Multiple sequence alignment - TraesCS1A01G425000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G425000 chr1A 100.000 6890 0 0 1 6890 579870203 579863314 0.000000e+00 12724.0
1 TraesCS1A01G425000 chr1A 93.487 522 25 2 1873 2387 401547524 401547005 0.000000e+00 767.0
2 TraesCS1A01G425000 chr1A 97.283 184 5 0 3175 3358 401546946 401546763 5.190000e-81 313.0
3 TraesCS1A01G425000 chr1A 92.857 210 14 1 1032 1241 401548900 401548692 3.120000e-78 303.0
4 TraesCS1A01G425000 chr1A 91.111 90 6 2 2393 2482 401547023 401546936 3.380000e-23 121.0
5 TraesCS1A01G425000 chr1D 92.940 5680 244 66 524 6143 483150151 483144569 0.000000e+00 8122.0
6 TraesCS1A01G425000 chr1D 83.644 966 108 32 2924 3858 492945937 492946883 0.000000e+00 863.0
7 TraesCS1A01G425000 chr1D 80.416 1154 151 42 3944 5063 492946936 492948048 0.000000e+00 809.0
8 TraesCS1A01G425000 chr1D 91.984 499 30 4 6397 6889 483144332 483143838 0.000000e+00 691.0
9 TraesCS1A01G425000 chr1D 82.074 569 53 27 5314 5864 492948573 492949110 2.280000e-119 440.0
10 TraesCS1A01G425000 chr1D 84.942 259 30 5 5069 5326 492948143 492948393 3.190000e-63 254.0
11 TraesCS1A01G425000 chr1D 97.500 40 1 0 496 535 483150205 483150166 1.240000e-07 69.4
12 TraesCS1A01G425000 chr1B 87.912 2308 143 82 547 2783 673182475 673180233 0.000000e+00 2591.0
13 TraesCS1A01G425000 chr1B 93.292 1610 66 18 4559 6143 673177599 673176007 0.000000e+00 2337.0
14 TraesCS1A01G425000 chr1B 88.259 1959 151 44 2656 4573 673180239 673178319 0.000000e+00 2270.0
15 TraesCS1A01G425000 chr1B 83.402 970 109 30 2930 3867 688710132 688709183 0.000000e+00 852.0
16 TraesCS1A01G425000 chr1B 80.328 1159 157 39 3941 5063 688708954 688707831 0.000000e+00 811.0
17 TraesCS1A01G425000 chr1B 88.333 660 41 9 6262 6890 673175717 673175063 0.000000e+00 760.0
18 TraesCS1A01G425000 chr1B 81.803 588 53 32 5314 5873 688707302 688706741 1.760000e-120 444.0
19 TraesCS1A01G425000 chr1B 91.667 72 5 1 5 76 673183787 673183717 1.580000e-16 99.0
20 TraesCS1A01G425000 chr6A 93.057 821 35 11 1585 2387 574610508 574609692 0.000000e+00 1181.0
21 TraesCS1A01G425000 chr6A 92.324 482 20 6 1920 2387 201107718 201108196 0.000000e+00 669.0
22 TraesCS1A01G425000 chr6A 94.595 296 14 1 1031 1326 574610791 574610498 2.260000e-124 457.0
23 TraesCS1A01G425000 chr6A 93.581 296 17 1 1031 1326 201107123 201107416 2.280000e-119 440.0
24 TraesCS1A01G425000 chr6A 89.644 309 18 9 1585 1881 201107406 201107712 1.400000e-101 381.0
25 TraesCS1A01G425000 chr6A 96.757 185 6 0 3175 3359 201108255 201108439 6.710000e-80 309.0
26 TraesCS1A01G425000 chr6A 95.745 188 8 0 3175 3362 574609633 574609446 3.120000e-78 303.0
27 TraesCS1A01G425000 chr6A 92.308 91 5 1 2383 2473 201108168 201108256 2.020000e-25 128.0
28 TraesCS1A01G425000 chr6A 91.209 91 6 1 2392 2482 574609711 574609623 9.380000e-24 122.0
29 TraesCS1A01G425000 chr5A 92.416 778 39 9 1628 2387 27124795 27124020 0.000000e+00 1092.0
30 TraesCS1A01G425000 chr5A 96.809 188 6 0 3175 3362 27123961 27123774 1.440000e-81 315.0
31 TraesCS1A01G425000 chr5A 90.995 211 19 0 1031 1241 27126185 27125975 1.130000e-72 285.0
32 TraesCS1A01G425000 chr5A 93.939 132 8 0 3231 3362 420632678 420632547 4.210000e-47 200.0
33 TraesCS1A01G425000 chr5A 92.683 82 6 0 2401 2482 27124032 27123951 1.210000e-22 119.0
34 TraesCS1A01G425000 chr4A 91.142 779 44 11 1628 2387 550326876 550326104 0.000000e+00 1033.0
35 TraesCS1A01G425000 chr4A 95.745 188 8 0 3175 3362 550326045 550325858 3.120000e-78 303.0
36 TraesCS1A01G425000 chr4A 92.308 91 5 2 2392 2482 550326123 550326035 2.020000e-25 128.0
37 TraesCS1A01G425000 chr3B 86.726 226 21 2 6671 6890 446137817 446138039 6.900000e-60 243.0
38 TraesCS1A01G425000 chr2A 93.590 156 10 0 1081 1236 647178862 647179017 4.160000e-57 233.0
39 TraesCS1A01G425000 chr2A 94.891 137 7 0 3175 3311 647195222 647195358 1.510000e-51 215.0
40 TraesCS1A01G425000 chr2A 88.950 181 9 7 1626 1795 647180194 647180374 5.410000e-51 213.0
41 TraesCS1A01G425000 chr2A 90.714 140 9 1 1792 1931 647195084 647195219 4.240000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G425000 chr1A 579863314 579870203 6889 True 12724.000000 12724 100.000000 1 6890 1 chr1A.!!$R1 6889
1 TraesCS1A01G425000 chr1A 401546763 401548900 2137 True 376.000000 767 93.684500 1032 3358 4 chr1A.!!$R2 2326
2 TraesCS1A01G425000 chr1D 483143838 483150205 6367 True 2960.800000 8122 94.141333 496 6889 3 chr1D.!!$R1 6393
3 TraesCS1A01G425000 chr1D 492945937 492949110 3173 False 591.500000 863 82.769000 2924 5864 4 chr1D.!!$F1 2940
4 TraesCS1A01G425000 chr1B 673175063 673183787 8724 True 1611.400000 2591 89.892600 5 6890 5 chr1B.!!$R1 6885
5 TraesCS1A01G425000 chr1B 688706741 688710132 3391 True 702.333333 852 81.844333 2930 5873 3 chr1B.!!$R2 2943
6 TraesCS1A01G425000 chr6A 574609446 574610791 1345 True 515.750000 1181 93.651500 1031 3362 4 chr6A.!!$R1 2331
7 TraesCS1A01G425000 chr6A 201107123 201108439 1316 False 385.400000 669 92.922800 1031 3359 5 chr6A.!!$F1 2328
8 TraesCS1A01G425000 chr5A 27123774 27126185 2411 True 452.750000 1092 93.225750 1031 3362 4 chr5A.!!$R2 2331
9 TraesCS1A01G425000 chr4A 550325858 550326876 1018 True 488.000000 1033 93.065000 1628 3362 3 chr4A.!!$R1 1734
10 TraesCS1A01G425000 chr2A 647178862 647180374 1512 False 223.000000 233 91.270000 1081 1795 2 chr2A.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 1573 0.105964 AAACACAGCGAGCCACTGTA 59.894 50.000 3.80 0.00 46.44 2.74 F
1497 2742 0.461339 GGTGGACGCGATTGGTATGT 60.461 55.000 15.93 0.00 0.00 2.29 F
2377 4175 0.036306 CTACACCCCCTCCAACACAC 59.964 60.000 0.00 0.00 0.00 3.82 F
2611 4413 0.173935 TTGGGTACACGACTATGCCG 59.826 55.000 0.00 0.00 0.00 5.69 F
3046 4964 6.628919 AAGTTGTTCTGTTTACCATGTACC 57.371 37.500 0.00 0.00 0.00 3.34 F
3160 5129 8.546597 TGTGATGCAATATACATATACACCAC 57.453 34.615 0.00 4.02 30.12 4.16 F
4371 6554 0.394192 CCAACTCTGGTCACTGCTCA 59.606 55.000 0.00 0.00 38.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 3461 0.103208 AGATTCTGCCTACGAAGCGG 59.897 55.000 0.00 0.0 38.00 5.52 R
2390 4188 0.182537 TTCTGTGTGTGTTGGAGGGG 59.817 55.000 0.00 0.0 0.00 4.79 R
3923 6072 1.073923 AGATGCCAAACTCGGGAAACT 59.926 47.619 0.00 0.0 0.00 2.66 R
3924 6073 1.534729 AGATGCCAAACTCGGGAAAC 58.465 50.000 0.00 0.0 0.00 2.78 R
3930 6079 1.656095 GAGACGAAGATGCCAAACTCG 59.344 52.381 0.00 0.0 0.00 4.18 R
5123 8181 3.274288 CATAAGGGACCTGCAAGAAGAC 58.726 50.000 0.00 0.0 34.07 3.01 R
6049 9445 0.959372 ATCAGCAGCAGCAACAGTCC 60.959 55.000 3.17 0.0 45.49 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 6.953101 TCTACATATAAACCAAGTGAAGCCA 58.047 36.000 0.00 0.00 0.00 4.75
73 74 4.705023 ACATATAAACCAAGTGAAGCCACC 59.295 41.667 0.00 0.00 44.22 4.61
74 75 2.738587 TAAACCAAGTGAAGCCACCA 57.261 45.000 0.00 0.00 44.22 4.17
75 76 1.111277 AAACCAAGTGAAGCCACCAC 58.889 50.000 0.00 0.00 44.22 4.16
76 77 0.258774 AACCAAGTGAAGCCACCACT 59.741 50.000 0.00 0.00 45.88 4.00
77 78 0.179018 ACCAAGTGAAGCCACCACTC 60.179 55.000 4.09 0.00 43.42 3.51
82 418 2.301346 AGTGAAGCCACCACTCTTTTG 58.699 47.619 0.00 0.00 44.22 2.44
85 421 1.609072 GAAGCCACCACTCTTTTGTCC 59.391 52.381 0.00 0.00 0.00 4.02
95 431 1.530655 CTTTTGTCCCAGGCCGGTT 60.531 57.895 1.90 0.00 0.00 4.44
117 463 3.353029 TCGCACCGCCATGTGTTG 61.353 61.111 0.00 0.00 38.52 3.33
135 481 3.047280 TGTGATCGCGGTTGCACC 61.047 61.111 6.13 0.00 42.97 5.01
139 485 3.950794 GATCGCGGTTGCACCTCCA 62.951 63.158 6.13 0.00 42.97 3.86
143 489 3.052082 CGGTTGCACCTCCAGCAG 61.052 66.667 0.00 0.00 43.75 4.24
144 490 2.431683 GGTTGCACCTCCAGCAGA 59.568 61.111 0.00 0.00 43.75 4.26
177 523 2.435069 TGGTCCAACGAAAACCTCACTA 59.565 45.455 0.00 0.00 34.05 2.74
206 552 1.183030 ACGACCACGGATGAAGGACA 61.183 55.000 0.00 0.00 44.46 4.02
209 555 1.207089 GACCACGGATGAAGGACATGA 59.793 52.381 0.00 0.00 39.56 3.07
213 559 3.321968 CCACGGATGAAGGACATGAGATA 59.678 47.826 0.00 0.00 39.56 1.98
220 566 4.998788 TGAAGGACATGAGATACGTGAAG 58.001 43.478 0.00 0.00 38.72 3.02
221 567 4.142160 TGAAGGACATGAGATACGTGAAGG 60.142 45.833 0.00 0.00 38.72 3.46
268 615 3.294493 GCGTGCAGGAAAGGCCAA 61.294 61.111 11.29 0.00 40.02 4.52
269 616 2.855514 GCGTGCAGGAAAGGCCAAA 61.856 57.895 11.29 0.00 40.02 3.28
270 617 1.966762 CGTGCAGGAAAGGCCAAAT 59.033 52.632 5.01 0.00 40.02 2.32
271 618 1.173043 CGTGCAGGAAAGGCCAAATA 58.827 50.000 5.01 0.00 40.02 1.40
272 619 1.135402 CGTGCAGGAAAGGCCAAATAC 60.135 52.381 5.01 0.00 40.02 1.89
273 620 1.892474 GTGCAGGAAAGGCCAAATACA 59.108 47.619 5.01 0.00 40.02 2.29
274 621 1.892474 TGCAGGAAAGGCCAAATACAC 59.108 47.619 5.01 0.00 40.02 2.90
275 622 1.892474 GCAGGAAAGGCCAAATACACA 59.108 47.619 5.01 0.00 40.02 3.72
276 623 2.094545 GCAGGAAAGGCCAAATACACAG 60.095 50.000 5.01 0.00 40.02 3.66
277 624 3.157087 CAGGAAAGGCCAAATACACAGT 58.843 45.455 5.01 0.00 40.02 3.55
278 625 3.191371 CAGGAAAGGCCAAATACACAGTC 59.809 47.826 5.01 0.00 40.02 3.51
279 626 2.492088 GGAAAGGCCAAATACACAGTCC 59.508 50.000 5.01 0.00 36.34 3.85
280 627 2.969821 AAGGCCAAATACACAGTCCA 57.030 45.000 5.01 0.00 0.00 4.02
281 628 2.200373 AGGCCAAATACACAGTCCAC 57.800 50.000 5.01 0.00 0.00 4.02
282 629 1.423541 AGGCCAAATACACAGTCCACA 59.576 47.619 5.01 0.00 0.00 4.17
283 630 2.041620 AGGCCAAATACACAGTCCACAT 59.958 45.455 5.01 0.00 0.00 3.21
284 631 2.423538 GGCCAAATACACAGTCCACATC 59.576 50.000 0.00 0.00 0.00 3.06
285 632 2.423538 GCCAAATACACAGTCCACATCC 59.576 50.000 0.00 0.00 0.00 3.51
286 633 2.677836 CCAAATACACAGTCCACATCCG 59.322 50.000 0.00 0.00 0.00 4.18
287 634 3.334691 CAAATACACAGTCCACATCCGT 58.665 45.455 0.00 0.00 0.00 4.69
288 635 2.961526 ATACACAGTCCACATCCGTC 57.038 50.000 0.00 0.00 0.00 4.79
289 636 0.892755 TACACAGTCCACATCCGTCC 59.107 55.000 0.00 0.00 0.00 4.79
290 637 1.118965 ACACAGTCCACATCCGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
291 638 0.250234 CACAGTCCACATCCGTCCAT 59.750 55.000 0.00 0.00 0.00 3.41
292 639 0.537188 ACAGTCCACATCCGTCCATC 59.463 55.000 0.00 0.00 0.00 3.51
293 640 0.528466 CAGTCCACATCCGTCCATCG 60.528 60.000 0.00 0.00 39.52 3.84
302 649 3.917760 CGTCCATCGGAGGGAGCC 61.918 72.222 12.35 0.18 34.37 4.70
303 650 2.444895 GTCCATCGGAGGGAGCCT 60.445 66.667 12.35 0.00 34.44 4.58
304 651 2.444706 TCCATCGGAGGGAGCCTG 60.445 66.667 7.41 0.00 31.76 4.85
305 652 2.765807 CCATCGGAGGGAGCCTGT 60.766 66.667 1.63 0.00 31.76 4.00
306 653 2.801631 CCATCGGAGGGAGCCTGTC 61.802 68.421 1.63 0.00 31.76 3.51
307 654 2.444895 ATCGGAGGGAGCCTGTCC 60.445 66.667 0.00 0.00 46.10 4.02
323 1015 0.109919 GTCCACATTTTTCCCGACGC 60.110 55.000 0.00 0.00 0.00 5.19
343 1035 3.434637 GCAGTACAAACACACAAACCAG 58.565 45.455 0.00 0.00 0.00 4.00
344 1036 3.127895 GCAGTACAAACACACAAACCAGA 59.872 43.478 0.00 0.00 0.00 3.86
345 1037 4.658071 CAGTACAAACACACAAACCAGAC 58.342 43.478 0.00 0.00 0.00 3.51
346 1038 3.692593 AGTACAAACACACAAACCAGACC 59.307 43.478 0.00 0.00 0.00 3.85
347 1039 2.520069 ACAAACACACAAACCAGACCA 58.480 42.857 0.00 0.00 0.00 4.02
348 1040 2.894126 ACAAACACACAAACCAGACCAA 59.106 40.909 0.00 0.00 0.00 3.67
349 1041 3.249917 CAAACACACAAACCAGACCAAC 58.750 45.455 0.00 0.00 0.00 3.77
350 1042 1.470051 ACACACAAACCAGACCAACC 58.530 50.000 0.00 0.00 0.00 3.77
351 1043 1.272203 ACACACAAACCAGACCAACCA 60.272 47.619 0.00 0.00 0.00 3.67
352 1044 2.031120 CACACAAACCAGACCAACCAT 58.969 47.619 0.00 0.00 0.00 3.55
353 1045 2.430332 CACACAAACCAGACCAACCATT 59.570 45.455 0.00 0.00 0.00 3.16
354 1046 2.693074 ACACAAACCAGACCAACCATTC 59.307 45.455 0.00 0.00 0.00 2.67
355 1047 2.958355 CACAAACCAGACCAACCATTCT 59.042 45.455 0.00 0.00 0.00 2.40
356 1048 3.384467 CACAAACCAGACCAACCATTCTT 59.616 43.478 0.00 0.00 0.00 2.52
357 1049 3.636764 ACAAACCAGACCAACCATTCTTC 59.363 43.478 0.00 0.00 0.00 2.87
358 1050 2.185004 ACCAGACCAACCATTCTTCG 57.815 50.000 0.00 0.00 0.00 3.79
359 1051 0.804989 CCAGACCAACCATTCTTCGC 59.195 55.000 0.00 0.00 0.00 4.70
360 1052 0.804989 CAGACCAACCATTCTTCGCC 59.195 55.000 0.00 0.00 0.00 5.54
361 1053 0.400213 AGACCAACCATTCTTCGCCA 59.600 50.000 0.00 0.00 0.00 5.69
362 1054 1.004745 AGACCAACCATTCTTCGCCAT 59.995 47.619 0.00 0.00 0.00 4.40
363 1055 1.401905 GACCAACCATTCTTCGCCATC 59.598 52.381 0.00 0.00 0.00 3.51
364 1056 1.271871 ACCAACCATTCTTCGCCATCA 60.272 47.619 0.00 0.00 0.00 3.07
371 1063 0.396435 TTCTTCGCCATCACCACTGT 59.604 50.000 0.00 0.00 0.00 3.55
393 1085 5.241949 TGTTTTCAGTACACGGCCATTATTT 59.758 36.000 2.24 0.00 0.00 1.40
434 1200 1.474330 GAAATGACCAGCCCGGAAAT 58.526 50.000 0.73 0.00 38.63 2.17
438 1204 2.818751 TGACCAGCCCGGAAATAAAT 57.181 45.000 0.73 0.00 38.63 1.40
439 1205 3.094484 TGACCAGCCCGGAAATAAATT 57.906 42.857 0.73 0.00 38.63 1.82
440 1206 3.020984 TGACCAGCCCGGAAATAAATTC 58.979 45.455 0.73 0.00 38.63 2.17
441 1207 2.021457 ACCAGCCCGGAAATAAATTCG 58.979 47.619 0.73 0.00 39.05 3.34
442 1208 2.294074 CCAGCCCGGAAATAAATTCGA 58.706 47.619 0.73 0.00 39.05 3.71
443 1209 2.685897 CCAGCCCGGAAATAAATTCGAA 59.314 45.455 0.73 0.00 39.05 3.71
445 1211 4.102649 CAGCCCGGAAATAAATTCGAAAC 58.897 43.478 0.73 0.00 39.05 2.78
446 1212 3.129813 AGCCCGGAAATAAATTCGAAACC 59.870 43.478 0.73 0.00 39.05 3.27
447 1213 3.119424 GCCCGGAAATAAATTCGAAACCA 60.119 43.478 0.73 0.00 39.05 3.67
448 1214 4.618693 GCCCGGAAATAAATTCGAAACCAA 60.619 41.667 0.73 0.00 39.05 3.67
451 1217 6.592220 CCCGGAAATAAATTCGAAACCAAAAT 59.408 34.615 0.73 0.00 39.05 1.82
453 1219 9.141400 CCGGAAATAAATTCGAAACCAAAATTA 57.859 29.630 0.00 0.00 39.05 1.40
601 1408 0.469917 CCCGCTCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
614 1421 1.836802 CTCTCTCTCTTTTCCCCCTGG 59.163 57.143 0.00 0.00 0.00 4.45
626 1433 1.293763 TCCCCCTGGTGATGATCTGTA 59.706 52.381 0.00 0.00 0.00 2.74
644 1451 5.458015 TCTGTATCGCCAATACACTATTCG 58.542 41.667 3.14 0.00 44.21 3.34
651 1458 2.726760 CCAATACACTATTCGCTCTCGC 59.273 50.000 0.00 0.00 35.26 5.03
726 1533 2.029666 CATGGACGGCGAGGATCC 59.970 66.667 16.62 11.06 0.00 3.36
727 1534 2.443952 ATGGACGGCGAGGATCCA 60.444 61.111 16.62 17.28 46.36 3.41
751 1558 1.147376 CCGTCACCTCCCACAAACA 59.853 57.895 0.00 0.00 0.00 2.83
763 1570 1.153168 ACAAACACAGCGAGCCACT 60.153 52.632 0.00 0.00 0.00 4.00
764 1571 1.280746 CAAACACAGCGAGCCACTG 59.719 57.895 0.00 0.00 41.08 3.66
766 1573 0.105964 AAACACAGCGAGCCACTGTA 59.894 50.000 3.80 0.00 46.44 2.74
770 1577 1.806542 CACAGCGAGCCACTGTAAAAT 59.193 47.619 3.80 0.00 46.44 1.82
799 1606 2.368685 CACACGCAAGGTTAAACGTTC 58.631 47.619 0.00 0.00 46.39 3.95
810 1617 1.434555 TAAACGTTCCCTGCATGACG 58.565 50.000 0.00 0.00 41.00 4.35
828 1635 2.288025 GCGTGGGTCCCCTCTACAA 61.288 63.158 5.13 0.00 36.94 2.41
839 1646 1.486211 CCTCTACAAGTCGGTCCCAT 58.514 55.000 0.00 0.00 0.00 4.00
840 1647 1.409427 CCTCTACAAGTCGGTCCCATC 59.591 57.143 0.00 0.00 0.00 3.51
869 1676 0.901124 AGATGAGCTGGTGGTGAGTC 59.099 55.000 0.00 0.00 0.00 3.36
871 1678 0.900182 ATGAGCTGGTGGTGAGTCGA 60.900 55.000 0.00 0.00 0.00 4.20
886 1693 1.728074 TCGAGTGCACGTAACAGCG 60.728 57.895 12.01 7.98 37.94 5.18
921 1728 4.814294 ACGAGACGCCGGGAATGC 62.814 66.667 2.18 0.00 0.00 3.56
1434 2670 4.398044 CCTGTAATTAGATTGGCGTTTGGT 59.602 41.667 0.00 0.00 0.00 3.67
1497 2742 0.461339 GGTGGACGCGATTGGTATGT 60.461 55.000 15.93 0.00 0.00 2.29
1687 3445 7.339721 TCGTCTATGATCTATACCATTTCCCTC 59.660 40.741 0.00 0.00 0.00 4.30
1702 3460 1.293179 CCTCTGCACACATGACCGA 59.707 57.895 0.00 0.00 0.00 4.69
1703 3461 1.016130 CCTCTGCACACATGACCGAC 61.016 60.000 0.00 0.00 0.00 4.79
1704 3462 1.005037 TCTGCACACATGACCGACC 60.005 57.895 0.00 0.00 0.00 4.79
1705 3463 2.356913 TGCACACATGACCGACCG 60.357 61.111 0.00 0.00 0.00 4.79
1706 3464 3.788766 GCACACATGACCGACCGC 61.789 66.667 0.00 0.00 0.00 5.68
1708 3466 1.667830 CACACATGACCGACCGCTT 60.668 57.895 0.00 0.00 0.00 4.68
1709 3467 1.374252 ACACATGACCGACCGCTTC 60.374 57.895 0.00 0.00 0.00 3.86
1903 3681 7.804614 TTGTATGTTGTTGTTTTTCACTGTC 57.195 32.000 0.00 0.00 0.00 3.51
1918 3697 9.691362 TTTTTCACTGTCTTTAAAATGCTATCC 57.309 29.630 0.00 0.00 0.00 2.59
1979 3758 4.709886 ACTTTGGGGCTGGACATTTTATAC 59.290 41.667 0.00 0.00 0.00 1.47
1999 3778 9.555727 TTTATACCCAAGATTAGTGTATCAAGC 57.444 33.333 0.00 0.00 0.00 4.01
2091 3872 8.250332 TCTTTATTTGAGGTGTCAATTATTGGC 58.750 33.333 2.16 2.16 42.41 4.52
2092 3873 7.716799 TTATTTGAGGTGTCAATTATTGGCT 57.283 32.000 10.97 0.00 42.41 4.75
2248 4036 1.144913 TCTTGTCTTCCTTGGTTGGGG 59.855 52.381 0.00 0.00 0.00 4.96
2372 4170 1.631898 GCTAAACTACACCCCCTCCAA 59.368 52.381 0.00 0.00 0.00 3.53
2373 4171 2.617276 GCTAAACTACACCCCCTCCAAC 60.617 54.545 0.00 0.00 0.00 3.77
2374 4172 1.525175 AAACTACACCCCCTCCAACA 58.475 50.000 0.00 0.00 0.00 3.33
2375 4173 0.769247 AACTACACCCCCTCCAACAC 59.231 55.000 0.00 0.00 0.00 3.32
2376 4174 0.400815 ACTACACCCCCTCCAACACA 60.401 55.000 0.00 0.00 0.00 3.72
2377 4175 0.036306 CTACACCCCCTCCAACACAC 59.964 60.000 0.00 0.00 0.00 3.82
2378 4176 0.694783 TACACCCCCTCCAACACACA 60.695 55.000 0.00 0.00 0.00 3.72
2379 4177 1.528309 CACCCCCTCCAACACACAC 60.528 63.158 0.00 0.00 0.00 3.82
2380 4178 2.004120 ACCCCCTCCAACACACACA 61.004 57.895 0.00 0.00 0.00 3.72
2381 4179 1.228245 CCCCCTCCAACACACACAG 60.228 63.158 0.00 0.00 0.00 3.66
2382 4180 1.705002 CCCCCTCCAACACACACAGA 61.705 60.000 0.00 0.00 0.00 3.41
2383 4181 0.182537 CCCCTCCAACACACACAGAA 59.817 55.000 0.00 0.00 0.00 3.02
2384 4182 1.597742 CCCTCCAACACACACAGAAG 58.402 55.000 0.00 0.00 0.00 2.85
2385 4183 1.134098 CCCTCCAACACACACAGAAGT 60.134 52.381 0.00 0.00 0.00 3.01
2386 4184 2.104111 CCCTCCAACACACACAGAAGTA 59.896 50.000 0.00 0.00 0.00 2.24
2387 4185 3.131396 CCTCCAACACACACAGAAGTAC 58.869 50.000 0.00 0.00 0.00 2.73
2388 4186 3.431626 CCTCCAACACACACAGAAGTACA 60.432 47.826 0.00 0.00 0.00 2.90
2389 4187 3.527533 TCCAACACACACAGAAGTACAC 58.472 45.455 0.00 0.00 0.00 2.90
2390 4188 2.612212 CCAACACACACAGAAGTACACC 59.388 50.000 0.00 0.00 0.00 4.16
2391 4189 2.612212 CAACACACACAGAAGTACACCC 59.388 50.000 0.00 0.00 0.00 4.61
2392 4190 1.140252 ACACACACAGAAGTACACCCC 59.860 52.381 0.00 0.00 0.00 4.95
2393 4191 0.763035 ACACACAGAAGTACACCCCC 59.237 55.000 0.00 0.00 0.00 5.40
2394 4192 1.056660 CACACAGAAGTACACCCCCT 58.943 55.000 0.00 0.00 0.00 4.79
2395 4193 1.002087 CACACAGAAGTACACCCCCTC 59.998 57.143 0.00 0.00 0.00 4.30
2396 4194 0.613777 CACAGAAGTACACCCCCTCC 59.386 60.000 0.00 0.00 0.00 4.30
2397 4195 0.192566 ACAGAAGTACACCCCCTCCA 59.807 55.000 0.00 0.00 0.00 3.86
2398 4196 1.358152 CAGAAGTACACCCCCTCCAA 58.642 55.000 0.00 0.00 0.00 3.53
2399 4197 1.003233 CAGAAGTACACCCCCTCCAAC 59.997 57.143 0.00 0.00 0.00 3.77
2415 4215 4.503123 CCTCCAACACACACAGAAGTATCA 60.503 45.833 0.00 0.00 0.00 2.15
2495 4295 2.741517 TGATGTGTTAATCAGTGGTGCG 59.258 45.455 0.00 0.00 32.75 5.34
2609 4411 2.373540 TGTTGGGTACACGACTATGC 57.626 50.000 16.53 0.00 0.00 3.14
2611 4413 0.173935 TTGGGTACACGACTATGCCG 59.826 55.000 0.00 0.00 0.00 5.69
2770 4688 8.511321 CACATGAAAGGTTACAAGCTATTTACA 58.489 33.333 0.00 0.00 35.34 2.41
2858 4776 8.658840 TGATATGGTAGGTGTGTATGCTTATA 57.341 34.615 0.00 0.00 0.00 0.98
2969 4887 9.715121 ATCATCATTTTTGCTTTTATCTTGTGT 57.285 25.926 0.00 0.00 0.00 3.72
3046 4964 6.628919 AAGTTGTTCTGTTTACCATGTACC 57.371 37.500 0.00 0.00 0.00 3.34
3160 5129 8.546597 TGTGATGCAATATACATATACACCAC 57.453 34.615 0.00 4.02 30.12 4.16
3420 5401 9.971744 CTAAAAGTGAAAAGGAAATGTTTTGTG 57.028 29.630 0.00 0.00 0.00 3.33
3961 6110 5.164954 GCATCTTCGTCTCTTTAGAAGTGT 58.835 41.667 4.65 0.00 41.36 3.55
3987 6147 5.597806 ACATACCTCATGTTATACCACACG 58.402 41.667 0.00 0.00 46.01 4.49
4203 6368 5.582269 TCATTGAATCTGAATCGAACCACTC 59.418 40.000 0.00 0.00 0.00 3.51
4217 6390 6.228258 TCGAACCACTCTAGTTGCTTAAAAT 58.772 36.000 0.00 0.00 0.00 1.82
4241 6416 9.630098 AATTAATAATTATTGCGATGCAGGAAG 57.370 29.630 18.98 0.00 40.61 3.46
4251 6426 3.535561 CGATGCAGGAAGTGGAAGTATT 58.464 45.455 0.00 0.00 0.00 1.89
4264 6439 7.559590 AGTGGAAGTATTATTTCTGCATGAC 57.440 36.000 0.00 0.00 0.00 3.06
4275 6450 2.870372 GCATGACTTGCGTGTCCC 59.130 61.111 0.00 0.00 42.54 4.46
4322 6503 3.713288 TCGTTTCTTGACCTATATGGCG 58.287 45.455 0.00 0.00 40.22 5.69
4371 6554 0.394192 CCAACTCTGGTCACTGCTCA 59.606 55.000 0.00 0.00 38.00 4.26
4412 6595 3.555586 GGTTGCTGCTCACCAAATTGAAT 60.556 43.478 14.43 0.00 0.00 2.57
4556 6749 6.791887 TCAGACTGATTTTGCTCAACTAAG 57.208 37.500 0.00 0.00 0.00 2.18
4646 7572 8.034313 AGATATAAATTGCTGGAAGTCCTGTA 57.966 34.615 6.16 0.00 37.30 2.74
4655 7581 4.567159 GCTGGAAGTCCTGTAGATTTAACG 59.433 45.833 6.16 0.00 37.30 3.18
4664 7590 4.693566 CCTGTAGATTTAACGCTTGGTCAA 59.306 41.667 0.00 0.00 0.00 3.18
4722 7648 2.048603 AATCTTGCGCCTTGGAGCC 61.049 57.895 12.54 0.00 0.00 4.70
4755 7681 2.038952 TGGTATCATAGCCATGTCTGCC 59.961 50.000 0.00 0.00 33.57 4.85
4802 7728 4.961099 GGGTAGGATTACTGTTCAGGTACT 59.039 45.833 4.82 0.00 43.88 2.73
4846 7772 6.759827 TCTGTCATCATGATACTGTGAACATG 59.240 38.462 8.15 13.41 40.65 3.21
4861 7787 9.453572 ACTGTGAACATGAATAGTTGAATACAT 57.546 29.630 0.00 0.00 0.00 2.29
5123 8181 4.228912 ACCTCTCAATGCTTTGTTTTCG 57.771 40.909 11.67 1.33 34.32 3.46
5494 8816 6.830324 TGAAGGTAATGCTTCTAATGAGCAAT 59.170 34.615 2.67 0.00 42.12 3.56
5495 8817 6.630444 AGGTAATGCTTCTAATGAGCAATG 57.370 37.500 2.67 0.00 42.12 2.82
5498 8820 4.569761 ATGCTTCTAATGAGCAATGCAG 57.430 40.909 8.35 0.00 42.12 4.41
5500 8822 4.204799 TGCTTCTAATGAGCAATGCAGAT 58.795 39.130 8.35 0.00 35.46 2.90
5526 8876 6.322712 GTCTATAAGCTTCCCGGATATCTCAT 59.677 42.308 0.73 0.00 0.00 2.90
5613 8966 1.710013 CGTTTGTCACGTATGAGGCT 58.290 50.000 0.00 0.00 44.49 4.58
5748 9116 2.959707 AGGGCGAGTAGAAGGACAATAG 59.040 50.000 0.00 0.00 0.00 1.73
5916 9306 4.828072 AGTCTTATTCAGTGAGGAACCC 57.172 45.455 0.00 0.00 0.00 4.11
5981 9371 8.347771 TGCTGCTAATAGTTGATTTTCATGATC 58.652 33.333 0.00 0.00 0.00 2.92
6021 9412 7.280428 CACTCTTTGTTGCATCTCATCTATCTT 59.720 37.037 0.00 0.00 0.00 2.40
6023 9414 8.571461 TCTTTGTTGCATCTCATCTATCTTTT 57.429 30.769 0.00 0.00 0.00 2.27
6049 9445 6.449698 AGTTACTTGGCATTTCTCATTTGTG 58.550 36.000 0.00 0.00 0.00 3.33
6052 9448 3.940209 TGGCATTTCTCATTTGTGGAC 57.060 42.857 0.00 0.00 0.00 4.02
6069 9469 1.676916 GGACTGTTGCTGCTGCTGATA 60.677 52.381 17.00 3.37 40.48 2.15
6081 9481 6.537660 TGCTGCTGCTGATATATTGATATGTC 59.462 38.462 17.00 1.98 40.48 3.06
6099 9499 9.784531 TGATATGTCTCTGAAGAAAAACTCTTT 57.215 29.630 0.00 0.00 44.82 2.52
6103 9503 8.786826 TGTCTCTGAAGAAAAACTCTTTACAA 57.213 30.769 0.00 0.00 44.82 2.41
6106 9506 8.883731 TCTCTGAAGAAAAACTCTTTACAACAG 58.116 33.333 0.00 0.00 44.82 3.16
6109 9509 8.106247 TGAAGAAAAACTCTTTACAACAGTGT 57.894 30.769 0.00 0.00 44.82 3.55
6110 9510 8.020819 TGAAGAAAAACTCTTTACAACAGTGTG 58.979 33.333 0.00 0.00 44.82 3.82
6184 9584 6.463995 TTTTGCATTTCCTAGTCTGTTTGT 57.536 33.333 0.00 0.00 0.00 2.83
6186 9586 6.463995 TTGCATTTCCTAGTCTGTTTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
6187 9587 5.830912 TGCATTTCCTAGTCTGTTTGTTTG 58.169 37.500 0.00 0.00 0.00 2.93
6188 9588 5.359576 TGCATTTCCTAGTCTGTTTGTTTGT 59.640 36.000 0.00 0.00 0.00 2.83
6191 9591 5.828299 TTCCTAGTCTGTTTGTTTGTTGG 57.172 39.130 0.00 0.00 0.00 3.77
6192 9592 4.204012 TCCTAGTCTGTTTGTTTGTTGGG 58.796 43.478 0.00 0.00 0.00 4.12
6194 9594 3.866883 AGTCTGTTTGTTTGTTGGGTG 57.133 42.857 0.00 0.00 0.00 4.61
6195 9595 3.426615 AGTCTGTTTGTTTGTTGGGTGA 58.573 40.909 0.00 0.00 0.00 4.02
6196 9596 3.192633 AGTCTGTTTGTTTGTTGGGTGAC 59.807 43.478 0.00 0.00 0.00 3.67
6197 9597 3.057174 GTCTGTTTGTTTGTTGGGTGACA 60.057 43.478 0.00 0.00 0.00 3.58
6198 9598 3.766591 TCTGTTTGTTTGTTGGGTGACAT 59.233 39.130 0.00 0.00 0.00 3.06
6246 9646 7.344612 ACATCCACTGAGTAGTTTCCATATGTA 59.655 37.037 1.24 0.00 34.07 2.29
6248 9648 7.726216 TCCACTGAGTAGTTTCCATATGTATG 58.274 38.462 1.24 0.00 34.07 2.39
6249 9649 7.563556 TCCACTGAGTAGTTTCCATATGTATGA 59.436 37.037 1.24 0.00 34.07 2.15
6252 9652 8.417106 ACTGAGTAGTTTCCATATGTATGACTG 58.583 37.037 1.24 0.00 32.46 3.51
6253 9653 8.533569 TGAGTAGTTTCCATATGTATGACTGA 57.466 34.615 1.24 0.00 35.75 3.41
6260 9862 8.554528 GTTTCCATATGTATGACTGACAGAATG 58.445 37.037 10.08 0.37 37.83 2.67
6267 9869 2.429478 TGACTGACAGAATGCCACATG 58.571 47.619 10.08 0.00 42.53 3.21
6271 9873 2.418976 CTGACAGAATGCCACATGACTG 59.581 50.000 0.00 11.06 42.53 3.51
6281 9883 7.762615 AGAATGCCACATGACTGAATTTATTTG 59.237 33.333 0.00 0.00 0.00 2.32
6316 9918 5.557893 GCTCTTCTTATTGCTAAGATGCGTG 60.558 44.000 0.00 0.00 42.22 5.34
6333 9935 1.465387 CGTGTTCGCTCTCTACTGAGT 59.535 52.381 0.00 0.00 40.98 3.41
6335 9937 3.483901 CGTGTTCGCTCTCTACTGAGTAC 60.484 52.174 0.00 0.00 40.98 2.73
6336 9938 3.436015 GTGTTCGCTCTCTACTGAGTACA 59.564 47.826 0.00 0.00 40.98 2.90
6337 9939 4.095185 GTGTTCGCTCTCTACTGAGTACAT 59.905 45.833 0.00 0.00 40.98 2.29
6338 9940 4.333095 TGTTCGCTCTCTACTGAGTACATC 59.667 45.833 0.00 0.00 40.98 3.06
6339 9941 4.138487 TCGCTCTCTACTGAGTACATCA 57.862 45.455 0.00 0.00 40.98 3.07
6364 9971 4.229096 AGTACAATCTTGCATTTGCGTTG 58.771 39.130 0.00 3.76 45.83 4.10
6408 10029 3.012722 GACCCCCGGGATTGTGGA 61.013 66.667 26.32 0.00 38.96 4.02
6447 10068 0.106149 GCCCGTCGGACATTATCCTT 59.894 55.000 14.39 0.00 46.69 3.36
6468 10089 2.753043 GTCCGTCGTAGGGCTCCA 60.753 66.667 0.00 0.00 32.02 3.86
6479 10100 4.704833 GGCTCCAACCTGCTGCGA 62.705 66.667 0.00 0.00 0.00 5.10
6510 10131 3.550431 CGGACCAGCCCCATCGAT 61.550 66.667 0.00 0.00 0.00 3.59
6541 10162 1.810606 CGGCGACCCTGCATAGAGAT 61.811 60.000 0.00 0.00 36.28 2.75
6556 10177 1.996786 GAGATGCACCCACGCCATTG 61.997 60.000 0.00 0.00 0.00 2.82
6564 10185 0.664761 CCCACGCCATTGTCATCATC 59.335 55.000 0.00 0.00 0.00 2.92
6870 10503 3.801997 CGCCTTGCCCCTCTCCAT 61.802 66.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.584391 AACTCCTGTCCACGAGCCC 61.584 63.158 0.00 0.00 0.00 5.19
21 22 0.586802 GTTTCGCAACTCCTGTCCAC 59.413 55.000 0.00 0.00 0.00 4.02
22 23 0.179234 TGTTTCGCAACTCCTGTCCA 59.821 50.000 0.00 0.00 33.58 4.02
23 24 0.868406 CTGTTTCGCAACTCCTGTCC 59.132 55.000 0.00 0.00 33.58 4.02
71 72 0.178990 GCCTGGGACAAAAGAGTGGT 60.179 55.000 0.00 0.00 38.70 4.16
73 74 1.237285 CGGCCTGGGACAAAAGAGTG 61.237 60.000 0.00 0.00 38.70 3.51
74 75 1.073199 CGGCCTGGGACAAAAGAGT 59.927 57.895 0.00 0.00 38.70 3.24
75 76 1.675641 CCGGCCTGGGACAAAAGAG 60.676 63.158 0.00 0.00 38.70 2.85
76 77 2.002018 AACCGGCCTGGGACAAAAGA 62.002 55.000 16.44 0.00 44.64 2.52
77 78 1.524008 GAACCGGCCTGGGACAAAAG 61.524 60.000 16.44 0.00 44.64 2.27
103 439 1.008652 CACACAACACATGGCGGTG 60.009 57.895 7.47 7.47 44.35 4.94
105 441 0.168788 GATCACACAACACATGGCGG 59.831 55.000 0.00 0.00 0.00 6.13
107 443 0.454957 GCGATCACACAACACATGGC 60.455 55.000 0.00 0.00 0.00 4.40
108 444 0.179217 CGCGATCACACAACACATGG 60.179 55.000 0.00 0.00 0.00 3.66
109 445 0.179217 CCGCGATCACACAACACATG 60.179 55.000 8.23 0.00 0.00 3.21
110 446 0.602638 ACCGCGATCACACAACACAT 60.603 50.000 8.23 0.00 0.00 3.21
111 447 0.812014 AACCGCGATCACACAACACA 60.812 50.000 8.23 0.00 0.00 3.72
112 448 0.384230 CAACCGCGATCACACAACAC 60.384 55.000 8.23 0.00 0.00 3.32
113 449 1.938125 CAACCGCGATCACACAACA 59.062 52.632 8.23 0.00 0.00 3.33
114 450 1.440353 GCAACCGCGATCACACAAC 60.440 57.895 8.23 0.00 0.00 3.32
117 463 2.173382 GTGCAACCGCGATCACAC 59.827 61.111 8.23 7.14 42.97 3.82
165 511 1.666189 GCTGGCGATAGTGAGGTTTTC 59.334 52.381 0.00 0.00 39.35 2.29
177 523 4.760047 GTGGTCGTGGCTGGCGAT 62.760 66.667 0.00 0.00 40.59 4.58
197 543 5.452496 CCTTCACGTATCTCATGTCCTTCAT 60.452 44.000 0.00 0.00 37.22 2.57
206 552 3.430929 GCAACCTCCTTCACGTATCTCAT 60.431 47.826 0.00 0.00 0.00 2.90
209 555 1.899814 TGCAACCTCCTTCACGTATCT 59.100 47.619 0.00 0.00 0.00 1.98
213 559 1.594293 CGTGCAACCTCCTTCACGT 60.594 57.895 5.58 0.00 44.84 4.49
267 614 3.596214 GACGGATGTGGACTGTGTATTT 58.404 45.455 0.00 0.00 0.00 1.40
268 615 2.093658 GGACGGATGTGGACTGTGTATT 60.094 50.000 0.00 0.00 0.00 1.89
269 616 1.480954 GGACGGATGTGGACTGTGTAT 59.519 52.381 0.00 0.00 0.00 2.29
270 617 0.892755 GGACGGATGTGGACTGTGTA 59.107 55.000 0.00 0.00 0.00 2.90
271 618 1.118965 TGGACGGATGTGGACTGTGT 61.119 55.000 0.00 0.00 0.00 3.72
272 619 0.250234 ATGGACGGATGTGGACTGTG 59.750 55.000 0.00 0.00 0.00 3.66
273 620 0.537188 GATGGACGGATGTGGACTGT 59.463 55.000 0.00 0.00 0.00 3.55
274 621 0.528466 CGATGGACGGATGTGGACTG 60.528 60.000 0.00 0.00 38.46 3.51
275 622 1.816537 CGATGGACGGATGTGGACT 59.183 57.895 0.00 0.00 38.46 3.85
276 623 4.420143 CGATGGACGGATGTGGAC 57.580 61.111 0.00 0.00 38.46 4.02
285 632 3.917760 GGCTCCCTCCGATGGACG 61.918 72.222 0.00 0.00 42.18 4.79
286 633 2.444895 AGGCTCCCTCCGATGGAC 60.445 66.667 0.00 0.00 0.00 4.02
287 634 2.444706 CAGGCTCCCTCCGATGGA 60.445 66.667 0.00 0.00 0.00 3.41
288 635 2.765807 ACAGGCTCCCTCCGATGG 60.766 66.667 0.00 0.00 0.00 3.51
289 636 2.801631 GGACAGGCTCCCTCCGATG 61.802 68.421 0.00 0.00 31.83 3.84
290 637 2.444895 GGACAGGCTCCCTCCGAT 60.445 66.667 0.00 0.00 31.83 4.18
291 638 3.992641 TGGACAGGCTCCCTCCGA 61.993 66.667 4.34 0.00 38.49 4.55
292 639 3.775654 GTGGACAGGCTCCCTCCG 61.776 72.222 4.34 0.00 38.49 4.63
293 640 1.566298 AATGTGGACAGGCTCCCTCC 61.566 60.000 4.34 0.53 38.49 4.30
294 641 0.329596 AAATGTGGACAGGCTCCCTC 59.670 55.000 4.34 1.71 38.49 4.30
295 642 0.779997 AAAATGTGGACAGGCTCCCT 59.220 50.000 4.34 0.00 38.49 4.20
296 643 1.546029 GAAAAATGTGGACAGGCTCCC 59.454 52.381 0.00 0.00 38.49 4.30
297 644 1.546029 GGAAAAATGTGGACAGGCTCC 59.454 52.381 0.00 0.00 39.97 4.70
298 645 1.546029 GGGAAAAATGTGGACAGGCTC 59.454 52.381 0.00 0.00 0.00 4.70
299 646 1.632589 GGGAAAAATGTGGACAGGCT 58.367 50.000 0.00 0.00 0.00 4.58
300 647 0.243636 CGGGAAAAATGTGGACAGGC 59.756 55.000 0.00 0.00 0.00 4.85
301 648 1.539827 GTCGGGAAAAATGTGGACAGG 59.460 52.381 0.00 0.00 0.00 4.00
302 649 1.196808 CGTCGGGAAAAATGTGGACAG 59.803 52.381 0.00 0.00 0.00 3.51
303 650 1.231221 CGTCGGGAAAAATGTGGACA 58.769 50.000 0.00 0.00 0.00 4.02
304 651 0.109919 GCGTCGGGAAAAATGTGGAC 60.110 55.000 0.00 0.00 0.00 4.02
305 652 0.535328 TGCGTCGGGAAAAATGTGGA 60.535 50.000 0.00 0.00 0.00 4.02
306 653 0.109781 CTGCGTCGGGAAAAATGTGG 60.110 55.000 0.00 0.00 0.00 4.17
307 654 0.591170 ACTGCGTCGGGAAAAATGTG 59.409 50.000 0.00 0.00 0.00 3.21
308 655 1.802365 GTACTGCGTCGGGAAAAATGT 59.198 47.619 0.00 0.00 0.00 2.71
309 656 1.801771 TGTACTGCGTCGGGAAAAATG 59.198 47.619 0.00 0.00 0.00 2.32
310 657 2.172851 TGTACTGCGTCGGGAAAAAT 57.827 45.000 0.00 0.00 0.00 1.82
311 658 1.950828 TTGTACTGCGTCGGGAAAAA 58.049 45.000 0.00 0.00 0.00 1.94
312 659 1.598601 GTTTGTACTGCGTCGGGAAAA 59.401 47.619 0.00 0.00 0.00 2.29
313 660 1.219646 GTTTGTACTGCGTCGGGAAA 58.780 50.000 0.00 0.00 0.00 3.13
314 661 0.104487 TGTTTGTACTGCGTCGGGAA 59.896 50.000 0.00 0.00 0.00 3.97
315 662 0.598158 GTGTTTGTACTGCGTCGGGA 60.598 55.000 0.00 0.00 0.00 5.14
323 1015 4.438200 GGTCTGGTTTGTGTGTTTGTACTG 60.438 45.833 0.00 0.00 0.00 2.74
326 1018 3.687125 TGGTCTGGTTTGTGTGTTTGTA 58.313 40.909 0.00 0.00 0.00 2.41
328 1020 3.249917 GTTGGTCTGGTTTGTGTGTTTG 58.750 45.455 0.00 0.00 0.00 2.93
333 1025 2.452600 ATGGTTGGTCTGGTTTGTGT 57.547 45.000 0.00 0.00 0.00 3.72
335 1027 3.312736 AGAATGGTTGGTCTGGTTTGT 57.687 42.857 0.00 0.00 0.00 2.83
336 1028 3.304659 CGAAGAATGGTTGGTCTGGTTTG 60.305 47.826 0.00 0.00 0.00 2.93
337 1029 2.884639 CGAAGAATGGTTGGTCTGGTTT 59.115 45.455 0.00 0.00 0.00 3.27
338 1030 2.504367 CGAAGAATGGTTGGTCTGGTT 58.496 47.619 0.00 0.00 0.00 3.67
343 1035 1.401905 GATGGCGAAGAATGGTTGGTC 59.598 52.381 0.00 0.00 0.00 4.02
344 1036 1.271871 TGATGGCGAAGAATGGTTGGT 60.272 47.619 0.00 0.00 0.00 3.67
345 1037 1.133025 GTGATGGCGAAGAATGGTTGG 59.867 52.381 0.00 0.00 0.00 3.77
346 1038 1.133025 GGTGATGGCGAAGAATGGTTG 59.867 52.381 0.00 0.00 0.00 3.77
347 1039 1.271871 TGGTGATGGCGAAGAATGGTT 60.272 47.619 0.00 0.00 0.00 3.67
348 1040 0.327924 TGGTGATGGCGAAGAATGGT 59.672 50.000 0.00 0.00 0.00 3.55
349 1041 0.734889 GTGGTGATGGCGAAGAATGG 59.265 55.000 0.00 0.00 0.00 3.16
350 1042 1.399440 CAGTGGTGATGGCGAAGAATG 59.601 52.381 0.00 0.00 0.00 2.67
351 1043 1.003580 ACAGTGGTGATGGCGAAGAAT 59.996 47.619 0.00 0.00 0.00 2.40
352 1044 0.396435 ACAGTGGTGATGGCGAAGAA 59.604 50.000 0.00 0.00 0.00 2.52
353 1045 0.396435 AACAGTGGTGATGGCGAAGA 59.604 50.000 0.00 0.00 0.00 2.87
354 1046 1.238439 AAACAGTGGTGATGGCGAAG 58.762 50.000 0.00 0.00 0.00 3.79
355 1047 1.606668 GAAAACAGTGGTGATGGCGAA 59.393 47.619 0.00 0.00 0.00 4.70
356 1048 1.234821 GAAAACAGTGGTGATGGCGA 58.765 50.000 0.00 0.00 0.00 5.54
357 1049 0.950836 TGAAAACAGTGGTGATGGCG 59.049 50.000 0.00 0.00 0.00 5.69
358 1050 1.956477 ACTGAAAACAGTGGTGATGGC 59.044 47.619 0.00 0.00 33.58 4.40
359 1051 4.024048 GTGTACTGAAAACAGTGGTGATGG 60.024 45.833 12.26 0.00 36.68 3.51
360 1052 4.318760 CGTGTACTGAAAACAGTGGTGATG 60.319 45.833 12.26 0.00 36.68 3.07
361 1053 3.807622 CGTGTACTGAAAACAGTGGTGAT 59.192 43.478 12.26 0.00 36.68 3.06
362 1054 3.191669 CGTGTACTGAAAACAGTGGTGA 58.808 45.455 12.26 0.00 36.68 4.02
363 1055 2.286833 CCGTGTACTGAAAACAGTGGTG 59.713 50.000 12.26 1.44 36.68 4.17
364 1056 2.557317 CCGTGTACTGAAAACAGTGGT 58.443 47.619 12.26 0.00 36.68 4.16
371 1063 5.391097 CGAAATAATGGCCGTGTACTGAAAA 60.391 40.000 0.00 0.00 0.00 2.29
378 1070 2.553086 GGTCGAAATAATGGCCGTGTA 58.447 47.619 0.00 0.00 0.00 2.90
393 1085 1.172180 CCTTGCTTTGCTTGGGTCGA 61.172 55.000 0.00 0.00 0.00 4.20
488 1254 0.040425 GCGCACGTCCATCACTTTTT 60.040 50.000 0.30 0.00 0.00 1.94
489 1255 1.574428 GCGCACGTCCATCACTTTT 59.426 52.632 0.30 0.00 0.00 2.27
490 1256 2.667318 CGCGCACGTCCATCACTTT 61.667 57.895 8.75 0.00 33.53 2.66
491 1257 2.835701 ATCGCGCACGTCCATCACTT 62.836 55.000 8.75 0.00 41.18 3.16
492 1258 3.356639 ATCGCGCACGTCCATCACT 62.357 57.895 8.75 0.00 41.18 3.41
493 1259 2.885644 ATCGCGCACGTCCATCAC 60.886 61.111 8.75 0.00 41.18 3.06
494 1260 2.885164 CATCGCGCACGTCCATCA 60.885 61.111 8.75 0.00 41.18 3.07
547 1348 3.209812 CCGTCGCGATGGAGAGGA 61.210 66.667 38.46 0.00 39.90 3.71
601 1408 1.753903 TCATCACCAGGGGGAAAAGA 58.246 50.000 0.00 0.00 38.05 2.52
614 1421 5.230182 TGTATTGGCGATACAGATCATCAC 58.770 41.667 21.11 0.00 44.32 3.06
691 1498 2.543802 GCTTATCCCCCGAAAGCGC 61.544 63.158 0.00 0.00 36.59 5.92
736 1543 0.465460 GCTGTGTTTGTGGGAGGTGA 60.465 55.000 0.00 0.00 0.00 4.02
786 1593 2.351706 TGCAGGGAACGTTTAACCTT 57.648 45.000 14.95 0.90 0.00 3.50
817 1624 0.324091 GGACCGACTTGTAGAGGGGA 60.324 60.000 0.00 0.00 0.00 4.81
821 1628 1.409427 GGATGGGACCGACTTGTAGAG 59.591 57.143 0.00 0.00 0.00 2.43
839 1646 2.725312 GCTCATCTCCCACTGCGGA 61.725 63.158 0.00 0.00 36.56 5.54
840 1647 2.202987 GCTCATCTCCCACTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
869 1676 2.716828 CCGCTGTTACGTGCACTCG 61.717 63.158 16.19 5.07 0.00 4.18
871 1678 3.041940 GCCGCTGTTACGTGCACT 61.042 61.111 16.19 4.64 32.03 4.40
921 1728 1.619332 GGCTCCCTCCCTCTATTAACG 59.381 57.143 0.00 0.00 0.00 3.18
1378 2610 2.586357 GCGCCGAATCTGGGAGTC 60.586 66.667 0.00 0.00 0.00 3.36
1411 2643 4.398044 ACCAAACGCCAATCTAATTACAGG 59.602 41.667 0.00 0.00 0.00 4.00
1434 2670 1.443702 CACGCGATTCCGACACAGA 60.444 57.895 15.93 0.00 38.22 3.41
1531 2776 2.202756 CTCGCGCCCACCTAACTC 60.203 66.667 0.00 0.00 0.00 3.01
1658 3416 9.141400 GGAAATGGTATAGATCATAGACGAAAC 57.859 37.037 0.00 0.00 0.00 2.78
1687 3445 2.382746 CGGTCGGTCATGTGTGCAG 61.383 63.158 0.00 0.00 0.00 4.41
1702 3460 0.179108 GATTCTGCCTACGAAGCGGT 60.179 55.000 0.00 0.00 37.86 5.68
1703 3461 0.103208 AGATTCTGCCTACGAAGCGG 59.897 55.000 0.00 0.00 38.00 5.52
1704 3462 1.203928 CAGATTCTGCCTACGAAGCG 58.796 55.000 0.00 0.00 32.43 4.68
1795 3564 6.708949 GTGTTTTTCACCTCAGACTAATGGTA 59.291 38.462 0.00 0.00 40.84 3.25
1825 3602 5.235516 ACGAGAAATGCTAATATAACCCCG 58.764 41.667 0.00 0.00 0.00 5.73
1918 3697 5.334414 GGAACTCATTGCGCAGAATATTAGG 60.334 44.000 11.31 0.00 0.00 2.69
1979 3758 4.274459 GCAGCTTGATACACTAATCTTGGG 59.726 45.833 0.00 0.00 0.00 4.12
2013 3792 5.353394 AAGCCTGGTGAATCGACTTATTA 57.647 39.130 0.00 0.00 0.00 0.98
2091 3872 6.521151 AAGAAGGTGCCAATAAAGAATGAG 57.479 37.500 0.00 0.00 0.00 2.90
2092 3873 7.669722 ACTTAAGAAGGTGCCAATAAAGAATGA 59.330 33.333 10.09 0.00 0.00 2.57
2248 4036 6.830114 ATAACAACGTTTGATAGCTAGAGC 57.170 37.500 0.00 0.00 42.49 4.09
2372 4170 1.140252 GGGGTGTACTTCTGTGTGTGT 59.860 52.381 0.00 0.00 0.00 3.72
2373 4171 1.542547 GGGGGTGTACTTCTGTGTGTG 60.543 57.143 0.00 0.00 0.00 3.82
2374 4172 0.763035 GGGGGTGTACTTCTGTGTGT 59.237 55.000 0.00 0.00 0.00 3.72
2375 4173 1.002087 GAGGGGGTGTACTTCTGTGTG 59.998 57.143 0.00 0.00 0.00 3.82
2376 4174 1.349067 GAGGGGGTGTACTTCTGTGT 58.651 55.000 0.00 0.00 0.00 3.72
2377 4175 0.613777 GGAGGGGGTGTACTTCTGTG 59.386 60.000 0.00 0.00 0.00 3.66
2378 4176 0.192566 TGGAGGGGGTGTACTTCTGT 59.807 55.000 0.00 0.00 0.00 3.41
2379 4177 1.003233 GTTGGAGGGGGTGTACTTCTG 59.997 57.143 0.00 0.00 0.00 3.02
2380 4178 1.359168 GTTGGAGGGGGTGTACTTCT 58.641 55.000 0.00 0.00 0.00 2.85
2381 4179 1.061546 TGTTGGAGGGGGTGTACTTC 58.938 55.000 0.00 0.00 0.00 3.01
2382 4180 0.769247 GTGTTGGAGGGGGTGTACTT 59.231 55.000 0.00 0.00 0.00 2.24
2383 4181 0.400815 TGTGTTGGAGGGGGTGTACT 60.401 55.000 0.00 0.00 0.00 2.73
2384 4182 0.250597 GTGTGTTGGAGGGGGTGTAC 60.251 60.000 0.00 0.00 0.00 2.90
2385 4183 0.694783 TGTGTGTTGGAGGGGGTGTA 60.695 55.000 0.00 0.00 0.00 2.90
2386 4184 2.004120 TGTGTGTTGGAGGGGGTGT 61.004 57.895 0.00 0.00 0.00 4.16
2387 4185 1.528309 GTGTGTGTTGGAGGGGGTG 60.528 63.158 0.00 0.00 0.00 4.61
2388 4186 1.994885 CTGTGTGTGTTGGAGGGGGT 61.995 60.000 0.00 0.00 0.00 4.95
2389 4187 1.228245 CTGTGTGTGTTGGAGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
2390 4188 0.182537 TTCTGTGTGTGTTGGAGGGG 59.817 55.000 0.00 0.00 0.00 4.79
2391 4189 1.134098 ACTTCTGTGTGTGTTGGAGGG 60.134 52.381 0.00 0.00 0.00 4.30
2392 4190 2.332063 ACTTCTGTGTGTGTTGGAGG 57.668 50.000 0.00 0.00 0.00 4.30
2393 4191 4.631131 TGATACTTCTGTGTGTGTTGGAG 58.369 43.478 0.00 0.00 0.00 3.86
2394 4192 4.681074 TGATACTTCTGTGTGTGTTGGA 57.319 40.909 0.00 0.00 0.00 3.53
2395 4193 5.947228 ATTGATACTTCTGTGTGTGTTGG 57.053 39.130 0.00 0.00 0.00 3.77
2396 4194 7.803189 GGTTAATTGATACTTCTGTGTGTGTTG 59.197 37.037 0.00 0.00 0.00 3.33
2397 4195 7.500892 TGGTTAATTGATACTTCTGTGTGTGTT 59.499 33.333 0.00 0.00 0.00 3.32
2398 4196 6.995686 TGGTTAATTGATACTTCTGTGTGTGT 59.004 34.615 0.00 0.00 0.00 3.72
2399 4197 7.041440 TGTGGTTAATTGATACTTCTGTGTGTG 60.041 37.037 0.00 0.00 0.00 3.82
2415 4215 7.093771 CCAGATTCTTAAAGCCTGTGGTTAATT 60.094 37.037 0.00 0.00 0.00 1.40
2474 4274 2.741517 CGCACCACTGATTAACACATCA 59.258 45.455 0.00 0.00 0.00 3.07
2495 4295 2.527100 GAGAATCACATGCTTGCAAGC 58.473 47.619 38.49 38.49 43.76 4.01
2601 4403 2.783828 AGATCAACTCGGCATAGTCG 57.216 50.000 0.00 0.00 0.00 4.18
2609 4411 3.601443 AGGAAGACAAGATCAACTCGG 57.399 47.619 0.00 0.00 0.00 4.63
2611 4413 4.646572 ACCAAGGAAGACAAGATCAACTC 58.353 43.478 0.00 0.00 0.00 3.01
2817 4735 4.811024 CCATATCATTGACACGCAGTAGTT 59.189 41.667 0.00 0.00 41.61 2.24
2819 4737 4.371786 ACCATATCATTGACACGCAGTAG 58.628 43.478 0.00 0.00 41.61 2.57
2858 4776 9.736023 TGCAAAACAACAAAATAAACAAAACTT 57.264 22.222 0.00 0.00 0.00 2.66
2969 4887 7.282332 TCAACCAACATGAACAATAACATGA 57.718 32.000 12.90 0.00 44.28 3.07
3019 4937 6.597562 ACATGGTAAACAGAACAACTTAGGA 58.402 36.000 0.00 0.00 0.00 2.94
3160 5129 6.577103 ACAGACCATATCTAACACACTGATG 58.423 40.000 0.00 0.00 35.15 3.07
3400 5381 9.489393 GAATTTCACAAAACATTTCCTTTTCAC 57.511 29.630 0.00 0.00 0.00 3.18
3420 5401 4.918810 AAAGGTCCACACAGTGAATTTC 57.081 40.909 7.81 0.00 35.23 2.17
3923 6072 1.073923 AGATGCCAAACTCGGGAAACT 59.926 47.619 0.00 0.00 0.00 2.66
3924 6073 1.534729 AGATGCCAAACTCGGGAAAC 58.465 50.000 0.00 0.00 0.00 2.78
3930 6079 1.656095 GAGACGAAGATGCCAAACTCG 59.344 52.381 0.00 0.00 0.00 4.18
3987 6147 5.934625 AGACATGACCAAACACTAGAATCAC 59.065 40.000 0.00 0.00 0.00 3.06
4217 6390 8.075574 CACTTCCTGCATCGCAATAATTATTAA 58.924 33.333 10.34 0.75 38.41 1.40
4241 6416 7.559590 AGTCATGCAGAAATAATACTTCCAC 57.440 36.000 0.00 0.00 0.00 4.02
4268 6443 5.934935 AAAATAAACACTACTGGGACACG 57.065 39.130 0.00 0.00 0.00 4.49
4322 6503 5.084055 GCAACATGTTACTAAGGCGTAAAC 58.916 41.667 11.53 0.00 31.73 2.01
4336 6518 6.449698 CAGAGTTGGATTAAAGCAACATGTT 58.550 36.000 4.92 4.92 0.00 2.71
4371 6554 5.069119 GCAACCTTTATAATGCTTAGGCCTT 59.931 40.000 12.58 0.00 37.74 4.35
4441 6624 3.936461 TCCACATTAGCCTACCTATGGT 58.064 45.455 0.00 0.00 40.16 3.55
4450 6633 4.280929 GGACTTTTTGTTCCACATTAGCCT 59.719 41.667 0.00 0.00 0.00 4.58
4451 6634 4.556233 GGACTTTTTGTTCCACATTAGCC 58.444 43.478 0.00 0.00 0.00 3.93
4452 6635 4.556233 GGGACTTTTTGTTCCACATTAGC 58.444 43.478 0.00 0.00 44.02 3.09
4453 6636 4.320935 CGGGGACTTTTTGTTCCACATTAG 60.321 45.833 0.00 0.00 46.49 1.73
4556 6749 6.681777 AGACAGCCAAACATGAATTCTTTAC 58.318 36.000 7.05 0.00 0.00 2.01
4646 7572 5.705609 ACATTTGACCAAGCGTTAAATCT 57.294 34.783 0.00 0.00 38.29 2.40
4655 7581 8.755696 TCACAATAATTAACATTTGACCAAGC 57.244 30.769 4.03 0.00 0.00 4.01
4802 7728 6.936335 TGACAGAAAGCAATGAAATCTAGACA 59.064 34.615 0.00 0.00 0.00 3.41
5123 8181 3.274288 CATAAGGGACCTGCAAGAAGAC 58.726 50.000 0.00 0.00 34.07 3.01
5419 8741 1.674322 ACCAAATCCTTCGTGGCGG 60.674 57.895 0.00 0.00 35.72 6.13
5494 8816 3.243873 CGGGAAGCTTATAGACATCTGCA 60.244 47.826 0.00 0.00 0.00 4.41
5495 8817 3.321497 CGGGAAGCTTATAGACATCTGC 58.679 50.000 0.00 0.00 0.00 4.26
5498 8820 4.810191 ATCCGGGAAGCTTATAGACATC 57.190 45.455 0.00 0.00 0.00 3.06
5500 8822 5.580998 AGATATCCGGGAAGCTTATAGACA 58.419 41.667 0.00 0.00 0.00 3.41
5526 8876 7.719633 GGGCAGTGGATTAGATAAGAACAATAA 59.280 37.037 0.00 0.00 0.00 1.40
5607 8960 1.980765 AGAACATCCTTCACAGCCTCA 59.019 47.619 0.00 0.00 0.00 3.86
5613 8966 5.827756 TCTACTCCTAGAACATCCTTCACA 58.172 41.667 0.00 0.00 0.00 3.58
5786 9169 7.556996 GGAACCAGTAGTAGGATATATCGACAT 59.443 40.741 15.17 0.00 0.00 3.06
5981 9371 6.934048 ACAAAGAGTGAAGAAAAGAAGAGG 57.066 37.500 0.00 0.00 0.00 3.69
6021 9412 9.474920 CAAATGAGAAATGCCAAGTAACTAAAA 57.525 29.630 0.00 0.00 0.00 1.52
6023 9414 8.081633 CACAAATGAGAAATGCCAAGTAACTAA 58.918 33.333 0.00 0.00 0.00 2.24
6025 9416 6.449698 CACAAATGAGAAATGCCAAGTAACT 58.550 36.000 0.00 0.00 0.00 2.24
6026 9417 5.634859 CCACAAATGAGAAATGCCAAGTAAC 59.365 40.000 0.00 0.00 0.00 2.50
6029 9420 3.896888 TCCACAAATGAGAAATGCCAAGT 59.103 39.130 0.00 0.00 0.00 3.16
6030 9421 4.021719 AGTCCACAAATGAGAAATGCCAAG 60.022 41.667 0.00 0.00 0.00 3.61
6038 9434 3.316029 CAGCAACAGTCCACAAATGAGAA 59.684 43.478 0.00 0.00 0.00 2.87
6049 9445 0.959372 ATCAGCAGCAGCAACAGTCC 60.959 55.000 3.17 0.00 45.49 3.85
6052 9448 4.514066 TCAATATATCAGCAGCAGCAACAG 59.486 41.667 3.17 0.00 45.49 3.16
6094 9494 2.874701 AGCAGCACACTGTTGTAAAGAG 59.125 45.455 0.00 0.00 46.30 2.85
6095 9495 2.917933 AGCAGCACACTGTTGTAAAGA 58.082 42.857 0.00 0.00 46.30 2.52
6096 9496 6.536582 AGATATAGCAGCACACTGTTGTAAAG 59.463 38.462 0.00 0.00 46.30 1.85
6099 9499 5.127031 TCAGATATAGCAGCACACTGTTGTA 59.873 40.000 0.00 0.00 46.30 2.41
6103 9503 4.081476 TGTTCAGATATAGCAGCACACTGT 60.081 41.667 0.00 0.00 46.30 3.55
6106 9506 4.319333 GCATGTTCAGATATAGCAGCACAC 60.319 45.833 0.00 0.00 0.00 3.82
6109 9509 4.075963 TGCATGTTCAGATATAGCAGCA 57.924 40.909 0.00 0.00 0.00 4.41
6110 9510 5.624344 AATGCATGTTCAGATATAGCAGC 57.376 39.130 0.00 0.00 33.69 5.25
6162 9562 6.463995 AACAAACAGACTAGGAAATGCAAA 57.536 33.333 0.00 0.00 0.00 3.68
6163 9563 6.127479 ACAAACAAACAGACTAGGAAATGCAA 60.127 34.615 0.00 0.00 0.00 4.08
6166 9566 6.697019 CCAACAAACAAACAGACTAGGAAATG 59.303 38.462 0.00 0.00 0.00 2.32
6167 9567 6.183360 CCCAACAAACAAACAGACTAGGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
6168 9568 5.126384 CCCAACAAACAAACAGACTAGGAAA 59.874 40.000 0.00 0.00 0.00 3.13
6169 9569 4.642885 CCCAACAAACAAACAGACTAGGAA 59.357 41.667 0.00 0.00 0.00 3.36
6170 9570 4.204012 CCCAACAAACAAACAGACTAGGA 58.796 43.478 0.00 0.00 0.00 2.94
6171 9571 3.951680 ACCCAACAAACAAACAGACTAGG 59.048 43.478 0.00 0.00 0.00 3.02
6172 9572 4.638421 TCACCCAACAAACAAACAGACTAG 59.362 41.667 0.00 0.00 0.00 2.57
6173 9573 4.396790 GTCACCCAACAAACAAACAGACTA 59.603 41.667 0.00 0.00 0.00 2.59
6174 9574 3.192633 GTCACCCAACAAACAAACAGACT 59.807 43.478 0.00 0.00 0.00 3.24
6175 9575 3.057174 TGTCACCCAACAAACAAACAGAC 60.057 43.478 0.00 0.00 0.00 3.51
6178 9578 5.860941 ATATGTCACCCAACAAACAAACA 57.139 34.783 0.00 0.00 31.81 2.83
6179 9579 7.593644 GTCTTATATGTCACCCAACAAACAAAC 59.406 37.037 0.00 0.00 31.81 2.93
6181 9581 6.207810 GGTCTTATATGTCACCCAACAAACAA 59.792 38.462 0.00 0.00 31.81 2.83
6183 9583 6.190954 GGTCTTATATGTCACCCAACAAAC 57.809 41.667 0.00 0.00 31.81 2.93
6191 9591 7.404671 AAACAAATGGGTCTTATATGTCACC 57.595 36.000 0.00 0.00 0.00 4.02
6192 9592 8.952278 TGTAAACAAATGGGTCTTATATGTCAC 58.048 33.333 0.00 0.00 0.00 3.67
6220 9620 6.156949 ACATATGGAAACTACTCAGTGGATGT 59.843 38.462 7.80 0.00 34.36 3.06
6223 9623 7.563556 TCATACATATGGAAACTACTCAGTGGA 59.436 37.037 7.80 0.00 33.05 4.02
6246 9646 2.865119 TGTGGCATTCTGTCAGTCAT 57.135 45.000 0.00 0.00 29.65 3.06
6248 9648 2.417933 GTCATGTGGCATTCTGTCAGTC 59.582 50.000 0.00 0.00 29.65 3.51
6249 9649 2.039480 AGTCATGTGGCATTCTGTCAGT 59.961 45.455 0.00 0.00 29.65 3.41
6252 9652 2.703416 TCAGTCATGTGGCATTCTGTC 58.297 47.619 0.00 0.00 0.00 3.51
6253 9653 2.865119 TCAGTCATGTGGCATTCTGT 57.135 45.000 0.00 0.00 0.00 3.41
6260 9862 6.158598 ACACAAATAAATTCAGTCATGTGGC 58.841 36.000 7.39 0.00 40.78 5.01
6281 9883 7.756558 AGCAATAAGAAGAGCAGATTTTACAC 58.243 34.615 0.00 0.00 0.00 2.90
6292 9894 4.509600 ACGCATCTTAGCAATAAGAAGAGC 59.490 41.667 2.11 6.23 39.26 4.09
6293 9895 5.521735 ACACGCATCTTAGCAATAAGAAGAG 59.478 40.000 2.11 2.90 39.26 2.85
6294 9896 5.419542 ACACGCATCTTAGCAATAAGAAGA 58.580 37.500 2.11 0.00 39.26 2.87
6295 9897 5.725110 ACACGCATCTTAGCAATAAGAAG 57.275 39.130 2.11 0.00 39.26 2.85
6296 9898 5.220397 CGAACACGCATCTTAGCAATAAGAA 60.220 40.000 2.11 0.00 39.26 2.52
6316 9918 4.333095 TGATGTACTCAGTAGAGAGCGAAC 59.667 45.833 0.00 0.00 44.98 3.95
6324 9926 8.809468 ATTGTACTTCTGATGTACTCAGTAGA 57.191 34.615 25.07 8.66 46.77 2.59
6333 9935 8.453320 CAAATGCAAGATTGTACTTCTGATGTA 58.547 33.333 0.00 0.00 0.00 2.29
6335 9937 6.252869 GCAAATGCAAGATTGTACTTCTGATG 59.747 38.462 0.00 0.00 41.59 3.07
6336 9938 6.327934 GCAAATGCAAGATTGTACTTCTGAT 58.672 36.000 0.00 0.00 41.59 2.90
6337 9939 5.617529 CGCAAATGCAAGATTGTACTTCTGA 60.618 40.000 6.18 0.00 42.21 3.27
6338 9940 4.556135 CGCAAATGCAAGATTGTACTTCTG 59.444 41.667 6.18 0.00 42.21 3.02
6339 9941 4.216257 ACGCAAATGCAAGATTGTACTTCT 59.784 37.500 6.18 0.00 42.21 2.85
6340 9942 4.475944 ACGCAAATGCAAGATTGTACTTC 58.524 39.130 6.18 0.00 42.21 3.01
6343 9950 3.181541 GCAACGCAAATGCAAGATTGTAC 60.182 43.478 6.18 0.00 43.29 2.90
6349 9956 1.401409 GCTAGCAACGCAAATGCAAGA 60.401 47.619 10.63 0.00 46.22 3.02
6510 10131 3.053896 TCGCCGCAGAAGTCGAGA 61.054 61.111 0.00 0.00 0.00 4.04
6541 10162 2.983030 GACAATGGCGTGGGTGCA 60.983 61.111 0.00 0.00 36.28 4.57
6546 10167 0.664761 GGATGATGACAATGGCGTGG 59.335 55.000 0.00 0.00 0.00 4.94
6556 10177 0.179111 TCGCCGTTGAGGATGATGAC 60.179 55.000 0.00 0.00 45.00 3.06
6564 10185 3.589654 TTGGAGCTCGCCGTTGAGG 62.590 63.158 7.83 0.00 44.97 3.86
6870 10503 4.077844 TGTACGCGTACAGGGTGA 57.922 55.556 40.10 21.95 46.11 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.