Multiple sequence alignment - TraesCS1A01G426000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G426000 chr1A 100.000 5714 0 0 1 5714 580744663 580738950 0.000000e+00 10552.0
1 TraesCS1A01G426000 chr1A 92.543 1797 122 8 2364 4156 580663394 580661606 0.000000e+00 2566.0
2 TraesCS1A01G426000 chr1A 83.616 2533 314 60 2812 5284 580568923 580566432 0.000000e+00 2285.0
3 TraesCS1A01G426000 chr1A 83.519 1972 284 29 2827 4781 580585491 580583544 0.000000e+00 1803.0
4 TraesCS1A01G426000 chr1A 94.464 1138 55 4 1002 2139 580665233 580664104 0.000000e+00 1746.0
5 TraesCS1A01G426000 chr1A 80.350 1888 318 37 2812 4673 580630557 580628697 0.000000e+00 1382.0
6 TraesCS1A01G426000 chr1A 80.743 1184 172 20 990 2122 580572725 580571547 0.000000e+00 872.0
7 TraesCS1A01G426000 chr1A 83.816 828 105 11 4084 4899 580661558 580660748 0.000000e+00 760.0
8 TraesCS1A01G426000 chr1A 90.021 471 47 0 1007 1477 580587327 580586857 1.360000e-170 610.0
9 TraesCS1A01G426000 chr1A 86.977 430 53 1 990 1416 580634600 580634171 1.110000e-131 481.0
10 TraesCS1A01G426000 chr1A 84.444 360 37 10 5356 5714 580575804 580575463 2.550000e-88 337.0
11 TraesCS1A01G426000 chr1A 91.736 242 16 3 2135 2373 580664071 580663831 3.300000e-87 333.0
12 TraesCS1A01G426000 chr1A 82.213 253 26 6 5354 5606 580660425 580660192 3.490000e-47 200.0
13 TraesCS1A01G426000 chr1A 85.276 163 9 6 5018 5165 580583378 580583216 2.760000e-33 154.0
14 TraesCS1A01G426000 chr1A 97.778 45 1 0 5327 5371 580582496 580582452 1.710000e-10 78.7
15 TraesCS1A01G426000 chr1B 87.779 2463 253 28 2848 5284 673871050 673868610 0.000000e+00 2837.0
16 TraesCS1A01G426000 chr1B 85.522 967 130 6 2827 3785 673863571 673862607 0.000000e+00 1002.0
17 TraesCS1A01G426000 chr1B 81.357 1164 184 22 990 2127 673865790 673864634 0.000000e+00 917.0
18 TraesCS1A01G426000 chr1B 87.442 430 54 0 999 1428 673876790 673876361 3.980000e-136 496.0
19 TraesCS1A01G426000 chr1B 86.783 401 41 8 5324 5714 673868522 673868124 2.440000e-118 436.0
20 TraesCS1A01G426000 chr1B 76.072 886 170 32 3810 4667 673862516 673861645 1.900000e-114 424.0
21 TraesCS1A01G426000 chr1B 80.718 529 90 9 1617 2139 673875899 673875377 8.920000e-108 401.0
22 TraesCS1A01G426000 chr1B 93.750 48 3 0 2320 2367 673875050 673875003 7.940000e-09 73.1
23 TraesCS1A01G426000 chr1D 84.208 2001 257 48 2812 4777 483874047 483872071 0.000000e+00 1890.0
24 TraesCS1A01G426000 chr1D 81.594 1983 304 41 2820 4768 483693315 483691360 0.000000e+00 1583.0
25 TraesCS1A01G426000 chr1D 86.672 1148 144 3 2827 3968 483881220 483880076 0.000000e+00 1264.0
26 TraesCS1A01G426000 chr1D 82.938 1137 135 29 3784 4899 483880074 483878976 0.000000e+00 970.0
27 TraesCS1A01G426000 chr1D 81.779 1169 170 14 990 2122 483875908 483874747 0.000000e+00 939.0
28 TraesCS1A01G426000 chr1D 81.679 1108 143 36 999 2053 483884905 483883805 0.000000e+00 867.0
29 TraesCS1A01G426000 chr1D 85.150 633 81 5 787 1414 483697828 483697204 2.250000e-178 636.0
30 TraesCS1A01G426000 chr1D 81.961 255 28 7 5354 5606 483878656 483878418 3.490000e-47 200.0
31 TraesCS1A01G426000 chr1D 77.946 331 23 10 427 721 483698032 483697716 1.650000e-35 161.0
32 TraesCS1A01G426000 chr7B 92.063 63 4 1 118 179 707762795 707762857 2.840000e-13 87.9
33 TraesCS1A01G426000 chr7B 94.872 39 2 0 141 179 706905601 706905563 1.720000e-05 62.1
34 TraesCS1A01G426000 chr7A 89.552 67 5 2 114 179 707687268 707687333 3.670000e-12 84.2
35 TraesCS1A01G426000 chr7A 90.476 63 5 1 118 179 710617433 710617371 1.320000e-11 82.4
36 TraesCS1A01G426000 chr4D 87.097 62 7 1 118 179 357528312 357528252 1.030000e-07 69.4
37 TraesCS1A01G426000 chrUn 100.000 30 0 0 150 179 33041135 33041164 8.000000e-04 56.5
38 TraesCS1A01G426000 chr3A 100.000 29 0 0 151 179 340812807 340812779 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G426000 chr1A 580738950 580744663 5713 True 10552.000000 10552 100.000000 1 5714 1 chr1A.!!$R1 5713
1 TraesCS1A01G426000 chr1A 580566432 580575804 9372 True 1164.666667 2285 82.934333 990 5714 3 chr1A.!!$R2 4724
2 TraesCS1A01G426000 chr1A 580660192 580665233 5041 True 1121.000000 2566 88.954400 1002 5606 5 chr1A.!!$R5 4604
3 TraesCS1A01G426000 chr1A 580628697 580634600 5903 True 931.500000 1382 83.663500 990 4673 2 chr1A.!!$R4 3683
4 TraesCS1A01G426000 chr1A 580582452 580587327 4875 True 661.425000 1803 89.148500 1007 5371 4 chr1A.!!$R3 4364
5 TraesCS1A01G426000 chr1B 673861645 673876790 15145 True 823.262500 2837 84.927875 990 5714 8 chr1B.!!$R1 4724
6 TraesCS1A01G426000 chr1D 483872071 483884905 12834 True 1021.666667 1890 83.206167 990 5606 6 chr1D.!!$R2 4616
7 TraesCS1A01G426000 chr1D 483691360 483698032 6672 True 793.333333 1583 81.563333 427 4768 3 chr1D.!!$R1 4341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.035247 TGTATGCAGCCATGACAGCA 60.035 50.000 0.83 0.83 41.73 4.41 F
675 707 0.036010 ACCTCTTGTTGCAGATCCGG 60.036 55.000 0.00 0.00 0.00 5.14 F
1389 3487 0.109597 CACTGGAGGCAAATGAACGC 60.110 55.000 0.00 0.00 0.00 4.84 F
1718 6011 0.396435 CTGCTGGTCTTGTGGGTACA 59.604 55.000 0.00 0.00 34.31 2.90 F
1955 6266 1.409427 GGGATGAATCGGTCTTCTCGT 59.591 52.381 0.00 0.00 32.27 4.18 F
3673 24324 0.904649 TGGTGGTGTAGCAGATGAGG 59.095 55.000 0.00 0.00 32.05 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 6110 1.102978 ACACCTGTTTGGCAAGTGTC 58.897 50.000 14.91 2.90 46.53 3.67 R
1955 6266 3.576078 ATGTCTTCCACCTCACAAACA 57.424 42.857 0.00 0.00 0.00 2.83 R
2875 16183 0.034767 CATGCTGACTGGTCCCACAT 60.035 55.000 0.00 0.00 0.00 3.21 R
3234 16566 1.144093 CCTTCCACTGTGGGGTTTACA 59.856 52.381 25.67 2.39 38.32 2.41 R
3898 24552 0.968405 TCCAAATGCACAAGCCCTTC 59.032 50.000 0.00 0.00 41.13 3.46 R
5214 26454 0.033090 CTACCGCCGTCCTATTTCCC 59.967 60.000 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.907197 ATGGACTAACTATTGCGATTTCG 57.093 39.130 0.00 0.00 43.27 3.46
25 26 5.001237 TGGACTAACTATTGCGATTTCGA 57.999 39.130 3.77 0.00 43.02 3.71
26 27 5.597806 TGGACTAACTATTGCGATTTCGAT 58.402 37.500 3.77 0.00 43.02 3.59
27 28 6.046593 TGGACTAACTATTGCGATTTCGATT 58.953 36.000 3.77 0.00 43.02 3.34
28 29 6.537301 TGGACTAACTATTGCGATTTCGATTT 59.463 34.615 3.77 0.00 43.02 2.17
29 30 7.707464 TGGACTAACTATTGCGATTTCGATTTA 59.293 33.333 3.77 0.00 43.02 1.40
30 31 8.545420 GGACTAACTATTGCGATTTCGATTTAA 58.455 33.333 3.77 0.00 43.02 1.52
31 32 9.910511 GACTAACTATTGCGATTTCGATTTAAA 57.089 29.630 3.77 0.00 43.02 1.52
54 55 5.402464 AAAAACCATTGCGATTTCACAAC 57.598 34.783 0.00 0.00 0.00 3.32
55 56 3.724508 AACCATTGCGATTTCACAACA 57.275 38.095 0.00 0.00 0.00 3.33
57 58 3.577667 ACCATTGCGATTTCACAACATG 58.422 40.909 0.00 0.00 0.00 3.21
58 59 3.005684 ACCATTGCGATTTCACAACATGT 59.994 39.130 0.00 0.00 0.00 3.21
60 61 4.143284 CCATTGCGATTTCACAACATGTTG 60.143 41.667 32.03 32.03 45.58 3.33
74 75 6.586868 CAACATGTTGTACAAAATTGCAGT 57.413 33.333 27.08 1.77 35.92 4.40
76 77 5.659463 ACATGTTGTACAAAATTGCAGTGT 58.341 33.333 10.51 2.19 0.00 3.55
77 78 6.800543 ACATGTTGTACAAAATTGCAGTGTA 58.199 32.000 10.51 0.00 0.00 2.90
79 80 7.925483 ACATGTTGTACAAAATTGCAGTGTAAT 59.075 29.630 10.51 0.00 29.93 1.89
80 81 8.763356 CATGTTGTACAAAATTGCAGTGTAATT 58.237 29.630 10.51 12.80 29.93 1.40
81 82 9.973450 ATGTTGTACAAAATTGCAGTGTAATTA 57.027 25.926 17.98 1.71 29.93 1.40
96 97 9.899226 GCAGTGTAATTATCTTGATTATTTCCC 57.101 33.333 1.11 0.00 0.00 3.97
109 110 9.341899 CTTGATTATTTCCCTTGTTTTACTTCG 57.658 33.333 0.00 0.00 0.00 3.79
110 111 7.822658 TGATTATTTCCCTTGTTTTACTTCGG 58.177 34.615 0.00 0.00 0.00 4.30
111 112 3.994204 TTTCCCTTGTTTTACTTCGGC 57.006 42.857 0.00 0.00 0.00 5.54
112 113 1.515081 TCCCTTGTTTTACTTCGGCG 58.485 50.000 0.00 0.00 0.00 6.46
115 116 2.033675 CCCTTGTTTTACTTCGGCGTTT 59.966 45.455 6.85 0.00 0.00 3.60
116 117 3.040099 CCTTGTTTTACTTCGGCGTTTG 58.960 45.455 6.85 0.58 0.00 2.93
119 120 3.427243 TGTTTTACTTCGGCGTTTGTTG 58.573 40.909 6.85 0.00 0.00 3.33
154 155 3.643199 GGAGAAAAATCCTCAGCCTCT 57.357 47.619 0.00 0.00 36.35 3.69
155 156 3.277715 GGAGAAAAATCCTCAGCCTCTG 58.722 50.000 0.00 0.00 36.35 3.35
156 157 2.682352 GAGAAAAATCCTCAGCCTCTGC 59.318 50.000 0.00 0.00 37.95 4.26
157 158 2.040813 AGAAAAATCCTCAGCCTCTGCA 59.959 45.455 0.00 0.00 41.13 4.41
158 159 2.822707 AAAATCCTCAGCCTCTGCAT 57.177 45.000 0.00 0.00 41.13 3.96
159 160 2.345124 AAATCCTCAGCCTCTGCATC 57.655 50.000 0.00 0.00 41.13 3.91
161 162 1.210538 ATCCTCAGCCTCTGCATCAA 58.789 50.000 0.00 0.00 41.13 2.57
162 163 1.210538 TCCTCAGCCTCTGCATCAAT 58.789 50.000 0.00 0.00 41.13 2.57
164 165 1.218763 CTCAGCCTCTGCATCAATCG 58.781 55.000 0.00 0.00 41.13 3.34
165 166 0.826062 TCAGCCTCTGCATCAATCGA 59.174 50.000 0.00 0.00 41.13 3.59
166 167 1.415289 TCAGCCTCTGCATCAATCGAT 59.585 47.619 0.00 0.00 41.13 3.59
176 177 3.466712 CATCAATCGATGTATGCAGCC 57.533 47.619 0.00 0.00 43.52 4.85
179 180 2.809696 TCAATCGATGTATGCAGCCATG 59.190 45.455 0.00 0.00 32.85 3.66
180 181 2.809696 CAATCGATGTATGCAGCCATGA 59.190 45.455 0.00 4.86 32.85 3.07
181 182 1.869774 TCGATGTATGCAGCCATGAC 58.130 50.000 5.68 0.00 32.85 3.06
182 183 1.138661 TCGATGTATGCAGCCATGACA 59.861 47.619 5.68 0.00 32.85 3.58
183 184 1.529865 CGATGTATGCAGCCATGACAG 59.470 52.381 5.68 0.00 32.85 3.51
184 185 1.266175 GATGTATGCAGCCATGACAGC 59.734 52.381 5.68 0.00 32.85 4.40
185 186 0.035247 TGTATGCAGCCATGACAGCA 60.035 50.000 0.83 0.83 41.73 4.41
186 187 4.678423 ATGCAGCCATGACAGCAT 57.322 50.000 6.06 6.06 42.42 3.79
187 188 1.679680 GTATGCAGCCATGACAGCATT 59.320 47.619 16.50 2.57 44.63 3.56
188 189 1.191535 ATGCAGCCATGACAGCATTT 58.808 45.000 6.06 0.00 44.63 2.32
189 190 0.245266 TGCAGCCATGACAGCATTTG 59.755 50.000 0.00 0.00 30.68 2.32
190 191 0.245539 GCAGCCATGACAGCATTTGT 59.754 50.000 0.00 0.00 44.55 2.83
192 193 2.333926 CAGCCATGACAGCATTTGTTG 58.666 47.619 0.00 0.00 41.05 3.33
193 194 2.029739 CAGCCATGACAGCATTTGTTGA 60.030 45.455 0.00 0.00 41.05 3.18
194 195 2.829720 AGCCATGACAGCATTTGTTGAT 59.170 40.909 0.00 0.00 41.05 2.57
197 198 4.679639 GCCATGACAGCATTTGTTGATGAT 60.680 41.667 0.00 0.00 44.68 2.45
198 199 5.416083 CCATGACAGCATTTGTTGATGATT 58.584 37.500 0.00 0.00 44.68 2.57
200 201 6.183360 CCATGACAGCATTTGTTGATGATTTG 60.183 38.462 0.00 0.00 44.68 2.32
201 202 5.845103 TGACAGCATTTGTTGATGATTTGT 58.155 33.333 1.20 0.00 44.68 2.83
203 204 5.232463 ACAGCATTTGTTGATGATTTGTCC 58.768 37.500 1.20 0.00 44.68 4.02
204 205 4.325204 CAGCATTTGTTGATGATTTGTCCG 59.675 41.667 0.00 0.00 44.68 4.79
205 206 3.613737 GCATTTGTTGATGATTTGTCCGG 59.386 43.478 0.00 0.00 0.00 5.14
207 208 5.621104 GCATTTGTTGATGATTTGTCCGGTA 60.621 40.000 0.00 0.00 0.00 4.02
210 211 5.621197 TGTTGATGATTTGTCCGGTAAAG 57.379 39.130 0.00 0.00 0.00 1.85
211 212 5.309638 TGTTGATGATTTGTCCGGTAAAGA 58.690 37.500 0.00 0.00 0.00 2.52
212 213 5.765677 TGTTGATGATTTGTCCGGTAAAGAA 59.234 36.000 0.00 0.00 0.00 2.52
213 214 6.263392 TGTTGATGATTTGTCCGGTAAAGAAA 59.737 34.615 0.00 0.00 0.00 2.52
214 215 6.885952 TGATGATTTGTCCGGTAAAGAAAA 57.114 33.333 0.00 0.00 0.00 2.29
215 216 7.278461 TGATGATTTGTCCGGTAAAGAAAAA 57.722 32.000 0.00 0.00 0.00 1.94
216 217 7.891561 TGATGATTTGTCCGGTAAAGAAAAAT 58.108 30.769 0.00 0.00 34.53 1.82
217 218 7.812191 TGATGATTTGTCCGGTAAAGAAAAATG 59.188 33.333 0.00 0.00 32.48 2.32
218 219 6.451393 TGATTTGTCCGGTAAAGAAAAATGG 58.549 36.000 0.00 0.00 32.48 3.16
219 220 6.265649 TGATTTGTCCGGTAAAGAAAAATGGA 59.734 34.615 0.00 0.00 32.48 3.41
220 221 6.466885 TTTGTCCGGTAAAGAAAAATGGAA 57.533 33.333 0.00 0.00 0.00 3.53
222 223 4.278919 TGTCCGGTAAAGAAAAATGGAACC 59.721 41.667 0.00 0.00 0.00 3.62
223 224 4.278919 GTCCGGTAAAGAAAAATGGAACCA 59.721 41.667 0.00 0.00 0.00 3.67
224 225 4.521256 TCCGGTAAAGAAAAATGGAACCAG 59.479 41.667 0.00 0.00 0.00 4.00
225 226 4.279922 CCGGTAAAGAAAAATGGAACCAGT 59.720 41.667 0.00 0.00 0.00 4.00
226 227 5.219633 CGGTAAAGAAAAATGGAACCAGTG 58.780 41.667 0.00 0.00 0.00 3.66
227 228 4.988540 GGTAAAGAAAAATGGAACCAGTGC 59.011 41.667 0.00 0.00 0.00 4.40
229 230 2.962859 AGAAAAATGGAACCAGTGCCT 58.037 42.857 0.00 0.00 0.00 4.75
231 232 3.711190 AGAAAAATGGAACCAGTGCCTTT 59.289 39.130 0.00 0.00 0.00 3.11
232 233 3.473923 AAAATGGAACCAGTGCCTTTG 57.526 42.857 0.00 0.00 0.00 2.77
233 234 1.341080 AATGGAACCAGTGCCTTTGG 58.659 50.000 0.00 0.00 41.60 3.28
238 239 2.807247 ACCAGTGCCTTTGGTTGAC 58.193 52.632 0.00 0.00 46.57 3.18
240 241 0.954452 CCAGTGCCTTTGGTTGACTC 59.046 55.000 0.00 0.00 0.00 3.36
241 242 0.588252 CAGTGCCTTTGGTTGACTCG 59.412 55.000 0.00 0.00 0.00 4.18
242 243 1.166531 AGTGCCTTTGGTTGACTCGC 61.167 55.000 0.00 0.00 0.00 5.03
244 245 0.394938 TGCCTTTGGTTGACTCGCTA 59.605 50.000 0.00 0.00 0.00 4.26
245 246 0.796927 GCCTTTGGTTGACTCGCTAC 59.203 55.000 0.00 0.00 0.00 3.58
246 247 1.876416 GCCTTTGGTTGACTCGCTACA 60.876 52.381 0.00 0.00 0.00 2.74
247 248 2.069273 CCTTTGGTTGACTCGCTACAG 58.931 52.381 0.00 0.00 0.00 2.74
248 249 2.548067 CCTTTGGTTGACTCGCTACAGT 60.548 50.000 0.00 0.00 0.00 3.55
249 250 2.433868 TTGGTTGACTCGCTACAGTC 57.566 50.000 1.39 1.39 42.90 3.51
250 251 0.601558 TGGTTGACTCGCTACAGTCC 59.398 55.000 5.22 0.00 42.04 3.85
251 252 0.601558 GGTTGACTCGCTACAGTCCA 59.398 55.000 5.22 0.00 42.04 4.02
252 253 1.402984 GGTTGACTCGCTACAGTCCAG 60.403 57.143 5.22 0.00 42.04 3.86
254 255 1.166129 TGACTCGCTACAGTCCAGTC 58.834 55.000 5.22 0.00 42.04 3.51
255 256 0.097325 GACTCGCTACAGTCCAGTCG 59.903 60.000 0.00 0.00 37.43 4.18
256 257 0.605860 ACTCGCTACAGTCCAGTCGT 60.606 55.000 0.00 0.00 0.00 4.34
257 258 0.097325 CTCGCTACAGTCCAGTCGTC 59.903 60.000 0.00 0.00 0.00 4.20
258 259 1.226046 CGCTACAGTCCAGTCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
259 260 1.874562 GCTACAGTCCAGTCGTCGT 59.125 57.895 0.00 0.00 0.00 4.34
260 261 0.179194 GCTACAGTCCAGTCGTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
261 262 0.094901 CTACAGTCCAGTCGTCGTCG 59.905 60.000 0.00 0.00 38.55 5.12
263 264 1.281960 CAGTCCAGTCGTCGTCGTT 59.718 57.895 1.33 0.00 38.33 3.85
264 265 0.997226 CAGTCCAGTCGTCGTCGTTG 60.997 60.000 1.33 2.59 38.33 4.10
266 267 0.995731 GTCCAGTCGTCGTCGTTGTC 60.996 60.000 1.33 0.00 38.33 3.18
267 268 2.073220 CCAGTCGTCGTCGTTGTCG 61.073 63.158 1.33 0.00 38.33 4.35
268 269 1.368493 CAGTCGTCGTCGTTGTCGT 60.368 57.895 1.33 0.00 38.33 4.34
269 270 1.083144 AGTCGTCGTCGTTGTCGTC 60.083 57.895 1.33 0.00 38.33 4.20
271 272 1.051718 GTCGTCGTCGTTGTCGTCTC 61.052 60.000 1.33 0.00 38.33 3.36
273 274 1.280746 GTCGTCGTTGTCGTCTCCA 59.719 57.895 0.00 0.00 38.33 3.86
274 275 0.317269 GTCGTCGTTGTCGTCTCCAA 60.317 55.000 0.00 0.00 38.33 3.53
276 277 1.001048 TCGTCGTTGTCGTCTCCAAAT 60.001 47.619 0.00 0.00 38.33 2.32
277 278 1.385743 CGTCGTTGTCGTCTCCAAATC 59.614 52.381 0.00 0.00 38.33 2.17
278 279 2.400399 GTCGTTGTCGTCTCCAAATCA 58.600 47.619 0.00 0.00 38.33 2.57
279 280 2.155155 GTCGTTGTCGTCTCCAAATCAC 59.845 50.000 0.00 0.00 38.33 3.06
280 281 2.035449 TCGTTGTCGTCTCCAAATCACT 59.965 45.455 0.00 0.00 38.33 3.41
281 282 2.155732 CGTTGTCGTCTCCAAATCACTG 59.844 50.000 0.00 0.00 0.00 3.66
282 283 1.795768 TGTCGTCTCCAAATCACTGC 58.204 50.000 0.00 0.00 0.00 4.40
283 284 1.344438 TGTCGTCTCCAAATCACTGCT 59.656 47.619 0.00 0.00 0.00 4.24
284 285 2.224281 TGTCGTCTCCAAATCACTGCTT 60.224 45.455 0.00 0.00 0.00 3.91
285 286 2.413453 GTCGTCTCCAAATCACTGCTTC 59.587 50.000 0.00 0.00 0.00 3.86
289 290 4.569943 GTCTCCAAATCACTGCTTCACTA 58.430 43.478 0.00 0.00 0.00 2.74
291 292 3.937706 CTCCAAATCACTGCTTCACTAGG 59.062 47.826 0.00 0.00 0.00 3.02
293 294 3.686726 CCAAATCACTGCTTCACTAGGTC 59.313 47.826 0.00 0.00 0.00 3.85
294 295 3.618690 AATCACTGCTTCACTAGGTCC 57.381 47.619 0.00 0.00 0.00 4.46
296 297 1.618837 TCACTGCTTCACTAGGTCCAC 59.381 52.381 0.00 0.00 0.00 4.02
297 298 1.344438 CACTGCTTCACTAGGTCCACA 59.656 52.381 0.00 0.00 0.00 4.17
299 300 0.317160 TGCTTCACTAGGTCCACACG 59.683 55.000 0.00 0.00 0.00 4.49
300 301 0.389948 GCTTCACTAGGTCCACACGG 60.390 60.000 0.00 0.00 0.00 4.94
301 302 0.966920 CTTCACTAGGTCCACACGGT 59.033 55.000 0.00 0.00 0.00 4.83
350 351 8.585471 ATTATATCCCCAAATCTACATGCAAG 57.415 34.615 0.00 0.00 0.00 4.01
351 352 3.017048 TCCCCAAATCTACATGCAAGG 57.983 47.619 0.00 0.00 0.00 3.61
352 353 1.410153 CCCCAAATCTACATGCAAGGC 59.590 52.381 0.00 0.00 0.00 4.35
354 355 1.745087 CCAAATCTACATGCAAGGCGT 59.255 47.619 0.00 0.00 0.00 5.68
361 362 2.281692 ATGCAAGGCGTGACTGCA 60.282 55.556 4.11 6.70 39.91 4.41
362 363 2.330372 ATGCAAGGCGTGACTGCAG 61.330 57.895 13.48 13.48 38.95 4.41
364 365 2.959357 GCAAGGCGTGACTGCAGTC 61.959 63.158 35.04 35.04 44.97 3.51
383 384 4.444838 CCGCGTCGTCATCCCCAA 62.445 66.667 4.92 0.00 0.00 4.12
384 385 2.433491 CGCGTCGTCATCCCCAAA 60.433 61.111 0.00 0.00 0.00 3.28
385 386 1.813753 CGCGTCGTCATCCCCAAAT 60.814 57.895 0.00 0.00 0.00 2.32
386 387 1.762222 CGCGTCGTCATCCCCAAATC 61.762 60.000 0.00 0.00 0.00 2.17
387 388 0.742990 GCGTCGTCATCCCCAAATCA 60.743 55.000 0.00 0.00 0.00 2.57
390 391 2.159156 CGTCGTCATCCCCAAATCACTA 60.159 50.000 0.00 0.00 0.00 2.74
393 394 3.132289 TCGTCATCCCCAAATCACTACTC 59.868 47.826 0.00 0.00 0.00 2.59
394 395 3.741388 CGTCATCCCCAAATCACTACTCC 60.741 52.174 0.00 0.00 0.00 3.85
395 396 2.434336 TCATCCCCAAATCACTACTCCG 59.566 50.000 0.00 0.00 0.00 4.63
396 397 0.539986 TCCCCAAATCACTACTCCGC 59.460 55.000 0.00 0.00 0.00 5.54
397 398 0.541863 CCCCAAATCACTACTCCGCT 59.458 55.000 0.00 0.00 0.00 5.52
399 400 1.009829 CCAAATCACTACTCCGCTGC 58.990 55.000 0.00 0.00 0.00 5.25
400 401 1.406069 CCAAATCACTACTCCGCTGCT 60.406 52.381 0.00 0.00 0.00 4.24
401 402 1.662629 CAAATCACTACTCCGCTGCTG 59.337 52.381 0.00 0.00 0.00 4.41
402 403 0.460987 AATCACTACTCCGCTGCTGC 60.461 55.000 5.34 5.34 0.00 5.25
404 405 1.518133 CACTACTCCGCTGCTGCTC 60.518 63.158 14.03 0.00 36.97 4.26
405 406 2.105930 CTACTCCGCTGCTGCTCC 59.894 66.667 14.03 0.00 36.97 4.70
407 408 1.954362 CTACTCCGCTGCTGCTCCTT 61.954 60.000 14.03 0.00 36.97 3.36
408 409 2.230994 TACTCCGCTGCTGCTCCTTG 62.231 60.000 14.03 0.00 36.97 3.61
410 411 3.123620 CCGCTGCTGCTCCTTGAC 61.124 66.667 14.03 0.00 36.97 3.18
411 412 3.123620 CGCTGCTGCTCCTTGACC 61.124 66.667 14.03 0.00 36.97 4.02
412 413 2.033141 GCTGCTGCTCCTTGACCA 59.967 61.111 8.53 0.00 36.03 4.02
413 414 2.039405 GCTGCTGCTCCTTGACCAG 61.039 63.158 8.53 0.00 36.03 4.00
417 418 1.739562 CTGCTCCTTGACCAGCGAC 60.740 63.158 0.00 0.00 38.59 5.19
418 419 2.811317 GCTCCTTGACCAGCGACG 60.811 66.667 0.00 0.00 0.00 5.12
419 420 2.962569 CTCCTTGACCAGCGACGA 59.037 61.111 0.00 0.00 0.00 4.20
420 421 1.444553 CTCCTTGACCAGCGACGAC 60.445 63.158 0.00 0.00 0.00 4.34
421 422 2.432628 CCTTGACCAGCGACGACC 60.433 66.667 0.00 0.00 0.00 4.79
422 423 2.338620 CTTGACCAGCGACGACCA 59.661 61.111 0.00 0.00 0.00 4.02
423 424 2.022129 CTTGACCAGCGACGACCAC 61.022 63.158 0.00 0.00 0.00 4.16
424 425 3.509137 TTGACCAGCGACGACCACC 62.509 63.158 0.00 0.00 0.00 4.61
456 457 3.687102 CCGTCGCACCACCCTGTA 61.687 66.667 0.00 0.00 0.00 2.74
462 463 1.376037 GCACCACCCTGTACTGAGC 60.376 63.158 0.60 0.00 0.00 4.26
480 482 2.058595 CACTGTAGTCCCCTCCCGG 61.059 68.421 0.00 0.00 0.00 5.73
524 545 3.889692 CAGCCACCCACCACCTGT 61.890 66.667 0.00 0.00 0.00 4.00
575 607 4.154195 CCGAATCACTTGGTTACTTCTTGG 59.846 45.833 0.00 0.00 0.00 3.61
576 608 4.378459 CGAATCACTTGGTTACTTCTTGGC 60.378 45.833 0.00 0.00 0.00 4.52
577 609 3.857157 TCACTTGGTTACTTCTTGGCT 57.143 42.857 0.00 0.00 0.00 4.75
578 610 3.740115 TCACTTGGTTACTTCTTGGCTC 58.260 45.455 0.00 0.00 0.00 4.70
579 611 3.391296 TCACTTGGTTACTTCTTGGCTCT 59.609 43.478 0.00 0.00 0.00 4.09
580 612 4.137543 CACTTGGTTACTTCTTGGCTCTT 58.862 43.478 0.00 0.00 0.00 2.85
581 613 4.023707 CACTTGGTTACTTCTTGGCTCTTG 60.024 45.833 0.00 0.00 0.00 3.02
598 630 0.038166 TTGCCCTCCTCATTCACCAC 59.962 55.000 0.00 0.00 0.00 4.16
604 636 0.896479 TCCTCATTCACCACCGACGA 60.896 55.000 0.00 0.00 0.00 4.20
607 639 1.740296 CATTCACCACCGACGACCC 60.740 63.158 0.00 0.00 0.00 4.46
608 640 3.291101 ATTCACCACCGACGACCCG 62.291 63.158 0.00 0.00 0.00 5.28
615 647 4.570663 CCGACGACCCGCATCCTC 62.571 72.222 0.00 0.00 0.00 3.71
616 648 4.570663 CGACGACCCGCATCCTCC 62.571 72.222 0.00 0.00 0.00 4.30
617 649 4.570663 GACGACCCGCATCCTCCG 62.571 72.222 0.00 0.00 0.00 4.63
619 651 4.570663 CGACCCGCATCCTCCGTC 62.571 72.222 0.00 0.00 0.00 4.79
620 652 3.148279 GACCCGCATCCTCCGTCT 61.148 66.667 0.00 0.00 0.00 4.18
621 653 3.140225 GACCCGCATCCTCCGTCTC 62.140 68.421 0.00 0.00 0.00 3.36
622 654 3.917760 CCCGCATCCTCCGTCTCC 61.918 72.222 0.00 0.00 0.00 3.71
624 656 4.271816 CGCATCCTCCGTCTCCCG 62.272 72.222 0.00 0.00 0.00 5.14
625 657 4.593864 GCATCCTCCGTCTCCCGC 62.594 72.222 0.00 0.00 34.38 6.13
626 658 3.917760 CATCCTCCGTCTCCCGCC 61.918 72.222 0.00 0.00 34.38 6.13
647 679 4.935495 CCACCACTGCCACGCACT 62.935 66.667 0.00 0.00 33.79 4.40
648 680 3.349006 CACCACTGCCACGCACTC 61.349 66.667 0.00 0.00 33.79 3.51
651 683 1.079197 CCACTGCCACGCACTCATA 60.079 57.895 0.00 0.00 33.79 2.15
652 684 1.361668 CCACTGCCACGCACTCATAC 61.362 60.000 0.00 0.00 33.79 2.39
653 685 0.390340 CACTGCCACGCACTCATACT 60.390 55.000 0.00 0.00 33.79 2.12
654 686 0.108615 ACTGCCACGCACTCATACTC 60.109 55.000 0.00 0.00 33.79 2.59
655 687 0.807667 CTGCCACGCACTCATACTCC 60.808 60.000 0.00 0.00 33.79 3.85
656 688 1.218047 GCCACGCACTCATACTCCA 59.782 57.895 0.00 0.00 0.00 3.86
657 689 1.084370 GCCACGCACTCATACTCCAC 61.084 60.000 0.00 0.00 0.00 4.02
658 690 0.460284 CCACGCACTCATACTCCACC 60.460 60.000 0.00 0.00 0.00 4.61
660 692 0.818296 ACGCACTCATACTCCACCTC 59.182 55.000 0.00 0.00 0.00 3.85
661 693 1.107114 CGCACTCATACTCCACCTCT 58.893 55.000 0.00 0.00 0.00 3.69
663 695 2.736719 CGCACTCATACTCCACCTCTTG 60.737 54.545 0.00 0.00 0.00 3.02
664 696 2.234908 GCACTCATACTCCACCTCTTGT 59.765 50.000 0.00 0.00 0.00 3.16
665 697 3.307059 GCACTCATACTCCACCTCTTGTT 60.307 47.826 0.00 0.00 0.00 2.83
667 699 3.265791 CTCATACTCCACCTCTTGTTGC 58.734 50.000 0.00 0.00 0.00 4.17
668 700 2.637382 TCATACTCCACCTCTTGTTGCA 59.363 45.455 0.00 0.00 0.00 4.08
670 702 1.131638 ACTCCACCTCTTGTTGCAGA 58.868 50.000 0.00 0.00 0.00 4.26
673 705 1.003580 TCCACCTCTTGTTGCAGATCC 59.996 52.381 0.00 0.00 0.00 3.36
675 707 0.036010 ACCTCTTGTTGCAGATCCGG 60.036 55.000 0.00 0.00 0.00 5.14
676 708 1.372087 CCTCTTGTTGCAGATCCGGC 61.372 60.000 0.00 0.17 0.00 6.13
677 709 0.674581 CTCTTGTTGCAGATCCGGCA 60.675 55.000 5.61 5.61 40.00 5.69
678 710 0.955428 TCTTGTTGCAGATCCGGCAC 60.955 55.000 9.02 6.04 41.75 5.01
681 713 0.955428 TGTTGCAGATCCGGCACTTC 60.955 55.000 9.02 4.68 41.75 3.01
682 714 1.377202 TTGCAGATCCGGCACTTCC 60.377 57.895 9.02 0.00 41.75 3.46
683 715 2.123248 TTGCAGATCCGGCACTTCCA 62.123 55.000 9.02 0.00 41.75 3.53
684 716 1.153086 GCAGATCCGGCACTTCCAT 60.153 57.895 0.00 0.00 34.01 3.41
685 717 1.162800 GCAGATCCGGCACTTCCATC 61.163 60.000 0.00 0.00 34.01 3.51
686 718 0.533755 CAGATCCGGCACTTCCATCC 60.534 60.000 0.00 0.00 34.01 3.51
688 720 0.815615 GATCCGGCACTTCCATCCAC 60.816 60.000 0.00 0.00 34.01 4.02
689 721 2.270874 ATCCGGCACTTCCATCCACC 62.271 60.000 0.00 0.00 34.01 4.61
690 722 2.671070 CGGCACTTCCATCCACCT 59.329 61.111 0.00 0.00 34.01 4.00
691 723 1.450312 CGGCACTTCCATCCACCTC 60.450 63.158 0.00 0.00 34.01 3.85
692 724 1.077429 GGCACTTCCATCCACCTCC 60.077 63.158 0.00 0.00 34.01 4.30
693 725 1.450312 GCACTTCCATCCACCTCCG 60.450 63.158 0.00 0.00 0.00 4.63
694 726 1.983224 CACTTCCATCCACCTCCGT 59.017 57.895 0.00 0.00 0.00 4.69
699 731 4.873129 CATCCACCTCCGTCCGCG 62.873 72.222 0.00 0.00 37.95 6.46
715 747 3.882326 CGGATCCAGGGCAGCCAT 61.882 66.667 15.19 1.92 0.00 4.40
717 749 2.114838 GATCCAGGGCAGCCATCC 59.885 66.667 15.19 0.00 0.00 3.51
718 750 2.697263 ATCCAGGGCAGCCATCCA 60.697 61.111 15.19 0.00 0.00 3.41
719 751 2.972892 GATCCAGGGCAGCCATCCAC 62.973 65.000 15.19 0.00 0.00 4.02
720 752 4.828296 CCAGGGCAGCCATCCACC 62.828 72.222 15.19 0.00 0.00 4.61
722 754 3.415087 AGGGCAGCCATCCACCTC 61.415 66.667 15.19 0.00 0.00 3.85
723 755 4.512914 GGGCAGCCATCCACCTCC 62.513 72.222 15.19 0.00 0.00 4.30
724 756 4.864334 GGCAGCCATCCACCTCCG 62.864 72.222 6.55 0.00 0.00 4.63
726 758 2.187946 CAGCCATCCACCTCCGTC 59.812 66.667 0.00 0.00 0.00 4.79
727 759 2.039624 AGCCATCCACCTCCGTCT 59.960 61.111 0.00 0.00 0.00 4.18
728 760 2.060980 AGCCATCCACCTCCGTCTC 61.061 63.158 0.00 0.00 0.00 3.36
729 761 2.808315 CCATCCACCTCCGTCTCG 59.192 66.667 0.00 0.00 0.00 4.04
730 762 1.753078 CCATCCACCTCCGTCTCGA 60.753 63.158 0.00 0.00 0.00 4.04
731 763 1.729470 CCATCCACCTCCGTCTCGAG 61.729 65.000 5.93 5.93 0.00 4.04
736 768 3.407657 CCTCCGTCTCGAGGTACG 58.592 66.667 17.18 17.18 43.94 3.67
737 769 2.708255 CTCCGTCTCGAGGTACGC 59.292 66.667 18.35 2.40 42.26 4.42
738 770 2.046988 TCCGTCTCGAGGTACGCA 60.047 61.111 18.35 3.81 42.26 5.24
739 771 1.437772 CTCCGTCTCGAGGTACGCAT 61.438 60.000 18.35 0.00 42.26 4.73
740 772 1.009900 CCGTCTCGAGGTACGCATC 60.010 63.158 18.35 0.00 42.26 3.91
742 774 1.654743 GTCTCGAGGTACGCATCGC 60.655 63.158 13.56 0.00 46.84 4.58
743 775 2.353607 CTCGAGGTACGCATCGCC 60.354 66.667 3.91 0.00 46.84 5.54
744 776 3.825833 CTCGAGGTACGCATCGCCC 62.826 68.421 3.91 0.00 46.84 6.13
748 780 3.259751 GGTACGCATCGCCCGTTC 61.260 66.667 0.61 0.00 39.88 3.95
749 781 3.613702 GTACGCATCGCCCGTTCG 61.614 66.667 0.61 0.00 39.88 3.95
753 785 2.813908 GCATCGCCCGTTCGACTT 60.814 61.111 0.00 0.00 41.62 3.01
754 786 2.799540 GCATCGCCCGTTCGACTTC 61.800 63.158 0.00 0.00 41.62 3.01
755 787 2.202570 ATCGCCCGTTCGACTTCG 60.203 61.111 0.00 0.00 41.62 3.79
759 791 4.712425 CCCGTTCGACTTCGCCGT 62.712 66.667 8.86 0.00 39.60 5.68
760 792 3.467119 CCGTTCGACTTCGCCGTG 61.467 66.667 8.86 0.00 39.60 4.94
761 793 4.117372 CGTTCGACTTCGCCGTGC 62.117 66.667 0.00 0.00 39.60 5.34
762 794 3.033764 GTTCGACTTCGCCGTGCA 61.034 61.111 0.00 0.00 39.60 4.57
764 796 2.591311 TTCGACTTCGCCGTGCAAC 61.591 57.895 0.00 0.00 39.60 4.17
765 797 3.334751 CGACTTCGCCGTGCAACA 61.335 61.111 0.00 0.00 35.74 3.33
768 800 2.249309 CTTCGCCGTGCAACACTG 59.751 61.111 0.00 0.00 35.74 3.66
777 809 2.502510 GCAACACTGCGGCATTCG 60.503 61.111 1.75 0.00 39.20 3.34
796 828 3.854669 ATTGCCTCGCCTCCTCCG 61.855 66.667 0.00 0.00 0.00 4.63
829 861 0.907704 AACCCCGTGCTCATACTCCA 60.908 55.000 0.00 0.00 0.00 3.86
878 915 4.925576 CCTCCGGACGCGGATTCG 62.926 72.222 12.47 8.37 37.43 3.34
922 959 1.689582 CCCTGTCCCTACCACCTCC 60.690 68.421 0.00 0.00 0.00 4.30
928 965 1.689582 CCCTACCACCTCCCCAGTC 60.690 68.421 0.00 0.00 0.00 3.51
933 970 4.394712 CACCTCCCCAGTCACGCC 62.395 72.222 0.00 0.00 0.00 5.68
939 976 4.394712 CCCAGTCACGCCTCACCC 62.395 72.222 0.00 0.00 0.00 4.61
949 986 1.737008 GCCTCACCCGTTCGACTTC 60.737 63.158 0.00 0.00 0.00 3.01
951 988 0.666577 CCTCACCCGTTCGACTTCAC 60.667 60.000 0.00 0.00 0.00 3.18
952 989 0.314302 CTCACCCGTTCGACTTCACT 59.686 55.000 0.00 0.00 0.00 3.41
959 996 1.954146 TTCGACTTCACTGCCGCAC 60.954 57.895 0.00 0.00 0.00 5.34
972 1009 3.112075 CGCACCACTGCAGTACCG 61.112 66.667 21.20 15.15 44.50 4.02
977 1014 2.167219 CCACTGCAGTACCGCATCG 61.167 63.158 21.20 4.15 42.06 3.84
985 1022 1.141019 GTACCGCATCGCTTCTCCA 59.859 57.895 0.00 0.00 0.00 3.86
988 1025 1.448540 CCGCATCGCTTCTCCAACT 60.449 57.895 0.00 0.00 0.00 3.16
995 3086 1.595993 CGCTTCTCCAACTCTCGGGA 61.596 60.000 0.00 0.00 0.00 5.14
1043 3138 1.001631 TGATGAAGCCCCTCCTCGA 59.998 57.895 0.00 0.00 0.00 4.04
1266 3361 2.250939 CGTGCGCCAGTTTGGAGAA 61.251 57.895 4.18 0.00 39.92 2.87
1313 3408 0.246086 AAGACTGCTCGAAGCCTCAG 59.754 55.000 4.73 1.77 41.51 3.35
1374 3472 1.534595 GAGCTCAAGGTTCTTGCACTG 59.465 52.381 9.40 0.00 0.00 3.66
1389 3487 0.109597 CACTGGAGGCAAATGAACGC 60.110 55.000 0.00 0.00 0.00 4.84
1418 3516 5.237779 TCAGGTACGTTTCAATCTGTTTTCC 59.762 40.000 0.00 0.00 0.00 3.13
1589 5855 3.634910 AGAGCAACCCGTTGTAAAACAAT 59.365 39.130 9.21 0.00 40.59 2.71
1694 5987 2.066262 CGGATGTCGGCAATATACACC 58.934 52.381 0.00 0.00 34.75 4.16
1718 6011 0.396435 CTGCTGGTCTTGTGGGTACA 59.604 55.000 0.00 0.00 34.31 2.90
1759 6052 7.918562 GGAGCTTGTTAATTTGTTGACAAGTAA 59.081 33.333 19.91 0.00 46.53 2.24
1817 6110 4.874396 GGATTTGGAGGACTAGGTAAAACG 59.126 45.833 0.00 0.00 0.00 3.60
1955 6266 1.409427 GGGATGAATCGGTCTTCTCGT 59.591 52.381 0.00 0.00 32.27 4.18
1989 6306 6.481644 GGTGGAAGACATTACTGATGATCTTC 59.518 42.308 15.27 15.27 43.26 2.87
2157 7103 5.804639 ACACAGTAGAGGCATACATTTTGA 58.195 37.500 3.21 0.00 0.00 2.69
2159 7105 7.564793 ACACAGTAGAGGCATACATTTTGATA 58.435 34.615 3.21 0.00 0.00 2.15
2274 7244 3.008485 CCTATGCCTTTGACCTAGGATCC 59.992 52.174 17.98 2.48 34.56 3.36
2375 10612 7.266922 TCCAGTGTGTTAAAATTGTACTTCC 57.733 36.000 0.00 0.00 0.00 3.46
2414 10652 8.655651 TTTATTTACCTTTTGCCTTTTCTGTG 57.344 30.769 0.00 0.00 0.00 3.66
2492 10731 7.517614 TTGGTTGCTGAAGTCAAATATTGTA 57.482 32.000 0.00 0.00 0.00 2.41
2717 13843 4.247258 TCATGCAATCTTTTTGTGGCATC 58.753 39.130 0.00 0.00 39.73 3.91
2732 13858 3.084039 TGGCATCTGGTCTTGAAATGTC 58.916 45.455 0.00 0.00 0.00 3.06
2737 13866 6.293845 GGCATCTGGTCTTGAAATGTCATATC 60.294 42.308 0.00 0.00 32.48 1.63
2741 13870 4.571984 TGGTCTTGAAATGTCATATCAGCG 59.428 41.667 0.00 0.00 32.48 5.18
2853 16161 2.490115 ACACGTGGAAACTTTTTGCAGA 59.510 40.909 21.57 0.00 0.00 4.26
2875 16183 9.929180 GCAGATACCTTATTATAGTTGATGACA 57.071 33.333 0.00 0.00 0.00 3.58
2975 16295 2.731976 CACGAGTAGAAAGTGTGGCTTC 59.268 50.000 0.00 0.00 36.17 3.86
3228 16560 3.593328 TCAGGAATTCTCTTGGAACCCAT 59.407 43.478 5.23 0.00 36.70 4.00
3234 16566 3.243359 TCTCTTGGAACCCATTTTGCT 57.757 42.857 0.00 0.00 31.53 3.91
3247 16579 3.554752 CCATTTTGCTGTAAACCCCACAG 60.555 47.826 0.00 0.00 45.08 3.66
3402 24053 3.135712 TGGCTGAAGGACTTGTCAGTAAA 59.864 43.478 3.08 0.00 42.72 2.01
3450 24101 7.408756 TGTTGCCAAGAGCTATTTTAATGAT 57.591 32.000 0.00 0.00 44.23 2.45
3454 24105 8.978874 TGCCAAGAGCTATTTTAATGATCTTA 57.021 30.769 0.00 0.00 44.23 2.10
3485 24136 3.054139 AGCTTGATTCAGCCTGGATGTAA 60.054 43.478 12.27 5.63 41.12 2.41
3570 24221 6.307318 GCAAGTGTGAAGAGCATAATTTTCTG 59.693 38.462 0.00 0.00 0.00 3.02
3584 24235 7.220300 GCATAATTTTCTGAGAGTTGAATGCAG 59.780 37.037 12.97 0.00 0.00 4.41
3586 24237 5.679734 TTTTCTGAGAGTTGAATGCAGTC 57.320 39.130 7.33 7.33 0.00 3.51
3594 24245 3.672808 AGTTGAATGCAGTCCTGAAGAG 58.327 45.455 12.27 0.00 0.00 2.85
3615 24266 1.146930 GGCAAGAGATCATGGCCGA 59.853 57.895 0.00 0.00 34.62 5.54
3662 24313 4.431416 TGAACTTCAGTAATGGTGGTGT 57.569 40.909 0.00 0.00 0.00 4.16
3673 24324 0.904649 TGGTGGTGTAGCAGATGAGG 59.095 55.000 0.00 0.00 32.05 3.86
3682 24333 2.502142 AGCAGATGAGGCAACATCAA 57.498 45.000 20.59 0.00 46.11 2.57
3685 24336 2.022195 CAGATGAGGCAACATCAAGGG 58.978 52.381 20.59 8.41 46.11 3.95
3686 24337 1.637553 AGATGAGGCAACATCAAGGGT 59.362 47.619 20.59 3.62 46.11 4.34
3769 24420 3.599343 CCCCCTCTTTTGCATTTTAAGC 58.401 45.455 0.00 0.00 0.00 3.09
3781 24432 3.445096 GCATTTTAAGCATCTCAGGGTGT 59.555 43.478 0.00 0.00 0.00 4.16
3788 24439 2.027377 AGCATCTCAGGGTGTTTCTCTG 60.027 50.000 0.00 0.00 45.46 3.35
3789 24440 2.289945 GCATCTCAGGGTGTTTCTCTGT 60.290 50.000 0.00 0.00 44.49 3.41
3802 24453 4.098807 TGTTTCTCTGTAAAAGTTTGGGCC 59.901 41.667 0.00 0.00 0.00 5.80
3808 24459 2.099427 TGTAAAAGTTTGGGCCACGAAC 59.901 45.455 5.23 9.71 42.73 3.95
3819 24473 1.818674 GGCCACGAACCAATTGATCTT 59.181 47.619 7.12 0.00 0.00 2.40
3838 24492 6.712095 TGATCTTACTGCTATTAGCCAATTGG 59.288 38.462 20.81 20.81 41.51 3.16
3840 24494 5.822519 TCTTACTGCTATTAGCCAATTGGTG 59.177 40.000 25.19 10.06 41.51 4.17
3866 24520 7.542130 GCAACTGAGGTATTTAAAGGTTTCATG 59.458 37.037 0.00 0.00 0.00 3.07
3868 24522 8.110860 ACTGAGGTATTTAAAGGTTTCATGTG 57.889 34.615 0.00 0.00 0.00 3.21
3869 24523 7.176690 ACTGAGGTATTTAAAGGTTTCATGTGG 59.823 37.037 0.00 0.00 0.00 4.17
3873 24527 8.116026 AGGTATTTAAAGGTTTCATGTGGAGAT 58.884 33.333 0.00 0.00 0.00 2.75
3898 24552 8.348285 TGAAATCAAACTCCCTACTAAAATGG 57.652 34.615 0.00 0.00 0.00 3.16
3931 24585 5.048083 GTGCATTTGGAGACACTGGATTTAA 60.048 40.000 0.00 0.00 42.67 1.52
3938 24592 5.183713 TGGAGACACTGGATTTAAATTGCAG 59.816 40.000 1.43 9.28 38.39 4.41
3939 24593 5.064441 AGACACTGGATTTAAATTGCAGC 57.936 39.130 14.48 0.00 36.13 5.25
3941 24595 4.813027 ACACTGGATTTAAATTGCAGCTG 58.187 39.130 10.11 10.11 36.13 4.24
3945 24599 2.554142 GATTTAAATTGCAGCTGGGGC 58.446 47.619 17.12 0.87 39.06 5.80
4067 24721 4.213564 TGCACACTTTGATTGGGTTTTT 57.786 36.364 0.00 0.00 0.00 1.94
4070 24724 4.764172 CACACTTTGATTGGGTTTTTCCA 58.236 39.130 0.00 0.00 38.11 3.53
4072 24726 4.469586 ACACTTTGATTGGGTTTTTCCAGT 59.530 37.500 0.00 0.00 38.17 4.00
4073 24727 5.659079 ACACTTTGATTGGGTTTTTCCAGTA 59.341 36.000 0.00 0.00 38.17 2.74
4079 24733 2.275134 GGGTTTTTCCAGTACCCGAA 57.725 50.000 0.00 0.00 41.93 4.30
4116 24770 0.039911 AGGGACTCGGTGAGCTTACT 59.960 55.000 8.70 0.00 32.04 2.24
4118 24772 1.677052 GGGACTCGGTGAGCTTACTAG 59.323 57.143 8.70 8.93 32.04 2.57
4129 24783 1.666700 AGCTTACTAGTCTGAGACGCG 59.333 52.381 3.53 3.53 37.67 6.01
4143 24797 0.520404 GACGCGTGGTTCTCTCAGTA 59.480 55.000 20.70 0.00 0.00 2.74
4145 24799 1.132643 ACGCGTGGTTCTCTCAGTATC 59.867 52.381 12.93 0.00 0.00 2.24
4149 24803 3.119459 GCGTGGTTCTCTCAGTATCTTCA 60.119 47.826 0.00 0.00 0.00 3.02
4156 24810 6.038936 GGTTCTCTCAGTATCTTCACTAGACC 59.961 46.154 0.00 0.00 35.19 3.85
4170 24824 2.873472 ACTAGACCGACTTGAGATAGCG 59.127 50.000 0.00 0.00 0.00 4.26
4171 24825 2.039818 AGACCGACTTGAGATAGCGA 57.960 50.000 0.00 0.00 0.00 4.93
4225 24879 3.930634 TGCATGACCTCAGATATCTCG 57.069 47.619 1.03 0.00 0.00 4.04
4227 24881 2.822561 GCATGACCTCAGATATCTCGGA 59.177 50.000 19.63 8.21 0.00 4.55
4237 24891 3.615937 CAGATATCTCGGAATCATTGGCG 59.384 47.826 1.03 0.00 0.00 5.69
4417 25074 1.221466 CGAGTTGCACGCTCTTGGAA 61.221 55.000 13.55 0.00 0.00 3.53
4430 25087 0.679321 CTTGGAAAGCTGCCCTCTCC 60.679 60.000 0.00 0.00 36.98 3.71
4450 25107 0.512952 CGTGCACCTCAGTTTACAGC 59.487 55.000 12.15 0.00 0.00 4.40
4657 25314 2.270986 GGCTTGGAGCACCTGTTGG 61.271 63.158 0.71 0.00 44.75 3.77
4668 25325 0.398318 ACCTGTTGGAGCCTCAAGAC 59.602 55.000 0.00 0.00 37.04 3.01
4719 25391 4.322567 GAAGAAGTGAAGGATGAAGCAGT 58.677 43.478 0.00 0.00 0.00 4.40
4720 25392 5.482908 GAAGAAGTGAAGGATGAAGCAGTA 58.517 41.667 0.00 0.00 0.00 2.74
4721 25393 5.083533 AGAAGTGAAGGATGAAGCAGTAG 57.916 43.478 0.00 0.00 0.00 2.57
4722 25394 3.258971 AGTGAAGGATGAAGCAGTAGC 57.741 47.619 0.00 0.00 42.56 3.58
4762 25434 1.341285 TGTAGGCAGCTGCATCCAAAT 60.341 47.619 37.63 16.96 44.36 2.32
4768 25440 0.749454 AGCTGCATCCAAATCGTCCC 60.749 55.000 1.02 0.00 0.00 4.46
4805 25477 6.737254 ACAATAGACCACGATAAAAACAGG 57.263 37.500 0.00 0.00 0.00 4.00
4831 25509 0.973632 TATGGCGTGACACCACTTCT 59.026 50.000 0.00 0.00 40.82 2.85
4922 25616 1.336440 CAAATCGTGGTGGTTCTGCAA 59.664 47.619 0.00 0.00 0.00 4.08
5102 25819 2.048222 CAGCTTCTGGACGCGGAA 60.048 61.111 12.47 2.85 0.00 4.30
5231 26471 2.905681 GGGAAATAGGACGGCGGT 59.094 61.111 13.24 0.00 0.00 5.68
5312 26571 3.121030 CCAAGCCGAGGAGTTGCG 61.121 66.667 0.00 0.00 0.00 4.85
5313 26572 2.048222 CAAGCCGAGGAGTTGCGA 60.048 61.111 0.00 0.00 0.00 5.10
5314 26573 2.048127 AAGCCGAGGAGTTGCGAC 60.048 61.111 0.00 0.00 0.00 5.19
5315 26574 2.867855 AAGCCGAGGAGTTGCGACA 61.868 57.895 6.90 0.00 0.00 4.35
5316 26575 2.771763 AAGCCGAGGAGTTGCGACAG 62.772 60.000 6.90 0.00 0.00 3.51
5317 26576 2.651361 CCGAGGAGTTGCGACAGT 59.349 61.111 6.90 0.00 0.00 3.55
5319 26578 1.284982 CCGAGGAGTTGCGACAGTTG 61.285 60.000 6.90 0.00 0.00 3.16
5320 26579 1.284982 CGAGGAGTTGCGACAGTTGG 61.285 60.000 6.90 0.00 0.00 3.77
5321 26580 0.249911 GAGGAGTTGCGACAGTTGGT 60.250 55.000 6.90 0.00 0.00 3.67
5322 26581 0.249911 AGGAGTTGCGACAGTTGGTC 60.250 55.000 6.90 0.00 43.36 4.02
5334 26622 3.209410 ACAGTTGGTCAAGCTTCTTCAG 58.791 45.455 0.00 0.00 0.00 3.02
5412 26713 0.249911 AGGCTGTGGACGTTGAAGTC 60.250 55.000 0.00 0.00 40.25 3.01
5430 26731 4.386867 AGTCCTATTCAGCGAAATTCGA 57.613 40.909 20.38 0.00 43.74 3.71
5431 26732 4.950050 AGTCCTATTCAGCGAAATTCGAT 58.050 39.130 20.38 10.52 43.74 3.59
5468 26769 1.263356 AATTGCTTGCTGCTCACCAT 58.737 45.000 0.00 0.00 43.37 3.55
5525 26832 6.995686 TGTGTTCAAAGTTAAGCAATAGAGGA 59.004 34.615 0.00 0.00 0.00 3.71
5573 26880 7.089249 AGAATCGCGAACAAACAAATTAAAC 57.911 32.000 15.24 0.00 0.00 2.01
5576 26883 5.570344 TCGCGAACAAACAAATTAAACTGA 58.430 33.333 6.20 0.00 0.00 3.41
5631 26938 8.594881 AATTGCGTATTCATAGTTCTTCCTAG 57.405 34.615 0.00 0.00 0.00 3.02
5653 26963 4.219288 AGAATGATGTGGTTCCAAAAGAGC 59.781 41.667 0.00 0.00 0.00 4.09
5684 26994 5.616270 TGCTGTAATCTTGTGGTGTTTCTA 58.384 37.500 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.204604 TCGAAATCGCAATAGTTAGTCCATTA 58.795 34.615 0.00 0.00 39.60 1.90
5 6 9.910511 TTTAAATCGAAATCGCAATAGTTAGTC 57.089 29.630 0.00 0.00 39.60 2.59
34 35 4.052159 TGTTGTGAAATCGCAATGGTTT 57.948 36.364 12.07 0.00 46.37 3.27
35 36 3.724508 TGTTGTGAAATCGCAATGGTT 57.275 38.095 12.07 0.00 46.37 3.67
36 37 3.005684 ACATGTTGTGAAATCGCAATGGT 59.994 39.130 12.07 8.32 46.37 3.55
37 38 3.577667 ACATGTTGTGAAATCGCAATGG 58.422 40.909 12.07 7.80 46.37 3.16
38 39 4.936974 CAACATGTTGTGAAATCGCAATG 58.063 39.130 27.08 9.88 46.37 2.82
51 52 6.035866 ACACTGCAATTTTGTACAACATGTTG 59.964 34.615 32.03 32.03 45.58 3.33
53 54 5.659463 ACACTGCAATTTTGTACAACATGT 58.341 33.333 8.07 6.60 0.00 3.21
54 55 7.691430 TTACACTGCAATTTTGTACAACATG 57.309 32.000 8.07 8.74 0.00 3.21
55 56 8.885494 AATTACACTGCAATTTTGTACAACAT 57.115 26.923 8.07 4.37 0.00 2.71
70 71 9.899226 GGGAAATAATCAAGATAATTACACTGC 57.101 33.333 0.00 0.00 0.00 4.40
83 84 9.341899 CGAAGTAAAACAAGGGAAATAATCAAG 57.658 33.333 0.00 0.00 0.00 3.02
84 85 8.301002 CCGAAGTAAAACAAGGGAAATAATCAA 58.699 33.333 0.00 0.00 0.00 2.57
85 86 7.576098 GCCGAAGTAAAACAAGGGAAATAATCA 60.576 37.037 0.00 0.00 0.00 2.57
86 87 6.750501 GCCGAAGTAAAACAAGGGAAATAATC 59.249 38.462 0.00 0.00 0.00 1.75
87 88 6.624204 CGCCGAAGTAAAACAAGGGAAATAAT 60.624 38.462 0.00 0.00 0.00 1.28
88 89 5.335035 CGCCGAAGTAAAACAAGGGAAATAA 60.335 40.000 0.00 0.00 0.00 1.40
89 90 4.154556 CGCCGAAGTAAAACAAGGGAAATA 59.845 41.667 0.00 0.00 0.00 1.40
90 91 3.057806 CGCCGAAGTAAAACAAGGGAAAT 60.058 43.478 0.00 0.00 0.00 2.17
92 93 1.874872 CGCCGAAGTAAAACAAGGGAA 59.125 47.619 0.00 0.00 0.00 3.97
93 94 1.202675 ACGCCGAAGTAAAACAAGGGA 60.203 47.619 0.00 0.00 0.00 4.20
94 95 1.232119 ACGCCGAAGTAAAACAAGGG 58.768 50.000 0.00 0.00 0.00 3.95
95 96 3.040099 CAAACGCCGAAGTAAAACAAGG 58.960 45.455 0.00 0.00 0.00 3.61
96 97 3.687200 ACAAACGCCGAAGTAAAACAAG 58.313 40.909 0.00 0.00 0.00 3.16
97 98 3.761311 ACAAACGCCGAAGTAAAACAA 57.239 38.095 0.00 0.00 0.00 2.83
99 100 3.682921 TCAACAAACGCCGAAGTAAAAC 58.317 40.909 0.00 0.00 0.00 2.43
100 101 4.555348 ATCAACAAACGCCGAAGTAAAA 57.445 36.364 0.00 0.00 0.00 1.52
101 102 4.555348 AATCAACAAACGCCGAAGTAAA 57.445 36.364 0.00 0.00 0.00 2.01
103 104 4.555348 AAAATCAACAAACGCCGAAGTA 57.445 36.364 0.00 0.00 0.00 2.24
104 105 3.430333 AAAATCAACAAACGCCGAAGT 57.570 38.095 0.00 0.00 0.00 3.01
126 127 7.290014 AGGCTGAGGATTTTTCTCCTTTTAAAA 59.710 33.333 0.00 0.00 45.89 1.52
127 128 6.782494 AGGCTGAGGATTTTTCTCCTTTTAAA 59.218 34.615 0.00 0.00 45.89 1.52
128 129 6.314917 AGGCTGAGGATTTTTCTCCTTTTAA 58.685 36.000 0.00 0.00 45.89 1.52
129 130 5.892348 AGGCTGAGGATTTTTCTCCTTTTA 58.108 37.500 0.00 0.00 45.89 1.52
130 131 4.745351 AGGCTGAGGATTTTTCTCCTTTT 58.255 39.130 0.00 0.00 45.89 2.27
131 132 4.043938 AGAGGCTGAGGATTTTTCTCCTTT 59.956 41.667 0.00 0.00 45.89 3.11
132 133 3.591079 AGAGGCTGAGGATTTTTCTCCTT 59.409 43.478 0.00 0.00 45.89 3.36
133 134 6.685968 GCAGAGGCTGAGGATTTTTCTCCT 62.686 50.000 0.00 0.00 42.00 3.69
134 135 3.277715 CAGAGGCTGAGGATTTTTCTCC 58.722 50.000 0.00 0.00 32.44 3.71
136 137 2.040813 TGCAGAGGCTGAGGATTTTTCT 59.959 45.455 0.00 0.00 41.91 2.52
137 138 2.440409 TGCAGAGGCTGAGGATTTTTC 58.560 47.619 0.00 0.00 41.91 2.29
138 139 2.592102 TGCAGAGGCTGAGGATTTTT 57.408 45.000 0.00 0.00 41.91 1.94
139 140 2.025605 TGATGCAGAGGCTGAGGATTTT 60.026 45.455 0.00 0.00 41.91 1.82
140 141 1.562942 TGATGCAGAGGCTGAGGATTT 59.437 47.619 0.00 0.00 41.91 2.17
141 142 1.210538 TGATGCAGAGGCTGAGGATT 58.789 50.000 0.00 0.00 41.91 3.01
142 143 1.210538 TTGATGCAGAGGCTGAGGAT 58.789 50.000 0.00 0.00 41.91 3.24
144 145 1.595466 GATTGATGCAGAGGCTGAGG 58.405 55.000 0.00 0.00 41.91 3.86
145 146 1.202498 TCGATTGATGCAGAGGCTGAG 60.202 52.381 0.00 0.00 41.91 3.35
146 147 0.826062 TCGATTGATGCAGAGGCTGA 59.174 50.000 0.00 0.00 41.91 4.26
147 148 1.531578 CATCGATTGATGCAGAGGCTG 59.468 52.381 10.05 0.00 45.06 4.85
148 149 1.880271 CATCGATTGATGCAGAGGCT 58.120 50.000 10.05 0.00 45.06 4.58
157 158 3.130280 TGGCTGCATACATCGATTGAT 57.870 42.857 0.50 0.00 34.28 2.57
158 159 2.618442 TGGCTGCATACATCGATTGA 57.382 45.000 0.50 0.00 0.00 2.57
159 160 2.809696 TCATGGCTGCATACATCGATTG 59.190 45.455 0.50 0.00 0.00 2.67
161 162 2.224354 TGTCATGGCTGCATACATCGAT 60.224 45.455 0.50 0.00 0.00 3.59
162 163 1.138661 TGTCATGGCTGCATACATCGA 59.861 47.619 0.50 0.00 0.00 3.59
164 165 1.266175 GCTGTCATGGCTGCATACATC 59.734 52.381 22.52 0.00 34.18 3.06
165 166 1.315690 GCTGTCATGGCTGCATACAT 58.684 50.000 22.52 0.00 34.18 2.29
166 167 0.035247 TGCTGTCATGGCTGCATACA 60.035 50.000 25.65 5.34 38.17 2.29
167 168 1.315690 ATGCTGTCATGGCTGCATAC 58.684 50.000 34.58 7.16 46.94 2.39
169 170 4.678423 ATGCTGTCATGGCTGCAT 57.322 50.000 31.60 31.60 45.07 3.96
170 171 0.245266 CAAATGCTGTCATGGCTGCA 59.755 50.000 30.18 30.18 44.93 4.41
171 172 0.245539 ACAAATGCTGTCATGGCTGC 59.754 50.000 20.95 20.95 29.87 5.25
172 173 2.029739 TCAACAAATGCTGTCATGGCTG 60.030 45.455 0.00 0.00 37.23 4.85
173 174 2.241160 TCAACAAATGCTGTCATGGCT 58.759 42.857 0.00 0.00 37.23 4.75
174 175 2.728690 TCAACAAATGCTGTCATGGC 57.271 45.000 0.00 0.00 37.23 4.40
175 176 4.443913 TCATCAACAAATGCTGTCATGG 57.556 40.909 0.00 0.00 37.23 3.66
176 177 6.367695 ACAAATCATCAACAAATGCTGTCATG 59.632 34.615 0.00 0.00 37.23 3.07
179 180 5.346822 GGACAAATCATCAACAAATGCTGTC 59.653 40.000 0.00 0.00 37.23 3.51
180 181 5.232463 GGACAAATCATCAACAAATGCTGT 58.768 37.500 0.00 0.00 41.27 4.40
181 182 4.325204 CGGACAAATCATCAACAAATGCTG 59.675 41.667 0.00 0.00 0.00 4.41
182 183 4.487948 CGGACAAATCATCAACAAATGCT 58.512 39.130 0.00 0.00 0.00 3.79
183 184 3.613737 CCGGACAAATCATCAACAAATGC 59.386 43.478 0.00 0.00 0.00 3.56
184 185 4.808558 ACCGGACAAATCATCAACAAATG 58.191 39.130 9.46 0.00 0.00 2.32
185 186 6.582677 TTACCGGACAAATCATCAACAAAT 57.417 33.333 9.46 0.00 0.00 2.32
186 187 6.263392 TCTTTACCGGACAAATCATCAACAAA 59.737 34.615 9.46 0.00 0.00 2.83
187 188 5.765677 TCTTTACCGGACAAATCATCAACAA 59.234 36.000 9.46 0.00 0.00 2.83
188 189 5.309638 TCTTTACCGGACAAATCATCAACA 58.690 37.500 9.46 0.00 0.00 3.33
189 190 5.873179 TCTTTACCGGACAAATCATCAAC 57.127 39.130 9.46 0.00 0.00 3.18
190 191 6.885952 TTTCTTTACCGGACAAATCATCAA 57.114 33.333 9.46 0.00 0.00 2.57
192 193 7.275560 CCATTTTTCTTTACCGGACAAATCATC 59.724 37.037 9.46 0.00 0.00 2.92
193 194 7.039363 TCCATTTTTCTTTACCGGACAAATCAT 60.039 33.333 9.46 0.00 0.00 2.45
194 195 6.265649 TCCATTTTTCTTTACCGGACAAATCA 59.734 34.615 9.46 0.00 0.00 2.57
197 198 6.274579 GTTCCATTTTTCTTTACCGGACAAA 58.725 36.000 9.46 7.17 0.00 2.83
198 199 5.221283 GGTTCCATTTTTCTTTACCGGACAA 60.221 40.000 9.46 0.00 0.00 3.18
200 201 4.278919 TGGTTCCATTTTTCTTTACCGGAC 59.721 41.667 9.46 0.00 0.00 4.79
201 202 4.471548 TGGTTCCATTTTTCTTTACCGGA 58.528 39.130 9.46 0.00 0.00 5.14
203 204 5.219633 CACTGGTTCCATTTTTCTTTACCG 58.780 41.667 0.00 0.00 0.00 4.02
204 205 4.988540 GCACTGGTTCCATTTTTCTTTACC 59.011 41.667 0.00 0.00 0.00 2.85
205 206 4.988540 GGCACTGGTTCCATTTTTCTTTAC 59.011 41.667 0.00 0.00 0.00 2.01
207 208 3.711190 AGGCACTGGTTCCATTTTTCTTT 59.289 39.130 0.00 0.00 37.18 2.52
210 211 3.751479 AAGGCACTGGTTCCATTTTTC 57.249 42.857 0.00 0.00 40.86 2.29
211 212 3.433456 CCAAAGGCACTGGTTCCATTTTT 60.433 43.478 0.00 0.00 40.86 1.94
212 213 2.104622 CCAAAGGCACTGGTTCCATTTT 59.895 45.455 0.00 0.00 40.86 1.82
213 214 1.693606 CCAAAGGCACTGGTTCCATTT 59.306 47.619 0.00 0.00 40.86 2.32
214 215 1.341080 CCAAAGGCACTGGTTCCATT 58.659 50.000 0.00 0.00 40.86 3.16
215 216 0.188342 ACCAAAGGCACTGGTTCCAT 59.812 50.000 4.79 0.00 45.13 3.41
216 217 1.618030 ACCAAAGGCACTGGTTCCA 59.382 52.632 4.79 0.00 45.13 3.53
217 218 4.599036 ACCAAAGGCACTGGTTCC 57.401 55.556 4.79 0.00 45.13 3.62
222 223 0.588252 CGAGTCAACCAAAGGCACTG 59.412 55.000 0.00 0.00 40.86 3.66
224 225 1.166531 AGCGAGTCAACCAAAGGCAC 61.167 55.000 0.00 0.00 0.00 5.01
225 226 0.394938 TAGCGAGTCAACCAAAGGCA 59.605 50.000 0.00 0.00 0.00 4.75
226 227 0.796927 GTAGCGAGTCAACCAAAGGC 59.203 55.000 0.00 0.00 0.00 4.35
227 228 2.069273 CTGTAGCGAGTCAACCAAAGG 58.931 52.381 0.00 0.00 0.00 3.11
229 230 2.547218 GGACTGTAGCGAGTCAACCAAA 60.547 50.000 13.43 0.00 43.70 3.28
231 232 0.601558 GGACTGTAGCGAGTCAACCA 59.398 55.000 13.43 0.00 43.70 3.67
232 233 0.601558 TGGACTGTAGCGAGTCAACC 59.398 55.000 13.43 0.00 43.70 3.77
233 234 1.269998 ACTGGACTGTAGCGAGTCAAC 59.730 52.381 13.43 1.26 43.70 3.18
234 235 1.540267 GACTGGACTGTAGCGAGTCAA 59.460 52.381 13.43 3.89 43.70 3.18
236 237 0.097325 CGACTGGACTGTAGCGAGTC 59.903 60.000 5.32 5.32 41.55 3.36
238 239 0.097325 GACGACTGGACTGTAGCGAG 59.903 60.000 0.00 0.00 0.00 5.03
240 241 1.226046 CGACGACTGGACTGTAGCG 60.226 63.158 0.00 0.00 0.00 4.26
241 242 0.179194 GACGACGACTGGACTGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
242 243 0.094901 CGACGACGACTGGACTGTAG 59.905 60.000 0.00 0.00 42.66 2.74
244 245 1.442526 AACGACGACGACTGGACTGT 61.443 55.000 15.32 0.00 42.66 3.55
245 246 0.997226 CAACGACGACGACTGGACTG 60.997 60.000 15.32 0.00 42.66 3.51
246 247 1.281960 CAACGACGACGACTGGACT 59.718 57.895 15.32 0.00 42.66 3.85
247 248 0.995731 GACAACGACGACGACTGGAC 60.996 60.000 15.32 6.17 42.66 4.02
248 249 1.280746 GACAACGACGACGACTGGA 59.719 57.895 15.32 0.00 42.66 3.86
249 250 2.073220 CGACAACGACGACGACTGG 61.073 63.158 15.32 2.77 42.66 4.00
250 251 1.319010 GACGACAACGACGACGACTG 61.319 60.000 15.32 12.67 42.66 3.51
251 252 1.083144 GACGACAACGACGACGACT 60.083 57.895 15.32 0.00 42.66 4.18
252 253 1.051718 GAGACGACAACGACGACGAC 61.052 60.000 15.32 0.00 42.66 4.34
254 255 1.791283 GGAGACGACAACGACGACG 60.791 63.158 5.58 5.58 42.66 5.12
255 256 0.317269 TTGGAGACGACAACGACGAC 60.317 55.000 0.00 0.00 42.66 4.34
256 257 0.381445 TTTGGAGACGACAACGACGA 59.619 50.000 0.00 0.00 42.66 4.20
257 258 1.385743 GATTTGGAGACGACAACGACG 59.614 52.381 0.00 0.00 42.66 5.12
258 259 2.155155 GTGATTTGGAGACGACAACGAC 59.845 50.000 0.00 0.00 42.66 4.34
259 260 2.035449 AGTGATTTGGAGACGACAACGA 59.965 45.455 0.00 0.00 42.66 3.85
260 261 2.155732 CAGTGATTTGGAGACGACAACG 59.844 50.000 0.00 0.00 45.75 4.10
261 262 2.096218 GCAGTGATTTGGAGACGACAAC 60.096 50.000 0.00 0.00 0.00 3.32
263 264 1.344438 AGCAGTGATTTGGAGACGACA 59.656 47.619 0.00 0.00 0.00 4.35
264 265 2.086054 AGCAGTGATTTGGAGACGAC 57.914 50.000 0.00 0.00 0.00 4.34
266 267 2.158449 GTGAAGCAGTGATTTGGAGACG 59.842 50.000 0.00 0.00 0.00 4.18
267 268 3.406764 AGTGAAGCAGTGATTTGGAGAC 58.593 45.455 0.00 0.00 0.00 3.36
268 269 3.777106 AGTGAAGCAGTGATTTGGAGA 57.223 42.857 0.00 0.00 0.00 3.71
269 270 3.937706 CCTAGTGAAGCAGTGATTTGGAG 59.062 47.826 0.00 0.00 0.00 3.86
271 272 3.679389 ACCTAGTGAAGCAGTGATTTGG 58.321 45.455 0.00 0.00 0.00 3.28
273 274 3.327757 TGGACCTAGTGAAGCAGTGATTT 59.672 43.478 0.00 0.00 0.00 2.17
274 275 2.906389 TGGACCTAGTGAAGCAGTGATT 59.094 45.455 0.00 0.00 0.00 2.57
276 277 1.618837 GTGGACCTAGTGAAGCAGTGA 59.381 52.381 0.00 0.00 0.00 3.41
277 278 1.344438 TGTGGACCTAGTGAAGCAGTG 59.656 52.381 0.00 0.00 0.00 3.66
278 279 1.344763 GTGTGGACCTAGTGAAGCAGT 59.655 52.381 0.00 0.00 0.00 4.40
279 280 1.670087 CGTGTGGACCTAGTGAAGCAG 60.670 57.143 0.00 0.00 0.00 4.24
280 281 0.317160 CGTGTGGACCTAGTGAAGCA 59.683 55.000 0.00 0.00 0.00 3.91
281 282 0.389948 CCGTGTGGACCTAGTGAAGC 60.390 60.000 0.00 0.00 37.49 3.86
282 283 0.966920 ACCGTGTGGACCTAGTGAAG 59.033 55.000 0.00 0.00 39.21 3.02
283 284 1.069513 CAACCGTGTGGACCTAGTGAA 59.930 52.381 0.00 0.00 39.21 3.18
284 285 0.677288 CAACCGTGTGGACCTAGTGA 59.323 55.000 0.00 0.00 39.21 3.41
285 286 0.320421 CCAACCGTGTGGACCTAGTG 60.320 60.000 0.00 0.00 41.65 2.74
289 290 2.508928 CACCAACCGTGTGGACCT 59.491 61.111 8.52 0.00 41.65 3.85
294 295 2.190841 GGTTCCCACCAACCGTGTG 61.191 63.158 0.00 0.00 43.61 3.82
310 311 9.722317 TGGGGATATAATAATCAACAAAAAGGT 57.278 29.630 0.00 0.00 0.00 3.50
325 326 7.616935 CCTTGCATGTAGATTTGGGGATATAAT 59.383 37.037 0.00 0.00 0.00 1.28
326 327 6.947733 CCTTGCATGTAGATTTGGGGATATAA 59.052 38.462 0.00 0.00 0.00 0.98
327 328 6.484288 CCTTGCATGTAGATTTGGGGATATA 58.516 40.000 0.00 0.00 0.00 0.86
328 329 5.327732 CCTTGCATGTAGATTTGGGGATAT 58.672 41.667 0.00 0.00 0.00 1.63
329 330 4.728772 CCTTGCATGTAGATTTGGGGATA 58.271 43.478 0.00 0.00 0.00 2.59
330 331 3.569491 CCTTGCATGTAGATTTGGGGAT 58.431 45.455 0.00 0.00 0.00 3.85
332 333 1.410153 GCCTTGCATGTAGATTTGGGG 59.590 52.381 0.00 0.00 0.00 4.96
333 334 1.066002 CGCCTTGCATGTAGATTTGGG 59.934 52.381 0.00 0.00 0.00 4.12
334 335 1.745087 ACGCCTTGCATGTAGATTTGG 59.255 47.619 0.00 0.00 0.00 3.28
335 336 2.419673 TCACGCCTTGCATGTAGATTTG 59.580 45.455 0.00 0.00 0.00 2.32
338 339 1.208052 AGTCACGCCTTGCATGTAGAT 59.792 47.619 0.00 0.00 0.00 1.98
339 340 0.608130 AGTCACGCCTTGCATGTAGA 59.392 50.000 0.00 0.00 0.00 2.59
341 342 1.298157 GCAGTCACGCCTTGCATGTA 61.298 55.000 0.00 0.00 37.75 2.29
343 344 2.177531 GCAGTCACGCCTTGCATG 59.822 61.111 0.00 0.00 37.75 4.06
344 345 2.281692 TGCAGTCACGCCTTGCAT 60.282 55.556 0.00 0.00 42.41 3.96
346 347 2.959357 GACTGCAGTCACGCCTTGC 61.959 63.158 36.23 11.06 44.18 4.01
347 348 2.661566 CGACTGCAGTCACGCCTTG 61.662 63.158 38.31 21.15 44.99 3.61
348 349 2.356313 CGACTGCAGTCACGCCTT 60.356 61.111 38.31 8.31 44.99 4.35
361 362 4.831307 GATGACGACGCGGCGACT 62.831 66.667 44.35 24.70 37.93 4.18
366 367 3.943479 TTTGGGGATGACGACGCGG 62.943 63.158 12.47 0.00 0.00 6.46
368 369 0.742990 TGATTTGGGGATGACGACGC 60.743 55.000 0.00 0.00 0.00 5.19
369 370 1.006832 GTGATTTGGGGATGACGACG 58.993 55.000 0.00 0.00 0.00 5.12
370 371 2.403252 AGTGATTTGGGGATGACGAC 57.597 50.000 0.00 0.00 0.00 4.34
372 373 3.458189 GAGTAGTGATTTGGGGATGACG 58.542 50.000 0.00 0.00 0.00 4.35
373 374 3.741388 CGGAGTAGTGATTTGGGGATGAC 60.741 52.174 0.00 0.00 0.00 3.06
374 375 2.434336 CGGAGTAGTGATTTGGGGATGA 59.566 50.000 0.00 0.00 0.00 2.92
375 376 2.838736 CGGAGTAGTGATTTGGGGATG 58.161 52.381 0.00 0.00 0.00 3.51
376 377 1.141053 GCGGAGTAGTGATTTGGGGAT 59.859 52.381 0.00 0.00 0.00 3.85
379 380 1.656652 CAGCGGAGTAGTGATTTGGG 58.343 55.000 0.00 0.00 0.00 4.12
380 381 1.009829 GCAGCGGAGTAGTGATTTGG 58.990 55.000 0.00 0.00 0.00 3.28
383 384 0.460987 GCAGCAGCGGAGTAGTGATT 60.461 55.000 0.00 0.00 0.00 2.57
384 385 1.142748 GCAGCAGCGGAGTAGTGAT 59.857 57.895 0.00 0.00 0.00 3.06
385 386 2.573869 GCAGCAGCGGAGTAGTGA 59.426 61.111 0.00 0.00 0.00 3.41
395 396 2.033141 TGGTCAAGGAGCAGCAGC 59.967 61.111 0.00 0.00 35.04 5.25
400 401 2.343758 GTCGCTGGTCAAGGAGCA 59.656 61.111 0.00 0.00 37.74 4.26
401 402 2.811317 CGTCGCTGGTCAAGGAGC 60.811 66.667 0.00 0.00 0.00 4.70
402 403 1.444553 GTCGTCGCTGGTCAAGGAG 60.445 63.158 0.00 0.00 0.00 3.69
404 405 2.432628 GGTCGTCGCTGGTCAAGG 60.433 66.667 0.00 0.00 0.00 3.61
405 406 2.022129 GTGGTCGTCGCTGGTCAAG 61.022 63.158 0.00 0.00 0.00 3.02
407 408 3.986006 GGTGGTCGTCGCTGGTCA 61.986 66.667 0.00 0.00 0.00 4.02
408 409 3.222354 AAGGTGGTCGTCGCTGGTC 62.222 63.158 0.00 0.00 0.00 4.02
410 411 2.432628 GAAGGTGGTCGTCGCTGG 60.433 66.667 0.00 0.00 0.00 4.85
411 412 1.444553 GAGAAGGTGGTCGTCGCTG 60.445 63.158 0.00 0.00 0.00 5.18
412 413 2.637383 GGAGAAGGTGGTCGTCGCT 61.637 63.158 0.00 0.00 0.00 4.93
413 414 2.126031 GGAGAAGGTGGTCGTCGC 60.126 66.667 0.00 0.00 0.00 5.19
414 415 2.572284 GGGAGAAGGTGGTCGTCG 59.428 66.667 0.00 0.00 0.00 5.12
417 418 2.678934 TCGGGGAGAAGGTGGTCG 60.679 66.667 0.00 0.00 0.00 4.79
418 419 3.020237 GCTCGGGGAGAAGGTGGTC 62.020 68.421 0.00 0.00 0.00 4.02
419 420 3.003763 GCTCGGGGAGAAGGTGGT 61.004 66.667 0.00 0.00 0.00 4.16
420 421 2.685380 AGCTCGGGGAGAAGGTGG 60.685 66.667 0.00 0.00 0.00 4.61
421 422 2.726351 GGAGCTCGGGGAGAAGGTG 61.726 68.421 7.83 0.00 0.00 4.00
422 423 2.364448 GGAGCTCGGGGAGAAGGT 60.364 66.667 7.83 0.00 0.00 3.50
423 424 3.157949 GGGAGCTCGGGGAGAAGG 61.158 72.222 7.83 0.00 0.00 3.46
424 425 3.532155 CGGGAGCTCGGGGAGAAG 61.532 72.222 7.83 0.00 0.00 2.85
456 457 0.115349 AGGGGACTACAGTGCTCAGT 59.885 55.000 3.46 0.00 39.54 3.41
462 463 2.058595 CCGGGAGGGGACTACAGTG 61.059 68.421 0.00 0.00 46.31 3.66
575 607 0.254178 TGAATGAGGAGGGCAAGAGC 59.746 55.000 0.00 0.00 41.10 4.09
576 608 1.407989 GGTGAATGAGGAGGGCAAGAG 60.408 57.143 0.00 0.00 0.00 2.85
577 609 0.620556 GGTGAATGAGGAGGGCAAGA 59.379 55.000 0.00 0.00 0.00 3.02
578 610 0.329261 TGGTGAATGAGGAGGGCAAG 59.671 55.000 0.00 0.00 0.00 4.01
579 611 0.038166 GTGGTGAATGAGGAGGGCAA 59.962 55.000 0.00 0.00 0.00 4.52
580 612 1.685224 GTGGTGAATGAGGAGGGCA 59.315 57.895 0.00 0.00 0.00 5.36
581 613 1.077429 GGTGGTGAATGAGGAGGGC 60.077 63.158 0.00 0.00 0.00 5.19
598 630 4.570663 GAGGATGCGGGTCGTCGG 62.571 72.222 0.00 0.00 0.00 4.79
608 640 4.593864 GCGGGAGACGGAGGATGC 62.594 72.222 0.00 0.00 44.51 3.91
609 641 3.917760 GGCGGGAGACGGAGGATG 61.918 72.222 0.00 0.00 44.51 3.51
631 663 3.349006 GAGTGCGTGGCAGTGGTG 61.349 66.667 2.15 0.00 42.74 4.17
632 664 1.826340 TATGAGTGCGTGGCAGTGGT 61.826 55.000 2.15 0.00 42.74 4.16
633 665 1.079197 TATGAGTGCGTGGCAGTGG 60.079 57.895 2.15 0.00 42.74 4.00
634 666 0.390340 AGTATGAGTGCGTGGCAGTG 60.390 55.000 2.15 0.00 42.74 3.66
635 667 0.108615 GAGTATGAGTGCGTGGCAGT 60.109 55.000 0.00 0.00 45.60 4.40
636 668 0.807667 GGAGTATGAGTGCGTGGCAG 60.808 60.000 0.00 0.00 40.08 4.85
637 669 1.218047 GGAGTATGAGTGCGTGGCA 59.782 57.895 0.00 0.00 35.60 4.92
638 670 1.084370 GTGGAGTATGAGTGCGTGGC 61.084 60.000 0.00 0.00 0.00 5.01
639 671 0.460284 GGTGGAGTATGAGTGCGTGG 60.460 60.000 0.00 0.00 0.00 4.94
640 672 0.532573 AGGTGGAGTATGAGTGCGTG 59.467 55.000 0.00 0.00 0.00 5.34
643 675 2.234908 ACAAGAGGTGGAGTATGAGTGC 59.765 50.000 0.00 0.00 0.00 4.40
644 676 4.248859 CAACAAGAGGTGGAGTATGAGTG 58.751 47.826 0.00 0.00 0.00 3.51
645 677 3.307059 GCAACAAGAGGTGGAGTATGAGT 60.307 47.826 0.00 0.00 0.00 3.41
646 678 3.265791 GCAACAAGAGGTGGAGTATGAG 58.734 50.000 0.00 0.00 0.00 2.90
647 679 2.637382 TGCAACAAGAGGTGGAGTATGA 59.363 45.455 0.00 0.00 0.00 2.15
648 680 3.005554 CTGCAACAAGAGGTGGAGTATG 58.994 50.000 0.00 0.00 0.00 2.39
651 683 1.131638 TCTGCAACAAGAGGTGGAGT 58.868 50.000 2.06 0.00 0.00 3.85
652 684 2.354259 GATCTGCAACAAGAGGTGGAG 58.646 52.381 0.00 0.00 0.00 3.86
653 685 1.003580 GGATCTGCAACAAGAGGTGGA 59.996 52.381 0.00 0.00 0.00 4.02
654 686 1.457346 GGATCTGCAACAAGAGGTGG 58.543 55.000 0.00 0.00 0.00 4.61
655 687 1.081892 CGGATCTGCAACAAGAGGTG 58.918 55.000 0.00 0.00 0.00 4.00
656 688 0.036010 CCGGATCTGCAACAAGAGGT 60.036 55.000 0.00 0.00 0.00 3.85
657 689 1.372087 GCCGGATCTGCAACAAGAGG 61.372 60.000 5.05 0.00 0.00 3.69
658 690 0.674581 TGCCGGATCTGCAACAAGAG 60.675 55.000 5.05 0.00 35.40 2.85
660 692 0.957395 AGTGCCGGATCTGCAACAAG 60.957 55.000 5.05 0.00 41.06 3.16
661 693 0.537143 AAGTGCCGGATCTGCAACAA 60.537 50.000 5.05 0.00 41.06 2.83
663 695 1.648467 GGAAGTGCCGGATCTGCAAC 61.648 60.000 5.05 4.70 41.06 4.17
664 696 1.377202 GGAAGTGCCGGATCTGCAA 60.377 57.895 5.05 0.00 41.06 4.08
665 697 1.913951 ATGGAAGTGCCGGATCTGCA 61.914 55.000 5.05 6.40 40.66 4.41
667 699 0.533755 GGATGGAAGTGCCGGATCTG 60.534 60.000 5.05 0.00 40.66 2.90
668 700 0.982852 TGGATGGAAGTGCCGGATCT 60.983 55.000 5.05 0.00 40.66 2.75
670 702 1.224592 GTGGATGGAAGTGCCGGAT 59.775 57.895 5.05 0.00 40.66 4.18
673 705 1.450312 GAGGTGGATGGAAGTGCCG 60.450 63.158 0.00 0.00 40.66 5.69
675 707 1.450312 CGGAGGTGGATGGAAGTGC 60.450 63.158 0.00 0.00 0.00 4.40
676 708 0.108138 GACGGAGGTGGATGGAAGTG 60.108 60.000 0.00 0.00 0.00 3.16
677 709 1.265454 GGACGGAGGTGGATGGAAGT 61.265 60.000 0.00 0.00 0.00 3.01
678 710 1.522569 GGACGGAGGTGGATGGAAG 59.477 63.158 0.00 0.00 0.00 3.46
681 713 4.530857 GCGGACGGAGGTGGATGG 62.531 72.222 0.00 0.00 0.00 3.51
682 714 4.873129 CGCGGACGGAGGTGGATG 62.873 72.222 0.00 0.00 34.97 3.51
699 731 2.114838 GATGGCTGCCCTGGATCC 59.885 66.667 17.53 4.20 0.00 3.36
700 732 2.114838 GGATGGCTGCCCTGGATC 59.885 66.667 17.53 11.99 0.00 3.36
701 733 2.697263 TGGATGGCTGCCCTGGAT 60.697 61.111 17.53 2.00 0.00 3.41
704 736 3.711059 GAGGTGGATGGCTGCCCTG 62.711 68.421 17.53 0.00 0.00 4.45
705 737 3.415087 GAGGTGGATGGCTGCCCT 61.415 66.667 17.53 6.10 0.00 5.19
706 738 4.512914 GGAGGTGGATGGCTGCCC 62.513 72.222 17.53 0.58 0.00 5.36
708 740 4.101448 ACGGAGGTGGATGGCTGC 62.101 66.667 0.00 0.00 0.00 5.25
709 741 2.187946 GACGGAGGTGGATGGCTG 59.812 66.667 0.00 0.00 0.00 4.85
710 742 2.039624 AGACGGAGGTGGATGGCT 59.960 61.111 0.00 0.00 0.00 4.75
711 743 2.501610 GAGACGGAGGTGGATGGC 59.498 66.667 0.00 0.00 0.00 4.40
712 744 1.729470 CTCGAGACGGAGGTGGATGG 61.729 65.000 6.58 0.00 0.00 3.51
715 747 2.045242 CCTCGAGACGGAGGTGGA 60.045 66.667 15.71 0.00 46.97 4.02
720 752 1.437772 ATGCGTACCTCGAGACGGAG 61.438 60.000 23.11 6.46 42.74 4.63
722 754 1.009900 GATGCGTACCTCGAGACGG 60.010 63.158 23.11 8.08 42.86 4.79
723 755 1.367782 CGATGCGTACCTCGAGACG 60.368 63.158 19.17 19.17 42.86 4.18
724 756 1.654743 GCGATGCGTACCTCGAGAC 60.655 63.158 15.71 3.83 42.86 3.36
726 758 2.353607 GGCGATGCGTACCTCGAG 60.354 66.667 5.13 5.13 42.86 4.04
727 759 3.896133 GGGCGATGCGTACCTCGA 61.896 66.667 10.34 0.00 42.86 4.04
729 761 3.711541 AACGGGCGATGCGTACCTC 62.712 63.158 0.00 0.00 0.00 3.85
730 762 3.711541 GAACGGGCGATGCGTACCT 62.712 63.158 0.00 0.00 0.00 3.08
731 763 3.259751 GAACGGGCGATGCGTACC 61.260 66.667 0.00 0.00 0.00 3.34
732 764 3.613702 CGAACGGGCGATGCGTAC 61.614 66.667 0.00 0.00 0.00 3.67
733 765 3.813143 TCGAACGGGCGATGCGTA 61.813 61.111 0.00 0.00 35.01 4.42
736 768 2.799540 GAAGTCGAACGGGCGATGC 61.800 63.158 5.21 0.00 42.82 3.91
737 769 2.505498 CGAAGTCGAACGGGCGATG 61.505 63.158 5.21 0.00 42.82 3.84
738 770 2.202570 CGAAGTCGAACGGGCGAT 60.203 61.111 5.21 0.00 42.82 4.58
749 781 2.244651 AGTGTTGCACGGCGAAGTC 61.245 57.895 16.62 2.93 39.64 3.01
751 783 2.249309 CAGTGTTGCACGGCGAAG 59.751 61.111 16.62 6.85 39.64 3.79
772 804 2.025156 GGCGAGGCAATGCGAATG 59.975 61.111 0.00 0.00 0.00 2.67
773 805 2.124570 AGGCGAGGCAATGCGAAT 60.125 55.556 0.00 0.00 0.00 3.34
774 806 2.819595 GAGGCGAGGCAATGCGAA 60.820 61.111 0.00 0.00 0.00 4.70
775 807 4.838152 GGAGGCGAGGCAATGCGA 62.838 66.667 0.00 0.00 0.00 5.10
776 808 4.845580 AGGAGGCGAGGCAATGCG 62.846 66.667 0.00 0.00 0.00 4.73
777 809 2.899339 GAGGAGGCGAGGCAATGC 60.899 66.667 0.00 0.00 0.00 3.56
778 810 2.203126 GGAGGAGGCGAGGCAATG 60.203 66.667 0.00 0.00 0.00 2.82
779 811 3.854669 CGGAGGAGGCGAGGCAAT 61.855 66.667 0.00 0.00 0.00 3.56
783 815 3.213402 GAGACGGAGGAGGCGAGG 61.213 72.222 0.00 0.00 0.00 4.63
784 816 3.213402 GGAGACGGAGGAGGCGAG 61.213 72.222 0.00 0.00 0.00 5.03
810 842 0.907704 TGGAGTATGAGCACGGGGTT 60.908 55.000 0.00 0.00 0.00 4.11
818 850 1.742768 CGGGAGGTGGAGTATGAGC 59.257 63.158 0.00 0.00 0.00 4.26
829 861 3.474570 GGATCTGCAGCGGGAGGT 61.475 66.667 9.47 0.00 44.42 3.85
898 935 2.577593 GTAGGGACAGGGACGCAC 59.422 66.667 0.00 0.00 0.00 5.34
902 939 0.976590 GAGGTGGTAGGGACAGGGAC 60.977 65.000 0.00 0.00 0.00 4.46
903 940 1.390926 GAGGTGGTAGGGACAGGGA 59.609 63.158 0.00 0.00 0.00 4.20
904 941 1.689582 GGAGGTGGTAGGGACAGGG 60.690 68.421 0.00 0.00 0.00 4.45
906 943 1.689582 GGGGAGGTGGTAGGGACAG 60.690 68.421 0.00 0.00 0.00 3.51
907 944 2.453054 GGGGAGGTGGTAGGGACA 59.547 66.667 0.00 0.00 0.00 4.02
909 946 2.177529 GACTGGGGAGGTGGTAGGGA 62.178 65.000 0.00 0.00 0.00 4.20
922 959 4.394712 GGGTGAGGCGTGACTGGG 62.395 72.222 0.00 0.00 0.00 4.45
928 965 4.351938 TCGAACGGGTGAGGCGTG 62.352 66.667 0.00 0.00 0.00 5.34
933 970 0.314302 AGTGAAGTCGAACGGGTGAG 59.686 55.000 0.00 0.00 0.00 3.51
939 976 3.000080 GCGGCAGTGAAGTCGAACG 62.000 63.158 0.00 0.00 39.34 3.95
972 1009 1.285578 GAGAGTTGGAGAAGCGATGC 58.714 55.000 0.00 0.00 0.00 3.91
977 1014 0.108567 GTCCCGAGAGTTGGAGAAGC 60.109 60.000 0.00 0.00 0.00 3.86
985 1022 1.202582 CGACATCTTGTCCCGAGAGTT 59.797 52.381 2.26 0.00 44.20 3.01
988 1025 0.611062 ACCGACATCTTGTCCCGAGA 60.611 55.000 2.26 0.00 44.20 4.04
995 3086 1.738099 GCGCTCACCGACATCTTGT 60.738 57.895 0.00 0.00 40.02 3.16
1266 3361 5.116084 TGAATCCTAGCTTTGCATTACCT 57.884 39.130 0.00 0.00 0.00 3.08
1313 3408 3.134127 GGCGCTGTCCCAACATCC 61.134 66.667 7.64 0.00 34.13 3.51
1389 3487 1.434555 TTGAAACGTACCTGATGCGG 58.565 50.000 0.00 0.00 41.31 5.69
1418 3516 4.248058 GGGGAATCTGCAAAATTGTTCTG 58.752 43.478 0.00 0.00 0.00 3.02
1430 3528 6.942576 AGTAACATATACAATGGGGAATCTGC 59.057 38.462 0.00 0.00 0.00 4.26
1577 5843 9.821662 GGTAGTCATACTTGATTGTTTTACAAC 57.178 33.333 0.00 0.00 35.09 3.32
1589 5855 7.770366 TGTTTAGTGAGGTAGTCATACTTGA 57.230 36.000 0.00 0.00 37.56 3.02
1694 5987 1.521450 CCACAAGACCAGCAGCCTTG 61.521 60.000 7.39 7.39 42.04 3.61
1718 6011 2.273619 AGCTCCTTCTTTGGACCATCT 58.726 47.619 0.00 0.00 31.94 2.90
1759 6052 2.158549 ACCTTGAGCTCCTTTTCTGCTT 60.159 45.455 12.15 0.00 37.16 3.91
1817 6110 1.102978 ACACCTGTTTGGCAAGTGTC 58.897 50.000 14.91 2.90 46.53 3.67
1955 6266 3.576078 ATGTCTTCCACCTCACAAACA 57.424 42.857 0.00 0.00 0.00 2.83
1989 6306 5.639506 ACCTCTTGTGTGTGAGATAATTTCG 59.360 40.000 0.00 0.00 32.44 3.46
2230 7195 7.161773 AGGTCCAAACAAGATGAATAATGTG 57.838 36.000 0.00 0.00 0.00 3.21
2302 7434 5.941555 TTTTTGTGGTATTCAAACACCCT 57.058 34.783 0.00 0.00 35.05 4.34
2449 10688 3.812053 CCAATCTACATGTAAGAGCCTGC 59.188 47.826 7.06 0.00 0.00 4.85
2717 13843 5.277202 CGCTGATATGACATTTCAAGACCAG 60.277 44.000 9.46 0.00 34.61 4.00
2875 16183 0.034767 CATGCTGACTGGTCCCACAT 60.035 55.000 0.00 0.00 0.00 3.21
3234 16566 1.144093 CCTTCCACTGTGGGGTTTACA 59.856 52.381 25.67 2.39 38.32 2.41
3247 16579 8.847196 GTTTAATATATTCTTCACCCCTTCCAC 58.153 37.037 0.00 0.00 0.00 4.02
3450 24101 7.443575 GGCTGAATCAAGCTTCTATTGATAAGA 59.556 37.037 8.03 0.00 44.57 2.10
3454 24105 5.531659 CAGGCTGAATCAAGCTTCTATTGAT 59.468 40.000 9.42 0.58 46.69 2.57
3485 24136 3.306088 CGATACCAACTCGCCATCCTTAT 60.306 47.826 0.00 0.00 0.00 1.73
3570 24221 3.325293 TCAGGACTGCATTCAACTCTC 57.675 47.619 6.38 0.00 0.00 3.20
3584 24235 2.499289 TCTCTTGCCATCTCTTCAGGAC 59.501 50.000 0.00 0.00 0.00 3.85
3586 24237 3.134262 TGATCTCTTGCCATCTCTTCAGG 59.866 47.826 0.00 0.00 0.00 3.86
3594 24245 1.245732 GGCCATGATCTCTTGCCATC 58.754 55.000 0.00 0.00 0.00 3.51
3615 24266 6.183360 TGGATATACGACGGACCTTGTATTTT 60.183 38.462 0.00 0.82 0.00 1.82
3662 24313 3.538591 CTTGATGTTGCCTCATCTGCTA 58.461 45.455 15.69 0.00 43.03 3.49
3685 24336 5.854010 TGTGATACACTAGAAGGGATGAC 57.146 43.478 0.00 0.00 35.11 3.06
3686 24337 5.958380 ACTTGTGATACACTAGAAGGGATGA 59.042 40.000 16.88 0.00 38.97 2.92
3769 24420 3.692257 ACAGAGAAACACCCTGAGATG 57.308 47.619 0.00 0.00 0.00 2.90
3781 24432 4.098807 GTGGCCCAAACTTTTACAGAGAAA 59.901 41.667 0.00 0.00 0.00 2.52
3788 24439 2.544277 GGTTCGTGGCCCAAACTTTTAC 60.544 50.000 0.00 0.00 0.00 2.01
3789 24440 1.682323 GGTTCGTGGCCCAAACTTTTA 59.318 47.619 0.00 0.00 0.00 1.52
3802 24453 4.393062 AGCAGTAAGATCAATTGGTTCGTG 59.607 41.667 5.42 3.54 0.00 4.35
3808 24459 6.712095 TGGCTAATAGCAGTAAGATCAATTGG 59.288 38.462 14.76 0.00 44.75 3.16
3819 24473 3.882888 GCACCAATTGGCTAATAGCAGTA 59.117 43.478 24.79 0.00 44.75 2.74
3838 24492 5.959618 ACCTTTAAATACCTCAGTTGCAC 57.040 39.130 0.00 0.00 0.00 4.57
3840 24494 6.977213 TGAAACCTTTAAATACCTCAGTTGC 58.023 36.000 0.00 0.00 0.00 4.17
3866 24520 4.593956 AGGGAGTTTGATTTCATCTCCAC 58.406 43.478 22.22 15.76 43.05 4.02
3868 24522 5.995446 AGTAGGGAGTTTGATTTCATCTCC 58.005 41.667 16.97 16.97 41.84 3.71
3869 24523 9.449719 TTTTAGTAGGGAGTTTGATTTCATCTC 57.550 33.333 5.34 5.34 0.00 2.75
3873 24527 8.167392 TCCATTTTAGTAGGGAGTTTGATTTCA 58.833 33.333 0.00 0.00 0.00 2.69
3898 24552 0.968405 TCCAAATGCACAAGCCCTTC 59.032 50.000 0.00 0.00 41.13 3.46
4067 24721 1.066716 CCAACGAATTCGGGTACTGGA 60.067 52.381 29.79 0.00 44.95 3.86
4070 24724 1.206371 CCTCCAACGAATTCGGGTACT 59.794 52.381 29.79 7.44 44.95 2.73
4072 24726 1.559368 TCCTCCAACGAATTCGGGTA 58.441 50.000 29.79 12.48 44.95 3.69
4073 24727 0.909623 ATCCTCCAACGAATTCGGGT 59.090 50.000 29.79 15.74 44.95 5.28
4079 24733 3.973973 TCCCTCAATATCCTCCAACGAAT 59.026 43.478 0.00 0.00 0.00 3.34
4116 24770 0.520404 GAACCACGCGTCTCAGACTA 59.480 55.000 9.86 0.00 0.00 2.59
4118 24772 0.729816 GAGAACCACGCGTCTCAGAC 60.730 60.000 9.86 0.00 0.00 3.51
4129 24783 5.652994 AGTGAAGATACTGAGAGAACCAC 57.347 43.478 0.00 0.00 0.00 4.16
4143 24797 4.590918 TCTCAAGTCGGTCTAGTGAAGAT 58.409 43.478 0.00 0.00 36.36 2.40
4145 24799 4.974368 ATCTCAAGTCGGTCTAGTGAAG 57.026 45.455 0.00 0.00 0.00 3.02
4149 24803 2.873472 CGCTATCTCAAGTCGGTCTAGT 59.127 50.000 0.00 0.00 0.00 2.57
4156 24810 2.389059 CCATGTCGCTATCTCAAGTCG 58.611 52.381 0.00 0.00 0.00 4.18
4170 24824 1.080569 CGCCAAAGCAACCCATGTC 60.081 57.895 0.00 0.00 39.83 3.06
4171 24825 3.050339 CGCCAAAGCAACCCATGT 58.950 55.556 0.00 0.00 39.83 3.21
4237 24891 2.223758 GGTCACTCGTATAAGAGGCACC 60.224 54.545 18.23 17.49 42.31 5.01
4312 24966 3.961408 GGAACTCTAGGCATCCTAAGACA 59.039 47.826 0.00 0.00 35.49 3.41
4417 25074 3.710722 CACGGGAGAGGGCAGCTT 61.711 66.667 0.00 0.00 0.00 3.74
4430 25087 1.148310 CTGTAAACTGAGGTGCACGG 58.852 55.000 11.45 3.57 0.00 4.94
4450 25107 0.907486 TCTTCAGGGATGCTCCACAG 59.093 55.000 4.85 0.00 38.64 3.66
4470 25127 2.995939 CGCAGAGAAAATGACAGTGCTA 59.004 45.455 0.00 0.00 0.00 3.49
4474 25131 1.347707 TCCCGCAGAGAAAATGACAGT 59.652 47.619 0.00 0.00 0.00 3.55
4657 25314 7.661968 TGTATACAATGATAGTCTTGAGGCTC 58.338 38.462 7.79 7.79 0.00 4.70
4668 25325 6.638168 CGCAGGTGATGTATACAATGATAG 57.362 41.667 10.14 0.86 0.00 2.08
4722 25394 1.622811 AGTTCCTGAAGGCAGACTCTG 59.377 52.381 1.21 1.21 45.17 3.35
4746 25418 1.065273 CGATTTGGATGCAGCTGCC 59.935 57.895 34.64 20.55 41.18 4.85
4768 25440 5.163550 TGGTCTATTGTAGATGTGAAGACGG 60.164 44.000 0.00 0.00 37.13 4.79
4922 25616 0.918310 ATGGCCTCTCTTCTGCCCTT 60.918 55.000 3.32 0.00 44.72 3.95
4959 25653 2.119611 TCCTCGGCCTCCACAAGA 59.880 61.111 0.00 0.00 0.00 3.02
4962 25656 4.671590 TCGTCCTCGGCCTCCACA 62.672 66.667 0.00 0.00 37.69 4.17
5045 25746 3.897122 ACAACCACCCCGCCACAT 61.897 61.111 0.00 0.00 0.00 3.21
5067 25774 3.060615 CAAGGAGCCCAGCAGCAC 61.061 66.667 0.00 0.00 34.23 4.40
5102 25819 1.748122 CAGAAGAATGGCCGCAGCT 60.748 57.895 0.00 0.00 39.73 4.24
5152 25874 3.876589 TTCCTGTTCCGGCAGCGAC 62.877 63.158 0.00 0.00 35.28 5.19
5214 26454 0.033090 CTACCGCCGTCCTATTTCCC 59.967 60.000 0.00 0.00 0.00 3.97
5302 26561 0.249911 ACCAACTGTCGCAACTCCTC 60.250 55.000 0.00 0.00 0.00 3.71
5303 26562 0.249911 GACCAACTGTCGCAACTCCT 60.250 55.000 0.00 0.00 33.49 3.69
5312 26571 3.206150 TGAAGAAGCTTGACCAACTGTC 58.794 45.455 2.10 0.00 44.72 3.51
5313 26572 3.209410 CTGAAGAAGCTTGACCAACTGT 58.791 45.455 2.10 0.00 0.00 3.55
5314 26573 3.209410 ACTGAAGAAGCTTGACCAACTG 58.791 45.455 2.10 0.00 0.00 3.16
5315 26574 3.567478 ACTGAAGAAGCTTGACCAACT 57.433 42.857 2.10 0.00 0.00 3.16
5316 26575 4.354587 CAAACTGAAGAAGCTTGACCAAC 58.645 43.478 2.10 0.00 34.45 3.77
5317 26576 3.381272 CCAAACTGAAGAAGCTTGACCAA 59.619 43.478 2.10 0.00 34.45 3.67
5319 26578 2.287849 GCCAAACTGAAGAAGCTTGACC 60.288 50.000 2.10 0.00 34.45 4.02
5320 26579 2.287849 GGCCAAACTGAAGAAGCTTGAC 60.288 50.000 2.10 0.00 34.45 3.18
5321 26580 1.956477 GGCCAAACTGAAGAAGCTTGA 59.044 47.619 2.10 0.00 34.45 3.02
5322 26581 1.959282 AGGCCAAACTGAAGAAGCTTG 59.041 47.619 2.10 0.00 32.66 4.01
5334 26622 1.886542 ACTTCCGAATTGAGGCCAAAC 59.113 47.619 5.01 0.00 35.67 2.93
5412 26713 3.662713 CGCATCGAATTTCGCTGAATAGG 60.663 47.826 22.69 5.26 38.15 2.57
5499 26806 7.173218 TCCTCTATTGCTTAACTTTGAACACAG 59.827 37.037 0.00 0.00 0.00 3.66
5506 26813 7.756722 CCAATGTTCCTCTATTGCTTAACTTTG 59.243 37.037 0.00 0.00 33.92 2.77
5507 26814 7.577616 GCCAATGTTCCTCTATTGCTTAACTTT 60.578 37.037 0.00 0.00 33.92 2.66
5525 26832 4.557296 CGAACAGAATTGACAGCCAATGTT 60.557 41.667 0.00 0.00 44.28 2.71
5556 26863 7.578736 GCATTGTCAGTTTAATTTGTTTGTTCG 59.421 33.333 0.00 0.00 0.00 3.95
5573 26880 4.993584 AGACAGTTGAGTAAGCATTGTCAG 59.006 41.667 0.00 0.00 36.24 3.51
5576 26883 5.853936 TGTAGACAGTTGAGTAAGCATTGT 58.146 37.500 0.00 0.00 0.00 2.71
5621 26928 5.586643 GGAACCACATCATTCTAGGAAGAAC 59.413 44.000 0.00 0.00 44.40 3.01
5627 26934 5.945784 TCTTTTGGAACCACATCATTCTAGG 59.054 40.000 0.00 0.00 0.00 3.02
5631 26938 4.219288 AGCTCTTTTGGAACCACATCATTC 59.781 41.667 0.00 0.00 0.00 2.67
5653 26963 4.872691 CCACAAGATTACAGCAAGTCCTAG 59.127 45.833 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.