Multiple sequence alignment - TraesCS1A01G427700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G427700 chr1A 100.000 3588 0 0 1 3588 581878170 581881757 0.000000e+00 6626.0
1 TraesCS1A01G427700 chr1A 94.233 815 36 7 480 1290 581914336 581915143 0.000000e+00 1234.0
2 TraesCS1A01G427700 chr1A 96.875 480 10 3 1 476 581913896 581914374 0.000000e+00 798.0
3 TraesCS1A01G427700 chr1A 91.975 486 33 4 806 1290 581957247 581957727 0.000000e+00 676.0
4 TraesCS1A01G427700 chr1A 92.857 280 14 2 3312 3588 497586241 497586517 5.580000e-108 401.0
5 TraesCS1A01G427700 chr1A 94.924 197 10 0 3103 3299 581910531 581910727 3.480000e-80 309.0
6 TraesCS1A01G427700 chr1A 81.132 371 51 15 1931 2287 581959926 581960291 2.730000e-71 279.0
7 TraesCS1A01G427700 chr1A 97.872 47 1 0 2284 2330 582218796 582218842 8.260000e-12 82.4
8 TraesCS1A01G427700 chr1D 96.991 2393 61 7 1 2388 484737122 484739508 0.000000e+00 4010.0
9 TraesCS1A01G427700 chr1D 92.308 1313 71 13 1 1290 484794176 484795481 0.000000e+00 1838.0
10 TraesCS1A01G427700 chr1D 94.625 707 28 6 1 698 484868913 484869618 0.000000e+00 1086.0
11 TraesCS1A01G427700 chr1D 83.705 1166 131 29 548 1685 484563363 484564497 0.000000e+00 1046.0
12 TraesCS1A01G427700 chr1D 93.097 536 22 7 2393 2916 484739593 484740125 0.000000e+00 771.0
13 TraesCS1A01G427700 chr1D 88.742 604 64 3 1437 2039 484565538 484566138 0.000000e+00 736.0
14 TraesCS1A01G427700 chr1D 93.571 280 12 2 3312 3588 484740556 484740832 2.580000e-111 412.0
15 TraesCS1A01G427700 chr1D 90.941 287 18 3 3014 3299 484791468 484791747 2.610000e-101 379.0
16 TraesCS1A01G427700 chr1D 95.853 217 9 0 2174 2390 484566258 484566474 5.700000e-93 351.0
17 TraesCS1A01G427700 chr1D 83.492 315 41 4 1375 1689 484564549 484564852 2.110000e-72 283.0
18 TraesCS1A01G427700 chr1D 83.624 287 36 4 1404 1690 484565054 484565329 3.550000e-65 259.0
19 TraesCS1A01G427700 chr1D 89.151 212 12 5 2393 2593 484566556 484566767 1.650000e-63 254.0
20 TraesCS1A01G427700 chr1D 81.107 307 44 10 1988 2287 484870999 484871298 2.150000e-57 233.0
21 TraesCS1A01G427700 chr1D 80.456 307 42 12 1988 2287 466605136 466605431 6.030000e-53 219.0
22 TraesCS1A01G427700 chr1D 94.118 136 8 0 3164 3299 466600374 466600509 1.310000e-49 207.0
23 TraesCS1A01G427700 chr1D 82.353 153 18 8 2293 2440 484871370 484871518 1.350000e-24 124.0
24 TraesCS1A01G427700 chr1D 97.872 47 1 0 2284 2330 485020494 485020540 8.260000e-12 82.4
25 TraesCS1A01G427700 chr1D 100.000 32 0 0 2919 2950 484740144 484740175 3.870000e-05 60.2
26 TraesCS1A01G427700 chr1B 94.914 1337 59 6 959 2287 675228607 675227272 0.000000e+00 2084.0
27 TraesCS1A01G427700 chr1B 92.107 1305 80 13 1 1290 674892275 674893571 0.000000e+00 1818.0
28 TraesCS1A01G427700 chr1B 91.385 1300 50 29 1 1290 675223585 675222338 0.000000e+00 1724.0
29 TraesCS1A01G427700 chr1B 96.307 704 20 3 1 698 674818431 674819134 0.000000e+00 1151.0
30 TraesCS1A01G427700 chr1B 94.076 709 30 7 1 698 674932337 674933044 0.000000e+00 1066.0
31 TraesCS1A01G427700 chr1B 94.061 522 25 4 1 517 646684632 646685152 0.000000e+00 787.0
32 TraesCS1A01G427700 chr1B 91.461 445 29 2 712 1156 646685159 646685594 1.430000e-168 603.0
33 TraesCS1A01G427700 chr1B 88.791 455 40 5 1600 2053 674820616 674821060 6.770000e-152 547.0
34 TraesCS1A01G427700 chr1B 94.785 326 15 2 1 324 675229044 675228719 1.150000e-139 507.0
35 TraesCS1A01G427700 chr1B 89.931 288 16 5 2277 2552 675227210 675226924 3.410000e-95 359.0
36 TraesCS1A01G427700 chr1B 91.964 224 9 3 2174 2388 674821196 674821419 4.500000e-79 305.0
37 TraesCS1A01G427700 chr1B 89.958 239 13 3 3020 3254 675226737 675226506 7.530000e-77 298.0
38 TraesCS1A01G427700 chr1B 90.826 218 15 3 484 698 646774581 646774796 1.630000e-73 287.0
39 TraesCS1A01G427700 chr1B 92.143 140 10 1 1152 1290 646685715 646685854 2.830000e-46 196.0
40 TraesCS1A01G427700 chr1B 83.929 224 13 8 2393 2593 674821507 674821730 3.660000e-45 193.0
41 TraesCS1A01G427700 chr1B 92.105 114 9 0 2174 2287 674894932 674895045 1.030000e-35 161.0
42 TraesCS1A01G427700 chr1B 92.105 114 9 0 2174 2287 675220965 675220852 1.030000e-35 161.0
43 TraesCS1A01G427700 chr1B 91.453 117 8 1 817 933 675228717 675228603 3.710000e-35 159.0
44 TraesCS1A01G427700 chr1B 75.676 370 38 31 2293 2616 674934811 674935174 1.740000e-28 137.0
45 TraesCS1A01G427700 chr1B 84.000 125 11 5 2293 2412 646776559 646776679 1.050000e-20 111.0
46 TraesCS1A01G427700 chr2A 93.091 275 13 2 3317 3588 161938438 161938167 7.220000e-107 398.0
47 TraesCS1A01G427700 chr2A 90.338 207 14 3 3312 3515 193783209 193783006 2.120000e-67 267.0
48 TraesCS1A01G427700 chr2A 96.000 75 3 0 3514 3588 193779080 193779006 4.860000e-24 122.0
49 TraesCS1A01G427700 chr5A 92.500 280 15 2 3312 3588 3879759 3880035 2.600000e-106 396.0
50 TraesCS1A01G427700 chr2D 92.143 280 16 2 3312 3588 630025448 630025724 1.210000e-104 390.0
51 TraesCS1A01G427700 chr3A 91.429 280 18 2 3312 3588 111807386 111807662 2.610000e-101 379.0
52 TraesCS1A01G427700 chr7A 91.144 271 18 2 3312 3579 543443876 543443609 2.630000e-96 363.0
53 TraesCS1A01G427700 chrUn 95.722 187 8 0 3402 3588 354808014 354808200 5.820000e-78 302.0
54 TraesCS1A01G427700 chr5B 89.503 181 13 2 3312 3489 705491803 705491626 1.300000e-54 224.0
55 TraesCS1A01G427700 chr6B 88.112 143 8 6 511 649 30354199 30354336 1.030000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G427700 chr1A 581878170 581881757 3587 False 6626.000000 6626 100.000000 1 3588 1 chr1A.!!$F2 3587
1 TraesCS1A01G427700 chr1A 581910531 581915143 4612 False 780.333333 1234 95.344000 1 3299 3 chr1A.!!$F4 3298
2 TraesCS1A01G427700 chr1A 581957247 581960291 3044 False 477.500000 676 86.553500 806 2287 2 chr1A.!!$F5 1481
3 TraesCS1A01G427700 chr1D 484737122 484740832 3710 False 1313.300000 4010 95.914750 1 3588 4 chr1D.!!$F5 3587
4 TraesCS1A01G427700 chr1D 484791468 484795481 4013 False 1108.500000 1838 91.624500 1 3299 2 chr1D.!!$F6 3298
5 TraesCS1A01G427700 chr1D 484563363 484566767 3404 False 488.166667 1046 87.427833 548 2593 6 chr1D.!!$F4 2045
6 TraesCS1A01G427700 chr1D 484868913 484871518 2605 False 481.000000 1086 86.028333 1 2440 3 chr1D.!!$F7 2439
7 TraesCS1A01G427700 chr1B 674892275 674895045 2770 False 989.500000 1818 92.106000 1 2287 2 chr1B.!!$F4 2286
8 TraesCS1A01G427700 chr1B 675220852 675229044 8192 True 756.000000 2084 92.075857 1 3254 7 chr1B.!!$R1 3253
9 TraesCS1A01G427700 chr1B 674932337 674935174 2837 False 601.500000 1066 84.876000 1 2616 2 chr1B.!!$F5 2615
10 TraesCS1A01G427700 chr1B 674818431 674821730 3299 False 549.000000 1151 90.247750 1 2593 4 chr1B.!!$F3 2592
11 TraesCS1A01G427700 chr1B 646684632 646685854 1222 False 528.666667 787 92.555000 1 1290 3 chr1B.!!$F1 1289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 3740 2.012673 GCTGCCTAGACAAGATTGTGG 58.987 52.381 2.31 0.0 42.43 4.17 F
822 9851 5.010282 ACCTGACTTGTTTTGAGTGAGTTT 58.990 37.500 0.00 0.0 27.94 2.66 F
2024 14387 2.029020 TCTGCTGTTCTGCGTGTAGAAT 60.029 45.455 3.74 0.0 38.79 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 12528 0.809636 TCAACCAGTGTGTCTGTGCG 60.810 55.0 0.00 0.00 42.19 5.34 R
2206 14597 0.469705 TCACTGCACAAAAGGGGCAT 60.470 50.0 0.00 0.00 36.87 4.40 R
3272 15958 0.107017 TCCCCGTAGAGTCGTAAGGG 60.107 60.0 11.22 11.22 40.45 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 3740 2.012673 GCTGCCTAGACAAGATTGTGG 58.987 52.381 2.31 0.00 42.43 4.17
822 9851 5.010282 ACCTGACTTGTTTTGAGTGAGTTT 58.990 37.500 0.00 0.00 27.94 2.66
906 9935 7.573710 TGGAATTAACTTACTGCATGGAGTAT 58.426 34.615 25.37 14.63 0.00 2.12
907 9936 8.710239 TGGAATTAACTTACTGCATGGAGTATA 58.290 33.333 25.37 13.68 0.00 1.47
1377 12528 3.900941 CACCAAATGCCTGAACTTGTAC 58.099 45.455 0.00 0.00 0.00 2.90
1417 12568 8.517878 GGTTGAATTATATGAACCAGATCCATG 58.482 37.037 0.00 0.00 38.21 3.66
1957 14310 4.633565 GCAACCACATTCTCCTCTCTTTAG 59.366 45.833 0.00 0.00 0.00 1.85
1971 14325 4.480115 TCTCTTTAGGTGTGACTCCTTGA 58.520 43.478 11.85 7.37 36.60 3.02
2024 14387 2.029020 TCTGCTGTTCTGCGTGTAGAAT 60.029 45.455 3.74 0.00 38.79 2.40
2179 14570 9.021807 AGTGTAGTGTATGTAGTATGTCTGTTT 57.978 33.333 0.00 0.00 0.00 2.83
2206 14597 4.080751 GGTAAGCAACTAACCCTGGTGATA 60.081 45.833 0.00 0.00 0.00 2.15
2378 14893 2.433604 GGGCTCTTGATCAGACTGATGA 59.566 50.000 22.64 11.84 37.20 2.92
2430 15038 0.179004 TTGTTGCCCTCATCGGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
2514 15159 4.030216 AGGAATTTTCTGGTGGTGTTTGT 58.970 39.130 0.00 0.00 0.00 2.83
2563 15232 1.974543 CCCTGGTGGCATTGTTTCC 59.025 57.895 0.00 0.00 0.00 3.13
2595 15264 7.254252 GCGTTACATATTCTCATGATATGCTCC 60.254 40.741 12.66 3.01 32.96 4.70
2637 15307 5.556355 TCTTGCAGTCTGCTTGATTTATG 57.444 39.130 24.76 6.08 45.31 1.90
2652 15322 7.254017 GCTTGATTTATGCTCTGCTTGAAAATC 60.254 37.037 0.00 0.00 34.18 2.17
2744 15414 2.908688 TGTAGCACAAGAGCTTGACA 57.091 45.000 16.47 7.63 43.70 3.58
2785 15455 1.673665 GCACCAACTCAGAGGCCAG 60.674 63.158 5.01 0.00 0.00 4.85
2813 15483 2.522923 ATCGGATGCTCTCGCCCT 60.523 61.111 0.00 0.00 34.43 5.19
2814 15484 2.569354 ATCGGATGCTCTCGCCCTC 61.569 63.158 0.00 0.00 34.43 4.30
2815 15485 2.992817 ATCGGATGCTCTCGCCCTCT 62.993 60.000 0.00 0.00 34.43 3.69
2857 15527 3.152341 CTGATTCAGTTCTTTGCCCACT 58.848 45.455 5.46 0.00 0.00 4.00
2887 15557 3.535561 ACAGTTGGACAGTCTTCAGTTG 58.464 45.455 0.00 0.00 0.00 3.16
2891 15561 3.364889 TGGACAGTCTTCAGTTGTACG 57.635 47.619 0.00 0.00 0.00 3.67
2908 15578 5.386958 TGTACGAAGCTCAACTTATGACT 57.613 39.130 0.00 0.00 39.29 3.41
2916 15586 4.469227 AGCTCAACTTATGACTCCATCACT 59.531 41.667 0.00 0.00 41.24 3.41
2917 15587 4.569966 GCTCAACTTATGACTCCATCACTG 59.430 45.833 0.00 0.00 41.24 3.66
2950 15636 6.299805 ACCAAGCATCTAACTCATCAACTA 57.700 37.500 0.00 0.00 0.00 2.24
2951 15637 6.711277 ACCAAGCATCTAACTCATCAACTAA 58.289 36.000 0.00 0.00 0.00 2.24
2952 15638 6.820656 ACCAAGCATCTAACTCATCAACTAAG 59.179 38.462 0.00 0.00 0.00 2.18
2953 15639 7.044181 CCAAGCATCTAACTCATCAACTAAGA 58.956 38.462 0.00 0.00 0.00 2.10
2954 15640 7.550551 CCAAGCATCTAACTCATCAACTAAGAA 59.449 37.037 0.00 0.00 0.00 2.52
2955 15641 8.939929 CAAGCATCTAACTCATCAACTAAGAAA 58.060 33.333 0.00 0.00 0.00 2.52
2964 15650 7.560368 ACTCATCAACTAAGAAATACAGAGGG 58.440 38.462 0.00 0.00 0.00 4.30
2965 15651 7.400339 ACTCATCAACTAAGAAATACAGAGGGA 59.600 37.037 0.00 0.00 0.00 4.20
2966 15652 8.146053 TCATCAACTAAGAAATACAGAGGGAA 57.854 34.615 0.00 0.00 0.00 3.97
2967 15653 8.772250 TCATCAACTAAGAAATACAGAGGGAAT 58.228 33.333 0.00 0.00 0.00 3.01
2968 15654 9.050601 CATCAACTAAGAAATACAGAGGGAATC 57.949 37.037 0.00 0.00 0.00 2.52
2969 15655 7.565680 TCAACTAAGAAATACAGAGGGAATCC 58.434 38.462 0.00 0.00 0.00 3.01
2970 15656 7.182026 TCAACTAAGAAATACAGAGGGAATCCA 59.818 37.037 0.09 0.00 34.83 3.41
2971 15657 7.510675 ACTAAGAAATACAGAGGGAATCCAA 57.489 36.000 0.09 0.00 34.83 3.53
2972 15658 7.339482 ACTAAGAAATACAGAGGGAATCCAAC 58.661 38.462 0.09 0.00 34.83 3.77
2973 15659 5.779241 AGAAATACAGAGGGAATCCAACA 57.221 39.130 0.09 0.00 34.83 3.33
2974 15660 5.501156 AGAAATACAGAGGGAATCCAACAC 58.499 41.667 0.09 0.00 34.83 3.32
2975 15661 4.927267 AATACAGAGGGAATCCAACACA 57.073 40.909 0.09 0.00 34.83 3.72
2976 15662 5.456921 AATACAGAGGGAATCCAACACAT 57.543 39.130 0.09 0.00 34.83 3.21
2977 15663 3.077484 ACAGAGGGAATCCAACACATG 57.923 47.619 0.09 0.00 34.83 3.21
2978 15664 1.747355 CAGAGGGAATCCAACACATGC 59.253 52.381 0.09 0.00 34.83 4.06
2979 15665 1.355381 AGAGGGAATCCAACACATGCA 59.645 47.619 0.09 0.00 34.83 3.96
2980 15666 2.024655 AGAGGGAATCCAACACATGCAT 60.025 45.455 0.09 0.00 34.83 3.96
2981 15667 2.360165 GAGGGAATCCAACACATGCATC 59.640 50.000 0.09 0.00 34.83 3.91
2982 15668 1.410153 GGGAATCCAACACATGCATCC 59.590 52.381 0.09 0.00 0.00 3.51
2983 15669 2.101783 GGAATCCAACACATGCATCCA 58.898 47.619 0.00 0.00 0.00 3.41
2984 15670 2.159198 GGAATCCAACACATGCATCCAC 60.159 50.000 0.00 0.00 0.00 4.02
2985 15671 1.097232 ATCCAACACATGCATCCACG 58.903 50.000 0.00 0.00 0.00 4.94
2986 15672 0.250684 TCCAACACATGCATCCACGT 60.251 50.000 0.00 0.00 0.00 4.49
2987 15673 0.597568 CCAACACATGCATCCACGTT 59.402 50.000 0.00 0.00 0.00 3.99
2988 15674 1.666599 CCAACACATGCATCCACGTTG 60.667 52.381 15.25 15.25 34.84 4.10
2989 15675 1.266446 CAACACATGCATCCACGTTGA 59.734 47.619 16.44 0.00 36.67 3.18
2990 15676 1.825090 ACACATGCATCCACGTTGAT 58.175 45.000 0.00 0.00 0.00 2.57
2991 15677 1.739466 ACACATGCATCCACGTTGATC 59.261 47.619 0.00 0.00 0.00 2.92
2992 15678 1.064505 CACATGCATCCACGTTGATCC 59.935 52.381 0.00 0.00 0.00 3.36
2993 15679 1.065199 ACATGCATCCACGTTGATCCT 60.065 47.619 0.00 0.00 0.00 3.24
2994 15680 2.019249 CATGCATCCACGTTGATCCTT 58.981 47.619 0.00 0.00 0.00 3.36
2995 15681 1.737838 TGCATCCACGTTGATCCTTC 58.262 50.000 0.00 0.00 0.00 3.46
2996 15682 1.278985 TGCATCCACGTTGATCCTTCT 59.721 47.619 0.00 0.00 0.00 2.85
2997 15683 2.499693 TGCATCCACGTTGATCCTTCTA 59.500 45.455 0.00 0.00 0.00 2.10
2998 15684 2.866762 GCATCCACGTTGATCCTTCTAC 59.133 50.000 0.00 0.00 0.00 2.59
2999 15685 3.458189 CATCCACGTTGATCCTTCTACC 58.542 50.000 0.00 0.00 0.00 3.18
3000 15686 2.816411 TCCACGTTGATCCTTCTACCT 58.184 47.619 0.00 0.00 0.00 3.08
3001 15687 3.972133 TCCACGTTGATCCTTCTACCTA 58.028 45.455 0.00 0.00 0.00 3.08
3002 15688 3.698040 TCCACGTTGATCCTTCTACCTAC 59.302 47.826 0.00 0.00 0.00 3.18
3003 15689 3.181478 CCACGTTGATCCTTCTACCTACC 60.181 52.174 0.00 0.00 0.00 3.18
3004 15690 3.446161 CACGTTGATCCTTCTACCTACCA 59.554 47.826 0.00 0.00 0.00 3.25
3005 15691 4.081862 CACGTTGATCCTTCTACCTACCAA 60.082 45.833 0.00 0.00 0.00 3.67
3009 15695 6.571605 GTTGATCCTTCTACCTACCAACTAC 58.428 44.000 0.00 0.00 32.43 2.73
3010 15696 6.088541 TGATCCTTCTACCTACCAACTACT 57.911 41.667 0.00 0.00 0.00 2.57
3012 15698 6.958192 TGATCCTTCTACCTACCAACTACTTT 59.042 38.462 0.00 0.00 0.00 2.66
3017 15703 8.810041 CCTTCTACCTACCAACTACTTTTAAGA 58.190 37.037 0.00 0.00 0.00 2.10
3018 15704 9.857957 CTTCTACCTACCAACTACTTTTAAGAG 57.142 37.037 0.00 0.00 0.00 2.85
3019 15705 8.358582 TCTACCTACCAACTACTTTTAAGAGG 57.641 38.462 0.00 0.00 0.00 3.69
3026 15712 7.262772 ACCAACTACTTTTAAGAGGTTTTTGC 58.737 34.615 0.00 0.00 0.00 3.68
3029 15715 7.640597 ACTACTTTTAAGAGGTTTTTGCAGT 57.359 32.000 0.00 0.00 0.00 4.40
3034 15720 8.528643 ACTTTTAAGAGGTTTTTGCAGTTTACT 58.471 29.630 0.00 0.00 0.00 2.24
3035 15721 8.920509 TTTTAAGAGGTTTTTGCAGTTTACTC 57.079 30.769 0.00 0.00 0.00 2.59
3036 15722 7.633193 TTAAGAGGTTTTTGCAGTTTACTCA 57.367 32.000 10.88 0.00 0.00 3.41
3037 15723 5.500645 AGAGGTTTTTGCAGTTTACTCAC 57.499 39.130 10.88 0.00 0.00 3.51
3038 15724 4.947388 AGAGGTTTTTGCAGTTTACTCACA 59.053 37.500 10.88 0.00 0.00 3.58
3039 15725 5.417580 AGAGGTTTTTGCAGTTTACTCACAA 59.582 36.000 10.88 0.00 0.00 3.33
3040 15726 6.096846 AGAGGTTTTTGCAGTTTACTCACAAT 59.903 34.615 10.88 0.00 0.00 2.71
3042 15728 7.777095 AGGTTTTTGCAGTTTACTCACAATTA 58.223 30.769 0.00 0.00 0.00 1.40
3045 15731 9.296400 GTTTTTGCAGTTTACTCACAATTAGAA 57.704 29.630 0.00 0.00 0.00 2.10
3046 15732 9.862371 TTTTTGCAGTTTACTCACAATTAGAAA 57.138 25.926 0.00 0.00 0.00 2.52
3047 15733 8.850454 TTTGCAGTTTACTCACAATTAGAAAC 57.150 30.769 0.00 0.00 0.00 2.78
3048 15734 7.561021 TGCAGTTTACTCACAATTAGAAACA 57.439 32.000 0.00 0.00 30.89 2.83
3049 15735 7.639039 TGCAGTTTACTCACAATTAGAAACAG 58.361 34.615 0.00 0.00 30.89 3.16
3050 15736 7.497579 TGCAGTTTACTCACAATTAGAAACAGA 59.502 33.333 0.00 0.00 30.89 3.41
3051 15737 8.012241 GCAGTTTACTCACAATTAGAAACAGAG 58.988 37.037 0.00 0.00 30.89 3.35
3053 15739 9.614792 AGTTTACTCACAATTAGAAACAGAGTT 57.385 29.630 0.00 0.00 36.40 3.01
3088 15774 4.801330 TCTGAAAGAATTCTGCCTACGA 57.199 40.909 9.17 0.00 42.31 3.43
3089 15775 5.147330 TCTGAAAGAATTCTGCCTACGAA 57.853 39.130 9.17 0.00 42.31 3.85
3090 15776 4.929808 TCTGAAAGAATTCTGCCTACGAAC 59.070 41.667 9.17 0.00 42.31 3.95
3091 15777 4.894784 TGAAAGAATTCTGCCTACGAACT 58.105 39.130 9.17 0.00 36.48 3.01
3092 15778 6.032956 TGAAAGAATTCTGCCTACGAACTA 57.967 37.500 9.17 0.00 36.48 2.24
3093 15779 5.867716 TGAAAGAATTCTGCCTACGAACTAC 59.132 40.000 9.17 0.00 36.48 2.73
3095 15781 5.251601 AGAATTCTGCCTACGAACTACTC 57.748 43.478 7.30 0.00 0.00 2.59
3096 15782 4.098196 AGAATTCTGCCTACGAACTACTCC 59.902 45.833 7.30 0.00 0.00 3.85
3098 15784 2.089980 TCTGCCTACGAACTACTCCAC 58.910 52.381 0.00 0.00 0.00 4.02
3099 15785 1.816835 CTGCCTACGAACTACTCCACA 59.183 52.381 0.00 0.00 0.00 4.17
3100 15786 2.230508 CTGCCTACGAACTACTCCACAA 59.769 50.000 0.00 0.00 0.00 3.33
3101 15787 2.829720 TGCCTACGAACTACTCCACAAT 59.170 45.455 0.00 0.00 0.00 2.71
3102 15788 3.187700 GCCTACGAACTACTCCACAATG 58.812 50.000 0.00 0.00 0.00 2.82
3103 15789 3.187700 CCTACGAACTACTCCACAATGC 58.812 50.000 0.00 0.00 0.00 3.56
3104 15790 2.831685 ACGAACTACTCCACAATGCA 57.168 45.000 0.00 0.00 0.00 3.96
3105 15791 3.120321 ACGAACTACTCCACAATGCAA 57.880 42.857 0.00 0.00 0.00 4.08
3106 15792 3.067106 ACGAACTACTCCACAATGCAAG 58.933 45.455 0.00 0.00 0.00 4.01
3107 15793 2.416547 CGAACTACTCCACAATGCAAGG 59.583 50.000 0.00 0.00 0.00 3.61
3108 15794 3.674997 GAACTACTCCACAATGCAAGGA 58.325 45.455 0.00 0.00 0.00 3.36
3113 15799 3.499338 ACTCCACAATGCAAGGATTCAA 58.501 40.909 0.00 0.00 0.00 2.69
3114 15800 3.508793 ACTCCACAATGCAAGGATTCAAG 59.491 43.478 0.00 0.00 0.00 3.02
3115 15801 2.231964 TCCACAATGCAAGGATTCAAGC 59.768 45.455 0.00 0.00 0.00 4.01
3116 15802 2.028839 CCACAATGCAAGGATTCAAGCA 60.029 45.455 0.00 0.00 41.73 3.91
3118 15804 3.863424 CACAATGCAAGGATTCAAGCATC 59.137 43.478 3.92 0.00 46.10 3.91
3120 15806 4.020928 ACAATGCAAGGATTCAAGCATCAA 60.021 37.500 3.92 0.00 46.10 2.57
3121 15807 4.811969 ATGCAAGGATTCAAGCATCAAA 57.188 36.364 0.00 0.00 43.67 2.69
3122 15808 3.916761 TGCAAGGATTCAAGCATCAAAC 58.083 40.909 0.00 0.00 31.05 2.93
3123 15809 3.321396 TGCAAGGATTCAAGCATCAAACA 59.679 39.130 0.00 0.00 31.05 2.83
3124 15810 3.676646 GCAAGGATTCAAGCATCAAACAC 59.323 43.478 0.00 0.00 0.00 3.32
3125 15811 3.837213 AGGATTCAAGCATCAAACACG 57.163 42.857 0.00 0.00 0.00 4.49
3129 15815 4.095483 GGATTCAAGCATCAAACACGAGAT 59.905 41.667 0.00 0.00 0.00 2.75
3130 15816 4.408993 TTCAAGCATCAAACACGAGATG 57.591 40.909 0.00 0.00 43.42 2.90
3138 15824 6.266203 CATCAAACACGAGATGCTTACTAG 57.734 41.667 0.00 0.00 35.69 2.57
3139 15825 5.638596 TCAAACACGAGATGCTTACTAGA 57.361 39.130 0.00 0.00 0.00 2.43
3141 15827 6.266323 TCAAACACGAGATGCTTACTAGATC 58.734 40.000 0.00 0.00 0.00 2.75
3144 15830 6.067263 ACACGAGATGCTTACTAGATCTTC 57.933 41.667 0.00 0.00 0.00 2.87
3145 15831 5.825679 ACACGAGATGCTTACTAGATCTTCT 59.174 40.000 0.00 0.00 0.00 2.85
3160 15846 8.927675 CTAGATCTTCTAGGCTACCTTTTCTA 57.072 38.462 0.00 0.00 42.05 2.10
3161 15847 7.833285 AGATCTTCTAGGCTACCTTTTCTAG 57.167 40.000 0.00 0.00 34.61 2.43
3162 15848 7.359056 AGATCTTCTAGGCTACCTTTTCTAGT 58.641 38.462 0.00 0.00 34.61 2.57
3163 15849 7.504574 AGATCTTCTAGGCTACCTTTTCTAGTC 59.495 40.741 0.00 0.00 34.61 2.59
3165 15851 5.469210 TCTAGGCTACCTTTTCTAGTCCT 57.531 43.478 0.00 0.00 34.61 3.85
3166 15852 6.587560 TCTAGGCTACCTTTTCTAGTCCTA 57.412 41.667 0.00 0.00 34.61 2.94
3167 15853 6.603224 TCTAGGCTACCTTTTCTAGTCCTAG 58.397 44.000 0.00 0.00 38.24 3.02
3168 15854 3.962063 AGGCTACCTTTTCTAGTCCTAGC 59.038 47.826 0.00 0.00 33.32 3.42
3169 15855 3.069872 GGCTACCTTTTCTAGTCCTAGCC 59.930 52.174 0.00 0.00 38.41 3.93
3171 15857 4.161754 GCTACCTTTTCTAGTCCTAGCCAA 59.838 45.833 0.00 0.00 33.32 4.52
3172 15858 4.554960 ACCTTTTCTAGTCCTAGCCAAC 57.445 45.455 0.00 0.00 33.32 3.77
3173 15859 3.263681 ACCTTTTCTAGTCCTAGCCAACC 59.736 47.826 0.00 0.00 33.32 3.77
3174 15860 3.519913 CCTTTTCTAGTCCTAGCCAACCT 59.480 47.826 0.00 0.00 33.32 3.50
3175 15861 4.383226 CCTTTTCTAGTCCTAGCCAACCTC 60.383 50.000 0.00 0.00 33.32 3.85
3176 15862 2.456073 TCTAGTCCTAGCCAACCTCC 57.544 55.000 0.00 0.00 33.32 4.30
3178 15864 1.757699 CTAGTCCTAGCCAACCTCCAC 59.242 57.143 0.00 0.00 0.00 4.02
3179 15865 0.910088 AGTCCTAGCCAACCTCCACC 60.910 60.000 0.00 0.00 0.00 4.61
3180 15866 1.987855 TCCTAGCCAACCTCCACCG 60.988 63.158 0.00 0.00 0.00 4.94
3181 15867 1.987855 CCTAGCCAACCTCCACCGA 60.988 63.158 0.00 0.00 0.00 4.69
3182 15868 1.550130 CCTAGCCAACCTCCACCGAA 61.550 60.000 0.00 0.00 0.00 4.30
3183 15869 0.323629 CTAGCCAACCTCCACCGAAA 59.676 55.000 0.00 0.00 0.00 3.46
3184 15870 0.323629 TAGCCAACCTCCACCGAAAG 59.676 55.000 0.00 0.00 0.00 2.62
3185 15871 1.072505 GCCAACCTCCACCGAAAGA 59.927 57.895 0.00 0.00 0.00 2.52
3186 15872 1.235281 GCCAACCTCCACCGAAAGAC 61.235 60.000 0.00 0.00 0.00 3.01
3187 15873 0.605589 CCAACCTCCACCGAAAGACC 60.606 60.000 0.00 0.00 0.00 3.85
3188 15874 0.107831 CAACCTCCACCGAAAGACCA 59.892 55.000 0.00 0.00 0.00 4.02
3190 15876 0.613777 ACCTCCACCGAAAGACCATC 59.386 55.000 0.00 0.00 0.00 3.51
3191 15877 0.460284 CCTCCACCGAAAGACCATCG 60.460 60.000 0.00 0.00 39.92 3.84
3194 15880 1.076533 CCACCGAAAGACCATCGTCG 61.077 60.000 0.00 0.00 44.28 5.12
3195 15881 0.109458 CACCGAAAGACCATCGTCGA 60.109 55.000 0.00 0.00 44.28 4.20
3196 15882 0.109412 ACCGAAAGACCATCGTCGAC 60.109 55.000 5.18 5.18 44.28 4.20
3197 15883 0.170561 CCGAAAGACCATCGTCGACT 59.829 55.000 14.70 0.00 44.28 4.18
3200 15886 2.520979 GAAAGACCATCGTCGACTCAG 58.479 52.381 14.70 2.52 44.28 3.35
3201 15887 0.171455 AAGACCATCGTCGACTCAGC 59.829 55.000 14.70 0.00 44.28 4.26
3202 15888 0.678366 AGACCATCGTCGACTCAGCT 60.678 55.000 14.70 0.53 44.28 4.24
3203 15889 0.171455 GACCATCGTCGACTCAGCTT 59.829 55.000 14.70 0.00 0.00 3.74
3204 15890 0.171455 ACCATCGTCGACTCAGCTTC 59.829 55.000 14.70 0.00 0.00 3.86
3206 15892 1.202348 CCATCGTCGACTCAGCTTCAT 60.202 52.381 14.70 0.00 0.00 2.57
3207 15893 1.851053 CATCGTCGACTCAGCTTCATG 59.149 52.381 14.70 0.00 0.00 3.07
3209 15895 1.416813 CGTCGACTCAGCTTCATGCC 61.417 60.000 14.70 0.00 44.23 4.40
3211 15897 1.220206 CGACTCAGCTTCATGCCCT 59.780 57.895 0.00 0.00 44.23 5.19
3213 15899 0.809241 GACTCAGCTTCATGCCCTCG 60.809 60.000 0.00 0.00 44.23 4.63
3214 15900 2.124983 TCAGCTTCATGCCCTCGC 60.125 61.111 0.00 0.00 44.23 5.03
3215 15901 2.124819 CAGCTTCATGCCCTCGCT 60.125 61.111 0.00 0.00 44.23 4.93
3219 15905 4.081185 TTCATGCCCTCGCTGCGA 62.081 61.111 24.43 24.43 35.36 5.10
3234 15920 5.654497 TCGCTGCGAGATATGATATTTGAT 58.346 37.500 22.24 0.00 0.00 2.57
3236 15922 7.428826 TCGCTGCGAGATATGATATTTGATAT 58.571 34.615 22.24 0.00 0.00 1.63
3237 15923 7.380602 TCGCTGCGAGATATGATATTTGATATG 59.619 37.037 22.24 0.00 0.00 1.78
3239 15925 8.701540 GCTGCGAGATATGATATTTGATATGAG 58.298 37.037 0.00 0.00 0.00 2.90
3240 15926 9.962783 CTGCGAGATATGATATTTGATATGAGA 57.037 33.333 0.00 0.00 0.00 3.27
3253 15939 3.298958 TGAGATCGCTCACCACCC 58.701 61.111 0.00 0.00 45.88 4.61
3255 15941 0.904865 TGAGATCGCTCACCACCCTT 60.905 55.000 0.00 0.00 45.88 3.95
3256 15942 0.460987 GAGATCGCTCACCACCCTTG 60.461 60.000 0.00 0.00 40.96 3.61
3257 15943 2.045926 ATCGCTCACCACCCTTGC 60.046 61.111 0.00 0.00 0.00 4.01
3258 15944 3.628646 ATCGCTCACCACCCTTGCC 62.629 63.158 0.00 0.00 0.00 4.52
3262 15948 2.933287 TCACCACCCTTGCCCGAT 60.933 61.111 0.00 0.00 0.00 4.18
3263 15949 2.751436 CACCACCCTTGCCCGATG 60.751 66.667 0.00 0.00 0.00 3.84
3264 15950 4.047125 ACCACCCTTGCCCGATGG 62.047 66.667 0.00 0.00 36.46 3.51
3267 15953 2.035626 ACCCTTGCCCGATGGTTG 59.964 61.111 0.00 0.00 0.00 3.77
3269 15955 2.046285 CCCTTGCCCGATGGTTGAC 61.046 63.158 0.00 0.00 0.00 3.18
3270 15956 2.398554 CCTTGCCCGATGGTTGACG 61.399 63.158 0.00 0.00 0.00 4.35
3271 15957 3.039202 CTTGCCCGATGGTTGACGC 62.039 63.158 0.00 0.00 0.00 5.19
3276 15962 2.046314 CGATGGTTGACGCCCCTT 60.046 61.111 0.00 0.00 0.00 3.95
3278 15964 1.087771 CGATGGTTGACGCCCCTTAC 61.088 60.000 0.00 0.00 0.00 2.34
3280 15966 1.546589 ATGGTTGACGCCCCTTACGA 61.547 55.000 0.00 0.00 0.00 3.43
3281 15967 1.739196 GGTTGACGCCCCTTACGAC 60.739 63.158 0.00 0.00 0.00 4.34
3282 15968 1.291272 GTTGACGCCCCTTACGACT 59.709 57.895 0.00 0.00 0.00 4.18
3284 15970 0.896940 TTGACGCCCCTTACGACTCT 60.897 55.000 0.00 0.00 0.00 3.24
3285 15971 0.035152 TGACGCCCCTTACGACTCTA 60.035 55.000 0.00 0.00 0.00 2.43
3286 15972 0.380024 GACGCCCCTTACGACTCTAC 59.620 60.000 0.00 0.00 0.00 2.59
3287 15973 1.354506 CGCCCCTTACGACTCTACG 59.645 63.158 0.00 0.00 39.31 3.51
3288 15974 1.732308 GCCCCTTACGACTCTACGG 59.268 63.158 0.00 0.00 37.61 4.02
3289 15975 1.732417 GCCCCTTACGACTCTACGGG 61.732 65.000 0.00 0.00 37.61 5.28
3290 15976 1.105759 CCCCTTACGACTCTACGGGG 61.106 65.000 0.00 0.00 44.79 5.73
3291 15977 0.107017 CCCTTACGACTCTACGGGGA 60.107 60.000 0.00 0.00 35.40 4.81
3294 15980 2.295885 CTTACGACTCTACGGGGATGT 58.704 52.381 0.00 0.00 37.61 3.06
3295 15981 2.425143 TACGACTCTACGGGGATGTT 57.575 50.000 0.00 0.00 37.61 2.71
3297 15983 2.726821 ACGACTCTACGGGGATGTTTA 58.273 47.619 0.00 0.00 37.61 2.01
3298 15984 3.091545 ACGACTCTACGGGGATGTTTAA 58.908 45.455 0.00 0.00 37.61 1.52
3299 15985 3.511146 ACGACTCTACGGGGATGTTTAAA 59.489 43.478 0.00 0.00 37.61 1.52
3300 15986 4.021192 ACGACTCTACGGGGATGTTTAAAA 60.021 41.667 0.00 0.00 37.61 1.52
3302 15988 5.622914 CGACTCTACGGGGATGTTTAAAAGA 60.623 44.000 0.00 0.00 0.00 2.52
3303 15989 6.117975 ACTCTACGGGGATGTTTAAAAGAA 57.882 37.500 0.00 0.00 0.00 2.52
3304 15990 6.718294 ACTCTACGGGGATGTTTAAAAGAAT 58.282 36.000 0.00 0.00 0.00 2.40
3305 15991 6.822170 ACTCTACGGGGATGTTTAAAAGAATC 59.178 38.462 0.00 0.00 0.00 2.52
3306 15992 6.117488 TCTACGGGGATGTTTAAAAGAATCC 58.883 40.000 13.70 13.70 38.30 3.01
3337 16085 7.041721 GGAAACCTGTCAAAAGAATCTTTTGT 58.958 34.615 33.97 20.76 39.62 2.83
3351 16102 9.651913 AAGAATCTTTTGTAGAAAAAGCAACAA 57.348 25.926 5.83 0.00 37.22 2.83
3357 16108 0.454196 AGAAAAAGCAACAACCGCGT 59.546 45.000 4.92 0.00 0.00 6.01
3367 16118 2.307363 CAACCGCGTTGTCAGTCTT 58.693 52.632 4.92 0.00 38.56 3.01
3374 16125 3.185594 CCGCGTTGTCAGTCTTCAAAATA 59.814 43.478 4.92 0.00 0.00 1.40
3375 16126 4.319190 CCGCGTTGTCAGTCTTCAAAATAA 60.319 41.667 4.92 0.00 0.00 1.40
3376 16127 4.607235 CGCGTTGTCAGTCTTCAAAATAAC 59.393 41.667 0.00 0.00 0.00 1.89
3416 16167 8.958119 ATGTAATACCAATATATAACCCAGCG 57.042 34.615 0.00 0.00 0.00 5.18
3453 16204 2.158769 TCTGCTTCATCCACACAAGTGT 60.159 45.455 0.00 0.00 44.39 3.55
3456 16207 3.138304 GCTTCATCCACACAAGTGTACA 58.862 45.455 5.41 0.00 44.39 2.90
3473 16224 5.944007 AGTGTACAACCTGATAAAATCCCAC 59.056 40.000 0.00 0.00 0.00 4.61
3522 16273 2.318908 TCCTGGCAATTATCCCAATGC 58.681 47.619 0.00 0.00 38.06 3.56
3533 16284 0.182061 TCCCAATGCTGGCAGATCTC 59.818 55.000 20.86 0.00 41.99 2.75
3570 16321 9.478019 CAAAACTAGCATCAACGTTTATCTTAG 57.522 33.333 0.00 3.45 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
822 9851 1.912731 TGCATACAAGTTGGGCTAGGA 59.087 47.619 7.96 0.00 0.00 2.94
1377 12528 0.809636 TCAACCAGTGTGTCTGTGCG 60.810 55.000 0.00 0.00 42.19 5.34
1444 12700 2.393271 AGACAGCAGCACTACCAATC 57.607 50.000 0.00 0.00 0.00 2.67
1818 14167 5.411977 CAGTCAAGATCAGAGAAGCAACAAT 59.588 40.000 0.00 0.00 0.00 2.71
1957 14310 1.896220 TGCAATCAAGGAGTCACACC 58.104 50.000 0.00 0.00 0.00 4.16
1971 14325 2.876550 CGAGTGTGATCCATCATGCAAT 59.123 45.455 0.00 0.00 39.30 3.56
2024 14387 1.486310 AGCATTGGACTTATCGGCTGA 59.514 47.619 0.00 0.00 0.00 4.26
2206 14597 0.469705 TCACTGCACAAAAGGGGCAT 60.470 50.000 0.00 0.00 36.87 4.40
2412 15016 0.605319 GACAACCGATGAGGGCAACA 60.605 55.000 0.00 0.00 46.96 3.33
2430 15038 3.379057 TGCATAAGAACGAGTATGGACGA 59.621 43.478 0.00 0.00 0.00 4.20
2514 15159 5.105269 TGTCTACGCATACCAGTTTGGATTA 60.105 40.000 1.40 0.00 40.96 1.75
2583 15252 1.983691 ACAGGAGGGGAGCATATCATG 59.016 52.381 0.00 0.00 0.00 3.07
2595 15264 2.133281 TGATGATGCAAACAGGAGGG 57.867 50.000 0.00 0.00 0.00 4.30
2637 15307 2.248487 CAAGCGATTTTCAAGCAGAGC 58.752 47.619 0.00 0.00 0.00 4.09
2744 15414 5.018539 TGCTATCACGCCTACAAGTTTAT 57.981 39.130 0.00 0.00 0.00 1.40
2785 15455 3.149899 CATCCGATGCTATGGCCTC 57.850 57.895 3.32 0.00 37.74 4.70
2809 15479 2.408050 CGTATGTATGCAGAAGAGGGC 58.592 52.381 0.00 0.00 0.00 5.19
2813 15483 2.863401 ACGCGTATGTATGCAGAAGA 57.137 45.000 11.67 0.00 38.09 2.87
2814 15484 4.503007 AGTTTACGCGTATGTATGCAGAAG 59.497 41.667 21.30 0.00 38.09 2.85
2815 15485 4.266739 CAGTTTACGCGTATGTATGCAGAA 59.733 41.667 21.30 4.92 38.09 3.02
2852 15522 4.519540 CCAACTGTATTTTTCCAGTGGG 57.480 45.455 9.92 0.00 44.27 4.61
2857 15527 5.690865 AGACTGTCCAACTGTATTTTTCCA 58.309 37.500 3.76 0.00 30.17 3.53
2874 15544 3.068307 AGCTTCGTACAACTGAAGACTGT 59.932 43.478 11.14 0.00 43.34 3.55
2887 15557 4.799428 GGAGTCATAAGTTGAGCTTCGTAC 59.201 45.833 0.00 0.00 38.57 3.67
2891 15561 5.293079 GTGATGGAGTCATAAGTTGAGCTTC 59.707 44.000 0.00 0.00 39.48 3.86
2908 15578 2.553028 GGTTTTCTGCTCCAGTGATGGA 60.553 50.000 0.00 0.00 36.40 3.41
2916 15586 1.888512 GATGCTTGGTTTTCTGCTCCA 59.111 47.619 0.00 0.00 0.00 3.86
2917 15587 2.165998 AGATGCTTGGTTTTCTGCTCC 58.834 47.619 0.00 0.00 0.00 4.70
2950 15636 5.946377 GTGTTGGATTCCCTCTGTATTTCTT 59.054 40.000 0.00 0.00 0.00 2.52
2951 15637 5.014123 TGTGTTGGATTCCCTCTGTATTTCT 59.986 40.000 0.00 0.00 0.00 2.52
2952 15638 5.253330 TGTGTTGGATTCCCTCTGTATTTC 58.747 41.667 0.00 0.00 0.00 2.17
2953 15639 5.255397 TGTGTTGGATTCCCTCTGTATTT 57.745 39.130 0.00 0.00 0.00 1.40
2954 15640 4.927267 TGTGTTGGATTCCCTCTGTATT 57.073 40.909 0.00 0.00 0.00 1.89
2955 15641 4.785301 CATGTGTTGGATTCCCTCTGTAT 58.215 43.478 0.00 0.00 0.00 2.29
2957 15643 2.881403 GCATGTGTTGGATTCCCTCTGT 60.881 50.000 0.00 0.00 0.00 3.41
2959 15645 1.355381 TGCATGTGTTGGATTCCCTCT 59.645 47.619 0.00 0.00 0.00 3.69
2960 15646 1.838112 TGCATGTGTTGGATTCCCTC 58.162 50.000 0.00 0.00 0.00 4.30
2961 15647 2.381911 GATGCATGTGTTGGATTCCCT 58.618 47.619 2.46 0.00 36.38 4.20
2962 15648 1.410153 GGATGCATGTGTTGGATTCCC 59.590 52.381 2.46 0.00 36.38 3.97
2963 15649 2.101783 TGGATGCATGTGTTGGATTCC 58.898 47.619 2.46 0.00 36.38 3.01
2964 15650 2.478370 CGTGGATGCATGTGTTGGATTC 60.478 50.000 2.46 0.00 36.38 2.52
2965 15651 1.473677 CGTGGATGCATGTGTTGGATT 59.526 47.619 2.46 0.00 36.38 3.01
2966 15652 1.097232 CGTGGATGCATGTGTTGGAT 58.903 50.000 2.46 0.00 39.39 3.41
2967 15653 0.250684 ACGTGGATGCATGTGTTGGA 60.251 50.000 11.70 0.00 0.00 3.53
2968 15654 0.597568 AACGTGGATGCATGTGTTGG 59.402 50.000 13.27 0.00 0.00 3.77
2969 15655 1.266446 TCAACGTGGATGCATGTGTTG 59.734 47.619 13.27 16.03 38.36 3.33
2970 15656 1.603456 TCAACGTGGATGCATGTGTT 58.397 45.000 13.27 4.84 0.00 3.32
2971 15657 1.739466 GATCAACGTGGATGCATGTGT 59.261 47.619 10.99 2.62 0.00 3.72
2972 15658 1.064505 GGATCAACGTGGATGCATGTG 59.935 52.381 18.67 7.61 35.87 3.21
2973 15659 1.065199 AGGATCAACGTGGATGCATGT 60.065 47.619 24.38 6.20 38.01 3.21
2974 15660 1.671979 AGGATCAACGTGGATGCATG 58.328 50.000 24.38 4.68 38.01 4.06
2975 15661 2.092753 AGAAGGATCAACGTGGATGCAT 60.093 45.455 24.38 14.26 38.01 3.96
2976 15662 1.278985 AGAAGGATCAACGTGGATGCA 59.721 47.619 24.38 0.00 38.01 3.96
2977 15663 2.029838 AGAAGGATCAACGTGGATGC 57.970 50.000 16.15 16.15 36.03 3.91
2978 15664 3.133003 AGGTAGAAGGATCAACGTGGATG 59.867 47.826 10.99 0.00 0.00 3.51
2979 15665 3.375699 AGGTAGAAGGATCAACGTGGAT 58.624 45.455 4.73 4.73 0.00 3.41
2980 15666 2.816411 AGGTAGAAGGATCAACGTGGA 58.184 47.619 0.00 0.00 0.00 4.02
2981 15667 3.181478 GGTAGGTAGAAGGATCAACGTGG 60.181 52.174 0.00 0.00 0.00 4.94
2982 15668 3.446161 TGGTAGGTAGAAGGATCAACGTG 59.554 47.826 0.00 0.00 0.00 4.49
2983 15669 3.705051 TGGTAGGTAGAAGGATCAACGT 58.295 45.455 0.00 0.00 0.00 3.99
2984 15670 4.159879 AGTTGGTAGGTAGAAGGATCAACG 59.840 45.833 0.00 0.00 38.45 4.10
2985 15671 5.678955 AGTTGGTAGGTAGAAGGATCAAC 57.321 43.478 0.00 0.00 35.04 3.18
2986 15672 6.500336 AGTAGTTGGTAGGTAGAAGGATCAA 58.500 40.000 0.00 0.00 0.00 2.57
2987 15673 6.088541 AGTAGTTGGTAGGTAGAAGGATCA 57.911 41.667 0.00 0.00 0.00 2.92
2988 15674 7.421087 AAAGTAGTTGGTAGGTAGAAGGATC 57.579 40.000 0.00 0.00 0.00 3.36
2989 15675 7.809880 AAAAGTAGTTGGTAGGTAGAAGGAT 57.190 36.000 0.00 0.00 0.00 3.24
2990 15676 8.725606 TTAAAAGTAGTTGGTAGGTAGAAGGA 57.274 34.615 0.00 0.00 0.00 3.36
2991 15677 8.810041 TCTTAAAAGTAGTTGGTAGGTAGAAGG 58.190 37.037 0.00 0.00 0.00 3.46
2992 15678 9.857957 CTCTTAAAAGTAGTTGGTAGGTAGAAG 57.142 37.037 0.00 0.00 0.00 2.85
2993 15679 8.810041 CCTCTTAAAAGTAGTTGGTAGGTAGAA 58.190 37.037 0.00 0.00 0.00 2.10
2994 15680 7.952368 ACCTCTTAAAAGTAGTTGGTAGGTAGA 59.048 37.037 0.00 0.00 32.02 2.59
2995 15681 8.131847 ACCTCTTAAAAGTAGTTGGTAGGTAG 57.868 38.462 0.00 0.00 32.02 3.18
2996 15682 8.496534 AACCTCTTAAAAGTAGTTGGTAGGTA 57.503 34.615 0.00 0.00 33.40 3.08
2997 15683 7.384524 AACCTCTTAAAAGTAGTTGGTAGGT 57.615 36.000 0.00 0.00 35.18 3.08
2998 15684 8.687292 AAAACCTCTTAAAAGTAGTTGGTAGG 57.313 34.615 0.00 0.00 0.00 3.18
2999 15685 9.946165 CAAAAACCTCTTAAAAGTAGTTGGTAG 57.054 33.333 0.00 0.00 0.00 3.18
3000 15686 8.407832 GCAAAAACCTCTTAAAAGTAGTTGGTA 58.592 33.333 0.00 0.00 0.00 3.25
3001 15687 7.093684 TGCAAAAACCTCTTAAAAGTAGTTGGT 60.094 33.333 0.00 0.00 0.00 3.67
3002 15688 7.262048 TGCAAAAACCTCTTAAAAGTAGTTGG 58.738 34.615 0.00 0.00 0.00 3.77
3003 15689 7.973944 ACTGCAAAAACCTCTTAAAAGTAGTTG 59.026 33.333 0.00 0.00 0.00 3.16
3004 15690 8.063200 ACTGCAAAAACCTCTTAAAAGTAGTT 57.937 30.769 0.00 0.00 0.00 2.24
3005 15691 7.640597 ACTGCAAAAACCTCTTAAAAGTAGT 57.359 32.000 0.00 0.00 0.00 2.73
3009 15695 8.926715 AGTAAACTGCAAAAACCTCTTAAAAG 57.073 30.769 0.00 0.00 0.00 2.27
3010 15696 8.524487 TGAGTAAACTGCAAAAACCTCTTAAAA 58.476 29.630 0.00 0.00 0.00 1.52
3012 15698 7.121463 TGTGAGTAAACTGCAAAAACCTCTTAA 59.879 33.333 0.00 0.00 0.00 1.85
3017 15703 5.652994 TTGTGAGTAAACTGCAAAAACCT 57.347 34.783 0.00 0.00 0.00 3.50
3018 15704 6.902224 AATTGTGAGTAAACTGCAAAAACC 57.098 33.333 0.00 0.00 0.00 3.27
3019 15705 8.850454 TCTAATTGTGAGTAAACTGCAAAAAC 57.150 30.769 0.00 0.00 0.00 2.43
3026 15712 9.046296 ACTCTGTTTCTAATTGTGAGTAAACTG 57.954 33.333 0.00 0.00 32.44 3.16
3057 15743 9.113838 GGCAGAATTCTTTCAGAAATAGATACA 57.886 33.333 4.86 0.00 37.82 2.29
3058 15744 9.336171 AGGCAGAATTCTTTCAGAAATAGATAC 57.664 33.333 4.86 0.00 37.82 2.24
3061 15747 7.492669 CGTAGGCAGAATTCTTTCAGAAATAGA 59.507 37.037 4.86 0.00 37.82 1.98
3062 15748 7.492669 TCGTAGGCAGAATTCTTTCAGAAATAG 59.507 37.037 4.86 0.00 37.82 1.73
3063 15749 7.327975 TCGTAGGCAGAATTCTTTCAGAAATA 58.672 34.615 4.86 0.00 37.82 1.40
3065 15751 5.547465 TCGTAGGCAGAATTCTTTCAGAAA 58.453 37.500 4.86 0.00 37.82 2.52
3067 15753 4.801330 TCGTAGGCAGAATTCTTTCAGA 57.199 40.909 4.86 0.00 34.08 3.27
3068 15754 4.932200 AGTTCGTAGGCAGAATTCTTTCAG 59.068 41.667 4.86 0.00 34.08 3.02
3069 15755 4.894784 AGTTCGTAGGCAGAATTCTTTCA 58.105 39.130 4.86 0.00 34.08 2.69
3070 15756 6.100668 AGTAGTTCGTAGGCAGAATTCTTTC 58.899 40.000 4.86 0.85 0.00 2.62
3071 15757 6.038997 AGTAGTTCGTAGGCAGAATTCTTT 57.961 37.500 4.86 0.00 0.00 2.52
3072 15758 5.394333 GGAGTAGTTCGTAGGCAGAATTCTT 60.394 44.000 4.86 0.00 0.00 2.52
3074 15760 4.142227 TGGAGTAGTTCGTAGGCAGAATTC 60.142 45.833 0.00 0.00 0.00 2.17
3076 15762 3.130693 GTGGAGTAGTTCGTAGGCAGAAT 59.869 47.826 0.00 0.00 0.00 2.40
3079 15765 1.816835 TGTGGAGTAGTTCGTAGGCAG 59.183 52.381 0.00 0.00 0.00 4.85
3080 15766 1.913778 TGTGGAGTAGTTCGTAGGCA 58.086 50.000 0.00 0.00 0.00 4.75
3081 15767 3.187700 CATTGTGGAGTAGTTCGTAGGC 58.812 50.000 0.00 0.00 0.00 3.93
3082 15768 3.187700 GCATTGTGGAGTAGTTCGTAGG 58.812 50.000 0.00 0.00 0.00 3.18
3083 15769 3.845178 TGCATTGTGGAGTAGTTCGTAG 58.155 45.455 0.00 0.00 0.00 3.51
3086 15772 2.416547 CCTTGCATTGTGGAGTAGTTCG 59.583 50.000 0.00 0.00 0.00 3.95
3088 15774 3.788227 TCCTTGCATTGTGGAGTAGTT 57.212 42.857 0.00 0.00 0.00 2.24
3089 15775 4.263462 TGAATCCTTGCATTGTGGAGTAGT 60.263 41.667 0.00 0.00 32.95 2.73
3090 15776 4.264253 TGAATCCTTGCATTGTGGAGTAG 58.736 43.478 0.00 0.00 32.95 2.57
3091 15777 4.299586 TGAATCCTTGCATTGTGGAGTA 57.700 40.909 0.00 0.00 32.95 2.59
3092 15778 3.159213 TGAATCCTTGCATTGTGGAGT 57.841 42.857 0.00 0.00 32.95 3.85
3093 15779 3.675228 GCTTGAATCCTTGCATTGTGGAG 60.675 47.826 0.00 0.00 32.95 3.86
3095 15781 2.028839 TGCTTGAATCCTTGCATTGTGG 60.029 45.455 0.00 0.00 0.00 4.17
3096 15782 3.306917 TGCTTGAATCCTTGCATTGTG 57.693 42.857 0.00 0.00 0.00 3.33
3098 15784 4.118093 TGATGCTTGAATCCTTGCATTG 57.882 40.909 0.00 0.00 44.80 2.82
3099 15785 4.811969 TTGATGCTTGAATCCTTGCATT 57.188 36.364 0.00 0.00 44.80 3.56
3101 15787 3.321396 TGTTTGATGCTTGAATCCTTGCA 59.679 39.130 0.00 0.00 39.83 4.08
3102 15788 3.676646 GTGTTTGATGCTTGAATCCTTGC 59.323 43.478 0.00 0.00 0.00 4.01
3103 15789 3.916172 CGTGTTTGATGCTTGAATCCTTG 59.084 43.478 0.00 0.00 0.00 3.61
3104 15790 3.820467 TCGTGTTTGATGCTTGAATCCTT 59.180 39.130 0.00 0.00 0.00 3.36
3105 15791 3.411446 TCGTGTTTGATGCTTGAATCCT 58.589 40.909 0.00 0.00 0.00 3.24
3106 15792 3.436704 TCTCGTGTTTGATGCTTGAATCC 59.563 43.478 0.00 0.00 0.00 3.01
3107 15793 4.668576 TCTCGTGTTTGATGCTTGAATC 57.331 40.909 0.00 0.00 0.00 2.52
3108 15794 4.978186 CATCTCGTGTTTGATGCTTGAAT 58.022 39.130 0.00 0.00 34.52 2.57
3115 15801 6.036470 TCTAGTAAGCATCTCGTGTTTGATG 58.964 40.000 0.00 0.00 41.96 3.07
3116 15802 6.208988 TCTAGTAAGCATCTCGTGTTTGAT 57.791 37.500 0.00 0.00 33.07 2.57
3117 15803 5.638596 TCTAGTAAGCATCTCGTGTTTGA 57.361 39.130 0.00 0.00 33.07 2.69
3118 15804 6.269315 AGATCTAGTAAGCATCTCGTGTTTG 58.731 40.000 0.00 0.00 33.07 2.93
3120 15806 6.320164 AGAAGATCTAGTAAGCATCTCGTGTT 59.680 38.462 0.00 0.00 0.00 3.32
3121 15807 5.825679 AGAAGATCTAGTAAGCATCTCGTGT 59.174 40.000 0.00 0.00 0.00 4.49
3122 15808 6.312399 AGAAGATCTAGTAAGCATCTCGTG 57.688 41.667 0.00 0.00 0.00 4.35
3123 15809 6.653320 CCTAGAAGATCTAGTAAGCATCTCGT 59.347 42.308 12.15 0.00 43.76 4.18
3124 15810 6.403200 GCCTAGAAGATCTAGTAAGCATCTCG 60.403 46.154 12.15 0.00 43.76 4.04
3125 15811 6.659242 AGCCTAGAAGATCTAGTAAGCATCTC 59.341 42.308 12.15 0.00 43.76 2.75
3129 15815 6.005198 GGTAGCCTAGAAGATCTAGTAAGCA 58.995 44.000 12.15 0.56 43.76 3.91
3130 15816 6.243148 AGGTAGCCTAGAAGATCTAGTAAGC 58.757 44.000 12.15 8.99 43.76 3.09
3131 15817 8.700439 AAAGGTAGCCTAGAAGATCTAGTAAG 57.300 38.462 12.15 0.00 43.76 2.34
3132 15818 9.134055 GAAAAGGTAGCCTAGAAGATCTAGTAA 57.866 37.037 12.15 0.00 43.76 2.24
3133 15819 8.504409 AGAAAAGGTAGCCTAGAAGATCTAGTA 58.496 37.037 12.15 0.00 43.76 1.82
3134 15820 7.359056 AGAAAAGGTAGCCTAGAAGATCTAGT 58.641 38.462 12.15 0.00 43.76 2.57
3135 15821 7.833285 AGAAAAGGTAGCCTAGAAGATCTAG 57.167 40.000 0.00 7.31 44.62 2.43
3137 15823 7.359056 ACTAGAAAAGGTAGCCTAGAAGATCT 58.641 38.462 0.00 0.00 34.34 2.75
3138 15824 7.255695 GGACTAGAAAAGGTAGCCTAGAAGATC 60.256 44.444 0.00 0.00 34.34 2.75
3139 15825 6.551975 GGACTAGAAAAGGTAGCCTAGAAGAT 59.448 42.308 0.00 0.00 34.34 2.40
3141 15827 5.894964 AGGACTAGAAAAGGTAGCCTAGAAG 59.105 44.000 0.00 0.00 34.34 2.85
3144 15830 5.242171 GCTAGGACTAGAAAAGGTAGCCTAG 59.758 48.000 10.43 0.00 41.48 3.02
3145 15831 5.139001 GCTAGGACTAGAAAAGGTAGCCTA 58.861 45.833 10.43 0.00 35.21 3.93
3147 15833 3.069872 GGCTAGGACTAGAAAAGGTAGCC 59.930 52.174 10.43 5.76 41.89 3.93
3148 15834 3.705072 TGGCTAGGACTAGAAAAGGTAGC 59.295 47.826 10.43 0.18 35.21 3.58
3150 15836 4.468868 GGTTGGCTAGGACTAGAAAAGGTA 59.531 45.833 10.43 0.00 35.21 3.08
3151 15837 3.263681 GGTTGGCTAGGACTAGAAAAGGT 59.736 47.826 10.43 0.00 35.21 3.50
3154 15840 3.518303 GGAGGTTGGCTAGGACTAGAAAA 59.482 47.826 10.43 1.10 35.21 2.29
3156 15842 2.043939 TGGAGGTTGGCTAGGACTAGAA 59.956 50.000 10.43 0.00 35.21 2.10
3158 15844 1.757699 GTGGAGGTTGGCTAGGACTAG 59.242 57.143 1.98 1.98 36.29 2.57
3160 15846 0.910088 GGTGGAGGTTGGCTAGGACT 60.910 60.000 0.00 0.00 0.00 3.85
3161 15847 1.602771 GGTGGAGGTTGGCTAGGAC 59.397 63.158 0.00 0.00 0.00 3.85
3162 15848 1.987855 CGGTGGAGGTTGGCTAGGA 60.988 63.158 0.00 0.00 0.00 2.94
3163 15849 1.550130 TTCGGTGGAGGTTGGCTAGG 61.550 60.000 0.00 0.00 0.00 3.02
3165 15851 0.323629 CTTTCGGTGGAGGTTGGCTA 59.676 55.000 0.00 0.00 0.00 3.93
3166 15852 1.073199 CTTTCGGTGGAGGTTGGCT 59.927 57.895 0.00 0.00 0.00 4.75
3167 15853 1.072505 TCTTTCGGTGGAGGTTGGC 59.927 57.895 0.00 0.00 0.00 4.52
3168 15854 0.605589 GGTCTTTCGGTGGAGGTTGG 60.606 60.000 0.00 0.00 0.00 3.77
3169 15855 0.107831 TGGTCTTTCGGTGGAGGTTG 59.892 55.000 0.00 0.00 0.00 3.77
3171 15857 0.613777 GATGGTCTTTCGGTGGAGGT 59.386 55.000 0.00 0.00 0.00 3.85
3172 15858 0.460284 CGATGGTCTTTCGGTGGAGG 60.460 60.000 0.00 0.00 33.05 4.30
3173 15859 0.246635 ACGATGGTCTTTCGGTGGAG 59.753 55.000 0.00 0.00 40.83 3.86
3174 15860 0.245539 GACGATGGTCTTTCGGTGGA 59.754 55.000 0.00 0.00 40.83 4.02
3175 15861 1.076533 CGACGATGGTCTTTCGGTGG 61.077 60.000 6.29 0.00 41.16 4.61
3176 15862 0.109458 TCGACGATGGTCTTTCGGTG 60.109 55.000 6.29 0.00 41.16 4.94
3178 15864 0.170561 AGTCGACGATGGTCTTTCGG 59.829 55.000 10.46 0.00 41.16 4.30
3179 15865 1.135774 TGAGTCGACGATGGTCTTTCG 60.136 52.381 10.46 0.00 41.16 3.46
3180 15866 2.520979 CTGAGTCGACGATGGTCTTTC 58.479 52.381 10.46 0.00 41.16 2.62
3181 15867 1.402984 GCTGAGTCGACGATGGTCTTT 60.403 52.381 10.46 0.00 41.16 2.52
3182 15868 0.171455 GCTGAGTCGACGATGGTCTT 59.829 55.000 10.46 0.00 41.16 3.01
3183 15869 0.678366 AGCTGAGTCGACGATGGTCT 60.678 55.000 10.46 1.28 41.16 3.85
3184 15870 0.171455 AAGCTGAGTCGACGATGGTC 59.829 55.000 10.46 2.11 39.89 4.02
3185 15871 0.171455 GAAGCTGAGTCGACGATGGT 59.829 55.000 10.46 6.75 0.00 3.55
3186 15872 0.171231 TGAAGCTGAGTCGACGATGG 59.829 55.000 10.46 3.35 0.00 3.51
3187 15873 1.851053 CATGAAGCTGAGTCGACGATG 59.149 52.381 10.46 5.18 0.00 3.84
3188 15874 1.800655 GCATGAAGCTGAGTCGACGAT 60.801 52.381 10.46 0.00 41.15 3.73
3190 15876 1.416813 GGCATGAAGCTGAGTCGACG 61.417 60.000 10.46 0.00 44.79 5.12
3191 15877 1.086634 GGGCATGAAGCTGAGTCGAC 61.087 60.000 7.70 7.70 44.79 4.20
3194 15880 0.809241 CGAGGGCATGAAGCTGAGTC 60.809 60.000 0.00 0.00 44.79 3.36
3195 15881 1.220206 CGAGGGCATGAAGCTGAGT 59.780 57.895 0.00 0.00 44.79 3.41
3196 15882 2.178890 GCGAGGGCATGAAGCTGAG 61.179 63.158 0.00 0.00 44.79 3.35
3197 15883 2.124983 GCGAGGGCATGAAGCTGA 60.125 61.111 0.00 0.00 44.79 4.26
3200 15886 3.885521 GCAGCGAGGGCATGAAGC 61.886 66.667 0.00 0.00 43.41 3.86
3201 15887 3.570638 CGCAGCGAGGGCATGAAG 61.571 66.667 9.98 0.00 43.41 3.02
3202 15888 4.081185 TCGCAGCGAGGGCATGAA 62.081 61.111 15.11 0.00 43.41 2.57
3211 15897 5.059404 TCAAATATCATATCTCGCAGCGA 57.941 39.130 18.39 18.39 0.00 4.93
3213 15899 8.585189 TCATATCAAATATCATATCTCGCAGC 57.415 34.615 0.00 0.00 0.00 5.25
3214 15900 9.962783 TCTCATATCAAATATCATATCTCGCAG 57.037 33.333 0.00 0.00 0.00 5.18
3236 15922 0.904865 AAGGGTGGTGAGCGATCTCA 60.905 55.000 0.90 0.00 46.43 3.27
3237 15923 0.460987 CAAGGGTGGTGAGCGATCTC 60.461 60.000 0.90 0.00 39.78 2.75
3239 15925 2.109126 GCAAGGGTGGTGAGCGATC 61.109 63.158 0.00 0.00 0.00 3.69
3240 15926 2.045926 GCAAGGGTGGTGAGCGAT 60.046 61.111 0.00 0.00 0.00 4.58
3241 15927 4.329545 GGCAAGGGTGGTGAGCGA 62.330 66.667 0.00 0.00 0.00 4.93
3244 15930 2.971598 ATCGGGCAAGGGTGGTGAG 61.972 63.158 0.00 0.00 0.00 3.51
3245 15931 2.933287 ATCGGGCAAGGGTGGTGA 60.933 61.111 0.00 0.00 0.00 4.02
3246 15932 2.751436 CATCGGGCAAGGGTGGTG 60.751 66.667 0.00 0.00 0.00 4.17
3247 15933 4.047125 CCATCGGGCAAGGGTGGT 62.047 66.667 0.00 0.00 0.00 4.16
3249 15935 2.035626 AACCATCGGGCAAGGGTG 59.964 61.111 0.00 0.00 37.90 4.61
3252 15938 2.398554 CGTCAACCATCGGGCAAGG 61.399 63.158 0.00 0.00 37.90 3.61
3253 15939 3.039202 GCGTCAACCATCGGGCAAG 62.039 63.158 0.00 0.00 37.90 4.01
3258 15944 2.246761 TAAGGGGCGTCAACCATCGG 62.247 60.000 0.00 0.00 0.00 4.18
3259 15945 1.087771 GTAAGGGGCGTCAACCATCG 61.088 60.000 0.00 0.00 0.00 3.84
3260 15946 1.087771 CGTAAGGGGCGTCAACCATC 61.088 60.000 0.00 0.00 0.00 3.51
3262 15948 2.208619 TCGTAAGGGGCGTCAACCA 61.209 57.895 0.00 0.00 38.47 3.67
3263 15949 1.739196 GTCGTAAGGGGCGTCAACC 60.739 63.158 0.00 0.00 38.47 3.77
3264 15950 0.735287 GAGTCGTAAGGGGCGTCAAC 60.735 60.000 0.00 0.00 38.47 3.18
3267 15953 0.380024 GTAGAGTCGTAAGGGGCGTC 59.620 60.000 0.00 0.00 38.47 5.19
3269 15955 1.354506 CGTAGAGTCGTAAGGGGCG 59.645 63.158 0.00 0.00 38.47 6.13
3270 15956 1.732308 CCGTAGAGTCGTAAGGGGC 59.268 63.158 0.00 0.00 38.47 5.80
3271 15957 2.412605 CCCGTAGAGTCGTAAGGGG 58.587 63.158 10.65 8.75 37.89 4.79
3272 15958 0.107017 TCCCCGTAGAGTCGTAAGGG 60.107 60.000 11.22 11.22 40.45 3.95
3273 15959 1.607628 CATCCCCGTAGAGTCGTAAGG 59.392 57.143 0.00 0.00 38.47 2.69
3276 15962 2.425143 AACATCCCCGTAGAGTCGTA 57.575 50.000 0.00 0.00 0.00 3.43
3278 15964 3.788333 TTAAACATCCCCGTAGAGTCG 57.212 47.619 0.00 0.00 0.00 4.18
3280 15966 5.750352 TCTTTTAAACATCCCCGTAGAGT 57.250 39.130 0.00 0.00 0.00 3.24
3281 15967 6.260271 GGATTCTTTTAAACATCCCCGTAGAG 59.740 42.308 8.29 0.00 30.51 2.43
3282 15968 6.117488 GGATTCTTTTAAACATCCCCGTAGA 58.883 40.000 8.29 0.00 30.51 2.59
3284 15970 5.195185 GGGATTCTTTTAAACATCCCCGTA 58.805 41.667 20.11 0.00 46.69 4.02
3285 15971 4.021229 GGGATTCTTTTAAACATCCCCGT 58.979 43.478 20.11 0.00 46.69 5.28
3286 15972 4.649088 GGGATTCTTTTAAACATCCCCG 57.351 45.455 20.11 0.00 46.69 5.73
3289 15975 6.607198 TCCTCATGGGATTCTTTTAAACATCC 59.393 38.462 0.00 10.14 39.58 3.51
3290 15976 7.645058 TCCTCATGGGATTCTTTTAAACATC 57.355 36.000 0.00 0.00 39.58 3.06
3291 15977 8.314021 GTTTCCTCATGGGATTCTTTTAAACAT 58.686 33.333 0.00 0.00 44.66 2.71
3294 15980 7.016296 AGGTTTCCTCATGGGATTCTTTTAAA 58.984 34.615 0.00 0.00 44.66 1.52
3295 15981 6.437162 CAGGTTTCCTCATGGGATTCTTTTAA 59.563 38.462 0.00 0.00 44.66 1.52
3297 15983 4.774200 CAGGTTTCCTCATGGGATTCTTTT 59.226 41.667 0.00 0.00 44.66 2.27
3298 15984 4.202716 ACAGGTTTCCTCATGGGATTCTTT 60.203 41.667 0.00 0.00 44.66 2.52
3299 15985 3.334881 ACAGGTTTCCTCATGGGATTCTT 59.665 43.478 0.00 0.00 44.66 2.52
3300 15986 2.922283 ACAGGTTTCCTCATGGGATTCT 59.078 45.455 0.00 0.00 44.66 2.40
3302 15988 2.649312 TGACAGGTTTCCTCATGGGATT 59.351 45.455 0.00 0.00 44.66 3.01
3303 15989 2.278245 TGACAGGTTTCCTCATGGGAT 58.722 47.619 0.00 0.00 44.66 3.85
3304 15990 1.741028 TGACAGGTTTCCTCATGGGA 58.259 50.000 0.00 0.00 43.41 4.37
3305 15991 2.584835 TTGACAGGTTTCCTCATGGG 57.415 50.000 0.00 0.00 0.00 4.00
3306 15992 4.144297 TCTTTTGACAGGTTTCCTCATGG 58.856 43.478 0.00 0.00 0.00 3.66
3308 15994 6.310149 AGATTCTTTTGACAGGTTTCCTCAT 58.690 36.000 0.00 0.00 0.00 2.90
3310 15996 6.641169 AAGATTCTTTTGACAGGTTTCCTC 57.359 37.500 0.00 0.00 0.00 3.71
3315 16063 8.519799 TCTACAAAAGATTCTTTTGACAGGTT 57.480 30.769 39.16 25.84 40.73 3.50
3337 16085 1.671845 ACGCGGTTGTTGCTTTTTCTA 59.328 42.857 12.47 0.00 0.00 2.10
3351 16102 0.179094 TTGAAGACTGACAACGCGGT 60.179 50.000 12.47 0.00 0.00 5.68
3357 16108 7.338196 TCCTGTTGTTATTTTGAAGACTGACAA 59.662 33.333 0.00 0.00 0.00 3.18
3367 16118 7.411486 TTCCAAAGTCCTGTTGTTATTTTGA 57.589 32.000 0.00 0.00 0.00 2.69
3374 16125 6.976934 ATTACATTCCAAAGTCCTGTTGTT 57.023 33.333 0.00 0.00 0.00 2.83
3375 16126 6.433093 GGTATTACATTCCAAAGTCCTGTTGT 59.567 38.462 0.00 0.00 0.00 3.32
3376 16127 6.432783 TGGTATTACATTCCAAAGTCCTGTTG 59.567 38.462 0.00 0.00 0.00 3.33
3416 16167 2.276680 GAATTTCGTGCGGCGCTC 60.277 61.111 33.26 27.80 41.07 5.03
3453 16204 5.423704 TCGTGGGATTTTATCAGGTTGTA 57.576 39.130 0.00 0.00 0.00 2.41
3456 16207 3.521937 TCCTCGTGGGATTTTATCAGGTT 59.478 43.478 3.23 0.00 39.58 3.50
3473 16224 1.014564 GCGAAGTCCTGGTTTCCTCG 61.015 60.000 0.00 0.00 0.00 4.63
3522 16273 1.270412 GGAGAGCATGAGATCTGCCAG 60.270 57.143 0.00 0.00 42.03 4.85
3533 16284 3.076621 TGCTAGTTTTGTGGAGAGCATG 58.923 45.455 0.00 0.00 35.12 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.