955 4.499183 AGATCGAAGTTGTCTCATTCACC 58.501 43.478 0.00 0.00 0.00 4.02
1890 1999 0.249280 CCACCAACAAAAGAACCGCC 60.249 55.000 0.00 0.00 0.00 6.13
1893 2002 2.419436 CCAACCCACCAACAAAAGAACC 60.419 50.000 0.00 0.00 0.00 3.62
1906 2015 0.604511 AAACCGACGATCCAACCCAC 60.605 55.000 0.00 0.00 0.00 4.61
1908 2017 0.036671 AGAAACCGACGATCCAACCC 60.037 55.000 0.00 0.00 0.00 4.11
1921 2030 2.611518 CATGACACGGAGAGAGAAACC 58.388 52.381 0.00 0.00 0.00 3.27
1926 2035 0.174389 CACCCATGACACGGAGAGAG 59.826 60.000 0.00 0.00 0.00 3.20
1928 2037 0.826715 ATCACCCATGACACGGAGAG 59.173 55.000 0.00 0.00 37.79 3.20
1933 2042 1.167851 AAAGCATCACCCATGACACG 58.832 50.000 0.00 0.00 37.79 4.49
1937 2046 2.307496 ACCAAAAGCATCACCCATGA 57.693 45.000 0.00 0.00 39.83 3.07
1938 2047 4.081531 ACATTACCAAAAGCATCACCCATG 60.082 41.667 0.00 0.00 35.29 3.66
1977 2086 9.612066 ATTGTTGGTTGAAGTTGAATAAACAAT 57.388 25.926 17.40 17.40 41.61 2.71
1990 2099 9.642327 TTCATCATCATTTATTGTTGGTTGAAG 57.358 29.630 0.00 0.00 31.44 3.02
2004 2113 8.963725 TCAAGCATAAGAACTTCATCATCATTT 58.036 29.630 0.00 0.00 0.00 2.32
2005 2114 8.515695 TCAAGCATAAGAACTTCATCATCATT 57.484 30.769 0.00 0.00 0.00 2.57
2028 2137 4.565166 CGTGTACTGTGTTCTTGAAGTTCA 59.435 41.667 0.08 0.08 0.00 3.18
2029 2138 4.550255 GCGTGTACTGTGTTCTTGAAGTTC 60.550 45.833 0.00 0.00 0.00 3.01
2045 2154 2.074547 TAGCCTTTCTGTGCGTGTAC 57.925 50.000 0.00 0.00 0.00 2.90
2055 2164 7.148137 TGTCGAAGTTTTCTTTTTAGCCTTTCT 60.148 33.333 0.00 0.00 40.61 2.52
2057 2166 6.750501 GTGTCGAAGTTTTCTTTTTAGCCTTT 59.249 34.615 0.00 0.00 40.61 3.11
2069 2178 0.591659 GGGGCAGTGTCGAAGTTTTC 59.408 55.000 0.00 0.00 0.00 2.29
2099 2210 5.350504 AAGTCTCTCAATCATCGATGGTT 57.649 39.130 24.61 21.51 0.00 3.67
2166 2277 4.895297 ACTCTTGGTTCCATGAACACAAAT 59.105 37.500 9.01 0.00 43.54 2.32
2193 2304 1.885887 GCACAACATTCTAGGCCAACA 59.114 47.619 5.01 0.00 0.00 3.33
2194 2305 1.202348 GGCACAACATTCTAGGCCAAC 59.798 52.381 5.01 0.00 41.02 3.77
2195 2306 1.544724 GGCACAACATTCTAGGCCAA 58.455 50.000 5.01 0.00 41.02 4.52
2203 2317 2.036346 AGAGCAAAAGGGCACAACATTC 59.964 45.455 0.00 0.00 35.83 2.67
2225 2339 3.736720 CCATTGATCTGATCCGTGACAT 58.263 45.455 14.71 0.00 0.00 3.06
2231 2345 1.871676 CACTGCCATTGATCTGATCCG 59.128 52.381 14.71 3.90 0.00 4.18
2273 2390 2.559668 TCAACATACGGAAGGACGAGTT 59.440 45.455 0.00 0.00 37.61 3.01
2274 2391 2.165167 TCAACATACGGAAGGACGAGT 58.835 47.619 0.00 0.00 37.61 4.18
2275 2392 2.933495 TCAACATACGGAAGGACGAG 57.067 50.000 0.00 0.00 37.61 4.18
2283 2400 5.185249 AGAGTAGAAAGCTTCAACATACGGA 59.815 40.000 0.00 0.00 0.00 4.69
2340 2457 2.119029 AGTGGCGACGATGATCCGA 61.119 57.895 0.00 0.00 0.00 4.55
2342 2459 2.240500 GCAGTGGCGACGATGATCC 61.241 63.158 0.00 0.00 0.00 3.36
2358 2475 2.364842 GGGAGCAGGAGGAGAGCA 60.365 66.667 0.00 0.00 0.00 4.26
2437 2582 1.067974 CACGTACACCCAGTCTGACAA 59.932 52.381 10.88 0.00 0.00 3.18
2439 2584 0.672342 ACACGTACACCCAGTCTGAC 59.328 55.000 0.00 0.00 0.00 3.51
2442 2587 1.521450 CCGACACGTACACCCAGTCT 61.521 60.000 0.00 0.00 0.00 3.24
2506 2656 0.537188 GACAAAGGCGGAGGATGAGA 59.463 55.000 0.00 0.00 0.00 3.27
2517 2667 3.002791 TGAGATCATTCGTGACAAAGGC 58.997 45.455 0.00 0.00 0.00 4.35
2522 2672 5.482006 AGATGTTTGAGATCATTCGTGACA 58.518 37.500 0.00 0.00 0.00 3.58
2601 2753 1.003118 GAGTAGATGGTTGCCCACACA 59.997 52.381 0.00 0.00 45.65 3.72
2680 2832 0.785979 ATTAACGTCAACGCGACACC 59.214 50.000 15.93 0.00 45.70 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.