Multiple sequence alignment - TraesCS1A01G425200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G425200 chr1A 100.000 5770 0 0 1 5770 580419857 580425626 0.000000e+00 10656.0
1 TraesCS1A01G425200 chr1A 89.916 119 12 0 74 192 517640403 517640521 2.780000e-33 154.0
2 TraesCS1A01G425200 chr1D 91.234 4221 232 50 254 4416 483512250 483516390 0.000000e+00 5618.0
3 TraesCS1A01G425200 chr1D 88.419 639 54 9 4410 5042 483516424 483517048 0.000000e+00 752.0
4 TraesCS1A01G425200 chr1D 83.600 811 61 41 4983 5770 483517088 483517849 0.000000e+00 695.0
5 TraesCS1A01G425200 chr1D 89.167 120 13 0 73 192 322624817 322624936 3.600000e-32 150.0
6 TraesCS1A01G425200 chr1B 91.189 4154 235 45 334 4416 673741030 673745123 0.000000e+00 5522.0
7 TraesCS1A01G425200 chr1B 94.730 797 28 10 4410 5197 673745157 673745948 0.000000e+00 1227.0
8 TraesCS1A01G425200 chr1B 86.939 490 19 16 5235 5703 673745946 673746411 5.160000e-140 508.0
9 TraesCS1A01G425200 chr3D 83.333 276 43 1 2764 3036 312889709 312889984 9.600000e-63 252.0
10 TraesCS1A01G425200 chr3B 83.150 273 43 1 2767 3036 407187306 407187034 4.470000e-61 246.0
11 TraesCS1A01G425200 chr3A 82.051 273 46 1 2767 3036 419540737 419540465 4.500000e-56 230.0
12 TraesCS1A01G425200 chr2B 93.162 117 8 0 76 192 627142911 627142795 7.690000e-39 172.0
13 TraesCS1A01G425200 chr2B 89.167 120 13 0 73 192 63247931 63247812 3.600000e-32 150.0
14 TraesCS1A01G425200 chr2B 87.200 125 16 0 68 192 86681480 86681356 6.030000e-30 143.0
15 TraesCS1A01G425200 chr7A 90.083 121 10 2 73 192 462319754 462319873 7.740000e-34 156.0
16 TraesCS1A01G425200 chr7A 79.661 177 29 5 80 253 232343318 232343146 2.820000e-23 121.0
17 TraesCS1A01G425200 chr5A 89.256 121 11 2 73 192 613159103 613159222 3.600000e-32 150.0
18 TraesCS1A01G425200 chr4D 89.167 120 13 0 73 192 287561402 287561521 3.600000e-32 150.0
19 TraesCS1A01G425200 chr5D 88.525 61 7 0 193 253 494782522 494782582 2.230000e-09 75.0
20 TraesCS1A01G425200 chr5B 85.246 61 9 0 193 253 10072473 10072533 4.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G425200 chr1A 580419857 580425626 5769 False 10656 10656 100.000000 1 5770 1 chr1A.!!$F2 5769
1 TraesCS1A01G425200 chr1D 483512250 483517849 5599 False 2355 5618 87.751000 254 5770 3 chr1D.!!$F2 5516
2 TraesCS1A01G425200 chr1B 673741030 673746411 5381 False 2419 5522 90.952667 334 5703 3 chr1B.!!$F1 5369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.036388 CACACGCACACCCTATCCTT 60.036 55.0 0.00 0.0 0.00 3.36 F
551 559 0.388520 CCGGAATATCGCGCTCATGA 60.389 55.0 5.56 0.0 0.00 3.07 F
2049 2091 0.969149 ATCTGTCGCAGTCTTCCACA 59.031 50.0 6.72 0.0 32.61 4.17 F
3526 3590 0.110373 GCCTTTAACCAGACGCAACG 60.110 55.0 0.00 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1821 0.706433 ATGTGCATTTCCCAGGAGGT 59.294 50.0 0.0 0.0 36.75 3.85 R
2200 2242 1.225855 TGTGGACTGATTGTGCGAAC 58.774 50.0 0.0 0.0 40.08 3.95 R
3854 3932 0.449388 GCTGCAAAATGAGAGACCGG 59.551 55.0 0.0 0.0 0.00 5.28 R
5194 5446 0.031716 AGCAGAGGTGGCATAGGAGA 60.032 55.0 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.541147 AGCATGACAAATGGTTGGTCG 59.459 47.619 0.00 0.00 39.22 4.79
21 22 1.539388 GCATGACAAATGGTTGGTCGA 59.461 47.619 0.00 0.00 39.22 4.20
22 23 2.164219 GCATGACAAATGGTTGGTCGAT 59.836 45.455 0.00 0.00 39.22 3.59
23 24 3.367292 GCATGACAAATGGTTGGTCGATT 60.367 43.478 0.00 0.00 39.22 3.34
24 25 4.808558 CATGACAAATGGTTGGTCGATTT 58.191 39.130 0.00 0.00 39.22 2.17
27 28 2.336667 CAAATGGTTGGTCGATTTGCC 58.663 47.619 0.00 0.00 42.17 4.52
28 29 1.626686 AATGGTTGGTCGATTTGCCA 58.373 45.000 0.00 0.00 0.00 4.92
29 30 1.626686 ATGGTTGGTCGATTTGCCAA 58.373 45.000 1.29 1.29 41.90 4.52
30 31 0.958091 TGGTTGGTCGATTTGCCAAG 59.042 50.000 5.52 0.00 44.39 3.61
31 32 1.243902 GGTTGGTCGATTTGCCAAGA 58.756 50.000 5.52 0.00 44.39 3.02
32 33 1.200020 GGTTGGTCGATTTGCCAAGAG 59.800 52.381 5.52 0.00 44.39 2.85
33 34 1.880027 GTTGGTCGATTTGCCAAGAGT 59.120 47.619 5.52 0.00 44.39 3.24
34 35 2.270352 TGGTCGATTTGCCAAGAGTT 57.730 45.000 0.00 0.00 0.00 3.01
35 36 2.582052 TGGTCGATTTGCCAAGAGTTT 58.418 42.857 0.00 0.00 0.00 2.66
36 37 2.955660 TGGTCGATTTGCCAAGAGTTTT 59.044 40.909 0.00 0.00 0.00 2.43
37 38 3.243367 TGGTCGATTTGCCAAGAGTTTTG 60.243 43.478 0.00 0.00 0.00 2.44
38 39 3.004315 GGTCGATTTGCCAAGAGTTTTGA 59.996 43.478 0.00 0.00 0.00 2.69
39 40 4.499019 GGTCGATTTGCCAAGAGTTTTGAA 60.499 41.667 0.00 0.00 0.00 2.69
40 41 5.040635 GTCGATTTGCCAAGAGTTTTGAAA 58.959 37.500 0.00 0.00 0.00 2.69
41 42 5.518487 GTCGATTTGCCAAGAGTTTTGAAAA 59.482 36.000 0.00 0.00 0.00 2.29
42 43 6.035542 GTCGATTTGCCAAGAGTTTTGAAAAA 59.964 34.615 0.00 0.00 0.00 1.94
43 44 6.760770 TCGATTTGCCAAGAGTTTTGAAAAAT 59.239 30.769 0.00 0.00 0.00 1.82
44 45 6.847289 CGATTTGCCAAGAGTTTTGAAAAATG 59.153 34.615 0.00 0.00 0.00 2.32
45 46 5.482686 TTGCCAAGAGTTTTGAAAAATGC 57.517 34.783 0.00 0.00 0.00 3.56
46 47 4.511527 TGCCAAGAGTTTTGAAAAATGCA 58.488 34.783 0.00 0.00 0.00 3.96
47 48 4.571580 TGCCAAGAGTTTTGAAAAATGCAG 59.428 37.500 0.00 0.00 0.00 4.41
48 49 4.810491 GCCAAGAGTTTTGAAAAATGCAGA 59.190 37.500 0.00 0.00 0.00 4.26
49 50 5.294060 GCCAAGAGTTTTGAAAAATGCAGAA 59.706 36.000 0.00 0.00 0.00 3.02
50 51 6.183360 GCCAAGAGTTTTGAAAAATGCAGAAA 60.183 34.615 0.00 0.00 0.00 2.52
51 52 7.626028 GCCAAGAGTTTTGAAAAATGCAGAAAA 60.626 33.333 0.00 0.00 0.00 2.29
52 53 7.906527 CCAAGAGTTTTGAAAAATGCAGAAAAG 59.093 33.333 0.00 0.00 0.00 2.27
53 54 7.543947 AGAGTTTTGAAAAATGCAGAAAAGG 57.456 32.000 0.00 0.00 0.00 3.11
54 55 7.330262 AGAGTTTTGAAAAATGCAGAAAAGGA 58.670 30.769 0.00 0.00 0.00 3.36
55 56 7.989170 AGAGTTTTGAAAAATGCAGAAAAGGAT 59.011 29.630 0.00 0.00 0.00 3.24
56 57 8.510243 AGTTTTGAAAAATGCAGAAAAGGATT 57.490 26.923 0.00 0.00 0.00 3.01
57 58 8.959548 AGTTTTGAAAAATGCAGAAAAGGATTT 58.040 25.926 0.00 0.00 42.41 2.17
58 59 9.225201 GTTTTGAAAAATGCAGAAAAGGATTTC 57.775 29.630 0.00 0.00 44.34 2.17
59 60 8.503458 TTTGAAAAATGCAGAAAAGGATTTCA 57.497 26.923 0.00 0.00 46.03 2.69
60 61 7.718272 TGAAAAATGCAGAAAAGGATTTCAG 57.282 32.000 0.00 0.00 46.03 3.02
61 62 6.707161 TGAAAAATGCAGAAAAGGATTTCAGG 59.293 34.615 0.00 0.00 46.03 3.86
62 63 5.813513 AAATGCAGAAAAGGATTTCAGGT 57.186 34.783 0.00 0.00 46.03 4.00
63 64 4.796038 ATGCAGAAAAGGATTTCAGGTG 57.204 40.909 0.00 0.00 46.03 4.00
64 65 3.831323 TGCAGAAAAGGATTTCAGGTGA 58.169 40.909 4.34 0.00 46.03 4.02
65 66 3.822735 TGCAGAAAAGGATTTCAGGTGAG 59.177 43.478 4.34 0.00 46.03 3.51
66 67 3.192212 GCAGAAAAGGATTTCAGGTGAGG 59.808 47.826 4.34 0.00 46.03 3.86
67 68 3.760684 CAGAAAAGGATTTCAGGTGAGGG 59.239 47.826 4.34 0.00 46.03 4.30
68 69 2.222227 AAAGGATTTCAGGTGAGGGC 57.778 50.000 0.00 0.00 27.08 5.19
69 70 1.075601 AAGGATTTCAGGTGAGGGCA 58.924 50.000 0.00 0.00 0.00 5.36
70 71 1.302907 AGGATTTCAGGTGAGGGCAT 58.697 50.000 0.00 0.00 0.00 4.40
71 72 1.213926 AGGATTTCAGGTGAGGGCATC 59.786 52.381 0.00 0.00 0.00 3.91
72 73 1.685148 GATTTCAGGTGAGGGCATCC 58.315 55.000 0.00 0.00 0.00 3.51
73 74 1.002069 ATTTCAGGTGAGGGCATCCA 58.998 50.000 0.00 0.00 34.83 3.41
74 75 0.038166 TTTCAGGTGAGGGCATCCAC 59.962 55.000 0.00 0.00 34.83 4.02
82 83 4.002006 GGGCATCCACCCCTATGA 57.998 61.111 0.00 0.00 45.00 2.15
83 84 1.763770 GGGCATCCACCCCTATGAG 59.236 63.158 0.00 0.00 45.00 2.90
84 85 1.073897 GGCATCCACCCCTATGAGC 59.926 63.158 0.00 0.00 0.00 4.26
85 86 1.302033 GCATCCACCCCTATGAGCG 60.302 63.158 0.00 0.00 0.00 5.03
86 87 1.302033 CATCCACCCCTATGAGCGC 60.302 63.158 0.00 0.00 0.00 5.92
87 88 1.766059 ATCCACCCCTATGAGCGCA 60.766 57.895 11.47 0.00 0.00 6.09
88 89 2.044806 ATCCACCCCTATGAGCGCAC 62.045 60.000 11.47 3.13 0.00 5.34
89 90 2.584064 CACCCCTATGAGCGCACA 59.416 61.111 10.65 10.65 0.00 4.57
90 91 1.815421 CACCCCTATGAGCGCACAC 60.815 63.158 10.42 0.47 0.00 3.82
91 92 2.290287 ACCCCTATGAGCGCACACA 61.290 57.895 10.42 7.06 0.00 3.72
92 93 1.815421 CCCCTATGAGCGCACACAC 60.815 63.158 10.42 0.00 0.00 3.82
93 94 2.167219 CCCTATGAGCGCACACACG 61.167 63.158 10.42 1.23 0.00 4.49
102 103 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
103 104 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
104 105 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
105 106 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
106 107 1.192146 ACACACGCACACCCTATCCT 61.192 55.000 0.00 0.00 0.00 3.24
107 108 0.036388 CACACGCACACCCTATCCTT 60.036 55.000 0.00 0.00 0.00 3.36
108 109 1.206132 CACACGCACACCCTATCCTTA 59.794 52.381 0.00 0.00 0.00 2.69
109 110 2.116238 ACACGCACACCCTATCCTTAT 58.884 47.619 0.00 0.00 0.00 1.73
110 111 2.504175 ACACGCACACCCTATCCTTATT 59.496 45.455 0.00 0.00 0.00 1.40
111 112 3.707611 ACACGCACACCCTATCCTTATTA 59.292 43.478 0.00 0.00 0.00 0.98
112 113 4.202223 ACACGCACACCCTATCCTTATTAG 60.202 45.833 0.00 0.00 0.00 1.73
113 114 3.244112 ACGCACACCCTATCCTTATTAGC 60.244 47.826 0.00 0.00 0.00 3.09
114 115 3.244078 CGCACACCCTATCCTTATTAGCA 60.244 47.826 0.00 0.00 0.00 3.49
115 116 4.065789 GCACACCCTATCCTTATTAGCAC 58.934 47.826 0.00 0.00 0.00 4.40
116 117 4.642429 CACACCCTATCCTTATTAGCACC 58.358 47.826 0.00 0.00 0.00 5.01
117 118 4.348168 CACACCCTATCCTTATTAGCACCT 59.652 45.833 0.00 0.00 0.00 4.00
118 119 4.975794 ACACCCTATCCTTATTAGCACCTT 59.024 41.667 0.00 0.00 0.00 3.50
119 120 5.432060 ACACCCTATCCTTATTAGCACCTTT 59.568 40.000 0.00 0.00 0.00 3.11
120 121 5.765182 CACCCTATCCTTATTAGCACCTTTG 59.235 44.000 0.00 0.00 0.00 2.77
121 122 5.670361 ACCCTATCCTTATTAGCACCTTTGA 59.330 40.000 0.00 0.00 0.00 2.69
122 123 6.159751 ACCCTATCCTTATTAGCACCTTTGAA 59.840 38.462 0.00 0.00 0.00 2.69
123 124 7.060421 CCCTATCCTTATTAGCACCTTTGAAA 58.940 38.462 0.00 0.00 0.00 2.69
124 125 7.229506 CCCTATCCTTATTAGCACCTTTGAAAG 59.770 40.741 0.00 0.00 0.00 2.62
125 126 7.993183 CCTATCCTTATTAGCACCTTTGAAAGA 59.007 37.037 6.49 0.00 0.00 2.52
126 127 7.631717 ATCCTTATTAGCACCTTTGAAAGAC 57.368 36.000 6.49 0.00 0.00 3.01
127 128 6.779860 TCCTTATTAGCACCTTTGAAAGACT 58.220 36.000 6.49 3.67 0.00 3.24
128 129 6.655003 TCCTTATTAGCACCTTTGAAAGACTG 59.345 38.462 6.49 2.60 0.00 3.51
129 130 6.655003 CCTTATTAGCACCTTTGAAAGACTGA 59.345 38.462 6.49 0.00 0.00 3.41
130 131 7.148340 CCTTATTAGCACCTTTGAAAGACTGAG 60.148 40.741 6.49 0.00 0.00 3.35
131 132 2.225467 AGCACCTTTGAAAGACTGAGC 58.775 47.619 6.49 0.52 0.00 4.26
132 133 1.268079 GCACCTTTGAAAGACTGAGCC 59.732 52.381 6.49 0.00 0.00 4.70
133 134 1.532868 CACCTTTGAAAGACTGAGCCG 59.467 52.381 6.49 0.00 0.00 5.52
134 135 1.160137 CCTTTGAAAGACTGAGCCGG 58.840 55.000 6.49 0.00 0.00 6.13
135 136 1.543429 CCTTTGAAAGACTGAGCCGGT 60.543 52.381 6.49 0.00 0.00 5.28
136 137 2.289444 CCTTTGAAAGACTGAGCCGGTA 60.289 50.000 6.49 0.00 0.00 4.02
137 138 3.600388 CTTTGAAAGACTGAGCCGGTAT 58.400 45.455 1.90 0.00 0.00 2.73
138 139 4.382685 CCTTTGAAAGACTGAGCCGGTATA 60.383 45.833 6.49 0.00 0.00 1.47
139 140 5.353394 TTTGAAAGACTGAGCCGGTATAT 57.647 39.130 1.90 0.00 0.00 0.86
140 141 4.585955 TGAAAGACTGAGCCGGTATATC 57.414 45.455 1.90 0.00 0.00 1.63
141 142 3.958147 TGAAAGACTGAGCCGGTATATCA 59.042 43.478 1.90 1.83 0.00 2.15
142 143 4.588951 TGAAAGACTGAGCCGGTATATCAT 59.411 41.667 1.90 0.00 0.00 2.45
143 144 4.792521 AAGACTGAGCCGGTATATCATC 57.207 45.455 1.90 3.56 0.00 2.92
144 145 4.040936 AGACTGAGCCGGTATATCATCT 57.959 45.455 1.90 5.54 0.00 2.90
145 146 4.411927 AGACTGAGCCGGTATATCATCTT 58.588 43.478 1.90 0.00 0.00 2.40
146 147 4.219507 AGACTGAGCCGGTATATCATCTTG 59.780 45.833 1.90 0.00 0.00 3.02
147 148 4.152647 ACTGAGCCGGTATATCATCTTGA 58.847 43.478 1.90 0.00 0.00 3.02
148 149 4.588951 ACTGAGCCGGTATATCATCTTGAA 59.411 41.667 1.90 0.00 0.00 2.69
149 150 5.070446 ACTGAGCCGGTATATCATCTTGAAA 59.930 40.000 1.90 0.00 0.00 2.69
150 151 6.114187 TGAGCCGGTATATCATCTTGAAAT 57.886 37.500 1.90 0.00 0.00 2.17
151 152 6.533730 TGAGCCGGTATATCATCTTGAAATT 58.466 36.000 1.90 0.00 0.00 1.82
152 153 6.998074 TGAGCCGGTATATCATCTTGAAATTT 59.002 34.615 1.90 0.00 0.00 1.82
153 154 8.154203 TGAGCCGGTATATCATCTTGAAATTTA 58.846 33.333 1.90 0.00 0.00 1.40
154 155 8.324163 AGCCGGTATATCATCTTGAAATTTAC 57.676 34.615 1.90 0.00 0.00 2.01
155 156 7.936847 AGCCGGTATATCATCTTGAAATTTACA 59.063 33.333 1.90 0.00 0.00 2.41
156 157 8.564574 GCCGGTATATCATCTTGAAATTTACAA 58.435 33.333 1.90 0.00 0.00 2.41
164 165 9.903682 ATCATCTTGAAATTTACAAAGTCACTG 57.096 29.630 0.00 0.00 0.00 3.66
165 166 8.902806 TCATCTTGAAATTTACAAAGTCACTGT 58.097 29.630 0.00 0.00 0.00 3.55
168 169 9.607988 TCTTGAAATTTACAAAGTCACTGTAGA 57.392 29.630 0.00 0.00 31.17 2.59
169 170 9.651718 CTTGAAATTTACAAAGTCACTGTAGAC 57.348 33.333 0.00 3.25 38.81 2.59
170 171 8.725405 TGAAATTTACAAAGTCACTGTAGACA 57.275 30.769 11.18 0.00 40.98 3.41
171 172 8.609176 TGAAATTTACAAAGTCACTGTAGACAC 58.391 33.333 11.18 0.00 40.98 3.67
172 173 8.732746 AAATTTACAAAGTCACTGTAGACACT 57.267 30.769 11.18 0.00 40.98 3.55
173 174 8.732746 AATTTACAAAGTCACTGTAGACACTT 57.267 30.769 11.18 1.99 40.98 3.16
174 175 7.766219 TTTACAAAGTCACTGTAGACACTTC 57.234 36.000 11.18 0.00 40.98 3.01
175 176 4.360563 ACAAAGTCACTGTAGACACTTCG 58.639 43.478 11.18 0.00 40.98 3.79
176 177 4.142227 ACAAAGTCACTGTAGACACTTCGT 60.142 41.667 11.18 0.00 40.98 3.85
177 178 3.900388 AGTCACTGTAGACACTTCGTC 57.100 47.619 11.18 0.00 45.77 4.20
215 216 3.205519 CCTAGTGGGATGGGGATATCA 57.794 52.381 4.83 0.00 37.23 2.15
216 217 3.531059 CCTAGTGGGATGGGGATATCAA 58.469 50.000 4.83 0.00 37.23 2.57
217 218 3.916349 CCTAGTGGGATGGGGATATCAAA 59.084 47.826 4.83 0.00 37.23 2.69
218 219 4.353788 CCTAGTGGGATGGGGATATCAAAA 59.646 45.833 4.83 0.00 37.23 2.44
219 220 5.015603 CCTAGTGGGATGGGGATATCAAAAT 59.984 44.000 4.83 0.00 37.23 1.82
220 221 5.003096 AGTGGGATGGGGATATCAAAATC 57.997 43.478 4.83 3.95 0.00 2.17
221 222 4.089361 GTGGGATGGGGATATCAAAATCC 58.911 47.826 16.13 16.13 44.14 3.01
232 233 7.929941 GGATATCAAAATCCCTCTAACCATC 57.070 40.000 4.83 0.00 39.74 3.51
233 234 7.694093 GGATATCAAAATCCCTCTAACCATCT 58.306 38.462 4.83 0.00 39.74 2.90
234 235 8.826765 GGATATCAAAATCCCTCTAACCATCTA 58.173 37.037 4.83 0.00 39.74 1.98
237 238 8.753497 ATCAAAATCCCTCTAACCATCTAAAC 57.247 34.615 0.00 0.00 0.00 2.01
238 239 7.116736 TCAAAATCCCTCTAACCATCTAAACC 58.883 38.462 0.00 0.00 0.00 3.27
239 240 6.652205 AAATCCCTCTAACCATCTAAACCA 57.348 37.500 0.00 0.00 0.00 3.67
240 241 5.632034 ATCCCTCTAACCATCTAAACCAC 57.368 43.478 0.00 0.00 0.00 4.16
241 242 4.431378 TCCCTCTAACCATCTAAACCACA 58.569 43.478 0.00 0.00 0.00 4.17
242 243 4.469945 TCCCTCTAACCATCTAAACCACAG 59.530 45.833 0.00 0.00 0.00 3.66
243 244 4.384208 CCCTCTAACCATCTAAACCACAGG 60.384 50.000 0.00 0.00 0.00 4.00
244 245 4.225267 CCTCTAACCATCTAAACCACAGGT 59.775 45.833 0.00 0.00 37.65 4.00
246 247 5.556915 TCTAACCATCTAAACCACAGGTTG 58.443 41.667 1.62 0.00 46.20 3.77
254 255 2.280524 CCACAGGTTGGTTCGCGA 60.281 61.111 3.71 3.71 41.10 5.87
255 256 2.317609 CCACAGGTTGGTTCGCGAG 61.318 63.158 9.59 0.00 41.10 5.03
256 257 2.030562 ACAGGTTGGTTCGCGAGG 59.969 61.111 9.59 0.00 0.00 4.63
257 258 2.742372 CAGGTTGGTTCGCGAGGG 60.742 66.667 9.59 0.00 0.00 4.30
258 259 4.699522 AGGTTGGTTCGCGAGGGC 62.700 66.667 9.59 3.75 0.00 5.19
260 261 3.723348 GTTGGTTCGCGAGGGCAC 61.723 66.667 9.59 4.21 39.92 5.01
302 303 6.693315 ATCAATACCAACCGAAAGTTATGG 57.307 37.500 0.00 0.00 36.18 2.74
303 304 4.944930 TCAATACCAACCGAAAGTTATGGG 59.055 41.667 0.00 0.00 36.18 4.00
304 305 2.963599 ACCAACCGAAAGTTATGGGT 57.036 45.000 0.00 0.00 36.18 4.51
305 306 3.232720 ACCAACCGAAAGTTATGGGTT 57.767 42.857 0.00 0.62 43.25 4.11
307 308 4.727677 ACCAACCGAAAGTTATGGGTTAA 58.272 39.130 5.20 0.00 40.64 2.01
308 309 4.520111 ACCAACCGAAAGTTATGGGTTAAC 59.480 41.667 0.00 0.00 40.64 2.01
352 357 3.244579 ACGTTTCTTGCGAGTACACTTTC 59.755 43.478 0.00 0.00 0.00 2.62
353 358 3.489785 CGTTTCTTGCGAGTACACTTTCT 59.510 43.478 0.00 0.00 0.00 2.52
385 393 1.595609 CTGACGAATTTGTTGCGAGC 58.404 50.000 0.00 0.00 0.00 5.03
404 412 3.545703 AGCAGTACTGATTAACCCATGC 58.454 45.455 27.08 7.13 0.00 4.06
414 422 6.611642 ACTGATTAACCCATGCTACTCTTCTA 59.388 38.462 0.00 0.00 0.00 2.10
415 423 7.291182 ACTGATTAACCCATGCTACTCTTCTAT 59.709 37.037 0.00 0.00 0.00 1.98
416 424 8.721133 TGATTAACCCATGCTACTCTTCTATA 57.279 34.615 0.00 0.00 0.00 1.31
417 425 8.807118 TGATTAACCCATGCTACTCTTCTATAG 58.193 37.037 0.00 0.00 0.00 1.31
418 426 5.476091 AACCCATGCTACTCTTCTATAGC 57.524 43.478 0.00 0.00 43.46 2.97
453 461 2.102578 GCATTAGTCAAGCAACCCCAT 58.897 47.619 0.00 0.00 0.00 4.00
460 468 1.002134 AAGCAACCCCATCTGGACG 60.002 57.895 0.00 0.00 37.39 4.79
509 517 0.768221 AGTCAGCCCTCCAACTGGAA 60.768 55.000 0.00 0.00 44.91 3.53
545 553 2.355837 TCTGCCGGAATATCGCGC 60.356 61.111 5.05 0.00 0.00 6.86
551 559 0.388520 CCGGAATATCGCGCTCATGA 60.389 55.000 5.56 0.00 0.00 3.07
560 568 1.690283 CGCGCTCATGACCTCAACAG 61.690 60.000 5.56 0.00 0.00 3.16
586 594 4.082665 ACATATTGCAGACAGATCCCTG 57.917 45.455 0.00 0.00 45.76 4.45
738 746 4.775746 CGAAGCTCTGACGGAGAC 57.224 61.111 15.80 6.55 44.45 3.36
862 880 1.817099 CTCCCTGCCATCGCTGTTC 60.817 63.158 0.00 0.00 35.36 3.18
881 899 2.915349 TCAAGGCTCTCTACGACGTAT 58.085 47.619 8.39 0.00 0.00 3.06
882 900 4.063998 TCAAGGCTCTCTACGACGTATA 57.936 45.455 8.39 0.09 0.00 1.47
883 901 3.806521 TCAAGGCTCTCTACGACGTATAC 59.193 47.826 8.39 0.00 0.00 1.47
886 904 5.207110 AGGCTCTCTACGACGTATACTAA 57.793 43.478 8.39 0.00 0.00 2.24
901 919 9.965748 GACGTATACTAACTATTATCTTCCGTC 57.034 37.037 0.56 0.00 0.00 4.79
978 1003 3.650369 CGGTTCTTGGTTCCGTGG 58.350 61.111 0.00 0.00 39.51 4.94
1623 1665 3.927758 CCTCGTCGATATCGTCAGAGTAT 59.072 47.826 27.52 0.00 40.80 2.12
1707 1749 0.990374 ACTTCAGCAAGAGGGCAGAT 59.010 50.000 0.00 0.00 35.83 2.90
1767 1809 1.055849 TCTGCAGCTCCTGTAACCAA 58.944 50.000 9.47 0.00 33.43 3.67
1773 1815 3.744660 CAGCTCCTGTAACCAACTTCTT 58.255 45.455 0.00 0.00 0.00 2.52
1779 1821 4.591498 TCCTGTAACCAACTTCTTCAGCTA 59.409 41.667 0.00 0.00 0.00 3.32
1852 1894 3.390135 TGCTCAGAGGTTGTTACTTTCG 58.610 45.455 0.00 0.00 0.00 3.46
1854 1896 4.246458 GCTCAGAGGTTGTTACTTTCGAT 58.754 43.478 0.00 0.00 0.00 3.59
1855 1897 4.691216 GCTCAGAGGTTGTTACTTTCGATT 59.309 41.667 0.00 0.00 0.00 3.34
1861 1903 5.758924 AGGTTGTTACTTTCGATTTCAAGC 58.241 37.500 0.00 0.00 33.82 4.01
1862 1904 4.915667 GGTTGTTACTTTCGATTTCAAGCC 59.084 41.667 0.00 0.00 0.00 4.35
1864 1906 6.072893 GGTTGTTACTTTCGATTTCAAGCCTA 60.073 38.462 0.00 0.00 0.00 3.93
1865 1907 7.357303 GTTGTTACTTTCGATTTCAAGCCTAA 58.643 34.615 0.00 0.00 0.00 2.69
1866 1908 7.499321 TGTTACTTTCGATTTCAAGCCTAAA 57.501 32.000 0.00 0.00 0.00 1.85
1867 1909 7.581476 TGTTACTTTCGATTTCAAGCCTAAAG 58.419 34.615 0.00 0.00 0.00 1.85
1868 1910 5.629079 ACTTTCGATTTCAAGCCTAAAGG 57.371 39.130 0.00 0.00 38.53 3.11
1869 1911 5.313712 ACTTTCGATTTCAAGCCTAAAGGA 58.686 37.500 0.00 0.00 37.39 3.36
1881 1923 5.248380 AGCCTAAAGGAGTGAAAGTTCAT 57.752 39.130 0.00 0.00 37.11 2.57
1899 1941 1.348696 CATCCGGTGATCCCATCATCA 59.651 52.381 0.00 0.00 40.45 3.07
1905 1947 4.139786 CGGTGATCCCATCATCATCTTTT 58.860 43.478 0.00 0.00 40.45 2.27
1911 1953 6.769341 TGATCCCATCATCATCTTTTAGTGTG 59.231 38.462 0.00 0.00 33.59 3.82
1952 1994 2.869503 GATCGCCGGGCTCCTCAAAA 62.870 60.000 18.34 0.00 0.00 2.44
2013 2055 3.965292 TTCGGTAGCTATCGACAGAAG 57.035 47.619 28.02 0.00 38.73 2.85
2046 2088 1.996191 GACAATCTGTCGCAGTCTTCC 59.004 52.381 6.72 0.00 37.67 3.46
2048 2090 1.728971 CAATCTGTCGCAGTCTTCCAC 59.271 52.381 6.72 0.00 32.61 4.02
2049 2091 0.969149 ATCTGTCGCAGTCTTCCACA 59.031 50.000 6.72 0.00 32.61 4.17
2110 2152 6.294731 GCCAAACAAGATCAGTCAGGTAAAAT 60.295 38.462 0.00 0.00 0.00 1.82
2115 2157 7.227156 ACAAGATCAGTCAGGTAAAATCTGTT 58.773 34.615 0.00 0.00 34.15 3.16
2200 2242 1.795286 GTCAGGTCGAAGCTTCAGTTG 59.205 52.381 25.47 16.58 0.00 3.16
2227 2269 0.482446 AATCAGTCCACAAGCCCCAA 59.518 50.000 0.00 0.00 0.00 4.12
2384 2426 5.754406 TGAAATGTGAACAAAAGAGCAATGG 59.246 36.000 0.00 0.00 0.00 3.16
2535 2577 2.042404 ATAGCAGGAGCAGCAGCCTC 62.042 60.000 3.93 0.00 45.49 4.70
2567 2609 4.702131 AGCTACAAGCAAAAGGTATGAAGG 59.298 41.667 1.22 0.00 45.56 3.46
2597 2639 5.220453 GCAAACAAGATGACAACAACTTTGG 60.220 40.000 0.00 0.00 37.10 3.28
2633 2675 7.305475 CGTTAATAAGAGATACGACAACTGCAG 60.305 40.741 13.48 13.48 34.36 4.41
2654 2696 5.343249 CAGCAAGGAAGGTTATAACAATGC 58.657 41.667 17.16 15.09 0.00 3.56
2655 2697 4.096382 AGCAAGGAAGGTTATAACAATGCG 59.904 41.667 17.16 1.05 35.37 4.73
2688 2730 7.886338 TCGATAGCATAACTAAGACATGTGAT 58.114 34.615 1.15 0.00 33.57 3.06
2711 2753 7.873505 TGATGAAGAGAGCATAGAAGATGATTG 59.126 37.037 0.00 0.00 0.00 2.67
2734 2776 3.745975 TGCTAAATCACTGTCCTCAAACG 59.254 43.478 0.00 0.00 0.00 3.60
2749 2791 2.690497 TCAAACGGTGAAAATGCCAAGA 59.310 40.909 0.00 0.00 31.51 3.02
2754 2796 2.095567 CGGTGAAAATGCCAAGAGAGTG 60.096 50.000 0.00 0.00 0.00 3.51
2756 2798 2.229784 GTGAAAATGCCAAGAGAGTGGG 59.770 50.000 0.00 0.00 39.26 4.61
2772 2814 2.489329 AGTGGGCAAAAATGAGTCATCG 59.511 45.455 5.98 0.00 0.00 3.84
2796 2838 5.162075 GTCAGTGAGCGAACAAATACTAGT 58.838 41.667 0.00 0.00 0.00 2.57
2799 2841 5.864474 CAGTGAGCGAACAAATACTAGTTCT 59.136 40.000 0.00 0.00 41.40 3.01
2805 2847 6.874134 AGCGAACAAATACTAGTTCTCATGTT 59.126 34.615 0.00 6.33 41.40 2.71
2949 2991 3.632145 ACAGTGTCAAGGTTTCCATCAAC 59.368 43.478 0.00 0.00 0.00 3.18
3040 3082 9.832445 GTTCATATTGGTAAGTCATTTCCTCTA 57.168 33.333 0.00 0.00 0.00 2.43
3056 3099 6.985188 TTCCTCTAATTGGAATTCAGAACG 57.015 37.500 7.93 0.00 38.53 3.95
3060 3103 6.402550 CCTCTAATTGGAATTCAGAACGTGTG 60.403 42.308 7.93 0.00 0.00 3.82
3135 3186 0.737219 GCATCATCTGCCCAGAACAC 59.263 55.000 1.62 0.00 45.66 3.32
3151 3202 6.053005 CCAGAACACACACTTTTCTTACCTA 58.947 40.000 0.00 0.00 0.00 3.08
3155 3208 5.374071 ACACACACTTTTCTTACCTAAGGG 58.626 41.667 0.00 0.00 34.14 3.95
3291 3344 3.199727 TGCCTGATTCCACTGCATAACTA 59.800 43.478 0.00 0.00 0.00 2.24
3298 3354 8.607441 TGATTCCACTGCATAACTATGTAATC 57.393 34.615 0.00 0.00 36.11 1.75
3301 3357 8.437360 TTCCACTGCATAACTATGTAATCTTG 57.563 34.615 0.00 0.00 36.11 3.02
3306 3362 7.557719 ACTGCATAACTATGTAATCTTGCCTTT 59.442 33.333 0.00 0.00 36.11 3.11
3378 3434 6.349944 GCCACTTCATCTTGAAATGATCACTT 60.350 38.462 0.00 0.00 35.82 3.16
3380 3436 7.027760 CACTTCATCTTGAAATGATCACTTGG 58.972 38.462 0.00 0.00 35.82 3.61
3456 3520 7.615582 TTGTATTCTTTAGTGATTGCTCCAG 57.384 36.000 0.00 0.00 0.00 3.86
3465 3529 5.102953 AGTGATTGCTCCAGTAAATGCTA 57.897 39.130 0.00 0.00 0.00 3.49
3466 3530 4.878397 AGTGATTGCTCCAGTAAATGCTAC 59.122 41.667 0.00 0.00 0.00 3.58
3467 3531 4.878397 GTGATTGCTCCAGTAAATGCTACT 59.122 41.667 0.00 0.00 0.00 2.57
3478 3542 7.829211 TCCAGTAAATGCTACTAGCTCAAAATT 59.171 33.333 9.49 0.00 42.97 1.82
3483 3547 8.792830 AAATGCTACTAGCTCAAAATTAGACA 57.207 30.769 9.49 0.00 42.97 3.41
3484 3548 7.778470 ATGCTACTAGCTCAAAATTAGACAC 57.222 36.000 9.49 0.00 42.97 3.67
3487 3551 6.763610 GCTACTAGCTCAAAATTAGACACCAT 59.236 38.462 0.35 0.00 38.45 3.55
3488 3552 7.926555 GCTACTAGCTCAAAATTAGACACCATA 59.073 37.037 0.35 0.00 38.45 2.74
3489 3553 9.988815 CTACTAGCTCAAAATTAGACACCATAT 57.011 33.333 0.00 0.00 0.00 1.78
3490 3554 8.668510 ACTAGCTCAAAATTAGACACCATATG 57.331 34.615 0.00 0.00 0.00 1.78
3491 3555 8.486210 ACTAGCTCAAAATTAGACACCATATGA 58.514 33.333 3.65 0.00 0.00 2.15
3492 3556 7.559590 AGCTCAAAATTAGACACCATATGAC 57.440 36.000 3.65 0.00 0.00 3.06
3493 3557 7.341805 AGCTCAAAATTAGACACCATATGACT 58.658 34.615 3.65 1.09 37.14 3.41
3494 3558 7.831193 AGCTCAAAATTAGACACCATATGACTT 59.169 33.333 3.65 0.00 34.92 3.01
3495 3559 8.462016 GCTCAAAATTAGACACCATATGACTTT 58.538 33.333 3.65 0.00 34.92 2.66
3496 3560 9.994432 CTCAAAATTAGACACCATATGACTTTC 57.006 33.333 3.65 0.00 34.92 2.62
3497 3561 9.513906 TCAAAATTAGACACCATATGACTTTCA 57.486 29.630 3.65 0.00 34.92 2.69
3500 3564 6.925610 TTAGACACCATATGACTTTCATGC 57.074 37.500 3.65 0.00 37.70 4.06
3501 3565 4.202441 AGACACCATATGACTTTCATGCC 58.798 43.478 3.65 0.00 37.70 4.40
3526 3590 0.110373 GCCTTTAACCAGACGCAACG 60.110 55.000 0.00 0.00 0.00 4.10
3527 3591 1.504359 CCTTTAACCAGACGCAACGA 58.496 50.000 0.00 0.00 0.00 3.85
3534 3598 1.066858 ACCAGACGCAACGATCTGATT 60.067 47.619 15.95 5.27 44.32 2.57
3535 3599 2.002586 CCAGACGCAACGATCTGATTT 58.997 47.619 15.95 0.00 44.32 2.17
3543 3607 5.232202 ACGCAACGATCTGATTTGTATACTG 59.768 40.000 4.17 0.00 0.00 2.74
3545 3609 6.019881 CGCAACGATCTGATTTGTATACTGAA 60.020 38.462 4.17 0.00 0.00 3.02
3549 3613 9.436957 AACGATCTGATTTGTATACTGAAAAGT 57.563 29.630 4.17 0.00 0.00 2.66
3600 3667 8.889717 GTTTGTACAATGTTACCATGTAGCTAT 58.110 33.333 9.56 0.00 0.00 2.97
3602 3669 9.456147 TTGTACAATGTTACCATGTAGCTATTT 57.544 29.630 3.59 0.00 0.00 1.40
3603 3670 9.456147 TGTACAATGTTACCATGTAGCTATTTT 57.544 29.630 0.00 0.00 0.00 1.82
3645 3712 2.561733 TCCGTTAGATCTTCAGCACG 57.438 50.000 0.00 2.52 0.00 5.34
3646 3713 1.816835 TCCGTTAGATCTTCAGCACGT 59.183 47.619 0.00 0.00 0.00 4.49
3654 3731 4.632153 AGATCTTCAGCACGTTTACAGTT 58.368 39.130 0.00 0.00 0.00 3.16
3657 3734 4.684877 TCTTCAGCACGTTTACAGTTACA 58.315 39.130 0.00 0.00 0.00 2.41
3680 3757 6.650390 ACATTTAATTCACAGGCATTGGAAAC 59.350 34.615 0.00 0.00 0.00 2.78
3681 3758 5.798125 TTAATTCACAGGCATTGGAAACA 57.202 34.783 0.00 0.00 39.83 2.83
3699 3777 8.189119 TGGAAACATCTTTAAAGCAAGGTAAT 57.811 30.769 10.51 0.00 33.40 1.89
3719 3797 9.892130 AGGTAATATAGTGTTTTCTCTCTTTGG 57.108 33.333 0.00 0.00 0.00 3.28
3773 3851 2.347490 GTCATGGGGCACGAGTGT 59.653 61.111 5.07 0.00 0.00 3.55
3794 3872 0.875059 GCGGCATTATCCCTGTAAGC 59.125 55.000 0.00 0.00 0.00 3.09
3796 3874 2.146342 CGGCATTATCCCTGTAAGCTG 58.854 52.381 0.00 0.00 0.00 4.24
3798 3876 3.406764 GGCATTATCCCTGTAAGCTGAG 58.593 50.000 0.00 0.00 0.00 3.35
3831 3909 2.356125 GGATGCTTTCCCTAGAACTGCA 60.356 50.000 0.00 5.52 42.30 4.41
3835 3913 3.263170 TGCTTTCCCTAGAACTGCATGTA 59.737 43.478 0.00 0.00 37.02 2.29
3853 3931 6.682423 CATGTATGCAAGACATAACCTTGA 57.318 37.500 15.14 0.00 42.88 3.02
3854 3932 6.489675 CATGTATGCAAGACATAACCTTGAC 58.510 40.000 15.14 0.00 42.88 3.18
3855 3933 4.941263 TGTATGCAAGACATAACCTTGACC 59.059 41.667 7.02 0.00 42.88 4.02
3856 3934 2.422597 TGCAAGACATAACCTTGACCG 58.577 47.619 7.02 0.00 42.57 4.79
3925 4003 1.270550 CAAGAATTGTGCTGGTGGGAC 59.729 52.381 0.00 0.00 42.34 4.46
3926 4004 0.773644 AGAATTGTGCTGGTGGGACT 59.226 50.000 0.00 0.00 37.18 3.85
3947 4025 3.788227 ACTGGAGTGCTTGTAAATGGA 57.212 42.857 0.00 0.00 0.00 3.41
4039 4117 7.827701 TCATATACCGTTGATATCTCAGGAAC 58.172 38.462 14.72 5.64 31.68 3.62
4088 4166 0.250727 TACGCAGCCTTGGAAAGCTT 60.251 50.000 0.00 0.00 44.44 3.74
4128 4207 3.691609 CCTTTACAGACTGCATTTCCTCC 59.308 47.826 1.25 0.00 0.00 4.30
4129 4208 4.326826 CTTTACAGACTGCATTTCCTCCA 58.673 43.478 1.25 0.00 0.00 3.86
4210 4301 6.554419 TCAACTCATTTTGAAGTCAACACTG 58.446 36.000 0.00 0.00 35.28 3.66
4224 4315 0.102844 ACACTGGTGCAACATTGTGC 59.897 50.000 25.10 0.00 45.15 4.57
4246 4337 5.068067 TGCCCAAGTAGTTTTTGGTTTCTAC 59.932 40.000 3.60 0.00 42.85 2.59
4345 4437 2.990066 CCCCCTGTGATTCACTACTC 57.010 55.000 17.26 0.00 35.11 2.59
4352 4448 4.498850 CCTGTGATTCACTACTCGAGATGG 60.499 50.000 21.68 10.68 35.11 3.51
4356 4452 5.689514 GTGATTCACTACTCGAGATGGATTG 59.310 44.000 21.68 7.11 0.00 2.67
4399 4501 4.980573 TGTAATAGGCCAAAGTCAGTGTT 58.019 39.130 5.01 0.00 0.00 3.32
4403 4505 1.212935 AGGCCAAAGTCAGTGTTGTCT 59.787 47.619 5.01 0.00 0.00 3.41
4404 4506 1.604278 GGCCAAAGTCAGTGTTGTCTC 59.396 52.381 0.00 0.00 0.00 3.36
4405 4507 2.288666 GCCAAAGTCAGTGTTGTCTCA 58.711 47.619 0.00 0.00 0.00 3.27
4406 4508 2.880890 GCCAAAGTCAGTGTTGTCTCAT 59.119 45.455 0.00 0.00 0.00 2.90
4407 4509 3.304257 GCCAAAGTCAGTGTTGTCTCATG 60.304 47.826 0.00 0.00 0.00 3.07
4408 4510 3.304257 CCAAAGTCAGTGTTGTCTCATGC 60.304 47.826 0.00 0.00 0.00 4.06
4424 4564 4.834496 TCTCATGCCTTCTTTGACCATTTT 59.166 37.500 0.00 0.00 0.00 1.82
4530 4670 1.208535 AGGTTGTCACTTTGGTCGTCA 59.791 47.619 0.00 0.00 0.00 4.35
4679 4824 8.981647 CAATTTCCTCTAAACCATGTTTTCTTG 58.018 33.333 0.00 0.00 0.00 3.02
4693 4838 6.533819 TGTTTTCTTGGTCATACACTAACG 57.466 37.500 0.00 0.00 0.00 3.18
4711 4856 8.487176 ACACTAACGATTTCAATTTTCAAATGC 58.513 29.630 0.00 0.00 0.00 3.56
5017 5167 1.691976 TGGTATATTCGGGCAGAGGTG 59.308 52.381 0.00 0.00 0.00 4.00
5097 5348 1.078143 GCAGTTCTCCCTCGGCATT 60.078 57.895 0.00 0.00 0.00 3.56
5101 5352 1.120530 GTTCTCCCTCGGCATTAGGA 58.879 55.000 0.06 0.00 36.08 2.94
5198 5450 9.699703 GAACCAACTGTAAATATCTATCTCTCC 57.300 37.037 0.00 0.00 0.00 3.71
5199 5451 9.440761 AACCAACTGTAAATATCTATCTCTCCT 57.559 33.333 0.00 0.00 0.00 3.69
5204 5456 9.196139 ACTGTAAATATCTATCTCTCCTATGCC 57.804 37.037 0.00 0.00 0.00 4.40
5205 5457 9.194972 CTGTAAATATCTATCTCTCCTATGCCA 57.805 37.037 0.00 0.00 0.00 4.92
5207 5459 7.430760 AAATATCTATCTCTCCTATGCCACC 57.569 40.000 0.00 0.00 0.00 4.61
5208 5460 4.690767 ATCTATCTCTCCTATGCCACCT 57.309 45.455 0.00 0.00 0.00 4.00
5212 5464 0.392336 CTCTCCTATGCCACCTCTGC 59.608 60.000 0.00 0.00 0.00 4.26
5213 5465 0.031716 TCTCCTATGCCACCTCTGCT 60.032 55.000 0.00 0.00 0.00 4.24
5214 5466 0.106335 CTCCTATGCCACCTCTGCTG 59.894 60.000 0.00 0.00 0.00 4.41
5247 5499 4.508861 GTGTGTGCTTTCTGAAATGCAAAT 59.491 37.500 20.70 0.00 44.32 2.32
5303 5558 8.408043 AATCACAATTATCTGTCAGTTTGGAA 57.592 30.769 0.00 0.00 0.00 3.53
5315 5570 4.026744 TCAGTTTGGAACATGGTTGGAAA 58.973 39.130 0.00 0.00 39.30 3.13
5316 5571 4.653341 TCAGTTTGGAACATGGTTGGAAAT 59.347 37.500 0.00 0.00 39.30 2.17
5317 5572 5.130145 TCAGTTTGGAACATGGTTGGAAATT 59.870 36.000 0.00 0.00 39.30 1.82
5318 5573 5.236911 CAGTTTGGAACATGGTTGGAAATTG 59.763 40.000 0.00 0.00 39.30 2.32
5319 5574 4.348863 TTGGAACATGGTTGGAAATTGG 57.651 40.909 0.00 0.00 39.30 3.16
5320 5575 3.581101 TGGAACATGGTTGGAAATTGGA 58.419 40.909 0.00 0.00 0.00 3.53
5321 5576 3.577848 TGGAACATGGTTGGAAATTGGAG 59.422 43.478 0.00 0.00 0.00 3.86
5329 5584 5.192927 TGGTTGGAAATTGGAGTGCTATAG 58.807 41.667 0.00 0.00 0.00 1.31
5344 5599 7.361457 AGTGCTATAGTAACATGGTGTACAT 57.639 36.000 0.00 0.00 41.57 2.29
5345 5600 8.473358 AGTGCTATAGTAACATGGTGTACATA 57.527 34.615 0.00 0.00 37.84 2.29
5346 5601 8.358148 AGTGCTATAGTAACATGGTGTACATAC 58.642 37.037 0.00 0.00 37.84 2.39
5347 5602 8.139350 GTGCTATAGTAACATGGTGTACATACA 58.861 37.037 0.00 1.85 37.84 2.29
5400 5655 3.674528 TCTTCTTGTCTGAAGAGCAGG 57.325 47.619 3.20 0.00 45.00 4.85
5401 5656 3.234353 TCTTCTTGTCTGAAGAGCAGGA 58.766 45.455 3.20 0.00 45.00 3.86
5402 5657 3.257873 TCTTCTTGTCTGAAGAGCAGGAG 59.742 47.826 3.20 0.00 45.00 3.69
5403 5658 1.274728 TCTTGTCTGAAGAGCAGGAGC 59.725 52.381 0.00 0.00 44.98 4.70
5404 5659 0.322975 TTGTCTGAAGAGCAGGAGCC 59.677 55.000 0.00 0.00 44.98 4.70
5405 5660 1.153667 GTCTGAAGAGCAGGAGCCG 60.154 63.158 0.00 0.00 44.98 5.52
5407 5662 4.087892 TGAAGAGCAGGAGCCGCC 62.088 66.667 0.00 0.00 43.56 6.13
5408 5663 4.087892 GAAGAGCAGGAGCCGCCA 62.088 66.667 0.00 0.00 43.56 5.69
5409 5664 3.612247 GAAGAGCAGGAGCCGCCAA 62.612 63.158 0.00 0.00 43.56 4.52
5410 5665 3.196207 AAGAGCAGGAGCCGCCAAA 62.196 57.895 0.00 0.00 43.56 3.28
5411 5666 2.439156 GAGCAGGAGCCGCCAAAT 60.439 61.111 0.00 0.00 43.56 2.32
5412 5667 2.439156 AGCAGGAGCCGCCAAATC 60.439 61.111 0.00 0.00 43.56 2.17
5413 5668 3.521796 GCAGGAGCCGCCAAATCC 61.522 66.667 0.00 0.00 40.02 3.01
5414 5669 2.273449 CAGGAGCCGCCAAATCCT 59.727 61.111 0.00 0.00 44.41 3.24
5415 5670 1.379044 CAGGAGCCGCCAAATCCTT 60.379 57.895 0.00 0.00 41.60 3.36
5416 5671 0.967380 CAGGAGCCGCCAAATCCTTT 60.967 55.000 0.00 0.00 41.60 3.11
5417 5672 0.681243 AGGAGCCGCCAAATCCTTTC 60.681 55.000 0.00 0.00 40.65 2.62
5418 5673 1.667154 GGAGCCGCCAAATCCTTTCC 61.667 60.000 0.00 0.00 36.34 3.13
5419 5674 1.993369 GAGCCGCCAAATCCTTTCCG 61.993 60.000 0.00 0.00 0.00 4.30
5452 5707 2.203552 TTGCCGGCACATGGGAAA 60.204 55.556 32.95 9.33 33.54 3.13
5477 5734 4.083271 GGTGGAAGCTGAAGTGAATACAAC 60.083 45.833 0.00 0.00 0.00 3.32
5493 5750 5.981088 ATACAACCTGCATGTTTGAATCA 57.019 34.783 4.46 0.00 32.27 2.57
5494 5751 4.877378 ACAACCTGCATGTTTGAATCAT 57.123 36.364 4.46 0.00 0.00 2.45
5495 5752 4.813027 ACAACCTGCATGTTTGAATCATC 58.187 39.130 4.46 0.00 0.00 2.92
5514 5771 8.749026 AATCATCTGAGTCAGCATATCTTTTT 57.251 30.769 15.72 0.00 0.00 1.94
5515 5772 7.549615 TCATCTGAGTCAGCATATCTTTTTG 57.450 36.000 15.72 1.00 0.00 2.44
5586 5848 6.349280 GCTATACAGTCAGAGATGATCAGTCC 60.349 46.154 0.09 0.00 0.00 3.85
5739 6023 1.805120 CGAACAACACTCCACGGACTT 60.805 52.381 0.00 0.00 0.00 3.01
5740 6024 2.285977 GAACAACACTCCACGGACTTT 58.714 47.619 0.00 0.00 0.00 2.66
5741 6025 2.413310 ACAACACTCCACGGACTTTT 57.587 45.000 0.00 0.00 0.00 2.27
5756 6040 3.563390 GGACTTTTGCTCCAGCTGATATC 59.437 47.826 17.39 1.68 42.66 1.63
5764 6048 3.443681 GCTCCAGCTGATATCTAGGACTC 59.556 52.174 17.39 0.00 38.21 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.541147 CGACCAACCATTTGTCATGCT 59.459 47.619 0.00 0.00 0.00 3.79
1 2 1.539388 TCGACCAACCATTTGTCATGC 59.461 47.619 0.00 0.00 0.00 4.06
2 3 4.439305 AATCGACCAACCATTTGTCATG 57.561 40.909 0.00 0.00 0.00 3.07
3 4 4.808558 CAAATCGACCAACCATTTGTCAT 58.191 39.130 0.00 0.00 34.25 3.06
4 5 3.551863 GCAAATCGACCAACCATTTGTCA 60.552 43.478 7.12 0.00 38.98 3.58
5 6 2.986479 GCAAATCGACCAACCATTTGTC 59.014 45.455 7.12 0.00 38.98 3.18
8 9 1.967066 TGGCAAATCGACCAACCATTT 59.033 42.857 0.00 0.00 31.46 2.32
9 10 1.626686 TGGCAAATCGACCAACCATT 58.373 45.000 0.00 0.00 31.46 3.16
10 11 1.545582 CTTGGCAAATCGACCAACCAT 59.454 47.619 0.00 0.00 40.98 3.55
11 12 0.958091 CTTGGCAAATCGACCAACCA 59.042 50.000 0.00 0.00 40.98 3.67
12 13 1.200020 CTCTTGGCAAATCGACCAACC 59.800 52.381 0.00 0.00 40.98 3.77
13 14 1.880027 ACTCTTGGCAAATCGACCAAC 59.120 47.619 0.00 0.00 40.98 3.77
14 15 2.270352 ACTCTTGGCAAATCGACCAA 57.730 45.000 0.00 5.24 43.59 3.67
15 16 2.270352 AACTCTTGGCAAATCGACCA 57.730 45.000 0.00 0.00 0.00 4.02
16 17 3.004315 TCAAAACTCTTGGCAAATCGACC 59.996 43.478 0.00 0.00 0.00 4.79
17 18 4.223320 TCAAAACTCTTGGCAAATCGAC 57.777 40.909 0.00 0.00 0.00 4.20
18 19 4.909696 TTCAAAACTCTTGGCAAATCGA 57.090 36.364 0.00 0.00 0.00 3.59
19 20 5.964887 TTTTCAAAACTCTTGGCAAATCG 57.035 34.783 0.00 0.00 0.00 3.34
20 21 6.634035 GCATTTTTCAAAACTCTTGGCAAATC 59.366 34.615 0.00 0.00 0.00 2.17
21 22 6.095160 TGCATTTTTCAAAACTCTTGGCAAAT 59.905 30.769 0.00 0.00 0.00 2.32
22 23 5.413833 TGCATTTTTCAAAACTCTTGGCAAA 59.586 32.000 0.00 0.00 0.00 3.68
23 24 4.940046 TGCATTTTTCAAAACTCTTGGCAA 59.060 33.333 0.00 0.00 0.00 4.52
24 25 4.511527 TGCATTTTTCAAAACTCTTGGCA 58.488 34.783 0.00 0.00 0.00 4.92
25 26 4.810491 TCTGCATTTTTCAAAACTCTTGGC 59.190 37.500 0.00 0.00 0.00 4.52
26 27 6.907206 TTCTGCATTTTTCAAAACTCTTGG 57.093 33.333 0.00 0.00 0.00 3.61
27 28 7.906527 CCTTTTCTGCATTTTTCAAAACTCTTG 59.093 33.333 0.00 0.00 0.00 3.02
28 29 7.823799 TCCTTTTCTGCATTTTTCAAAACTCTT 59.176 29.630 0.00 0.00 0.00 2.85
29 30 7.330262 TCCTTTTCTGCATTTTTCAAAACTCT 58.670 30.769 0.00 0.00 0.00 3.24
30 31 7.538303 TCCTTTTCTGCATTTTTCAAAACTC 57.462 32.000 0.00 0.00 0.00 3.01
31 32 8.510243 AATCCTTTTCTGCATTTTTCAAAACT 57.490 26.923 0.00 0.00 0.00 2.66
32 33 9.225201 GAAATCCTTTTCTGCATTTTTCAAAAC 57.775 29.630 0.00 0.00 38.56 2.43
33 34 8.954350 TGAAATCCTTTTCTGCATTTTTCAAAA 58.046 25.926 0.00 0.00 41.54 2.44
34 35 8.503458 TGAAATCCTTTTCTGCATTTTTCAAA 57.497 26.923 0.00 0.00 41.54 2.69
35 36 7.227116 CCTGAAATCCTTTTCTGCATTTTTCAA 59.773 33.333 0.00 0.00 41.54 2.69
36 37 6.707161 CCTGAAATCCTTTTCTGCATTTTTCA 59.293 34.615 0.00 0.00 41.54 2.69
37 38 6.707608 ACCTGAAATCCTTTTCTGCATTTTTC 59.292 34.615 0.00 0.00 41.54 2.29
38 39 6.484308 CACCTGAAATCCTTTTCTGCATTTTT 59.516 34.615 0.00 0.00 41.54 1.94
39 40 5.993441 CACCTGAAATCCTTTTCTGCATTTT 59.007 36.000 0.00 0.00 41.54 1.82
40 41 5.305128 TCACCTGAAATCCTTTTCTGCATTT 59.695 36.000 0.00 0.00 41.54 2.32
41 42 4.834496 TCACCTGAAATCCTTTTCTGCATT 59.166 37.500 0.00 0.00 41.54 3.56
42 43 4.410099 TCACCTGAAATCCTTTTCTGCAT 58.590 39.130 0.00 0.00 41.54 3.96
43 44 3.822735 CTCACCTGAAATCCTTTTCTGCA 59.177 43.478 0.00 0.00 41.54 4.41
44 45 3.192212 CCTCACCTGAAATCCTTTTCTGC 59.808 47.826 0.75 0.00 41.54 4.26
45 46 3.760684 CCCTCACCTGAAATCCTTTTCTG 59.239 47.826 0.75 0.39 41.54 3.02
46 47 3.815757 GCCCTCACCTGAAATCCTTTTCT 60.816 47.826 0.75 0.00 41.54 2.52
47 48 2.493675 GCCCTCACCTGAAATCCTTTTC 59.506 50.000 0.00 0.00 41.39 2.29
48 49 2.158325 TGCCCTCACCTGAAATCCTTTT 60.158 45.455 0.00 0.00 0.00 2.27
49 50 1.428912 TGCCCTCACCTGAAATCCTTT 59.571 47.619 0.00 0.00 0.00 3.11
50 51 1.075601 TGCCCTCACCTGAAATCCTT 58.924 50.000 0.00 0.00 0.00 3.36
51 52 1.213926 GATGCCCTCACCTGAAATCCT 59.786 52.381 0.00 0.00 0.00 3.24
52 53 1.685148 GATGCCCTCACCTGAAATCC 58.315 55.000 0.00 0.00 0.00 3.01
53 54 1.064463 TGGATGCCCTCACCTGAAATC 60.064 52.381 0.00 0.00 0.00 2.17
54 55 1.002069 TGGATGCCCTCACCTGAAAT 58.998 50.000 0.00 0.00 0.00 2.17
55 56 0.038166 GTGGATGCCCTCACCTGAAA 59.962 55.000 0.00 0.00 0.00 2.69
56 57 1.685224 GTGGATGCCCTCACCTGAA 59.315 57.895 0.00 0.00 0.00 3.02
57 58 3.403624 GTGGATGCCCTCACCTGA 58.596 61.111 0.00 0.00 0.00 3.86
66 67 1.073897 GCTCATAGGGGTGGATGCC 59.926 63.158 0.00 0.00 0.00 4.40
67 68 1.302033 CGCTCATAGGGGTGGATGC 60.302 63.158 0.00 0.00 0.00 3.91
68 69 1.302033 GCGCTCATAGGGGTGGATG 60.302 63.158 0.00 0.00 0.00 3.51
69 70 1.766059 TGCGCTCATAGGGGTGGAT 60.766 57.895 9.73 0.00 0.00 3.41
70 71 2.364973 TGCGCTCATAGGGGTGGA 60.365 61.111 9.73 0.00 0.00 4.02
71 72 2.203070 GTGCGCTCATAGGGGTGG 60.203 66.667 9.73 0.00 0.00 4.61
72 73 1.815421 GTGTGCGCTCATAGGGGTG 60.815 63.158 16.02 0.00 0.00 4.61
73 74 2.290287 TGTGTGCGCTCATAGGGGT 61.290 57.895 16.02 0.00 0.00 4.95
74 75 1.815421 GTGTGTGCGCTCATAGGGG 60.815 63.158 16.02 0.00 0.00 4.79
75 76 2.167219 CGTGTGTGCGCTCATAGGG 61.167 63.158 16.02 4.29 0.00 3.53
76 77 3.388134 CGTGTGTGCGCTCATAGG 58.612 61.111 16.02 14.35 0.00 2.57
85 86 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
86 87 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
87 88 1.192146 AGGATAGGGTGTGCGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
88 89 0.036388 AAGGATAGGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
89 90 1.563924 TAAGGATAGGGTGTGCGTGT 58.436 50.000 0.00 0.00 0.00 4.49
90 91 2.910688 ATAAGGATAGGGTGTGCGTG 57.089 50.000 0.00 0.00 0.00 5.34
91 92 3.244112 GCTAATAAGGATAGGGTGTGCGT 60.244 47.826 0.00 0.00 0.00 5.24
92 93 3.244078 TGCTAATAAGGATAGGGTGTGCG 60.244 47.826 0.00 0.00 0.00 5.34
93 94 4.065789 GTGCTAATAAGGATAGGGTGTGC 58.934 47.826 0.00 0.00 0.00 4.57
94 95 4.348168 AGGTGCTAATAAGGATAGGGTGTG 59.652 45.833 0.00 0.00 0.00 3.82
95 96 4.567857 AGGTGCTAATAAGGATAGGGTGT 58.432 43.478 0.00 0.00 0.00 4.16
96 97 5.568620 AAGGTGCTAATAAGGATAGGGTG 57.431 43.478 0.00 0.00 0.00 4.61
97 98 5.670361 TCAAAGGTGCTAATAAGGATAGGGT 59.330 40.000 0.00 0.00 0.00 4.34
98 99 6.187727 TCAAAGGTGCTAATAAGGATAGGG 57.812 41.667 0.00 0.00 0.00 3.53
99 100 7.993183 TCTTTCAAAGGTGCTAATAAGGATAGG 59.007 37.037 0.00 0.00 0.00 2.57
100 101 8.831550 GTCTTTCAAAGGTGCTAATAAGGATAG 58.168 37.037 0.00 0.00 0.00 2.08
101 102 8.548877 AGTCTTTCAAAGGTGCTAATAAGGATA 58.451 33.333 0.00 0.00 0.00 2.59
102 103 7.337942 CAGTCTTTCAAAGGTGCTAATAAGGAT 59.662 37.037 0.00 0.00 0.00 3.24
103 104 6.655003 CAGTCTTTCAAAGGTGCTAATAAGGA 59.345 38.462 0.00 0.00 0.00 3.36
104 105 6.655003 TCAGTCTTTCAAAGGTGCTAATAAGG 59.345 38.462 0.00 0.00 0.00 2.69
105 106 7.625185 GCTCAGTCTTTCAAAGGTGCTAATAAG 60.625 40.741 0.00 0.00 0.00 1.73
106 107 6.149474 GCTCAGTCTTTCAAAGGTGCTAATAA 59.851 38.462 0.00 0.00 0.00 1.40
107 108 5.643777 GCTCAGTCTTTCAAAGGTGCTAATA 59.356 40.000 0.00 0.00 0.00 0.98
108 109 4.457257 GCTCAGTCTTTCAAAGGTGCTAAT 59.543 41.667 0.00 0.00 0.00 1.73
109 110 3.815401 GCTCAGTCTTTCAAAGGTGCTAA 59.185 43.478 0.00 0.00 0.00 3.09
110 111 3.403038 GCTCAGTCTTTCAAAGGTGCTA 58.597 45.455 0.00 0.00 0.00 3.49
111 112 2.225467 GCTCAGTCTTTCAAAGGTGCT 58.775 47.619 0.00 0.00 0.00 4.40
112 113 1.268079 GGCTCAGTCTTTCAAAGGTGC 59.732 52.381 0.00 0.00 0.00 5.01
113 114 1.532868 CGGCTCAGTCTTTCAAAGGTG 59.467 52.381 0.00 0.00 0.00 4.00
114 115 1.543429 CCGGCTCAGTCTTTCAAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
115 116 1.160137 CCGGCTCAGTCTTTCAAAGG 58.840 55.000 0.00 0.00 0.00 3.11
116 117 1.884235 ACCGGCTCAGTCTTTCAAAG 58.116 50.000 0.00 0.00 0.00 2.77
117 118 3.695830 ATACCGGCTCAGTCTTTCAAA 57.304 42.857 0.00 0.00 0.00 2.69
118 119 4.404394 TGATATACCGGCTCAGTCTTTCAA 59.596 41.667 0.00 0.00 0.00 2.69
119 120 3.958147 TGATATACCGGCTCAGTCTTTCA 59.042 43.478 0.00 0.00 0.00 2.69
120 121 4.585955 TGATATACCGGCTCAGTCTTTC 57.414 45.455 0.00 0.00 0.00 2.62
121 122 4.835615 AGATGATATACCGGCTCAGTCTTT 59.164 41.667 0.00 0.00 0.00 2.52
122 123 4.411927 AGATGATATACCGGCTCAGTCTT 58.588 43.478 0.00 0.00 0.00 3.01
123 124 4.040936 AGATGATATACCGGCTCAGTCT 57.959 45.455 0.00 2.84 0.00 3.24
124 125 4.218635 TCAAGATGATATACCGGCTCAGTC 59.781 45.833 0.00 0.00 0.00 3.51
125 126 4.152647 TCAAGATGATATACCGGCTCAGT 58.847 43.478 0.00 0.00 0.00 3.41
126 127 4.790765 TCAAGATGATATACCGGCTCAG 57.209 45.455 0.00 0.00 0.00 3.35
127 128 5.545063 TTTCAAGATGATATACCGGCTCA 57.455 39.130 0.00 0.00 0.00 4.26
128 129 7.440523 AAATTTCAAGATGATATACCGGCTC 57.559 36.000 0.00 0.00 0.00 4.70
129 130 7.936847 TGTAAATTTCAAGATGATATACCGGCT 59.063 33.333 0.00 0.00 0.00 5.52
130 131 8.094798 TGTAAATTTCAAGATGATATACCGGC 57.905 34.615 0.00 0.00 0.00 6.13
138 139 9.903682 CAGTGACTTTGTAAATTTCAAGATGAT 57.096 29.630 10.26 0.00 0.00 2.45
139 140 8.902806 ACAGTGACTTTGTAAATTTCAAGATGA 58.097 29.630 0.00 0.00 0.00 2.92
142 143 9.607988 TCTACAGTGACTTTGTAAATTTCAAGA 57.392 29.630 0.00 0.00 31.17 3.02
143 144 9.651718 GTCTACAGTGACTTTGTAAATTTCAAG 57.348 33.333 0.00 0.00 34.39 3.02
144 145 9.168451 TGTCTACAGTGACTTTGTAAATTTCAA 57.832 29.630 0.00 0.00 37.79 2.69
145 146 8.609176 GTGTCTACAGTGACTTTGTAAATTTCA 58.391 33.333 0.00 0.00 37.79 2.69
146 147 8.827677 AGTGTCTACAGTGACTTTGTAAATTTC 58.172 33.333 0.00 0.00 37.79 2.17
147 148 8.732746 AGTGTCTACAGTGACTTTGTAAATTT 57.267 30.769 0.00 0.00 37.79 1.82
148 149 8.732746 AAGTGTCTACAGTGACTTTGTAAATT 57.267 30.769 0.00 0.00 37.79 1.82
149 150 7.169308 CGAAGTGTCTACAGTGACTTTGTAAAT 59.831 37.037 0.00 0.00 37.79 1.40
150 151 6.474427 CGAAGTGTCTACAGTGACTTTGTAAA 59.526 38.462 0.00 0.00 37.79 2.01
151 152 5.975344 CGAAGTGTCTACAGTGACTTTGTAA 59.025 40.000 0.00 0.00 37.79 2.41
152 153 5.066893 ACGAAGTGTCTACAGTGACTTTGTA 59.933 40.000 11.12 0.00 42.51 2.41
153 154 4.142227 ACGAAGTGTCTACAGTGACTTTGT 60.142 41.667 8.16 8.16 42.51 2.83
154 155 4.360563 ACGAAGTGTCTACAGTGACTTTG 58.639 43.478 0.00 2.24 42.51 2.77
155 156 4.650754 ACGAAGTGTCTACAGTGACTTT 57.349 40.909 0.00 0.00 42.51 2.66
175 176 0.697544 GTTACGTTTCCGTCGACGAC 59.302 55.000 37.65 25.89 46.28 4.34
176 177 0.385473 GGTTACGTTTCCGTCGACGA 60.385 55.000 37.65 21.13 46.28 4.20
177 178 1.337110 GGGTTACGTTTCCGTCGACG 61.337 60.000 30.33 30.33 46.28 5.12
178 179 0.039165 AGGGTTACGTTTCCGTCGAC 60.039 55.000 5.18 5.18 46.28 4.20
179 180 1.468520 CTAGGGTTACGTTTCCGTCGA 59.531 52.381 0.00 0.00 46.28 4.20
180 181 1.200020 ACTAGGGTTACGTTTCCGTCG 59.800 52.381 0.00 0.00 46.28 5.12
181 182 2.599659 CACTAGGGTTACGTTTCCGTC 58.400 52.381 0.00 0.00 46.28 4.79
183 184 2.000429 CCACTAGGGTTACGTTTCCG 58.000 55.000 0.00 0.00 40.83 4.30
195 196 3.205519 TGATATCCCCATCCCACTAGG 57.794 52.381 0.00 0.00 0.00 3.02
196 197 5.582950 TTTTGATATCCCCATCCCACTAG 57.417 43.478 0.00 0.00 0.00 2.57
197 198 5.015178 GGATTTTGATATCCCCATCCCACTA 59.985 44.000 10.92 0.00 38.53 2.74
198 199 4.202716 GGATTTTGATATCCCCATCCCACT 60.203 45.833 10.92 0.00 38.53 4.00
199 200 4.089361 GGATTTTGATATCCCCATCCCAC 58.911 47.826 10.92 0.00 38.53 4.61
200 201 4.402616 GGATTTTGATATCCCCATCCCA 57.597 45.455 10.92 0.00 38.53 4.37
208 209 7.694093 AGATGGTTAGAGGGATTTTGATATCC 58.306 38.462 0.00 0.00 42.84 2.59
211 212 9.847224 GTTTAGATGGTTAGAGGGATTTTGATA 57.153 33.333 0.00 0.00 0.00 2.15
212 213 7.780271 GGTTTAGATGGTTAGAGGGATTTTGAT 59.220 37.037 0.00 0.00 0.00 2.57
213 214 7.116736 GGTTTAGATGGTTAGAGGGATTTTGA 58.883 38.462 0.00 0.00 0.00 2.69
214 215 6.889722 TGGTTTAGATGGTTAGAGGGATTTTG 59.110 38.462 0.00 0.00 0.00 2.44
215 216 6.890268 GTGGTTTAGATGGTTAGAGGGATTTT 59.110 38.462 0.00 0.00 0.00 1.82
216 217 6.011981 TGTGGTTTAGATGGTTAGAGGGATTT 60.012 38.462 0.00 0.00 0.00 2.17
217 218 5.491078 TGTGGTTTAGATGGTTAGAGGGATT 59.509 40.000 0.00 0.00 0.00 3.01
218 219 5.036916 TGTGGTTTAGATGGTTAGAGGGAT 58.963 41.667 0.00 0.00 0.00 3.85
219 220 4.431378 TGTGGTTTAGATGGTTAGAGGGA 58.569 43.478 0.00 0.00 0.00 4.20
220 221 4.384208 CCTGTGGTTTAGATGGTTAGAGGG 60.384 50.000 0.00 0.00 0.00 4.30
221 222 4.225267 ACCTGTGGTTTAGATGGTTAGAGG 59.775 45.833 0.00 0.00 27.29 3.69
222 223 5.422214 ACCTGTGGTTTAGATGGTTAGAG 57.578 43.478 0.00 0.00 27.29 2.43
223 224 5.514136 CCAACCTGTGGTTTAGATGGTTAGA 60.514 44.000 0.00 0.00 44.33 2.10
224 225 4.700213 CCAACCTGTGGTTTAGATGGTTAG 59.300 45.833 0.00 0.00 44.33 2.34
225 226 4.658063 CCAACCTGTGGTTTAGATGGTTA 58.342 43.478 0.00 0.00 44.33 2.85
226 227 3.496331 CCAACCTGTGGTTTAGATGGTT 58.504 45.455 0.00 0.00 44.33 3.67
227 228 3.154827 CCAACCTGTGGTTTAGATGGT 57.845 47.619 0.00 0.00 44.33 3.55
238 239 2.317609 CCTCGCGAACCAACCTGTG 61.318 63.158 11.33 0.00 0.00 3.66
239 240 2.030562 CCTCGCGAACCAACCTGT 59.969 61.111 11.33 0.00 0.00 4.00
240 241 2.742372 CCCTCGCGAACCAACCTG 60.742 66.667 11.33 0.00 0.00 4.00
241 242 4.699522 GCCCTCGCGAACCAACCT 62.700 66.667 11.33 0.00 0.00 3.50
243 244 3.723348 GTGCCCTCGCGAACCAAC 61.723 66.667 11.33 2.91 38.08 3.77
252 253 3.536917 TATCAGCCCGTGCCCTCG 61.537 66.667 0.00 0.00 38.69 4.63
253 254 2.109181 GTATCAGCCCGTGCCCTC 59.891 66.667 0.00 0.00 38.69 4.30
254 255 1.635817 ATTGTATCAGCCCGTGCCCT 61.636 55.000 0.00 0.00 38.69 5.19
255 256 0.751643 AATTGTATCAGCCCGTGCCC 60.752 55.000 0.00 0.00 38.69 5.36
256 257 1.961793 TAATTGTATCAGCCCGTGCC 58.038 50.000 0.00 0.00 38.69 5.01
257 258 4.568152 AATTAATTGTATCAGCCCGTGC 57.432 40.909 0.00 0.00 37.95 5.34
258 259 7.433708 TGATAATTAATTGTATCAGCCCGTG 57.566 36.000 11.05 0.00 32.94 4.94
259 260 8.635765 ATTGATAATTAATTGTATCAGCCCGT 57.364 30.769 11.05 0.00 37.86 5.28
260 261 9.988350 GTATTGATAATTAATTGTATCAGCCCG 57.012 33.333 11.05 0.00 37.86 6.13
292 293 5.918576 GCAACACTGTTAACCCATAACTTTC 59.081 40.000 2.48 0.00 43.60 2.62
302 303 2.949644 ACTCCAAGCAACACTGTTAACC 59.050 45.455 2.48 0.00 0.00 2.85
303 304 5.744666 TTACTCCAAGCAACACTGTTAAC 57.255 39.130 0.00 0.00 0.00 2.01
304 305 7.221450 AGTATTACTCCAAGCAACACTGTTAA 58.779 34.615 0.00 0.00 0.00 2.01
305 306 6.765403 AGTATTACTCCAAGCAACACTGTTA 58.235 36.000 0.00 0.00 0.00 2.41
307 308 5.228945 AGTATTACTCCAAGCAACACTGT 57.771 39.130 0.00 0.00 0.00 3.55
308 309 5.288712 CGTAGTATTACTCCAAGCAACACTG 59.711 44.000 0.00 0.00 0.00 3.66
385 393 5.918608 AGTAGCATGGGTTAATCAGTACTG 58.081 41.667 17.17 17.17 0.00 2.74
418 426 2.354422 TGCCACGCGCATTTGTTG 60.354 55.556 5.73 0.00 44.64 3.33
453 461 3.691342 CAGAACGGGGCGTCCAGA 61.691 66.667 14.78 0.00 39.99 3.86
545 553 6.808008 ATGTTAAACTGTTGAGGTCATGAG 57.192 37.500 0.00 0.00 0.00 2.90
551 559 6.714810 TCTGCAATATGTTAAACTGTTGAGGT 59.285 34.615 0.00 0.00 0.00 3.85
560 568 6.543831 AGGGATCTGTCTGCAATATGTTAAAC 59.456 38.462 0.00 0.00 0.00 2.01
586 594 0.324943 ATGTACTGGTGTGACCTGCC 59.675 55.000 0.00 0.00 40.43 4.85
590 598 1.470979 CGGCTATGTACTGGTGTGACC 60.471 57.143 0.00 0.00 39.22 4.02
793 801 4.838486 GGAGAGCTCGTGACGGCG 62.838 72.222 8.37 4.80 0.00 6.46
798 806 1.139734 GCAATCGGAGAGCTCGTGA 59.860 57.895 8.37 8.05 43.63 4.35
799 807 2.226896 CGCAATCGGAGAGCTCGTG 61.227 63.158 8.37 2.13 43.63 4.35
847 865 1.651240 CCTTGAACAGCGATGGCAGG 61.651 60.000 5.32 3.20 43.41 4.85
862 880 3.808726 AGTATACGTCGTAGAGAGCCTTG 59.191 47.826 11.31 0.00 36.95 3.61
881 899 9.507329 AATACCGACGGAAGATAATAGTTAGTA 57.493 33.333 23.38 0.00 0.00 1.82
882 900 7.992754 ATACCGACGGAAGATAATAGTTAGT 57.007 36.000 23.38 0.00 0.00 2.24
883 901 8.728833 AGAATACCGACGGAAGATAATAGTTAG 58.271 37.037 23.38 0.00 0.00 2.34
886 904 6.941436 AGAGAATACCGACGGAAGATAATAGT 59.059 38.462 23.38 0.00 0.00 2.12
1358 1388 2.875485 GCTGGTCGTACGAGCTCA 59.125 61.111 37.80 25.15 44.94 4.26
1641 1683 1.134075 GTGCGAGTAGAGCGACGAA 59.866 57.895 0.00 0.00 37.44 3.85
1707 1749 4.143333 GTCGGCCGGCAGAAGCTA 62.143 66.667 31.05 5.74 41.70 3.32
1749 1791 1.160137 GTTGGTTACAGGAGCTGCAG 58.840 55.000 10.11 10.11 34.37 4.41
1767 1809 2.183679 CCAGGAGGTAGCTGAAGAAGT 58.816 52.381 0.00 0.00 0.00 3.01
1773 1815 1.839994 CATTTCCCAGGAGGTAGCTGA 59.160 52.381 0.00 0.00 36.75 4.26
1779 1821 0.706433 ATGTGCATTTCCCAGGAGGT 59.294 50.000 0.00 0.00 36.75 3.85
1852 1894 6.207614 ACTTTCACTCCTTTAGGCTTGAAATC 59.792 38.462 17.68 0.00 41.05 2.17
1854 1896 5.445964 ACTTTCACTCCTTTAGGCTTGAAA 58.554 37.500 16.95 16.95 40.35 2.69
1855 1897 5.048846 ACTTTCACTCCTTTAGGCTTGAA 57.951 39.130 0.00 7.44 35.34 2.69
1861 1903 4.631813 CGGATGAACTTTCACTCCTTTAGG 59.368 45.833 13.77 0.00 40.49 2.69
1862 1904 4.631813 CCGGATGAACTTTCACTCCTTTAG 59.368 45.833 0.00 0.00 40.49 1.85
1864 1906 3.181443 ACCGGATGAACTTTCACTCCTTT 60.181 43.478 9.46 3.77 40.49 3.11
1865 1907 2.372172 ACCGGATGAACTTTCACTCCTT 59.628 45.455 9.46 4.00 40.49 3.36
1866 1908 1.978580 ACCGGATGAACTTTCACTCCT 59.021 47.619 9.46 0.00 40.49 3.69
1867 1909 2.076863 CACCGGATGAACTTTCACTCC 58.923 52.381 9.46 2.83 40.49 3.85
1868 1910 3.040147 TCACCGGATGAACTTTCACTC 57.960 47.619 9.46 0.00 40.49 3.51
1869 1911 3.600388 GATCACCGGATGAACTTTCACT 58.400 45.455 9.46 0.00 41.93 3.41
1881 1923 1.625315 GATGATGATGGGATCACCGGA 59.375 52.381 9.46 0.00 43.01 5.14
1905 1947 3.879998 TCTCACACTTTTTGGCACACTA 58.120 40.909 0.00 0.00 39.29 2.74
1911 1953 2.287849 GGAGCTTCTCACACTTTTTGGC 60.288 50.000 0.00 0.00 31.08 4.52
1952 1994 4.537688 CCTCATATGGATACCACCCAGAAT 59.462 45.833 2.13 0.00 35.80 2.40
2013 2055 4.798574 ACAGATTGTCGGAAAAATTCTGC 58.201 39.130 10.19 0.00 35.98 4.26
2072 2114 4.947147 TTGGCCCGCGCTCTTTGT 62.947 61.111 5.56 0.00 34.44 2.83
2110 2152 3.827008 AGACTTGCTGACAGAAACAGA 57.173 42.857 6.65 0.00 37.54 3.41
2115 2157 4.692625 GCAAATCTAGACTTGCTGACAGAA 59.307 41.667 27.11 0.00 43.68 3.02
2200 2242 1.225855 TGTGGACTGATTGTGCGAAC 58.774 50.000 0.00 0.00 40.08 3.95
2227 2269 9.190317 GGGATCAACAAGTTTATCCTCTAAAAT 57.810 33.333 19.89 0.00 41.07 1.82
2384 2426 4.811557 CACTAAATCCATCCTTCCGACTTC 59.188 45.833 0.00 0.00 0.00 3.01
2494 2536 2.180204 CACTATTGGCCTTCCGCGG 61.180 63.158 22.12 22.12 38.94 6.46
2535 2577 4.668576 TTTGCTTGTAGCTTCATCTTCG 57.331 40.909 0.00 0.00 42.97 3.79
2567 2609 5.581605 TGTTGTCATCTTGTTTGCTCTTTC 58.418 37.500 0.00 0.00 0.00 2.62
2597 2639 7.096558 CGTATCTCTTATTAACGCCTTGAACTC 60.097 40.741 0.00 0.00 0.00 3.01
2633 2675 4.142469 ACGCATTGTTATAACCTTCCTTGC 60.142 41.667 13.01 10.88 0.00 4.01
2654 2696 5.907197 AGTTATGCTATCGAATCCAAACG 57.093 39.130 0.00 0.00 0.00 3.60
2655 2697 8.488764 GTCTTAGTTATGCTATCGAATCCAAAC 58.511 37.037 0.00 0.00 0.00 2.93
2688 2730 6.985059 CACAATCATCTTCTATGCTCTCTTCA 59.015 38.462 0.00 0.00 0.00 3.02
2711 2753 4.377431 CGTTTGAGGACAGTGATTTAGCAC 60.377 45.833 0.00 0.00 39.05 4.40
2734 2776 2.229784 CCACTCTCTTGGCATTTTCACC 59.770 50.000 0.00 0.00 0.00 4.02
2749 2791 3.228188 TGACTCATTTTTGCCCACTCT 57.772 42.857 0.00 0.00 0.00 3.24
2754 2796 1.818674 ACCGATGACTCATTTTTGCCC 59.181 47.619 0.00 0.00 0.00 5.36
2756 2798 3.189287 ACTGACCGATGACTCATTTTTGC 59.811 43.478 0.00 0.00 0.00 3.68
2772 2814 3.326747 AGTATTTGTTCGCTCACTGACC 58.673 45.455 0.00 0.00 0.00 4.02
2796 2838 4.698780 CCAGCATCAGAAGAAACATGAGAA 59.301 41.667 0.00 0.00 0.00 2.87
2799 2841 3.349927 CCCAGCATCAGAAGAAACATGA 58.650 45.455 0.00 0.00 0.00 3.07
2805 2847 2.470990 TCTAGCCCAGCATCAGAAGAA 58.529 47.619 0.00 0.00 0.00 2.52
2949 2991 1.863267 GCTCAGAGATTGGATGACCG 58.137 55.000 0.00 0.00 39.42 4.79
3040 3082 3.569701 AGCACACGTTCTGAATTCCAATT 59.430 39.130 2.27 0.00 0.00 2.32
3151 3202 0.469705 TTGATTGTGGCAGCACCCTT 60.470 50.000 0.00 0.00 37.83 3.95
3155 3208 1.198637 GTCTCTTGATTGTGGCAGCAC 59.801 52.381 0.00 0.00 0.00 4.40
3202 3255 7.276658 TCTCACCGCTAAACCATATTTATTCA 58.723 34.615 0.00 0.00 0.00 2.57
3211 3264 3.627395 TGATTCTCACCGCTAAACCAT 57.373 42.857 0.00 0.00 0.00 3.55
3219 3272 3.201290 ACTTCATCATGATTCTCACCGC 58.799 45.455 5.16 0.00 0.00 5.68
3301 3357 9.178758 TCCTTCTTTCTTTAGATTATGAAAGGC 57.821 33.333 12.41 0.00 43.04 4.35
3306 3362 9.911788 AGCATTCCTTCTTTCTTTAGATTATGA 57.088 29.630 0.00 0.00 0.00 2.15
3378 3434 8.318412 TCTATGAAAGAATGTACAAACTAGCCA 58.682 33.333 0.00 2.60 0.00 4.75
3380 3436 9.372369 AGTCTATGAAAGAATGTACAAACTAGC 57.628 33.333 0.00 0.00 35.47 3.42
3409 3473 9.417561 ACAAATCATTGATGAACCAGAATCTAT 57.582 29.630 0.00 0.00 40.69 1.98
3410 3474 8.812513 ACAAATCATTGATGAACCAGAATCTA 57.187 30.769 0.00 0.00 40.69 1.98
3443 3507 3.960571 AGCATTTACTGGAGCAATCACT 58.039 40.909 0.00 0.00 0.00 3.41
3465 3529 8.486210 TCATATGGTGTCTAATTTTGAGCTAGT 58.514 33.333 2.13 0.00 0.00 2.57
3466 3530 8.768955 GTCATATGGTGTCTAATTTTGAGCTAG 58.231 37.037 2.13 0.00 0.00 3.42
3467 3531 8.486210 AGTCATATGGTGTCTAATTTTGAGCTA 58.514 33.333 2.13 0.00 0.00 3.32
3478 3542 5.130975 AGGCATGAAAGTCATATGGTGTCTA 59.869 40.000 2.13 0.00 34.28 2.59
3482 3546 3.949754 ACAGGCATGAAAGTCATATGGTG 59.050 43.478 4.84 0.00 34.28 4.17
3483 3547 4.080129 AGACAGGCATGAAAGTCATATGGT 60.080 41.667 4.84 0.00 34.28 3.55
3484 3548 4.275196 CAGACAGGCATGAAAGTCATATGG 59.725 45.833 4.84 0.00 34.28 2.74
3487 3551 3.273434 GCAGACAGGCATGAAAGTCATA 58.727 45.455 4.84 0.00 34.28 2.15
3488 3552 2.089980 GCAGACAGGCATGAAAGTCAT 58.910 47.619 4.84 0.00 37.65 3.06
3489 3553 1.527034 GCAGACAGGCATGAAAGTCA 58.473 50.000 4.84 0.00 33.56 3.41
3490 3554 0.807496 GGCAGACAGGCATGAAAGTC 59.193 55.000 4.84 0.00 43.51 3.01
3491 3555 2.952714 GGCAGACAGGCATGAAAGT 58.047 52.632 4.84 0.00 43.51 2.66
3499 3563 1.168714 CTGGTTAAAGGCAGACAGGC 58.831 55.000 0.00 0.00 44.61 4.85
3500 3564 2.427506 GTCTGGTTAAAGGCAGACAGG 58.572 52.381 0.00 0.00 42.43 4.00
3501 3565 2.069273 CGTCTGGTTAAAGGCAGACAG 58.931 52.381 3.64 0.00 42.86 3.51
3605 3672 9.915629 AACGGAATTGCAACAAGTTATAATTTA 57.084 25.926 0.00 0.00 0.00 1.40
3606 3673 8.825667 AACGGAATTGCAACAAGTTATAATTT 57.174 26.923 0.00 0.00 0.00 1.82
3607 3674 9.567848 CTAACGGAATTGCAACAAGTTATAATT 57.432 29.630 0.00 6.39 0.00 1.40
3608 3675 8.952278 TCTAACGGAATTGCAACAAGTTATAAT 58.048 29.630 0.00 0.00 0.00 1.28
3645 3712 9.124807 GCCTGTGAATTAAATGTAACTGTAAAC 57.875 33.333 0.00 0.00 0.00 2.01
3646 3713 8.851145 TGCCTGTGAATTAAATGTAACTGTAAA 58.149 29.630 0.00 0.00 0.00 2.01
3654 3731 7.473735 TTCCAATGCCTGTGAATTAAATGTA 57.526 32.000 0.00 0.00 0.00 2.29
3657 3734 6.767456 TGTTTCCAATGCCTGTGAATTAAAT 58.233 32.000 0.00 0.00 0.00 1.40
3719 3797 4.201783 GCACGTTGGTCATACCTGAATTAC 60.202 45.833 0.00 0.00 39.58 1.89
3773 3851 2.289444 GCTTACAGGGATAATGCCGCTA 60.289 50.000 0.00 0.00 30.73 4.26
3794 3872 2.686915 GCATCCCATGGAAAAGACTCAG 59.313 50.000 15.22 0.00 34.34 3.35
3796 3874 3.010200 AGCATCCCATGGAAAAGACTC 57.990 47.619 15.22 0.00 34.34 3.36
3798 3876 3.118992 GGAAAGCATCCCATGGAAAAGAC 60.119 47.826 15.22 0.00 43.00 3.01
3831 3909 5.590259 GGTCAAGGTTATGTCTTGCATACAT 59.410 40.000 16.67 16.67 39.57 2.29
3835 3913 3.009723 CGGTCAAGGTTATGTCTTGCAT 58.990 45.455 0.00 0.00 40.82 3.96
3840 3918 2.496470 GAGACCGGTCAAGGTTATGTCT 59.504 50.000 35.00 10.89 46.09 3.41
3842 3920 2.496470 GAGAGACCGGTCAAGGTTATGT 59.504 50.000 35.00 12.23 46.09 2.29
3846 3924 1.645710 ATGAGAGACCGGTCAAGGTT 58.354 50.000 35.00 15.47 46.09 3.50
3850 3928 2.151202 GCAAAATGAGAGACCGGTCAA 58.849 47.619 35.00 18.24 0.00 3.18
3851 3929 1.071542 TGCAAAATGAGAGACCGGTCA 59.928 47.619 35.00 16.83 0.00 4.02
3852 3930 1.734465 CTGCAAAATGAGAGACCGGTC 59.266 52.381 27.67 27.67 0.00 4.79
3853 3931 1.813513 CTGCAAAATGAGAGACCGGT 58.186 50.000 6.92 6.92 0.00 5.28
3854 3932 0.449388 GCTGCAAAATGAGAGACCGG 59.551 55.000 0.00 0.00 0.00 5.28
3855 3933 0.449388 GGCTGCAAAATGAGAGACCG 59.551 55.000 0.50 0.00 0.00 4.79
3856 3934 1.538047 TGGCTGCAAAATGAGAGACC 58.462 50.000 0.50 0.00 0.00 3.85
3917 3995 1.192146 GCACTCCAGTAGTCCCACCA 61.192 60.000 0.00 0.00 35.76 4.17
3925 4003 4.832248 TCCATTTACAAGCACTCCAGTAG 58.168 43.478 0.00 0.00 0.00 2.57
3926 4004 4.901197 TCCATTTACAAGCACTCCAGTA 57.099 40.909 0.00 0.00 0.00 2.74
3947 4025 7.875041 TCGAAATCTTTCTGATGAAGTTCTCTT 59.125 33.333 4.17 0.00 35.21 2.85
4039 4117 2.998670 CCAGTTGTAGCATCAGTCACAG 59.001 50.000 0.00 0.00 0.00 3.66
4045 4123 1.002366 GTCGCCAGTTGTAGCATCAG 58.998 55.000 0.00 0.00 0.00 2.90
4053 4131 1.069500 GCGTAATTTGTCGCCAGTTGT 60.069 47.619 9.94 0.00 45.54 3.32
4088 4166 3.083122 AGGAGAACTTACGTAGGAGCA 57.917 47.619 12.14 0.00 0.00 4.26
4128 4207 8.532186 ACATATAGATATAGCCCACTCTTCTG 57.468 38.462 0.00 0.00 0.00 3.02
4156 4247 8.205131 TCCTTTTATACGAGGATAGCAAAAAC 57.795 34.615 0.00 0.00 37.15 2.43
4168 4259 8.306680 TGAGTTGAAGTTTCCTTTTATACGAG 57.693 34.615 0.00 0.00 0.00 4.18
4200 4291 2.057137 ATGTTGCACCAGTGTTGACT 57.943 45.000 0.00 0.00 0.00 3.41
4203 4294 2.195096 CACAATGTTGCACCAGTGTTG 58.805 47.619 14.94 4.60 40.42 3.33
4210 4301 0.600782 CTTGGGCACAATGTTGCACC 60.601 55.000 0.00 7.56 46.12 5.01
4224 4315 6.702716 TGTAGAAACCAAAAACTACTTGGG 57.297 37.500 6.55 0.00 46.48 4.12
4254 4345 4.765339 CCAGGGAAATTTTACCGAAGAGTT 59.235 41.667 4.71 0.00 0.00 3.01
4256 4347 3.128764 GCCAGGGAAATTTTACCGAAGAG 59.871 47.826 4.71 0.00 0.00 2.85
4345 4437 3.930336 TGCTATTAGGCAATCCATCTCG 58.070 45.455 0.00 0.00 39.43 4.04
4352 4448 2.373502 AGTCCCCTGCTATTAGGCAATC 59.626 50.000 0.00 0.00 41.94 2.67
4399 4501 2.106338 TGGTCAAAGAAGGCATGAGACA 59.894 45.455 0.00 0.00 0.00 3.41
4403 4505 5.549742 AAAAATGGTCAAAGAAGGCATGA 57.450 34.783 0.00 0.00 0.00 3.07
4439 4579 5.897050 ACAACGATTGAGCAAAAGGTTTAA 58.103 33.333 0.00 0.00 0.00 1.52
4451 4591 6.138546 CGTGTAGAAAACAAACAACGATTGAG 59.861 38.462 0.00 0.00 40.63 3.02
4457 4597 6.016718 TCTTTCGTGTAGAAAACAAACAACG 58.983 36.000 0.00 0.00 46.98 4.10
4628 4772 8.963725 TGATAAAGACAATTTGCTGATCAAGAT 58.036 29.630 0.00 0.00 35.84 2.40
4629 4773 8.339344 TGATAAAGACAATTTGCTGATCAAGA 57.661 30.769 0.00 0.00 35.84 3.02
4630 4774 8.975410 TTGATAAAGACAATTTGCTGATCAAG 57.025 30.769 16.64 0.00 35.84 3.02
4631 4775 9.932207 AATTGATAAAGACAATTTGCTGATCAA 57.068 25.926 19.42 19.42 42.73 2.57
4644 4788 9.753674 ATGGTTTAGAGGAAATTGATAAAGACA 57.246 29.630 0.00 0.00 0.00 3.41
4676 4821 6.961359 TGAAATCGTTAGTGTATGACCAAG 57.039 37.500 0.00 0.00 0.00 3.61
4679 4824 9.274065 GAAAATTGAAATCGTTAGTGTATGACC 57.726 33.333 0.00 0.00 0.00 4.02
4693 4838 7.901377 CGATTCTGGCATTTGAAAATTGAAATC 59.099 33.333 0.00 0.00 29.02 2.17
4711 4856 3.000724 GCGTTTCATCTTCTCGATTCTGG 59.999 47.826 0.00 0.00 0.00 3.86
4877 5026 6.066032 AGAAGTAGTATGGTCTAGAAGGCTC 58.934 44.000 0.00 0.00 0.00 4.70
5017 5167 1.903183 ACAGGAGGAACTTGGAGCTAC 59.097 52.381 0.00 0.00 41.55 3.58
5097 5348 3.525609 TGGTACATTCCAATGCCTTCCTA 59.474 43.478 0.00 0.00 40.04 2.94
5101 5352 3.456380 ACTGGTACATTCCAATGCCTT 57.544 42.857 0.00 0.00 40.04 4.35
5194 5446 0.031716 AGCAGAGGTGGCATAGGAGA 60.032 55.000 0.00 0.00 0.00 3.71
5195 5447 0.106335 CAGCAGAGGTGGCATAGGAG 59.894 60.000 0.00 0.00 0.00 3.69
5196 5448 1.340399 CCAGCAGAGGTGGCATAGGA 61.340 60.000 1.95 0.00 44.28 2.94
5197 5449 1.147824 CCAGCAGAGGTGGCATAGG 59.852 63.158 1.95 0.00 44.28 2.57
5198 5450 4.872357 CCAGCAGAGGTGGCATAG 57.128 61.111 1.95 0.00 44.28 2.23
5205 5457 4.990910 AGCCACCCCAGCAGAGGT 62.991 66.667 0.00 0.00 36.58 3.85
5207 5459 4.421515 CCAGCCACCCCAGCAGAG 62.422 72.222 0.00 0.00 0.00 3.35
5212 5464 3.889692 ACACACCAGCCACCCCAG 61.890 66.667 0.00 0.00 0.00 4.45
5213 5465 4.202574 CACACACCAGCCACCCCA 62.203 66.667 0.00 0.00 0.00 4.96
5247 5499 2.404559 AGACAGGTGTACAAACCAGGA 58.595 47.619 0.00 0.00 43.20 3.86
5272 5524 6.127338 ACTGACAGATAATTGTGATTCTCGGA 60.127 38.462 10.08 0.00 0.00 4.55
5303 5558 2.299867 GCACTCCAATTTCCAACCATGT 59.700 45.455 0.00 0.00 0.00 3.21
5315 5570 6.126768 ACACCATGTTACTATAGCACTCCAAT 60.127 38.462 0.00 0.00 0.00 3.16
5316 5571 5.188948 ACACCATGTTACTATAGCACTCCAA 59.811 40.000 0.00 0.00 0.00 3.53
5317 5572 4.714802 ACACCATGTTACTATAGCACTCCA 59.285 41.667 0.00 0.00 0.00 3.86
5318 5573 5.277857 ACACCATGTTACTATAGCACTCC 57.722 43.478 0.00 0.00 0.00 3.85
5319 5574 6.802608 TGTACACCATGTTACTATAGCACTC 58.197 40.000 0.00 0.00 0.00 3.51
5320 5575 6.785337 TGTACACCATGTTACTATAGCACT 57.215 37.500 0.00 0.00 0.00 4.40
5321 5576 8.139350 TGTATGTACACCATGTTACTATAGCAC 58.861 37.037 0.00 0.00 34.86 4.40
5329 5584 6.984474 AGCAGTATGTATGTACACCATGTTAC 59.016 38.462 16.39 7.40 39.30 2.50
5344 5599 3.961480 ACAGAGTTGCAGCAGTATGTA 57.039 42.857 2.55 0.00 39.31 2.29
5345 5600 2.847327 ACAGAGTTGCAGCAGTATGT 57.153 45.000 2.55 0.00 39.31 2.29
5346 5601 4.494350 AAAACAGAGTTGCAGCAGTATG 57.506 40.909 2.55 0.00 40.87 2.39
5400 5655 1.809869 GGAAAGGATTTGGCGGCTC 59.190 57.895 11.43 0.00 39.27 4.70
5401 5656 2.046285 CGGAAAGGATTTGGCGGCT 61.046 57.895 11.43 0.00 39.27 5.52
5402 5657 1.873270 AACGGAAAGGATTTGGCGGC 61.873 55.000 0.00 0.00 39.27 6.53
5403 5658 0.170339 GAACGGAAAGGATTTGGCGG 59.830 55.000 0.00 0.00 39.27 6.13
5404 5659 1.130561 GAGAACGGAAAGGATTTGGCG 59.869 52.381 0.00 0.00 39.27 5.69
5405 5660 1.472878 GGAGAACGGAAAGGATTTGGC 59.527 52.381 0.00 0.00 39.27 4.52
5407 5662 1.737793 CGGGAGAACGGAAAGGATTTG 59.262 52.381 0.00 0.00 39.27 2.32
5408 5663 2.109425 CGGGAGAACGGAAAGGATTT 57.891 50.000 0.00 0.00 43.98 2.17
5409 5664 3.855159 CGGGAGAACGGAAAGGATT 57.145 52.632 0.00 0.00 0.00 3.01
5418 5673 0.796312 CAACATTGACCGGGAGAACG 59.204 55.000 6.32 0.00 0.00 3.95
5419 5674 0.521735 GCAACATTGACCGGGAGAAC 59.478 55.000 6.32 0.00 0.00 3.01
5452 5707 1.140312 TTCACTTCAGCTTCCACCCT 58.860 50.000 0.00 0.00 0.00 4.34
5477 5734 4.398358 ACTCAGATGATTCAAACATGCAGG 59.602 41.667 0.00 0.00 0.00 4.85
5493 5750 7.934855 AACAAAAAGATATGCTGACTCAGAT 57.065 32.000 10.45 3.71 32.44 2.90
5494 5751 7.750229 AAACAAAAAGATATGCTGACTCAGA 57.250 32.000 10.45 0.00 32.44 3.27
5495 5752 9.897744 TTAAAACAAAAAGATATGCTGACTCAG 57.102 29.630 1.21 1.21 34.12 3.35
5514 5771 4.451096 GTCAGCTTGACTCGGATTAAAACA 59.549 41.667 8.50 0.00 43.73 2.83
5515 5772 4.959149 GTCAGCTTGACTCGGATTAAAAC 58.041 43.478 8.50 0.00 43.73 2.43
5586 5848 4.092091 GGTAAGCAAGACAACTGAAGATCG 59.908 45.833 0.00 0.00 0.00 3.69
5667 5941 4.402056 TCCTCTCCGGTGAATAAACATC 57.598 45.455 7.75 0.00 0.00 3.06
5739 6023 4.039730 GTCCTAGATATCAGCTGGAGCAAA 59.960 45.833 15.13 0.00 45.16 3.68
5740 6024 3.576118 GTCCTAGATATCAGCTGGAGCAA 59.424 47.826 15.13 0.00 45.16 3.91
5741 6025 3.161067 GTCCTAGATATCAGCTGGAGCA 58.839 50.000 15.13 0.00 45.16 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.