Multiple sequence alignment - TraesCS1A01G428400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G428400 chr1A 100.000 4868 0 0 1 4868 582275713 582280580 0.000000e+00 8990
1 TraesCS1A01G428400 chr1A 88.933 1518 96 28 2200 3711 582292258 582293709 0.000000e+00 1807
2 TraesCS1A01G428400 chr1A 81.842 1151 114 45 3398 4509 582412065 582413159 0.000000e+00 880
3 TraesCS1A01G428400 chr1A 84.054 740 77 14 2634 3365 582358357 582359063 0.000000e+00 675
4 TraesCS1A01G428400 chr1A 88.377 456 39 6 1 455 442126334 442126776 1.990000e-148 536
5 TraesCS1A01G428400 chr1A 85.523 449 38 11 3043 3479 582411350 582411783 1.240000e-120 444
6 TraesCS1A01G428400 chr1A 80.855 585 59 30 1875 2439 582357633 582358184 1.260000e-110 411
7 TraesCS1A01G428400 chr1A 92.933 283 11 5 3794 4071 582293715 582293993 2.110000e-108 403
8 TraesCS1A01G428400 chr1A 79.805 307 41 15 18 319 493283799 493283509 2.300000e-48 204
9 TraesCS1A01G428400 chr1B 92.895 3378 180 29 1517 4868 675374500 675377843 0.000000e+00 4854
10 TraesCS1A01G428400 chr1B 81.023 1017 55 44 587 1521 675373513 675374473 0.000000e+00 682
11 TraesCS1A01G428400 chr1B 85.747 442 37 12 3043 3473 675552473 675552899 1.240000e-120 444
12 TraesCS1A01G428400 chr1B 85.202 446 49 6 6 450 296672272 296672701 4.470000e-120 442
13 TraesCS1A01G428400 chr1B 79.710 621 67 26 2471 3056 675542590 675543186 1.270000e-105 394
14 TraesCS1A01G428400 chr1B 87.043 301 34 3 2967 3266 675543219 675543515 7.810000e-88 335
15 TraesCS1A01G428400 chr1B 81.140 456 38 22 3964 4384 675552946 675553388 6.080000e-84 322
16 TraesCS1A01G428400 chr1B 87.446 231 26 3 3254 3483 675543538 675543766 3.740000e-66 263
17 TraesCS1A01G428400 chr1B 87.097 186 18 4 3147 3332 675551891 675552070 6.390000e-49 206
18 TraesCS1A01G428400 chr1B 81.553 206 24 9 4301 4500 675543999 675544196 1.810000e-34 158
19 TraesCS1A01G428400 chr1D 90.281 2778 152 48 448 3165 485053186 485055905 0.000000e+00 3526
20 TraesCS1A01G428400 chr1D 85.505 1504 120 45 2922 4385 485099053 485100498 0.000000e+00 1480
21 TraesCS1A01G428400 chr1D 94.201 914 36 11 3253 4161 485055917 485056818 0.000000e+00 1378
22 TraesCS1A01G428400 chr1D 83.793 580 57 17 1882 2439 485089021 485089585 2.600000e-142 516
23 TraesCS1A01G428400 chr1D 84.598 435 51 9 2938 3365 485090173 485090598 7.540000e-113 418
24 TraesCS1A01G428400 chr1D 90.541 296 15 8 4524 4817 485057068 485057352 3.560000e-101 379
25 TraesCS1A01G428400 chr1D 91.078 269 19 4 4244 4509 485056814 485057080 4.630000e-95 359
26 TraesCS1A01G428400 chr1D 78.369 601 58 33 2471 3037 485089584 485090146 1.690000e-84 324
27 TraesCS1A01G428400 chr1D 89.404 151 16 0 313 463 40793890 40793740 1.790000e-44 191
28 TraesCS1A01G428400 chr1D 87.050 139 14 3 1005 1143 20519210 20519076 2.350000e-33 154
29 TraesCS1A01G428400 chr3A 90.393 458 40 4 1 456 33972171 33972626 2.510000e-167 599
30 TraesCS1A01G428400 chr2A 90.466 451 36 5 1 450 41467999 41468443 5.430000e-164 588
31 TraesCS1A01G428400 chr2A 89.254 456 44 5 1 455 611335999 611336450 2.540000e-157 566
32 TraesCS1A01G428400 chr5A 87.140 451 44 5 1 450 702476568 702476131 2.620000e-137 499
33 TraesCS1A01G428400 chr5A 90.960 177 16 0 1 177 655448658 655448482 6.300000e-59 239
34 TraesCS1A01G428400 chr5B 86.192 449 54 6 6 449 32029445 32029000 3.410000e-131 479
35 TraesCS1A01G428400 chrUn 85.969 449 54 7 6 449 351521700 351521256 5.700000e-129 472
36 TraesCS1A01G428400 chr2B 89.610 231 20 4 2967 3197 94929785 94929559 1.710000e-74 291
37 TraesCS1A01G428400 chr2B 88.095 84 8 2 4323 4404 94929487 94929404 1.120000e-16 99
38 TraesCS1A01G428400 chr4A 83.607 122 5 7 1372 1489 175692759 175692649 3.100000e-17 100
39 TraesCS1A01G428400 chr6B 92.308 52 4 0 1005 1056 360923110 360923059 1.880000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G428400 chr1A 582275713 582280580 4867 False 8990.000000 8990 100.000000 1 4868 1 chr1A.!!$F2 4867
1 TraesCS1A01G428400 chr1A 582292258 582293993 1735 False 1105.000000 1807 90.933000 2200 4071 2 chr1A.!!$F3 1871
2 TraesCS1A01G428400 chr1A 582411350 582413159 1809 False 662.000000 880 83.682500 3043 4509 2 chr1A.!!$F5 1466
3 TraesCS1A01G428400 chr1A 582357633 582359063 1430 False 543.000000 675 82.454500 1875 3365 2 chr1A.!!$F4 1490
4 TraesCS1A01G428400 chr1B 675373513 675377843 4330 False 2768.000000 4854 86.959000 587 4868 2 chr1B.!!$F2 4281
5 TraesCS1A01G428400 chr1B 675551891 675553388 1497 False 324.000000 444 84.661333 3043 4384 3 chr1B.!!$F4 1341
6 TraesCS1A01G428400 chr1B 675542590 675544196 1606 False 287.500000 394 83.938000 2471 4500 4 chr1B.!!$F3 2029
7 TraesCS1A01G428400 chr1D 485099053 485100498 1445 False 1480.000000 1480 85.505000 2922 4385 1 chr1D.!!$F1 1463
8 TraesCS1A01G428400 chr1D 485053186 485057352 4166 False 1410.500000 3526 91.525250 448 4817 4 chr1D.!!$F2 4369
9 TraesCS1A01G428400 chr1D 485089021 485090598 1577 False 419.333333 516 82.253333 1882 3365 3 chr1D.!!$F3 1483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.034337 TGCAACCGAGGTCCTGTTAC 59.966 55.000 0.00 0.00 0.00 2.50 F
209 210 0.034337 GCAACCGAGGTCCTGTTACA 59.966 55.000 0.00 0.00 0.00 2.41 F
493 494 0.095417 GCGCAAAGAAGCTAAGACCG 59.905 55.000 0.30 0.00 0.00 4.79 F
517 518 1.057822 CGCAACACATCTTCGAGCG 59.942 57.895 0.00 0.00 37.68 5.03 F
518 519 1.225854 GCAACACATCTTCGAGCGC 60.226 57.895 0.00 0.00 0.00 5.92 F
1513 1606 1.291132 GTTACCTGCTCTGCGATTCC 58.709 55.000 0.00 0.00 0.00 3.01 F
3139 3485 2.031437 GTGCTAGCTGTGCTAATTGCTC 59.969 50.000 17.23 4.26 40.82 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1769 1.148310 CACACGCATCGAGAACCTTT 58.852 50.000 0.00 0.00 0.00 3.11 R
2127 2254 4.789807 AGATATGCAGGAGAAACAATGCT 58.210 39.130 0.00 0.00 39.42 3.79 R
2181 2317 5.160641 TGCAACTTTTTAATCCTCAATCGC 58.839 37.500 0.00 0.00 0.00 4.58 R
2425 2585 5.702670 ACACGATAGATGATAATGCCAAAGG 59.297 40.000 0.00 0.00 41.38 3.11 R
2495 2662 6.959639 TGAGAATATTCAACCCTAATTGGC 57.040 37.500 17.56 0.00 0.00 4.52 R
3286 3671 2.811431 TGGTTATGCTCAAACAGGTTCG 59.189 45.455 0.00 0.00 0.00 3.95 R
4229 5008 0.664224 TATGATGCAAGCATGGCGTG 59.336 50.000 12.94 1.31 46.13 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.545823 TTTAAAAATATCTGCCGGCTCG 57.454 40.909 29.70 18.77 0.00 5.03
39 40 0.669077 CGGCAGCCGTTAGATCTAGT 59.331 55.000 26.69 0.00 42.73 2.57
41 42 1.409427 GGCAGCCGTTAGATCTAGTGT 59.591 52.381 0.00 0.00 0.00 3.55
42 43 2.544069 GGCAGCCGTTAGATCTAGTGTC 60.544 54.545 0.00 0.00 0.00 3.67
43 44 2.099263 GCAGCCGTTAGATCTAGTGTCA 59.901 50.000 2.02 0.00 0.00 3.58
44 45 3.428999 GCAGCCGTTAGATCTAGTGTCAA 60.429 47.826 2.02 0.00 0.00 3.18
46 47 3.130693 AGCCGTTAGATCTAGTGTCAACC 59.869 47.826 2.02 0.00 0.00 3.77
48 49 4.337555 GCCGTTAGATCTAGTGTCAACCTA 59.662 45.833 2.02 0.00 0.00 3.08
49 50 5.009811 GCCGTTAGATCTAGTGTCAACCTAT 59.990 44.000 2.02 0.00 0.00 2.57
50 51 6.439599 CCGTTAGATCTAGTGTCAACCTATG 58.560 44.000 2.02 0.00 0.00 2.23
51 52 6.262496 CCGTTAGATCTAGTGTCAACCTATGA 59.738 42.308 2.02 0.00 35.05 2.15
52 53 7.040340 CCGTTAGATCTAGTGTCAACCTATGAT 60.040 40.741 2.02 0.00 40.97 2.45
53 54 8.018520 CGTTAGATCTAGTGTCAACCTATGATC 58.981 40.741 2.02 0.00 40.97 2.92
54 55 6.909550 AGATCTAGTGTCAACCTATGATCC 57.090 41.667 0.00 0.00 40.97 3.36
55 56 6.377080 AGATCTAGTGTCAACCTATGATCCA 58.623 40.000 0.00 0.00 40.97 3.41
56 57 6.493115 AGATCTAGTGTCAACCTATGATCCAG 59.507 42.308 0.00 0.00 40.97 3.86
57 58 5.766590 TCTAGTGTCAACCTATGATCCAGA 58.233 41.667 0.00 0.00 40.97 3.86
58 59 4.744795 AGTGTCAACCTATGATCCAGAC 57.255 45.455 0.00 0.00 40.97 3.51
60 61 2.159099 TGTCAACCTATGATCCAGACGC 60.159 50.000 0.00 0.00 40.97 5.19
61 62 1.067060 TCAACCTATGATCCAGACGCG 59.933 52.381 3.53 3.53 31.50 6.01
62 63 1.112113 AACCTATGATCCAGACGCGT 58.888 50.000 13.85 13.85 0.00 6.01
63 64 1.112113 ACCTATGATCCAGACGCGTT 58.888 50.000 15.53 0.00 0.00 4.84
64 65 1.067212 ACCTATGATCCAGACGCGTTC 59.933 52.381 15.53 7.14 0.00 3.95
66 67 2.223829 CCTATGATCCAGACGCGTTCTT 60.224 50.000 15.53 7.37 28.96 2.52
67 68 3.004419 CCTATGATCCAGACGCGTTCTTA 59.996 47.826 15.53 8.18 28.96 2.10
69 70 1.542472 TGATCCAGACGCGTTCTTACA 59.458 47.619 15.53 7.53 28.96 2.41
72 73 3.034721 TCCAGACGCGTTCTTACAATT 57.965 42.857 15.53 0.00 28.96 2.32
73 74 2.734606 TCCAGACGCGTTCTTACAATTG 59.265 45.455 15.53 3.24 28.96 2.32
74 75 2.495939 CAGACGCGTTCTTACAATTGC 58.504 47.619 15.53 0.00 28.96 3.56
75 76 2.096466 CAGACGCGTTCTTACAATTGCA 60.096 45.455 15.53 0.00 28.96 4.08
76 77 2.546368 AGACGCGTTCTTACAATTGCAA 59.454 40.909 15.53 0.00 0.00 4.08
77 78 2.646250 ACGCGTTCTTACAATTGCAAC 58.354 42.857 5.58 3.02 0.00 4.17
78 79 2.032302 ACGCGTTCTTACAATTGCAACA 59.968 40.909 5.58 0.00 0.00 3.33
79 80 3.039405 CGCGTTCTTACAATTGCAACAA 58.961 40.909 0.00 0.00 0.00 2.83
80 81 3.668191 CGCGTTCTTACAATTGCAACAAT 59.332 39.130 0.00 0.00 0.00 2.71
81 82 4.431471 CGCGTTCTTACAATTGCAACAATG 60.431 41.667 0.00 4.08 0.00 2.82
82 83 4.679197 GCGTTCTTACAATTGCAACAATGA 59.321 37.500 0.00 0.00 0.00 2.57
83 84 5.387342 GCGTTCTTACAATTGCAACAATGAC 60.387 40.000 0.00 0.00 0.00 3.06
84 85 5.164292 CGTTCTTACAATTGCAACAATGACG 60.164 40.000 0.00 3.70 0.00 4.35
85 86 4.793071 TCTTACAATTGCAACAATGACGG 58.207 39.130 0.00 0.00 0.00 4.79
86 87 4.277174 TCTTACAATTGCAACAATGACGGT 59.723 37.500 0.00 0.00 0.00 4.83
89 90 3.122297 CAATTGCAACAATGACGGTGTT 58.878 40.909 0.00 0.00 39.79 3.32
92 93 2.782171 CAACAATGACGGTGTTGCG 58.218 52.632 4.52 0.00 46.63 4.85
96 97 1.402259 ACAATGACGGTGTTGCGAAAA 59.598 42.857 0.00 0.00 0.00 2.29
97 98 1.778591 CAATGACGGTGTTGCGAAAAC 59.221 47.619 0.00 0.00 0.00 2.43
98 99 1.305201 ATGACGGTGTTGCGAAAACT 58.695 45.000 0.00 0.00 0.00 2.66
99 100 1.088306 TGACGGTGTTGCGAAAACTT 58.912 45.000 0.00 0.00 0.00 2.66
100 101 1.469308 TGACGGTGTTGCGAAAACTTT 59.531 42.857 0.00 0.00 0.00 2.66
101 102 2.106418 GACGGTGTTGCGAAAACTTTC 58.894 47.619 0.00 0.00 0.00 2.62
114 115 4.597079 GAAAACTTTCGCAACAGATGTCA 58.403 39.130 0.00 0.00 0.00 3.58
116 117 3.818961 ACTTTCGCAACAGATGTCATG 57.181 42.857 0.00 0.00 0.00 3.07
117 118 3.141398 ACTTTCGCAACAGATGTCATGT 58.859 40.909 0.00 0.00 0.00 3.21
118 119 3.565482 ACTTTCGCAACAGATGTCATGTT 59.435 39.130 0.00 0.00 41.47 2.71
119 120 4.754618 ACTTTCGCAACAGATGTCATGTTA 59.245 37.500 0.00 0.00 38.80 2.41
120 121 5.412594 ACTTTCGCAACAGATGTCATGTTAT 59.587 36.000 0.00 0.00 38.80 1.89
121 122 4.863152 TCGCAACAGATGTCATGTTATG 57.137 40.909 0.00 0.00 38.80 1.90
122 123 3.622612 TCGCAACAGATGTCATGTTATGG 59.377 43.478 0.00 0.00 38.80 2.74
123 124 3.622612 CGCAACAGATGTCATGTTATGGA 59.377 43.478 0.00 0.00 38.80 3.41
124 125 4.094739 CGCAACAGATGTCATGTTATGGAA 59.905 41.667 0.00 0.00 38.80 3.53
125 126 5.391843 CGCAACAGATGTCATGTTATGGAAA 60.392 40.000 0.00 0.00 38.80 3.13
126 127 5.801947 GCAACAGATGTCATGTTATGGAAAC 59.198 40.000 0.00 0.00 38.80 2.78
127 128 6.349611 GCAACAGATGTCATGTTATGGAAACT 60.350 38.462 0.00 0.00 38.80 2.66
130 131 8.181904 ACAGATGTCATGTTATGGAAACTTTT 57.818 30.769 0.00 0.00 0.00 2.27
131 132 8.084073 ACAGATGTCATGTTATGGAAACTTTTG 58.916 33.333 0.00 0.00 0.00 2.44
132 133 7.062605 CAGATGTCATGTTATGGAAACTTTTGC 59.937 37.037 0.00 0.00 0.00 3.68
133 134 6.154203 TGTCATGTTATGGAAACTTTTGCA 57.846 33.333 0.00 0.00 42.66 4.08
134 135 6.577103 TGTCATGTTATGGAAACTTTTGCAA 58.423 32.000 0.00 0.00 41.79 4.08
138 139 7.550551 TCATGTTATGGAAACTTTTGCAACAAA 59.449 29.630 0.00 0.00 41.79 2.83
139 140 7.301068 TGTTATGGAAACTTTTGCAACAAAG 57.699 32.000 0.00 3.69 41.79 2.77
140 141 4.880886 ATGGAAACTTTTGCAACAAAGC 57.119 36.364 10.19 0.00 41.79 3.51
141 142 3.936564 TGGAAACTTTTGCAACAAAGCT 58.063 36.364 10.19 0.00 35.52 3.74
142 143 3.932089 TGGAAACTTTTGCAACAAAGCTC 59.068 39.130 10.19 7.58 35.52 4.09
143 144 3.000222 GGAAACTTTTGCAACAAAGCTCG 60.000 43.478 10.19 0.00 34.99 5.03
146 147 2.094752 ACTTTTGCAACAAAGCTCGTGT 60.095 40.909 10.19 0.00 34.99 4.49
147 148 2.645730 TTTGCAACAAAGCTCGTGTT 57.354 40.000 0.00 9.38 39.79 3.32
150 151 3.620615 CAACAAAGCTCGTGTTGCA 57.379 47.368 22.93 0.00 46.63 4.08
151 152 1.469917 CAACAAAGCTCGTGTTGCAG 58.530 50.000 22.93 7.24 46.63 4.41
153 154 1.378531 ACAAAGCTCGTGTTGCAGAA 58.621 45.000 0.00 0.00 0.00 3.02
154 155 1.742831 ACAAAGCTCGTGTTGCAGAAA 59.257 42.857 0.00 0.00 0.00 2.52
155 156 2.223340 ACAAAGCTCGTGTTGCAGAAAG 60.223 45.455 0.00 0.00 0.00 2.62
156 157 1.668419 AAGCTCGTGTTGCAGAAAGT 58.332 45.000 0.00 0.00 0.00 2.66
159 160 2.423538 AGCTCGTGTTGCAGAAAGTTTT 59.576 40.909 0.00 0.00 0.00 2.43
160 161 2.531508 GCTCGTGTTGCAGAAAGTTTTG 59.468 45.455 0.00 0.00 0.00 2.44
161 162 2.525055 TCGTGTTGCAGAAAGTTTTGC 58.475 42.857 12.84 12.84 40.67 3.68
167 168 3.865011 TGCAGAAAGTTTTGCAACAGA 57.135 38.095 17.46 0.00 46.42 3.41
169 170 3.193267 TGCAGAAAGTTTTGCAACAGAGT 59.807 39.130 17.46 0.00 46.42 3.24
171 172 4.266265 GCAGAAAGTTTTGCAACAGAGTTC 59.734 41.667 0.00 0.00 40.02 3.01
190 191 8.446273 CAGAGTTCCTGTTACATAATGTTTCTG 58.554 37.037 0.00 0.00 38.10 3.02
191 192 7.119846 AGAGTTCCTGTTACATAATGTTTCTGC 59.880 37.037 0.00 0.00 0.00 4.26
192 193 6.714810 AGTTCCTGTTACATAATGTTTCTGCA 59.285 34.615 0.00 0.00 0.00 4.41
194 195 6.908825 TCCTGTTACATAATGTTTCTGCAAC 58.091 36.000 0.00 0.00 35.71 4.17
195 196 6.072175 TCCTGTTACATAATGTTTCTGCAACC 60.072 38.462 0.00 0.00 33.97 3.77
196 197 5.694816 TGTTACATAATGTTTCTGCAACCG 58.305 37.500 0.00 0.00 33.97 4.44
197 198 5.470437 TGTTACATAATGTTTCTGCAACCGA 59.530 36.000 0.00 0.00 33.97 4.69
198 199 4.685169 ACATAATGTTTCTGCAACCGAG 57.315 40.909 0.00 0.00 33.97 4.63
199 200 3.440173 ACATAATGTTTCTGCAACCGAGG 59.560 43.478 0.00 0.00 33.97 4.63
200 201 1.981256 AATGTTTCTGCAACCGAGGT 58.019 45.000 0.00 0.00 33.97 3.85
201 202 1.523758 ATGTTTCTGCAACCGAGGTC 58.476 50.000 0.00 0.00 33.97 3.85
202 203 0.534203 TGTTTCTGCAACCGAGGTCC 60.534 55.000 0.00 0.00 33.97 4.46
204 205 0.250295 TTTCTGCAACCGAGGTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
205 206 1.407656 TTCTGCAACCGAGGTCCTGT 61.408 55.000 0.00 0.00 0.00 4.00
206 207 1.071471 CTGCAACCGAGGTCCTGTT 59.929 57.895 0.00 0.00 0.00 3.16
207 208 0.320374 CTGCAACCGAGGTCCTGTTA 59.680 55.000 0.00 0.00 0.00 2.41
208 209 0.034337 TGCAACCGAGGTCCTGTTAC 59.966 55.000 0.00 0.00 0.00 2.50
209 210 0.034337 GCAACCGAGGTCCTGTTACA 59.966 55.000 0.00 0.00 0.00 2.41
210 211 1.939838 GCAACCGAGGTCCTGTTACAG 60.940 57.143 5.22 5.22 0.00 2.74
211 212 1.616865 CAACCGAGGTCCTGTTACAGA 59.383 52.381 14.66 0.00 32.44 3.41
213 214 2.322658 ACCGAGGTCCTGTTACAGAAA 58.677 47.619 14.66 0.00 32.44 2.52
214 215 2.701951 ACCGAGGTCCTGTTACAGAAAA 59.298 45.455 14.66 0.00 32.44 2.29
215 216 3.135167 ACCGAGGTCCTGTTACAGAAAAA 59.865 43.478 14.66 0.00 32.44 1.94
266 267 3.687572 CAACATAGATCCTGTTGCAGC 57.312 47.619 19.84 0.00 44.78 5.25
267 268 3.011818 CAACATAGATCCTGTTGCAGCA 58.988 45.455 19.84 2.37 44.78 4.41
269 270 3.474600 ACATAGATCCTGTTGCAGCATC 58.525 45.455 2.87 0.00 29.41 3.91
270 271 3.136077 ACATAGATCCTGTTGCAGCATCT 59.864 43.478 2.87 7.04 41.32 2.90
271 272 2.328819 AGATCCTGTTGCAGCATCTC 57.671 50.000 2.87 1.54 34.24 2.75
272 273 1.558294 AGATCCTGTTGCAGCATCTCA 59.442 47.619 2.87 0.00 34.24 3.27
274 275 2.502142 TCCTGTTGCAGCATCTCATT 57.498 45.000 2.87 0.00 0.00 2.57
275 276 2.089201 TCCTGTTGCAGCATCTCATTG 58.911 47.619 2.87 0.00 0.00 2.82
276 277 1.816835 CCTGTTGCAGCATCTCATTGT 59.183 47.619 2.87 0.00 0.00 2.71
277 278 3.011818 CCTGTTGCAGCATCTCATTGTA 58.988 45.455 2.87 0.00 0.00 2.41
278 279 3.441222 CCTGTTGCAGCATCTCATTGTAA 59.559 43.478 2.87 0.00 0.00 2.41
279 280 4.409570 CTGTTGCAGCATCTCATTGTAAC 58.590 43.478 2.87 0.00 37.75 2.50
281 282 4.161333 GTTGCAGCATCTCATTGTAACAC 58.839 43.478 0.00 0.00 37.37 3.32
282 283 3.410508 TGCAGCATCTCATTGTAACACA 58.589 40.909 0.00 0.00 0.00 3.72
283 284 3.819902 TGCAGCATCTCATTGTAACACAA 59.180 39.130 0.00 0.00 42.95 3.33
284 285 4.161333 GCAGCATCTCATTGTAACACAAC 58.839 43.478 0.00 0.00 41.40 3.32
285 286 4.320421 GCAGCATCTCATTGTAACACAACA 60.320 41.667 0.00 0.00 41.40 3.33
286 287 5.620654 GCAGCATCTCATTGTAACACAACAT 60.621 40.000 0.00 0.00 41.40 2.71
287 288 5.798434 CAGCATCTCATTGTAACACAACATG 59.202 40.000 0.00 0.00 41.40 3.21
319 320 6.899393 AAAAGCACCTTGAGTGATAATTCA 57.101 33.333 0.00 0.00 46.71 2.57
320 321 5.886960 AAGCACCTTGAGTGATAATTCAC 57.113 39.130 0.00 0.00 46.71 3.18
332 333 3.125146 TGATAATTCACTGCAGCGAACAC 59.875 43.478 18.91 10.95 0.00 3.32
335 336 0.742635 TTCACTGCAGCGAACACACA 60.743 50.000 15.27 0.00 0.00 3.72
337 338 0.589729 CACTGCAGCGAACACACAAC 60.590 55.000 15.27 0.00 0.00 3.32
338 339 1.368019 CTGCAGCGAACACACAACG 60.368 57.895 0.00 0.00 0.00 4.10
346 347 3.155344 CGAACACACAACGCTTCTAAG 57.845 47.619 0.00 0.00 0.00 2.18
360 361 5.283457 GCTTCTAAGCCAAGGAGATAAGA 57.717 43.478 3.22 0.00 46.20 2.10
361 362 5.053811 GCTTCTAAGCCAAGGAGATAAGAC 58.946 45.833 3.22 0.00 46.20 3.01
362 363 5.163353 GCTTCTAAGCCAAGGAGATAAGACT 60.163 44.000 3.22 0.00 46.20 3.24
363 364 6.041069 GCTTCTAAGCCAAGGAGATAAGACTA 59.959 42.308 3.22 0.00 46.20 2.59
364 365 7.418025 GCTTCTAAGCCAAGGAGATAAGACTAA 60.418 40.741 3.22 0.00 46.20 2.24
365 366 7.349412 TCTAAGCCAAGGAGATAAGACTAAC 57.651 40.000 0.00 0.00 0.00 2.34
366 367 7.126733 TCTAAGCCAAGGAGATAAGACTAACT 58.873 38.462 0.00 0.00 0.00 2.24
367 368 5.606348 AGCCAAGGAGATAAGACTAACTG 57.394 43.478 0.00 0.00 0.00 3.16
368 369 5.026790 AGCCAAGGAGATAAGACTAACTGT 58.973 41.667 0.00 0.00 0.00 3.55
372 373 6.334202 CAAGGAGATAAGACTAACTGTGACC 58.666 44.000 0.00 0.00 0.00 4.02
373 374 5.833340 AGGAGATAAGACTAACTGTGACCT 58.167 41.667 0.00 0.00 0.00 3.85
374 375 5.654650 AGGAGATAAGACTAACTGTGACCTG 59.345 44.000 0.00 0.00 0.00 4.00
375 376 5.652891 GGAGATAAGACTAACTGTGACCTGA 59.347 44.000 0.00 0.00 0.00 3.86
377 378 7.164230 AGATAAGACTAACTGTGACCTGAAG 57.836 40.000 0.00 0.00 0.00 3.02
380 381 5.871396 AGACTAACTGTGACCTGAAGAAA 57.129 39.130 0.00 0.00 0.00 2.52
382 383 5.598830 AGACTAACTGTGACCTGAAGAAAGA 59.401 40.000 0.00 0.00 0.00 2.52
383 384 5.602628 ACTAACTGTGACCTGAAGAAAGAC 58.397 41.667 0.00 0.00 0.00 3.01
384 385 3.099267 ACTGTGACCTGAAGAAAGACG 57.901 47.619 0.00 0.00 0.00 4.18
385 386 1.795286 CTGTGACCTGAAGAAAGACGC 59.205 52.381 0.00 0.00 0.00 5.19
386 387 1.138069 TGTGACCTGAAGAAAGACGCA 59.862 47.619 0.00 0.00 0.00 5.24
387 388 2.224281 TGTGACCTGAAGAAAGACGCAT 60.224 45.455 0.00 0.00 0.00 4.73
390 391 0.449388 CCTGAAGAAAGACGCATGGC 59.551 55.000 0.00 0.00 0.00 4.40
401 402 2.719979 GCATGGCGATTGGAGCAG 59.280 61.111 0.00 0.00 36.08 4.24
402 403 2.842256 GCATGGCGATTGGAGCAGG 61.842 63.158 0.00 0.00 36.08 4.85
403 404 2.517875 ATGGCGATTGGAGCAGGC 60.518 61.111 0.00 0.00 36.08 4.85
406 407 2.590007 GCGATTGGAGCAGGCGAT 60.590 61.111 0.00 0.00 34.19 4.58
407 408 1.300931 GCGATTGGAGCAGGCGATA 60.301 57.895 0.00 0.00 34.19 2.92
408 409 1.287730 GCGATTGGAGCAGGCGATAG 61.288 60.000 0.00 0.00 34.19 2.08
409 410 0.315251 CGATTGGAGCAGGCGATAGA 59.685 55.000 0.00 0.00 39.76 1.98
418 419 2.340078 GGCGATAGATGCAGCCGA 59.660 61.111 0.00 0.00 40.17 5.54
419 420 1.735920 GGCGATAGATGCAGCCGAG 60.736 63.158 0.00 0.00 40.17 4.63
420 421 1.006805 GCGATAGATGCAGCCGAGT 60.007 57.895 0.00 0.00 39.76 4.18
421 422 1.280886 GCGATAGATGCAGCCGAGTG 61.281 60.000 0.00 0.00 39.76 3.51
423 424 1.067985 CGATAGATGCAGCCGAGTGAT 60.068 52.381 0.00 0.00 39.76 3.06
425 426 0.676184 TAGATGCAGCCGAGTGATCC 59.324 55.000 0.00 0.00 0.00 3.36
426 427 1.953138 GATGCAGCCGAGTGATCCG 60.953 63.158 0.00 0.00 0.00 4.18
433 434 2.885644 CGAGTGATCCGCCGGTTG 60.886 66.667 1.63 0.00 0.00 3.77
435 436 1.144057 GAGTGATCCGCCGGTTGAT 59.856 57.895 1.63 5.31 0.00 2.57
436 437 0.462047 GAGTGATCCGCCGGTTGATT 60.462 55.000 1.63 0.00 0.00 2.57
437 438 0.828022 AGTGATCCGCCGGTTGATTA 59.172 50.000 1.63 0.00 0.00 1.75
438 439 1.416401 AGTGATCCGCCGGTTGATTAT 59.584 47.619 1.63 0.00 0.00 1.28
439 440 2.158813 AGTGATCCGCCGGTTGATTATT 60.159 45.455 1.63 0.00 0.00 1.40
440 441 3.070446 AGTGATCCGCCGGTTGATTATTA 59.930 43.478 1.63 0.00 0.00 0.98
441 442 3.432252 GTGATCCGCCGGTTGATTATTAG 59.568 47.826 1.63 0.00 0.00 1.73
442 443 1.873698 TCCGCCGGTTGATTATTAGC 58.126 50.000 1.63 0.00 0.00 3.09
443 444 1.139256 TCCGCCGGTTGATTATTAGCA 59.861 47.619 1.63 0.00 0.00 3.49
444 445 2.151202 CCGCCGGTTGATTATTAGCAT 58.849 47.619 1.90 0.00 0.00 3.79
446 447 3.004315 CCGCCGGTTGATTATTAGCATTT 59.996 43.478 1.90 0.00 0.00 2.32
447 448 4.219033 CGCCGGTTGATTATTAGCATTTC 58.781 43.478 1.90 0.00 0.00 2.17
448 449 4.546570 GCCGGTTGATTATTAGCATTTCC 58.453 43.478 1.90 0.00 0.00 3.13
493 494 0.095417 GCGCAAAGAAGCTAAGACCG 59.905 55.000 0.30 0.00 0.00 4.79
515 516 1.702886 AGACGCAACACATCTTCGAG 58.297 50.000 0.00 0.00 0.00 4.04
517 518 1.057822 CGCAACACATCTTCGAGCG 59.942 57.895 0.00 0.00 37.68 5.03
518 519 1.225854 GCAACACATCTTCGAGCGC 60.226 57.895 0.00 0.00 0.00 5.92
582 583 5.175859 CCGACACACTTCATACCTTGTATT 58.824 41.667 0.00 0.00 0.00 1.89
599 602 9.640963 ACCTTGTATTCATATATCTAAACGCTC 57.359 33.333 0.00 0.00 0.00 5.03
651 657 1.378382 TTGCCGGGTCCATCACATG 60.378 57.895 2.18 0.00 0.00 3.21
656 672 1.302366 CGGGTCCATCACATGACATG 58.698 55.000 14.02 14.02 0.00 3.21
659 675 1.935873 GGTCCATCACATGACATGACG 59.064 52.381 22.19 12.07 0.00 4.35
766 808 2.031919 GCCATCCACACCACACGA 59.968 61.111 0.00 0.00 0.00 4.35
785 827 3.739167 CCGGTCAAAAACGGCTCA 58.261 55.556 0.00 0.00 43.96 4.26
798 840 3.371063 GCTCACTGACGTCCCGGA 61.371 66.667 14.12 6.54 0.00 5.14
799 841 2.711922 GCTCACTGACGTCCCGGAT 61.712 63.158 14.12 0.00 0.00 4.18
848 890 4.069232 CTCGCCTCGCCTCACCAA 62.069 66.667 0.00 0.00 0.00 3.67
855 897 4.680237 CGCCTCACCAACTCGGCA 62.680 66.667 0.00 0.00 42.59 5.69
892 934 7.255801 CCAACCCACACTGACAACTTATTAATT 60.256 37.037 0.00 0.00 0.00 1.40
1206 1278 2.109126 GGACAAGCGCACCATCTCC 61.109 63.158 11.47 0.05 0.00 3.71
1301 1374 2.023414 ATTCCGTCGATTAGGCCGCA 62.023 55.000 0.00 0.00 0.00 5.69
1304 1380 1.944676 CGTCGATTAGGCCGCAGAC 60.945 63.158 0.00 3.45 0.00 3.51
1403 1479 8.495361 TGTTTACTTTACTCTGCAACTTGTAA 57.505 30.769 0.00 0.00 0.00 2.41
1404 1480 8.392612 TGTTTACTTTACTCTGCAACTTGTAAC 58.607 33.333 0.00 0.00 0.00 2.50
1405 1481 8.610035 GTTTACTTTACTCTGCAACTTGTAACT 58.390 33.333 0.00 0.00 0.00 2.24
1406 1482 8.726870 TTACTTTACTCTGCAACTTGTAACTT 57.273 30.769 0.00 0.00 0.00 2.66
1407 1483 7.016361 ACTTTACTCTGCAACTTGTAACTTG 57.984 36.000 0.00 0.00 0.00 3.16
1408 1484 6.598064 ACTTTACTCTGCAACTTGTAACTTGT 59.402 34.615 0.00 0.00 0.00 3.16
1409 1485 7.767198 ACTTTACTCTGCAACTTGTAACTTGTA 59.233 33.333 0.00 0.00 0.00 2.41
1410 1486 7.709269 TTACTCTGCAACTTGTAACTTGTAG 57.291 36.000 0.00 0.00 32.94 2.74
1411 1487 5.671493 ACTCTGCAACTTGTAACTTGTAGT 58.329 37.500 0.00 0.00 33.31 2.73
1412 1488 6.113411 ACTCTGCAACTTGTAACTTGTAGTT 58.887 36.000 0.00 0.00 41.97 2.24
1413 1489 7.270047 ACTCTGCAACTTGTAACTTGTAGTTA 58.730 34.615 0.00 0.00 39.51 2.24
1414 1490 7.931948 ACTCTGCAACTTGTAACTTGTAGTTAT 59.068 33.333 2.92 0.00 42.06 1.89
1415 1491 8.306680 TCTGCAACTTGTAACTTGTAGTTATC 57.693 34.615 2.92 0.00 42.06 1.75
1484 1569 8.432805 AGTACTAAATAAATCCCTCAGATGTGG 58.567 37.037 0.00 0.00 34.56 4.17
1513 1606 1.291132 GTTACCTGCTCTGCGATTCC 58.709 55.000 0.00 0.00 0.00 3.01
1535 1659 5.104527 TCCATCTGTTTCCACCATAACTAGG 60.105 44.000 0.00 0.00 0.00 3.02
1761 1887 9.309516 CTACAATGTTAAATATACACGTCCTGT 57.690 33.333 0.00 0.00 36.82 4.00
1764 1890 8.761497 CAATGTTAAATATACACGTCCTGTAGG 58.239 37.037 0.00 0.00 38.80 3.18
1813 1939 6.000219 AGTGTTCATGTTCTTCAGCTTATGT 59.000 36.000 0.00 0.00 0.00 2.29
2143 2272 4.708726 AACATAGCATTGTTTCTCCTGC 57.291 40.909 0.00 0.00 36.43 4.85
2181 2317 4.222124 AGTGCATAAGGTTTCAGGTAGG 57.778 45.455 0.00 0.00 0.00 3.18
2215 2357 8.807581 GGATTAAAAAGTTGCATAACAGCATAC 58.192 33.333 0.00 0.00 45.19 2.39
2224 2368 5.669477 TGCATAACAGCATACACAGATACA 58.331 37.500 0.00 0.00 40.11 2.29
2251 2410 8.637704 CACAACTATATTTTACACGACGTACAA 58.362 33.333 0.00 0.00 0.00 2.41
2314 2473 8.908903 AGTTATGTTCTCATTGTAACAACCAAA 58.091 29.630 10.03 3.23 38.95 3.28
2446 2606 5.491070 TCCCTTTGGCATTATCATCTATCG 58.509 41.667 0.00 0.00 0.00 2.92
2554 2723 5.887035 TCTTTGAAGAAAGACCCCGTTTAAA 59.113 36.000 0.00 0.00 42.23 1.52
2570 2739 9.647797 CCCCGTTTAAAATTTCTTATTTAAGCT 57.352 29.630 0.00 0.00 33.81 3.74
2629 2799 9.973450 TCATTGCTTTGCTGTAATTTTAAACTA 57.027 25.926 0.00 0.00 0.00 2.24
2668 2866 5.053145 CAGGTGCTGATTAGTCTGGAATAC 58.947 45.833 0.00 0.00 32.44 1.89
2707 2905 3.902261 TTGTGCAGCTGTTTACATCAG 57.098 42.857 16.64 0.00 36.18 2.90
2845 3047 7.962964 TTGTTTATCTTGTAAGTGTCCAGAG 57.037 36.000 0.00 0.00 0.00 3.35
2877 3079 4.584327 TTTTTGCTCCCTTAAACTCTGC 57.416 40.909 0.00 0.00 0.00 4.26
2895 3097 5.990386 ACTCTGCTTCTCATATAGCACATTG 59.010 40.000 0.00 0.00 42.12 2.82
2907 3109 2.555199 AGCACATTGTCCTTATCGCTC 58.445 47.619 0.00 0.00 0.00 5.03
3046 3381 7.759489 TCATAAACTTAAGAAAGGCACATGT 57.241 32.000 10.09 0.00 37.01 3.21
3047 3382 7.816640 TCATAAACTTAAGAAAGGCACATGTC 58.183 34.615 10.09 0.00 37.01 3.06
3139 3485 2.031437 GTGCTAGCTGTGCTAATTGCTC 59.969 50.000 17.23 4.26 40.82 4.26
3209 3557 3.206150 CGCCTTGGTTATGCTCTGTAAT 58.794 45.455 0.00 0.00 0.00 1.89
3217 3565 6.480763 TGGTTATGCTCTGTAATTTCTCCAA 58.519 36.000 0.00 0.00 0.00 3.53
3286 3671 3.057526 GGTTGAGCATTTGTGGTTCTACC 60.058 47.826 0.00 0.00 39.22 3.18
3320 3713 6.883744 TGAGCATAACCAGTTACATGATACA 58.116 36.000 0.00 0.00 0.00 2.29
3326 3719 9.464714 CATAACCAGTTACATGATACACTACTC 57.535 37.037 0.00 0.00 0.00 2.59
3483 4239 5.602628 ACTCAGTGAACTAGTTTTGGTCTC 58.397 41.667 10.02 0.00 0.00 3.36
3518 4274 3.631144 CAATGCACATCTTGTTCAACGT 58.369 40.909 0.00 0.00 25.52 3.99
3533 4289 6.598525 TGTTCAACGTTGCTTATAGAACATG 58.401 36.000 23.47 0.00 38.95 3.21
3699 4459 3.115554 GTTTGCGCAATCTTTGACAAGT 58.884 40.909 25.64 0.00 32.39 3.16
3705 4465 4.737765 GCGCAATCTTTGACAAGTTTGTTA 59.262 37.500 0.30 0.00 42.43 2.41
3711 4471 8.798153 CAATCTTTGACAAGTTTGTTACTTCAC 58.202 33.333 0.00 0.00 45.29 3.18
3765 4525 1.442769 GTGCAGATGGTGTGATCGTT 58.557 50.000 0.00 0.00 0.00 3.85
4117 4890 5.422145 CCATTTCAATGATTTCCTGGGTTC 58.578 41.667 0.81 0.00 38.70 3.62
4196 4975 9.884636 ATATGACAGTGCTAAAATGTACTACAA 57.115 29.630 0.00 0.00 31.88 2.41
4226 5005 5.758296 GCGTGAATAAATGGAGGAATGACTA 59.242 40.000 0.00 0.00 0.00 2.59
4229 5008 6.205658 GTGAATAAATGGAGGAATGACTAGGC 59.794 42.308 0.00 0.00 0.00 3.93
4236 5015 0.179045 GGAATGACTAGGCACGCCAT 60.179 55.000 11.35 0.00 38.92 4.40
4487 5340 1.833630 AGCCAGGAAGATTCGTCATCA 59.166 47.619 2.06 0.00 33.75 3.07
4509 5362 6.303839 TCAAGTTAGTAAAATCACTTGGGCT 58.696 36.000 10.23 0.00 44.20 5.19
4510 5363 6.775629 TCAAGTTAGTAAAATCACTTGGGCTT 59.224 34.615 10.23 0.00 44.20 4.35
4511 5364 7.286775 TCAAGTTAGTAAAATCACTTGGGCTTT 59.713 33.333 10.23 0.00 44.20 3.51
4512 5365 7.597288 AGTTAGTAAAATCACTTGGGCTTTT 57.403 32.000 0.00 0.00 0.00 2.27
4513 5366 8.018537 AGTTAGTAAAATCACTTGGGCTTTTT 57.981 30.769 0.00 0.00 0.00 1.94
4547 5400 1.072331 CACTTGGGCTTACACTCCTGT 59.928 52.381 0.00 0.00 0.00 4.00
4648 5504 5.181009 TCAGATGAAGACCACATAGCTTTG 58.819 41.667 2.27 2.27 0.00 2.77
4654 5510 7.418337 TGAAGACCACATAGCTTTGTAGATA 57.582 36.000 9.60 0.00 0.00 1.98
4683 5539 5.708948 TGAGCATGTTACCTAATGTTTTGC 58.291 37.500 0.00 0.00 0.00 3.68
4769 5633 6.168270 AGCTCTAGATTATGAAACAGGGTC 57.832 41.667 0.00 0.00 0.00 4.46
4830 5694 9.119418 CTTTCTTCTCCTTTTCTTCTTCTTCTT 57.881 33.333 0.00 0.00 0.00 2.52
4831 5695 8.669946 TTCTTCTCCTTTTCTTCTTCTTCTTC 57.330 34.615 0.00 0.00 0.00 2.87
4832 5696 8.028652 TCTTCTCCTTTTCTTCTTCTTCTTCT 57.971 34.615 0.00 0.00 0.00 2.85
4846 5710 8.600449 TCTTCTTCTTCTCTCAAGATTCAAAC 57.400 34.615 0.00 0.00 0.00 2.93
4851 5715 7.060383 TCTTCTCTCAAGATTCAAACACTCT 57.940 36.000 0.00 0.00 0.00 3.24
4856 5720 7.225538 TCTCTCAAGATTCAAACACTCTTCAAC 59.774 37.037 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.875933 CCGAGCCGGCAGATATTTTTAA 59.124 45.455 31.54 0.00 41.17 1.52
21 22 1.409427 ACACTAGATCTAACGGCTGCC 59.591 52.381 9.11 9.11 0.00 4.85
22 23 2.099263 TGACACTAGATCTAACGGCTGC 59.901 50.000 3.57 0.00 0.00 5.25
24 25 3.130693 GGTTGACACTAGATCTAACGGCT 59.869 47.826 3.57 0.00 0.00 5.52
26 27 4.985538 AGGTTGACACTAGATCTAACGG 57.014 45.455 3.57 0.00 0.00 4.44
27 28 7.260558 TCATAGGTTGACACTAGATCTAACG 57.739 40.000 3.57 0.38 0.00 3.18
28 29 8.301002 GGATCATAGGTTGACACTAGATCTAAC 58.699 40.741 3.57 0.00 37.11 2.34
29 30 8.004801 TGGATCATAGGTTGACACTAGATCTAA 58.995 37.037 3.57 0.00 37.11 2.10
30 31 7.526918 TGGATCATAGGTTGACACTAGATCTA 58.473 38.462 1.69 1.69 37.11 1.98
32 33 6.491745 TCTGGATCATAGGTTGACACTAGATC 59.508 42.308 0.00 0.00 37.11 2.75
34 35 5.594725 GTCTGGATCATAGGTTGACACTAGA 59.405 44.000 0.00 0.00 37.11 2.43
35 36 5.506483 CGTCTGGATCATAGGTTGACACTAG 60.506 48.000 0.00 0.00 37.11 2.57
36 37 4.338400 CGTCTGGATCATAGGTTGACACTA 59.662 45.833 0.00 0.00 37.11 2.74
37 38 3.131223 CGTCTGGATCATAGGTTGACACT 59.869 47.826 0.00 0.00 37.11 3.55
39 40 2.159099 GCGTCTGGATCATAGGTTGACA 60.159 50.000 0.00 0.00 37.11 3.58
41 42 1.067060 CGCGTCTGGATCATAGGTTGA 59.933 52.381 0.00 0.00 39.12 3.18
42 43 1.202417 ACGCGTCTGGATCATAGGTTG 60.202 52.381 5.58 0.00 0.00 3.77
43 44 1.112113 ACGCGTCTGGATCATAGGTT 58.888 50.000 5.58 0.00 0.00 3.50
44 45 1.067212 GAACGCGTCTGGATCATAGGT 59.933 52.381 14.44 0.00 0.00 3.08
46 47 2.783828 AGAACGCGTCTGGATCATAG 57.216 50.000 14.44 0.00 34.29 2.23
48 49 2.165641 TGTAAGAACGCGTCTGGATCAT 59.834 45.455 14.44 0.78 36.40 2.45
49 50 1.542472 TGTAAGAACGCGTCTGGATCA 59.458 47.619 14.44 5.53 36.40 2.92
50 51 2.273370 TGTAAGAACGCGTCTGGATC 57.727 50.000 14.44 5.88 36.40 3.36
51 52 2.736144 TTGTAAGAACGCGTCTGGAT 57.264 45.000 14.44 0.00 36.40 3.41
52 53 2.734606 CAATTGTAAGAACGCGTCTGGA 59.265 45.455 14.44 0.00 36.40 3.86
53 54 2.724839 GCAATTGTAAGAACGCGTCTGG 60.725 50.000 14.44 0.00 36.40 3.86
54 55 2.096466 TGCAATTGTAAGAACGCGTCTG 60.096 45.455 14.44 0.20 36.40 3.51
55 56 2.139917 TGCAATTGTAAGAACGCGTCT 58.860 42.857 14.44 8.97 38.69 4.18
56 57 2.587612 TGCAATTGTAAGAACGCGTC 57.412 45.000 14.44 6.38 0.00 5.19
57 58 2.032302 TGTTGCAATTGTAAGAACGCGT 59.968 40.909 5.58 5.58 0.00 6.01
58 59 2.645163 TGTTGCAATTGTAAGAACGCG 58.355 42.857 9.39 3.53 0.00 6.01
60 61 5.164292 CGTCATTGTTGCAATTGTAAGAACG 60.164 40.000 18.60 15.15 0.00 3.95
61 62 5.116983 CCGTCATTGTTGCAATTGTAAGAAC 59.883 40.000 18.60 8.38 0.00 3.01
62 63 5.218885 CCGTCATTGTTGCAATTGTAAGAA 58.781 37.500 18.54 18.54 0.00 2.52
63 64 4.277174 ACCGTCATTGTTGCAATTGTAAGA 59.723 37.500 9.39 5.57 0.00 2.10
64 65 4.382457 CACCGTCATTGTTGCAATTGTAAG 59.618 41.667 9.39 0.00 0.00 2.34
66 67 3.316588 ACACCGTCATTGTTGCAATTGTA 59.683 39.130 0.59 0.00 0.00 2.41
67 68 2.100584 ACACCGTCATTGTTGCAATTGT 59.899 40.909 0.59 0.00 0.00 2.71
69 70 3.122297 CAACACCGTCATTGTTGCAATT 58.878 40.909 0.59 0.00 45.36 2.32
72 73 3.934521 CAACACCGTCATTGTTGCA 57.065 47.368 2.50 0.00 45.36 4.08
75 76 1.018148 TTCGCAACACCGTCATTGTT 58.982 45.000 0.00 0.00 37.69 2.83
76 77 1.018148 TTTCGCAACACCGTCATTGT 58.982 45.000 0.00 0.00 0.00 2.71
77 78 1.778591 GTTTTCGCAACACCGTCATTG 59.221 47.619 0.00 0.00 0.00 2.82
78 79 1.673920 AGTTTTCGCAACACCGTCATT 59.326 42.857 0.86 0.00 0.00 2.57
79 80 1.305201 AGTTTTCGCAACACCGTCAT 58.695 45.000 0.86 0.00 0.00 3.06
80 81 1.088306 AAGTTTTCGCAACACCGTCA 58.912 45.000 0.86 0.00 0.00 4.35
81 82 2.106418 GAAAGTTTTCGCAACACCGTC 58.894 47.619 0.00 0.00 0.00 4.79
82 83 2.182904 GAAAGTTTTCGCAACACCGT 57.817 45.000 0.00 0.00 0.00 4.83
92 93 4.597079 TGACATCTGTTGCGAAAGTTTTC 58.403 39.130 0.00 0.00 0.00 2.29
96 97 3.141398 ACATGACATCTGTTGCGAAAGT 58.859 40.909 0.00 0.00 0.00 2.66
97 98 3.818961 ACATGACATCTGTTGCGAAAG 57.181 42.857 0.00 0.00 0.00 2.62
98 99 5.391843 CCATAACATGACATCTGTTGCGAAA 60.392 40.000 0.00 0.00 37.41 3.46
99 100 4.094739 CCATAACATGACATCTGTTGCGAA 59.905 41.667 0.00 0.00 37.41 4.70
100 101 3.622612 CCATAACATGACATCTGTTGCGA 59.377 43.478 0.00 0.00 37.41 5.10
101 102 3.622612 TCCATAACATGACATCTGTTGCG 59.377 43.478 0.00 0.00 37.41 4.85
102 103 5.565592 TTCCATAACATGACATCTGTTGC 57.434 39.130 0.00 0.00 37.41 4.17
105 106 7.765695 AAAGTTTCCATAACATGACATCTGT 57.234 32.000 0.00 0.00 0.00 3.41
106 107 7.062605 GCAAAAGTTTCCATAACATGACATCTG 59.937 37.037 0.00 0.00 0.00 2.90
107 108 7.092716 GCAAAAGTTTCCATAACATGACATCT 58.907 34.615 0.00 0.00 0.00 2.90
110 111 6.154203 TGCAAAAGTTTCCATAACATGACA 57.846 33.333 0.00 0.00 0.00 3.58
111 112 6.478344 TGTTGCAAAAGTTTCCATAACATGAC 59.522 34.615 0.00 0.00 0.00 3.06
113 114 6.841443 TGTTGCAAAAGTTTCCATAACATG 57.159 33.333 0.00 0.00 0.00 3.21
114 115 7.467131 GCTTTGTTGCAAAAGTTTCCATAACAT 60.467 33.333 0.00 0.00 39.02 2.71
116 117 6.037062 AGCTTTGTTGCAAAAGTTTCCATAAC 59.963 34.615 0.00 0.00 39.02 1.89
117 118 6.112058 AGCTTTGTTGCAAAAGTTTCCATAA 58.888 32.000 0.00 0.00 39.02 1.90
118 119 5.669477 AGCTTTGTTGCAAAAGTTTCCATA 58.331 33.333 0.00 0.00 39.02 2.74
119 120 4.516323 AGCTTTGTTGCAAAAGTTTCCAT 58.484 34.783 0.00 0.00 39.02 3.41
120 121 3.932089 GAGCTTTGTTGCAAAAGTTTCCA 59.068 39.130 0.00 0.00 39.02 3.53
121 122 3.000222 CGAGCTTTGTTGCAAAAGTTTCC 60.000 43.478 0.00 0.00 39.02 3.13
122 123 3.612423 ACGAGCTTTGTTGCAAAAGTTTC 59.388 39.130 0.00 4.39 39.02 2.78
123 124 3.367630 CACGAGCTTTGTTGCAAAAGTTT 59.632 39.130 0.00 0.00 39.02 2.66
124 125 2.923020 CACGAGCTTTGTTGCAAAAGTT 59.077 40.909 0.00 0.00 39.02 2.66
125 126 2.094752 ACACGAGCTTTGTTGCAAAAGT 60.095 40.909 0.00 0.00 39.02 2.66
126 127 2.529151 ACACGAGCTTTGTTGCAAAAG 58.471 42.857 0.00 3.27 39.66 2.27
127 128 2.645730 ACACGAGCTTTGTTGCAAAA 57.354 40.000 0.00 0.00 34.99 2.44
130 131 3.620615 CAACACGAGCTTTGTTGCA 57.379 47.368 22.18 0.00 45.36 4.08
133 134 1.378531 TCTGCAACACGAGCTTTGTT 58.621 45.000 8.47 8.47 37.69 2.83
134 135 1.378531 TTCTGCAACACGAGCTTTGT 58.621 45.000 0.00 0.00 0.00 2.83
138 139 1.668419 AACTTTCTGCAACACGAGCT 58.332 45.000 0.00 0.00 0.00 4.09
139 140 2.475200 AAACTTTCTGCAACACGAGC 57.525 45.000 0.00 0.00 0.00 5.03
140 141 2.531508 GCAAAACTTTCTGCAACACGAG 59.468 45.455 0.00 0.00 38.48 4.18
141 142 2.095008 TGCAAAACTTTCTGCAACACGA 60.095 40.909 0.00 0.00 45.25 4.35
142 143 2.257894 TGCAAAACTTTCTGCAACACG 58.742 42.857 8.17 0.00 45.25 4.49
147 148 3.193267 ACTCTGTTGCAAAACTTTCTGCA 59.807 39.130 0.00 7.06 46.50 4.41
148 149 3.774066 ACTCTGTTGCAAAACTTTCTGC 58.226 40.909 0.00 0.00 39.09 4.26
149 150 4.800471 GGAACTCTGTTGCAAAACTTTCTG 59.200 41.667 0.00 0.00 0.00 3.02
150 151 4.706962 AGGAACTCTGTTGCAAAACTTTCT 59.293 37.500 0.00 0.00 0.00 2.52
151 152 4.800471 CAGGAACTCTGTTGCAAAACTTTC 59.200 41.667 0.00 0.64 34.60 2.62
153 154 4.376340 CAGGAACTCTGTTGCAAAACTT 57.624 40.909 0.00 0.00 34.60 2.66
165 166 7.119846 GCAGAAACATTATGTAACAGGAACTCT 59.880 37.037 0.00 0.00 34.60 3.24
166 167 7.094805 TGCAGAAACATTATGTAACAGGAACTC 60.095 37.037 0.00 0.00 34.60 3.01
167 168 6.714810 TGCAGAAACATTATGTAACAGGAACT 59.285 34.615 0.00 0.00 43.88 3.01
169 170 7.367285 GTTGCAGAAACATTATGTAACAGGAA 58.633 34.615 11.86 0.00 38.77 3.36
171 172 6.092748 GGTTGCAGAAACATTATGTAACAGG 58.907 40.000 16.46 0.00 40.11 4.00
174 175 5.933790 TCGGTTGCAGAAACATTATGTAAC 58.066 37.500 0.00 9.27 40.86 2.50
175 176 5.123186 CCTCGGTTGCAGAAACATTATGTAA 59.877 40.000 0.00 0.00 40.86 2.41
176 177 4.634004 CCTCGGTTGCAGAAACATTATGTA 59.366 41.667 0.00 0.00 40.86 2.29
177 178 3.440173 CCTCGGTTGCAGAAACATTATGT 59.560 43.478 0.00 0.00 40.86 2.29
178 179 3.440173 ACCTCGGTTGCAGAAACATTATG 59.560 43.478 0.00 0.00 40.86 1.90
181 182 1.880027 GACCTCGGTTGCAGAAACATT 59.120 47.619 0.00 0.00 40.86 2.71
182 183 1.523758 GACCTCGGTTGCAGAAACAT 58.476 50.000 0.00 0.00 40.86 2.71
184 185 0.250338 AGGACCTCGGTTGCAGAAAC 60.250 55.000 0.00 0.00 38.12 2.78
187 188 1.407656 AACAGGACCTCGGTTGCAGA 61.408 55.000 0.00 0.00 32.70 4.26
188 189 0.320374 TAACAGGACCTCGGTTGCAG 59.680 55.000 7.34 0.00 35.49 4.41
190 191 0.034337 TGTAACAGGACCTCGGTTGC 59.966 55.000 7.34 6.65 36.89 4.17
191 192 1.616865 TCTGTAACAGGACCTCGGTTG 59.383 52.381 7.34 0.00 35.49 3.77
192 193 2.005370 TCTGTAACAGGACCTCGGTT 57.995 50.000 0.00 0.00 37.52 4.44
194 195 3.396260 TTTTCTGTAACAGGACCTCGG 57.604 47.619 0.00 0.00 31.51 4.63
247 248 3.354948 TGCTGCAACAGGATCTATGTT 57.645 42.857 0.00 10.01 41.47 2.71
248 249 3.572632 ATGCTGCAACAGGATCTATGT 57.427 42.857 6.36 0.00 38.06 2.29
255 256 2.089201 CAATGAGATGCTGCAACAGGA 58.911 47.619 6.36 0.00 36.05 3.86
257 258 4.083164 TGTTACAATGAGATGCTGCAACAG 60.083 41.667 6.36 0.16 34.12 3.16
258 259 3.819902 TGTTACAATGAGATGCTGCAACA 59.180 39.130 6.36 8.18 0.00 3.33
259 260 4.161333 GTGTTACAATGAGATGCTGCAAC 58.839 43.478 6.36 3.53 0.00 4.17
262 263 4.161333 GTTGTGTTACAATGAGATGCTGC 58.839 43.478 0.00 0.00 40.59 5.25
263 264 5.361135 TGTTGTGTTACAATGAGATGCTG 57.639 39.130 0.00 0.00 40.59 4.41
265 266 5.570206 CACATGTTGTGTTACAATGAGATGC 59.430 40.000 0.00 0.00 43.08 3.91
295 296 7.288810 TGAATTATCACTCAAGGTGCTTTTT 57.711 32.000 0.00 0.00 44.98 1.94
296 297 6.899393 TGAATTATCACTCAAGGTGCTTTT 57.101 33.333 0.00 0.00 44.98 2.27
311 312 3.125146 TGTGTTCGCTGCAGTGAATTATC 59.875 43.478 37.30 26.70 44.97 1.75
313 314 2.223144 GTGTGTTCGCTGCAGTGAATTA 59.777 45.455 37.30 27.87 44.97 1.40
314 315 1.002468 GTGTGTTCGCTGCAGTGAATT 60.002 47.619 37.30 0.00 44.97 2.17
315 316 0.588252 GTGTGTTCGCTGCAGTGAAT 59.412 50.000 37.30 0.00 44.97 2.57
316 317 0.742635 TGTGTGTTCGCTGCAGTGAA 60.743 50.000 33.20 33.20 41.67 3.18
319 320 1.721487 GTTGTGTGTTCGCTGCAGT 59.279 52.632 16.64 0.00 0.00 4.40
320 321 1.368019 CGTTGTGTGTTCGCTGCAG 60.368 57.895 10.11 10.11 0.00 4.41
321 322 2.706432 CGTTGTGTGTTCGCTGCA 59.294 55.556 0.00 0.00 0.00 4.41
322 323 2.722188 GCGTTGTGTGTTCGCTGC 60.722 61.111 0.00 0.00 45.29 5.25
327 328 2.904915 GCTTAGAAGCGTTGTGTGTTC 58.095 47.619 0.00 0.00 42.88 3.18
340 341 7.620094 AGTTAGTCTTATCTCCTTGGCTTAGAA 59.380 37.037 0.00 0.00 0.00 2.10
341 342 7.068839 CAGTTAGTCTTATCTCCTTGGCTTAGA 59.931 40.741 0.00 0.00 0.00 2.10
342 343 7.147811 ACAGTTAGTCTTATCTCCTTGGCTTAG 60.148 40.741 0.00 0.00 0.00 2.18
343 344 6.668283 ACAGTTAGTCTTATCTCCTTGGCTTA 59.332 38.462 0.00 0.00 0.00 3.09
344 345 5.485708 ACAGTTAGTCTTATCTCCTTGGCTT 59.514 40.000 0.00 0.00 0.00 4.35
346 347 5.105310 TCACAGTTAGTCTTATCTCCTTGGC 60.105 44.000 0.00 0.00 0.00 4.52
347 348 6.334202 GTCACAGTTAGTCTTATCTCCTTGG 58.666 44.000 0.00 0.00 0.00 3.61
348 349 6.153680 AGGTCACAGTTAGTCTTATCTCCTTG 59.846 42.308 0.00 0.00 0.00 3.61
349 350 6.153680 CAGGTCACAGTTAGTCTTATCTCCTT 59.846 42.308 0.00 0.00 0.00 3.36
350 351 5.654650 CAGGTCACAGTTAGTCTTATCTCCT 59.345 44.000 0.00 0.00 0.00 3.69
351 352 5.652891 TCAGGTCACAGTTAGTCTTATCTCC 59.347 44.000 0.00 0.00 0.00 3.71
352 353 6.761099 TCAGGTCACAGTTAGTCTTATCTC 57.239 41.667 0.00 0.00 0.00 2.75
353 354 6.948886 TCTTCAGGTCACAGTTAGTCTTATCT 59.051 38.462 0.00 0.00 0.00 1.98
354 355 7.159322 TCTTCAGGTCACAGTTAGTCTTATC 57.841 40.000 0.00 0.00 0.00 1.75
355 356 7.540474 TTCTTCAGGTCACAGTTAGTCTTAT 57.460 36.000 0.00 0.00 0.00 1.73
356 357 6.971726 TTCTTCAGGTCACAGTTAGTCTTA 57.028 37.500 0.00 0.00 0.00 2.10
357 358 5.871396 TTCTTCAGGTCACAGTTAGTCTT 57.129 39.130 0.00 0.00 0.00 3.01
358 359 5.598830 TCTTTCTTCAGGTCACAGTTAGTCT 59.401 40.000 0.00 0.00 0.00 3.24
359 360 5.692654 GTCTTTCTTCAGGTCACAGTTAGTC 59.307 44.000 0.00 0.00 0.00 2.59
360 361 5.602628 GTCTTTCTTCAGGTCACAGTTAGT 58.397 41.667 0.00 0.00 0.00 2.24
361 362 4.681942 CGTCTTTCTTCAGGTCACAGTTAG 59.318 45.833 0.00 0.00 0.00 2.34
362 363 4.617959 CGTCTTTCTTCAGGTCACAGTTA 58.382 43.478 0.00 0.00 0.00 2.24
363 364 3.458189 CGTCTTTCTTCAGGTCACAGTT 58.542 45.455 0.00 0.00 0.00 3.16
364 365 2.803492 GCGTCTTTCTTCAGGTCACAGT 60.803 50.000 0.00 0.00 0.00 3.55
365 366 1.795286 GCGTCTTTCTTCAGGTCACAG 59.205 52.381 0.00 0.00 0.00 3.66
366 367 1.138069 TGCGTCTTTCTTCAGGTCACA 59.862 47.619 0.00 0.00 0.00 3.58
367 368 1.865865 TGCGTCTTTCTTCAGGTCAC 58.134 50.000 0.00 0.00 0.00 3.67
368 369 2.416747 CATGCGTCTTTCTTCAGGTCA 58.583 47.619 0.00 0.00 0.00 4.02
372 373 3.984292 GCCATGCGTCTTTCTTCAG 57.016 52.632 0.00 0.00 0.00 3.02
384 385 2.719979 CTGCTCCAATCGCCATGC 59.280 61.111 0.00 0.00 0.00 4.06
385 386 2.842256 GCCTGCTCCAATCGCCATG 61.842 63.158 0.00 0.00 0.00 3.66
386 387 2.517875 GCCTGCTCCAATCGCCAT 60.518 61.111 0.00 0.00 0.00 4.40
390 391 0.315251 TCTATCGCCTGCTCCAATCG 59.685 55.000 0.00 0.00 0.00 3.34
391 392 2.344950 CATCTATCGCCTGCTCCAATC 58.655 52.381 0.00 0.00 0.00 2.67
392 393 1.610102 GCATCTATCGCCTGCTCCAAT 60.610 52.381 0.00 0.00 33.15 3.16
394 395 1.368950 GCATCTATCGCCTGCTCCA 59.631 57.895 0.00 0.00 33.15 3.86
395 396 0.669932 CTGCATCTATCGCCTGCTCC 60.670 60.000 0.00 0.00 36.84 4.70
396 397 1.290491 GCTGCATCTATCGCCTGCTC 61.290 60.000 0.00 0.00 36.84 4.26
397 398 1.301558 GCTGCATCTATCGCCTGCT 60.302 57.895 0.00 0.00 36.84 4.24
398 399 2.323580 GGCTGCATCTATCGCCTGC 61.324 63.158 0.50 0.00 39.42 4.85
399 400 2.025969 CGGCTGCATCTATCGCCTG 61.026 63.158 10.32 1.38 40.34 4.85
400 401 2.152297 CTCGGCTGCATCTATCGCCT 62.152 60.000 10.32 0.00 40.34 5.52
401 402 1.735920 CTCGGCTGCATCTATCGCC 60.736 63.158 0.50 2.38 39.14 5.54
402 403 1.006805 ACTCGGCTGCATCTATCGC 60.007 57.895 0.50 0.00 0.00 4.58
403 404 0.312102 TCACTCGGCTGCATCTATCG 59.688 55.000 0.50 0.00 0.00 2.92
404 405 2.605030 GATCACTCGGCTGCATCTATC 58.395 52.381 0.50 0.00 0.00 2.08
406 407 0.676184 GGATCACTCGGCTGCATCTA 59.324 55.000 0.50 0.00 0.00 1.98
407 408 1.445095 GGATCACTCGGCTGCATCT 59.555 57.895 0.50 0.00 0.00 2.90
408 409 1.953138 CGGATCACTCGGCTGCATC 60.953 63.158 0.50 0.00 0.00 3.91
409 410 2.107750 CGGATCACTCGGCTGCAT 59.892 61.111 0.50 0.00 0.00 3.96
416 417 2.629050 ATCAACCGGCGGATCACTCG 62.629 60.000 35.78 8.71 0.00 4.18
417 418 0.462047 AATCAACCGGCGGATCACTC 60.462 55.000 35.78 0.00 0.00 3.51
418 419 0.828022 TAATCAACCGGCGGATCACT 59.172 50.000 35.78 15.91 0.00 3.41
419 420 1.878953 ATAATCAACCGGCGGATCAC 58.121 50.000 35.78 0.00 0.00 3.06
420 421 2.631160 AATAATCAACCGGCGGATCA 57.369 45.000 35.78 7.97 0.00 2.92
421 422 2.415512 GCTAATAATCAACCGGCGGATC 59.584 50.000 35.78 0.76 0.00 3.36
423 424 1.139256 TGCTAATAATCAACCGGCGGA 59.861 47.619 35.78 11.41 0.00 5.54
425 426 3.896648 AATGCTAATAATCAACCGGCG 57.103 42.857 0.00 0.00 0.00 6.46
426 427 4.546570 GGAAATGCTAATAATCAACCGGC 58.453 43.478 0.00 0.00 0.00 6.13
428 429 5.766150 TGGGAAATGCTAATAATCAACCG 57.234 39.130 0.00 0.00 0.00 4.44
429 430 9.643693 CAATATGGGAAATGCTAATAATCAACC 57.356 33.333 0.00 0.00 0.00 3.77
446 447 6.096705 CAGCTAATGTTGTTTCCAATATGGGA 59.903 38.462 0.00 0.00 38.32 4.37
447 448 6.275335 CAGCTAATGTTGTTTCCAATATGGG 58.725 40.000 0.00 0.00 38.32 4.00
448 449 5.750067 GCAGCTAATGTTGTTTCCAATATGG 59.250 40.000 0.00 0.00 39.43 2.74
473 474 1.156736 GGTCTTAGCTTCTTTGCGCA 58.843 50.000 5.66 5.66 38.13 6.09
487 488 0.935196 GTGTTGCGTCTTTCGGTCTT 59.065 50.000 0.00 0.00 40.26 3.01
522 523 1.808411 TCAATTGGCGGAAGAGACAC 58.192 50.000 5.42 0.00 0.00 3.67
527 528 3.591196 CCATTTTCAATTGGCGGAAGA 57.409 42.857 5.42 0.00 0.00 2.87
615 618 2.029380 GCAACACATTTTGTACCCCCTC 60.029 50.000 0.00 0.00 37.51 4.30
620 623 1.336424 CCCGGCAACACATTTTGTACC 60.336 52.381 0.00 0.00 37.51 3.34
651 657 1.658717 CTCGGATCCGCGTCATGTC 60.659 63.158 29.62 0.00 39.59 3.06
656 672 2.899044 CTCCTCTCGGATCCGCGTC 61.899 68.421 29.62 0.00 39.01 5.19
659 675 2.265182 CCTCTCCTCTCGGATCCGC 61.265 68.421 29.62 0.00 39.01 5.54
739 761 1.264826 GTGTGGATGGCGTTTTACGTT 59.735 47.619 0.00 0.00 44.73 3.99
758 800 2.596553 TTTTGACCGGCTCGTGTGGT 62.597 55.000 0.00 3.67 39.12 4.16
842 884 4.980805 GGCGTGCCGAGTTGGTGA 62.981 66.667 0.00 0.00 41.21 4.02
846 888 1.883084 GATAGGGCGTGCCGAGTTG 60.883 63.158 4.53 0.00 36.85 3.16
847 889 2.355986 TGATAGGGCGTGCCGAGTT 61.356 57.895 4.53 0.00 36.85 3.01
848 890 2.758327 TGATAGGGCGTGCCGAGT 60.758 61.111 4.53 0.00 36.85 4.18
855 897 1.921346 TGGGTTGGTGATAGGGCGT 60.921 57.895 0.00 0.00 0.00 5.68
1206 1278 2.590575 AGGTTGGTGAACGTGCCG 60.591 61.111 0.00 0.00 32.28 5.69
1212 1284 1.239347 GCTCCTTGAGGTTGGTGAAC 58.761 55.000 0.00 0.00 36.34 3.18
1301 1374 3.234349 CCATGAGGATGGCCGTCT 58.766 61.111 24.11 10.54 43.00 4.18
1355 1431 6.610020 ACATGGCCACTAGTAAGACAATACTA 59.390 38.462 8.16 0.00 37.34 1.82
1356 1432 5.425539 ACATGGCCACTAGTAAGACAATACT 59.574 40.000 8.16 0.00 39.41 2.12
1357 1433 5.671493 ACATGGCCACTAGTAAGACAATAC 58.329 41.667 8.16 0.00 0.00 1.89
1359 1435 4.844349 ACATGGCCACTAGTAAGACAAT 57.156 40.909 8.16 0.00 0.00 2.71
1360 1436 4.634012 AACATGGCCACTAGTAAGACAA 57.366 40.909 8.16 0.00 0.00 3.18
1362 1438 5.731591 AGTAAACATGGCCACTAGTAAGAC 58.268 41.667 8.16 6.57 0.00 3.01
1364 1440 7.822822 AGTAAAGTAAACATGGCCACTAGTAAG 59.177 37.037 8.16 0.00 0.00 2.34
1365 1441 7.682628 AGTAAAGTAAACATGGCCACTAGTAA 58.317 34.615 8.16 0.00 0.00 2.24
1366 1442 7.179694 AGAGTAAAGTAAACATGGCCACTAGTA 59.820 37.037 8.16 0.00 0.00 1.82
1367 1443 6.013639 AGAGTAAAGTAAACATGGCCACTAGT 60.014 38.462 8.16 4.12 0.00 2.57
1368 1444 6.313905 CAGAGTAAAGTAAACATGGCCACTAG 59.686 42.308 8.16 3.32 0.00 2.57
1403 1479 7.921214 CGAACACATGGATAGATAACTACAAGT 59.079 37.037 0.00 0.00 0.00 3.16
1404 1480 7.921214 ACGAACACATGGATAGATAACTACAAG 59.079 37.037 0.00 0.00 0.00 3.16
1405 1481 7.778083 ACGAACACATGGATAGATAACTACAA 58.222 34.615 0.00 0.00 0.00 2.41
1406 1482 7.284716 AGACGAACACATGGATAGATAACTACA 59.715 37.037 0.00 0.00 0.00 2.74
1407 1483 7.591795 CAGACGAACACATGGATAGATAACTAC 59.408 40.741 0.00 0.00 0.00 2.73
1408 1484 7.284716 ACAGACGAACACATGGATAGATAACTA 59.715 37.037 0.00 0.00 0.00 2.24
1409 1485 6.096987 ACAGACGAACACATGGATAGATAACT 59.903 38.462 0.00 0.00 0.00 2.24
1410 1486 6.199154 CACAGACGAACACATGGATAGATAAC 59.801 42.308 0.00 0.00 0.00 1.89
1411 1487 6.273071 CACAGACGAACACATGGATAGATAA 58.727 40.000 0.00 0.00 0.00 1.75
1412 1488 5.736207 GCACAGACGAACACATGGATAGATA 60.736 44.000 0.00 0.00 0.00 1.98
1413 1489 4.686972 CACAGACGAACACATGGATAGAT 58.313 43.478 0.00 0.00 0.00 1.98
1414 1490 3.676049 GCACAGACGAACACATGGATAGA 60.676 47.826 0.00 0.00 0.00 1.98
1415 1491 2.604914 GCACAGACGAACACATGGATAG 59.395 50.000 0.00 0.00 0.00 2.08
1458 1543 8.432805 CCACATCTGAGGGATTTATTTAGTACT 58.567 37.037 0.00 0.00 31.27 2.73
1484 1569 6.866770 TCGCAGAGCAGGTAACATATAAATAC 59.133 38.462 0.00 0.00 41.41 1.89
1513 1606 5.745227 ACCTAGTTATGGTGGAAACAGATG 58.255 41.667 0.00 0.00 44.46 2.90
1535 1659 5.288804 ACACAAAAATGATGGCAACTGTAC 58.711 37.500 0.00 0.00 37.61 2.90
1645 1769 1.148310 CACACGCATCGAGAACCTTT 58.852 50.000 0.00 0.00 0.00 3.11
1761 1887 9.710900 CATACAGAATACAATAGCACAATCCTA 57.289 33.333 0.00 0.00 0.00 2.94
1766 1892 9.313118 CACTACATACAGAATACAATAGCACAA 57.687 33.333 0.00 0.00 0.00 3.33
2127 2254 4.789807 AGATATGCAGGAGAAACAATGCT 58.210 39.130 0.00 0.00 39.42 3.79
2181 2317 5.160641 TGCAACTTTTTAATCCTCAATCGC 58.839 37.500 0.00 0.00 0.00 4.58
2224 2368 7.807433 TGTACGTCGTGTAAAATATAGTTGTGT 59.193 33.333 8.47 0.00 34.07 3.72
2251 2410 6.548622 AGAAAGTGCCACATTGCTAATATCAT 59.451 34.615 0.00 0.00 0.00 2.45
2314 2473 8.742777 CCTGCAGCATGGTAATAAATATGTAAT 58.257 33.333 8.66 0.00 35.86 1.89
2425 2585 5.702670 ACACGATAGATGATAATGCCAAAGG 59.297 40.000 0.00 0.00 41.38 3.11
2446 2606 9.322773 GGAAACAGTTATAAAGGTAGGATACAC 57.677 37.037 0.00 0.00 45.43 2.90
2492 2659 7.068593 TGAGAATATTCAACCCTAATTGGCTTG 59.931 37.037 17.56 0.00 0.00 4.01
2495 2662 6.959639 TGAGAATATTCAACCCTAATTGGC 57.040 37.500 17.56 0.00 0.00 4.52
2570 2739 6.320418 AGCATAACTCATCATTTTGCATCAGA 59.680 34.615 0.00 0.00 36.73 3.27
2668 2866 4.980434 CACAAACAAAAGAGGCATCTTCAG 59.020 41.667 14.91 12.10 45.25 3.02
2845 3047 5.089970 AGGGAGCAAAAATAATTTGGAGC 57.910 39.130 3.41 0.00 0.00 4.70
2877 3079 9.149225 GATAAGGACAATGTGCTATATGAGAAG 57.851 37.037 8.06 0.00 31.83 2.85
2895 3097 4.688021 ACTTTCTGATGAGCGATAAGGAC 58.312 43.478 0.00 0.00 0.00 3.85
2907 3109 5.591472 TGGCCATTATGAGAACTTTCTGATG 59.409 40.000 0.00 0.00 37.73 3.07
3046 3381 3.777106 AAAAGCATGACAGGACAGAGA 57.223 42.857 0.00 0.00 0.00 3.10
3047 3382 4.070716 AGAAAAAGCATGACAGGACAGAG 58.929 43.478 0.00 0.00 0.00 3.35
3167 3513 4.318121 GCGTCTCAGTCTTTGTAAACAGTG 60.318 45.833 0.00 0.00 0.00 3.66
3209 3557 5.070180 TGATTCACAAAGCCAATTGGAGAAA 59.930 36.000 29.02 11.21 34.45 2.52
3217 3565 8.723311 CATTTGTTTATGATTCACAAAGCCAAT 58.277 29.630 7.59 1.09 42.21 3.16
3286 3671 2.811431 TGGTTATGCTCAAACAGGTTCG 59.189 45.455 0.00 0.00 0.00 3.95
3320 3713 4.778534 TTACTGCAACTTAGCGAGTAGT 57.221 40.909 0.00 0.00 37.72 2.73
3326 3719 5.810525 AGCAAATATTACTGCAACTTAGCG 58.189 37.500 13.26 0.00 41.17 4.26
3518 4274 5.102953 AGCAGACCATGTTCTATAAGCAA 57.897 39.130 0.00 0.00 0.00 3.91
3533 4289 9.209175 CTGTGACCTATAATAAATAAGCAGACC 57.791 37.037 0.00 0.00 0.00 3.85
3705 4465 8.629158 TGCAATTTTTGTAGACAATAGTGAAGT 58.371 29.630 0.00 0.00 35.55 3.01
3765 4525 0.391130 GTCTCACCATTGCGCTACCA 60.391 55.000 9.73 0.00 0.00 3.25
3881 4645 3.020984 GCGATTTCCCCCACAAAGATAA 58.979 45.455 0.00 0.00 0.00 1.75
3883 4647 1.272425 TGCGATTTCCCCCACAAAGAT 60.272 47.619 0.00 0.00 0.00 2.40
3885 4649 1.135024 CATGCGATTTCCCCCACAAAG 60.135 52.381 0.00 0.00 0.00 2.77
4117 4890 9.346725 GTGAGGAATGCTGTTTAGAAAAATAAG 57.653 33.333 0.00 0.00 0.00 1.73
4196 4975 6.665992 TCCTCCATTTATTCACGCTATACT 57.334 37.500 0.00 0.00 0.00 2.12
4229 5008 0.664224 TATGATGCAAGCATGGCGTG 59.336 50.000 12.94 1.31 46.13 5.34
4236 5015 6.147656 CGGAATGTAATAGTATGATGCAAGCA 59.852 38.462 0.00 0.00 35.55 3.91
4455 5308 7.410120 AATCTTCCTGGCTATTTAACCAAAG 57.590 36.000 0.00 0.00 34.96 2.77
4487 5340 7.597288 AAAGCCCAAGTGATTTTACTAACTT 57.403 32.000 0.00 0.00 33.20 2.66
4518 5371 2.978156 AAGCCCAAGTGATTTCCTCA 57.022 45.000 0.00 0.00 0.00 3.86
4519 5372 3.440522 GTGTAAGCCCAAGTGATTTCCTC 59.559 47.826 0.00 0.00 0.00 3.71
4520 5373 3.074538 AGTGTAAGCCCAAGTGATTTCCT 59.925 43.478 0.00 0.00 0.00 3.36
4521 5374 3.421844 AGTGTAAGCCCAAGTGATTTCC 58.578 45.455 0.00 0.00 0.00 3.13
4522 5375 3.440522 GGAGTGTAAGCCCAAGTGATTTC 59.559 47.826 0.00 0.00 0.00 2.17
4523 5376 3.074538 AGGAGTGTAAGCCCAAGTGATTT 59.925 43.478 0.00 0.00 0.00 2.17
4524 5377 2.644798 AGGAGTGTAAGCCCAAGTGATT 59.355 45.455 0.00 0.00 0.00 2.57
4525 5378 2.026822 CAGGAGTGTAAGCCCAAGTGAT 60.027 50.000 0.00 0.00 0.00 3.06
4526 5379 1.347707 CAGGAGTGTAAGCCCAAGTGA 59.652 52.381 0.00 0.00 0.00 3.41
4527 5380 1.072331 ACAGGAGTGTAAGCCCAAGTG 59.928 52.381 0.00 0.00 34.05 3.16
4528 5381 1.435256 ACAGGAGTGTAAGCCCAAGT 58.565 50.000 0.00 0.00 34.05 3.16
4529 5382 3.695830 TTACAGGAGTGTAAGCCCAAG 57.304 47.619 0.00 0.00 42.99 3.61
4536 5389 8.192110 GGTTGTTTGATTTTTACAGGAGTGTAA 58.808 33.333 0.00 0.00 45.57 2.41
4714 5578 1.904287 TCTCAATTTTGGGGACACGG 58.096 50.000 0.00 0.00 42.67 4.94
4769 5633 1.871080 ACGCTTGACTTCAGACCTTG 58.129 50.000 0.00 0.00 0.00 3.61
4830 5694 6.820335 TGAAGAGTGTTTGAATCTTGAGAGA 58.180 36.000 0.00 0.00 33.53 3.10
4831 5695 7.011763 TGTTGAAGAGTGTTTGAATCTTGAGAG 59.988 37.037 0.00 0.00 33.53 3.20
4832 5696 6.823182 TGTTGAAGAGTGTTTGAATCTTGAGA 59.177 34.615 0.00 0.00 33.53 3.27
4846 5710 4.691860 CAGCCCTTTATGTTGAAGAGTG 57.308 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.