Multiple sequence alignment - TraesCS1A01G424700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G424700 chr1A 100.000 4027 0 0 1 4027 579676386 579680412 0.000000e+00 7437
1 TraesCS1A01G424700 chr1A 100.000 3537 0 0 4468 8004 579680853 579684389 0.000000e+00 6532
2 TraesCS1A01G424700 chr1A 98.540 2535 34 3 5472 8004 129995185 129997718 0.000000e+00 4473
3 TraesCS1A01G424700 chr1A 84.073 879 119 11 1256 2115 579421527 579422403 0.000000e+00 828
4 TraesCS1A01G424700 chr1A 90.693 505 39 4 5931 6434 561110541 561111038 0.000000e+00 665
5 TraesCS1A01G424700 chr1A 89.790 333 30 2 4471 4803 14364975 14365303 2.670000e-114 424
6 TraesCS1A01G424700 chr1A 90.955 199 16 2 3116 3313 579679705 579679902 4.760000e-67 267
7 TraesCS1A01G424700 chr1A 77.600 250 52 3 1679 1926 579572515 579572762 1.800000e-31 148
8 TraesCS1A01G424700 chr1A 94.253 87 2 3 5387 5472 252573475 252573559 6.520000e-26 130
9 TraesCS1A01G424700 chr1A 94.253 87 2 3 5387 5472 369779817 369779733 6.520000e-26 130
10 TraesCS1A01G424700 chr6A 96.846 2061 63 2 5472 7530 19763840 19761780 0.000000e+00 3445
11 TraesCS1A01G424700 chr6A 96.970 594 17 1 4807 5399 590545622 590546215 0.000000e+00 996
12 TraesCS1A01G424700 chr6A 95.981 423 15 1 7526 7946 19753215 19752793 0.000000e+00 686
13 TraesCS1A01G424700 chr6A 94.253 87 2 3 5387 5472 258006603 258006687 6.520000e-26 130
14 TraesCS1A01G424700 chr6A 98.438 64 1 0 7941 8004 19751059 19750996 6.560000e-21 113
15 TraesCS1A01G424700 chr4B 94.198 1896 101 3 6114 8004 565580350 565578459 0.000000e+00 2883
16 TraesCS1A01G424700 chr4B 91.358 648 52 4 5473 6118 565581112 565580467 0.000000e+00 883
17 TraesCS1A01G424700 chr4B 94.253 87 2 3 5387 5472 432980719 432980635 6.520000e-26 130
18 TraesCS1A01G424700 chr4B 94.253 87 2 3 5387 5472 603962355 603962439 6.520000e-26 130
19 TraesCS1A01G424700 chr4B 94.253 87 2 3 5387 5472 603970356 603970440 6.520000e-26 130
20 TraesCS1A01G424700 chr7A 91.012 2025 148 15 5472 7466 357983472 357985492 0.000000e+00 2700
21 TraesCS1A01G424700 chr7A 92.891 1041 67 4 1 1040 33769876 33768842 0.000000e+00 1506
22 TraesCS1A01G424700 chr7A 85.623 779 73 25 5694 6437 621029741 621028967 0.000000e+00 782
23 TraesCS1A01G424700 chr7A 93.857 407 24 1 7599 8004 357985487 357985893 5.310000e-171 612
24 TraesCS1A01G424700 chr7A 92.802 389 25 2 2574 2959 671183647 671183259 1.950000e-155 560
25 TraesCS1A01G424700 chr7A 92.950 383 25 2 2579 2959 88932663 88932281 2.520000e-154 556
26 TraesCS1A01G424700 chr3B 92.049 1786 127 10 5472 7248 668513108 668514887 0.000000e+00 2497
27 TraesCS1A01G424700 chr3B 89.592 759 56 10 3277 4025 89590302 89591047 0.000000e+00 942
28 TraesCS1A01G424700 chr3B 89.209 556 56 4 7226 7781 806514091 806513540 0.000000e+00 691
29 TraesCS1A01G424700 chr3B 92.602 392 23 3 2574 2959 89589790 89590181 7.020000e-155 558
30 TraesCS1A01G424700 chr3B 91.558 154 13 0 7733 7886 668515111 668515264 6.290000e-51 213
31 TraesCS1A01G424700 chr3B 80.916 131 21 3 7718 7848 668514943 668515069 5.110000e-17 100
32 TraesCS1A01G424700 chr2B 93.626 1616 92 9 5473 7084 61127694 61129302 0.000000e+00 2403
33 TraesCS1A01G424700 chr2B 89.531 831 65 9 3183 4004 35022981 35022164 0.000000e+00 1033
34 TraesCS1A01G424700 chr2B 91.404 698 45 6 3330 4025 693 9 0.000000e+00 942
35 TraesCS1A01G424700 chr2B 90.204 490 16 12 2121 2579 764510624 764511112 1.910000e-170 610
36 TraesCS1A01G424700 chr2B 90.061 493 17 12 2121 2582 764835031 764834540 1.910000e-170 610
37 TraesCS1A01G424700 chr2B 92.708 384 25 2 2579 2959 1258 875 1.170000e-152 551
38 TraesCS1A01G424700 chr2B 91.906 383 29 2 2579 2959 35023438 35023056 1.180000e-147 534
39 TraesCS1A01G424700 chr2B 93.487 261 12 5 2122 2379 156836859 156836601 4.530000e-102 383
40 TraesCS1A01G424700 chr2B 91.954 261 13 6 2122 2379 156835561 156835306 7.640000e-95 359
41 TraesCS1A01G424700 chr2B 90.987 233 15 1 7654 7886 61129774 61130000 7.800000e-80 309
42 TraesCS1A01G424700 chr6B 93.449 1389 82 3 6114 7497 592036206 592034822 0.000000e+00 2052
43 TraesCS1A01G424700 chr6B 92.284 648 48 2 5473 6118 592036967 592036320 0.000000e+00 918
44 TraesCS1A01G424700 chr6B 91.332 623 41 4 3404 4025 506869415 506868805 0.000000e+00 839
45 TraesCS1A01G424700 chr6B 82.919 603 52 21 2707 3301 76005968 76006527 5.580000e-136 496
46 TraesCS1A01G424700 chr6B 91.445 339 25 2 4471 4809 716524522 716524188 5.660000e-126 462
47 TraesCS1A01G424700 chr2D 94.294 1034 54 4 1 1033 326264127 326265156 0.000000e+00 1578
48 TraesCS1A01G424700 chr2D 90.381 551 41 10 3475 4021 437961508 437962050 0.000000e+00 713
49 TraesCS1A01G424700 chr2D 90.157 254 17 8 2122 2371 625908008 625907759 2.790000e-84 324
50 TraesCS1A01G424700 chr2D 88.933 253 22 6 2122 2371 625910129 625909880 2.810000e-79 307
51 TraesCS1A01G424700 chr2D 88.583 254 21 8 2122 2371 625909091 625908842 1.310000e-77 302
52 TraesCS1A01G424700 chr1D 93.846 1040 56 4 1 1039 5359952 5358920 0.000000e+00 1559
53 TraesCS1A01G424700 chr1D 88.879 1178 103 16 6436 7590 468096460 468097632 0.000000e+00 1424
54 TraesCS1A01G424700 chr1D 86.842 988 92 19 5473 6434 468095284 468096259 0.000000e+00 1070
55 TraesCS1A01G424700 chr1D 95.238 651 31 0 1393 2043 482503480 482504130 0.000000e+00 1031
56 TraesCS1A01G424700 chr1D 85.491 641 81 6 1063 1703 482439884 482440512 0.000000e+00 658
57 TraesCS1A01G424700 chr1D 89.764 127 11 1 7722 7848 468097395 468097519 2.310000e-35 161
58 TraesCS1A01G424700 chr5D 93.462 1040 61 5 1 1039 556574115 556573082 0.000000e+00 1537
59 TraesCS1A01G424700 chr7D 93.173 1040 62 5 1 1039 591384501 591385532 0.000000e+00 1519
60 TraesCS1A01G424700 chr7D 92.981 1040 66 4 1 1039 599197575 599196542 0.000000e+00 1509
61 TraesCS1A01G424700 chr6D 93.084 1041 64 6 1 1039 4590425 4589391 0.000000e+00 1517
62 TraesCS1A01G424700 chr6D 90.361 249 20 4 2122 2368 15111803 15112049 2.790000e-84 324
63 TraesCS1A01G424700 chr5A 92.905 1043 68 6 1 1040 701351554 701352593 0.000000e+00 1511
64 TraesCS1A01G424700 chr5A 96.339 601 20 2 4801 5399 419769286 419769886 0.000000e+00 987
65 TraesCS1A01G424700 chr5A 96.633 594 19 1 4807 5399 202104903 202104310 0.000000e+00 985
66 TraesCS1A01G424700 chr5A 96.633 594 19 1 4807 5399 689105646 689105053 0.000000e+00 985
67 TraesCS1A01G424700 chr5A 96.477 596 19 2 4805 5399 65755106 65754512 0.000000e+00 983
68 TraesCS1A01G424700 chr5A 90.843 688 54 6 7164 7848 606476409 606477090 0.000000e+00 913
69 TraesCS1A01G424700 chr5A 85.500 600 60 16 5472 6045 606474637 606475235 1.150000e-167 601
70 TraesCS1A01G424700 chr5A 92.857 322 19 2 4476 4796 687272 686954 1.570000e-126 464
71 TraesCS1A01G424700 chr3A 92.988 1041 65 6 1 1039 35177927 35178961 0.000000e+00 1511
72 TraesCS1A01G424700 chr3A 96.633 594 19 1 4807 5399 607168441 607169034 0.000000e+00 985
73 TraesCS1A01G424700 chr3A 91.948 385 27 3 2579 2959 22538018 22538402 3.290000e-148 536
74 TraesCS1A01G424700 chr3A 86.994 346 16 13 2205 2521 672900 673245 5.900000e-96 363
75 TraesCS1A01G424700 chr1B 91.511 1072 70 3 1050 2116 670927017 670925962 0.000000e+00 1456
76 TraesCS1A01G424700 chr1B 91.263 1053 74 9 6523 7560 646459191 646460240 0.000000e+00 1419
77 TraesCS1A01G424700 chr1B 78.937 1035 178 23 1037 2057 670972676 670971668 0.000000e+00 667
78 TraesCS1A01G424700 chr1B 87.478 567 46 12 2707 3269 40861679 40862224 1.470000e-176 630
79 TraesCS1A01G424700 chr1B 91.317 334 26 2 4473 4806 40865696 40866026 3.410000e-123 453
80 TraesCS1A01G424700 chr1B 85.340 191 16 6 1102 1292 670961673 670961495 3.810000e-43 187
81 TraesCS1A01G424700 chr2A 95.522 737 30 2 2579 3314 59838539 59839273 0.000000e+00 1175
82 TraesCS1A01G424700 chr2A 85.758 983 101 24 5471 6431 750083725 750082760 0.000000e+00 1003
83 TraesCS1A01G424700 chr2A 96.796 593 19 0 4807 5399 772392590 772393182 0.000000e+00 990
84 TraesCS1A01G424700 chr2A 94.333 600 29 4 3433 4027 59839236 59839835 0.000000e+00 915
85 TraesCS1A01G424700 chr7B 91.263 847 59 12 3183 4017 59947795 59946952 0.000000e+00 1140
86 TraesCS1A01G424700 chr7B 89.696 854 64 11 3183 4025 680677365 680678205 0.000000e+00 1068
87 TraesCS1A01G424700 chr7B 89.176 850 65 16 3183 4021 746482613 746483446 0.000000e+00 1035
88 TraesCS1A01G424700 chr7B 96.352 466 15 2 3523 3986 639683191 639683656 0.000000e+00 765
89 TraesCS1A01G424700 chr7B 88.545 646 50 8 2579 3221 639682388 639683012 0.000000e+00 761
90 TraesCS1A01G424700 chr7B 92.237 438 31 3 2579 3013 59948273 59947836 1.140000e-172 617
91 TraesCS1A01G424700 chr7B 90.719 334 28 1 4473 4806 59944185 59943855 7.370000e-120 442
92 TraesCS1A01G424700 chr7B 91.623 191 12 3 3126 3314 59947641 59947453 2.220000e-65 261
93 TraesCS1A01G424700 chr7B 96.341 82 3 0 3023 3104 746482545 746482626 1.400000e-27 135
94 TraesCS1A01G424700 chr7B 96.341 82 3 0 3023 3104 747609612 747609693 1.400000e-27 135
95 TraesCS1A01G424700 chrUn 90.610 852 65 11 3183 4021 220231778 220232627 0.000000e+00 1116
96 TraesCS1A01G424700 chrUn 90.360 861 65 12 3183 4027 146270327 146269469 0.000000e+00 1114
97 TraesCS1A01G424700 chrUn 90.774 336 25 4 4471 4806 144016387 144016058 2.050000e-120 444
98 TraesCS1A01G424700 chrUn 91.641 323 23 2 4475 4796 220210744 220211063 2.050000e-120 444
99 TraesCS1A01G424700 chr4A 86.706 1008 92 25 5470 6437 730332412 730331407 0.000000e+00 1081
100 TraesCS1A01G424700 chr4A 96.633 594 19 1 4807 5399 528856126 528855533 0.000000e+00 985
101 TraesCS1A01G424700 chr4A 96.477 596 20 1 4805 5399 401632876 401632281 0.000000e+00 983
102 TraesCS1A01G424700 chr4A 89.488 742 55 14 3277 4007 609302195 609302924 0.000000e+00 917
103 TraesCS1A01G424700 chr4A 90.493 568 35 7 3478 4027 714121716 714121150 0.000000e+00 732
104 TraesCS1A01G424700 chr4A 88.122 623 59 14 7226 7848 730330606 730329999 0.000000e+00 726
105 TraesCS1A01G424700 chr4A 88.592 561 38 12 2714 3269 714122476 714121937 0.000000e+00 658
106 TraesCS1A01G424700 chr4A 92.268 388 26 2 2576 2959 609301687 609302074 1.520000e-151 547
107 TraesCS1A01G424700 chr4A 93.487 261 12 5 2122 2379 666446661 666446403 4.530000e-102 383
108 TraesCS1A01G424700 chr4A 94.253 87 2 3 5387 5472 225185941 225186025 6.520000e-26 130
109 TraesCS1A01G424700 chr4A 94.253 87 2 3 5387 5472 290127562 290127646 6.520000e-26 130
110 TraesCS1A01G424700 chr4A 94.253 87 2 3 5387 5472 682317198 682317114 6.520000e-26 130
111 TraesCS1A01G424700 chr5B 89.009 555 58 3 7227 7781 39982078 39982629 0.000000e+00 684
112 TraesCS1A01G424700 chr5B 93.528 309 19 1 2767 3074 523761864 523762172 7.320000e-125 459
113 TraesCS1A01G424700 chr5B 90.308 227 17 1 3071 3297 523763616 523763837 7.860000e-75 292
114 TraesCS1A01G424700 chr3D 87.097 496 45 10 2787 3267 567932991 567933482 1.960000e-150 544
115 TraesCS1A01G424700 chr3D 91.018 334 28 1 4473 4806 567941277 567941608 4.410000e-122 449
116 TraesCS1A01G424700 chr3D 90.719 334 28 1 4473 4806 567937200 567937530 7.370000e-120 442
117 TraesCS1A01G424700 chr3D 90.580 138 12 1 2881 3017 567963832 567963969 1.770000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G424700 chr1A 579676386 579684389 8003 False 4745.333333 7437 96.985000 1 8004 3 chr1A.!!$F7 8003
1 TraesCS1A01G424700 chr1A 129995185 129997718 2533 False 4473.000000 4473 98.540000 5472 8004 1 chr1A.!!$F2 2532
2 TraesCS1A01G424700 chr1A 579421527 579422403 876 False 828.000000 828 84.073000 1256 2115 1 chr1A.!!$F5 859
3 TraesCS1A01G424700 chr6A 19761780 19763840 2060 True 3445.000000 3445 96.846000 5472 7530 1 chr6A.!!$R1 2058
4 TraesCS1A01G424700 chr6A 590545622 590546215 593 False 996.000000 996 96.970000 4807 5399 1 chr6A.!!$F2 592
5 TraesCS1A01G424700 chr6A 19750996 19753215 2219 True 399.500000 686 97.209500 7526 8004 2 chr6A.!!$R2 478
6 TraesCS1A01G424700 chr4B 565578459 565581112 2653 True 1883.000000 2883 92.778000 5473 8004 2 chr4B.!!$R2 2531
7 TraesCS1A01G424700 chr7A 357983472 357985893 2421 False 1656.000000 2700 92.434500 5472 8004 2 chr7A.!!$F1 2532
8 TraesCS1A01G424700 chr7A 33768842 33769876 1034 True 1506.000000 1506 92.891000 1 1040 1 chr7A.!!$R1 1039
9 TraesCS1A01G424700 chr7A 621028967 621029741 774 True 782.000000 782 85.623000 5694 6437 1 chr7A.!!$R3 743
10 TraesCS1A01G424700 chr3B 668513108 668515264 2156 False 936.666667 2497 88.174333 5472 7886 3 chr3B.!!$F2 2414
11 TraesCS1A01G424700 chr3B 89589790 89591047 1257 False 750.000000 942 91.097000 2574 4025 2 chr3B.!!$F1 1451
12 TraesCS1A01G424700 chr3B 806513540 806514091 551 True 691.000000 691 89.209000 7226 7781 1 chr3B.!!$R1 555
13 TraesCS1A01G424700 chr2B 61127694 61130000 2306 False 1356.000000 2403 92.306500 5473 7886 2 chr2B.!!$F2 2413
14 TraesCS1A01G424700 chr2B 35022164 35023438 1274 True 783.500000 1033 90.718500 2579 4004 2 chr2B.!!$R3 1425
15 TraesCS1A01G424700 chr2B 9 1258 1249 True 746.500000 942 92.056000 2579 4025 2 chr2B.!!$R2 1446
16 TraesCS1A01G424700 chr2B 156835306 156836859 1553 True 371.000000 383 92.720500 2122 2379 2 chr2B.!!$R4 257
17 TraesCS1A01G424700 chr6B 592034822 592036967 2145 True 1485.000000 2052 92.866500 5473 7497 2 chr6B.!!$R3 2024
18 TraesCS1A01G424700 chr6B 506868805 506869415 610 True 839.000000 839 91.332000 3404 4025 1 chr6B.!!$R1 621
19 TraesCS1A01G424700 chr6B 76005968 76006527 559 False 496.000000 496 82.919000 2707 3301 1 chr6B.!!$F1 594
20 TraesCS1A01G424700 chr2D 326264127 326265156 1029 False 1578.000000 1578 94.294000 1 1033 1 chr2D.!!$F1 1032
21 TraesCS1A01G424700 chr2D 437961508 437962050 542 False 713.000000 713 90.381000 3475 4021 1 chr2D.!!$F2 546
22 TraesCS1A01G424700 chr2D 625907759 625910129 2370 True 311.000000 324 89.224333 2122 2371 3 chr2D.!!$R1 249
23 TraesCS1A01G424700 chr1D 5358920 5359952 1032 True 1559.000000 1559 93.846000 1 1039 1 chr1D.!!$R1 1038
24 TraesCS1A01G424700 chr1D 482503480 482504130 650 False 1031.000000 1031 95.238000 1393 2043 1 chr1D.!!$F2 650
25 TraesCS1A01G424700 chr1D 468095284 468097632 2348 False 885.000000 1424 88.495000 5473 7848 3 chr1D.!!$F3 2375
26 TraesCS1A01G424700 chr1D 482439884 482440512 628 False 658.000000 658 85.491000 1063 1703 1 chr1D.!!$F1 640
27 TraesCS1A01G424700 chr5D 556573082 556574115 1033 True 1537.000000 1537 93.462000 1 1039 1 chr5D.!!$R1 1038
28 TraesCS1A01G424700 chr7D 591384501 591385532 1031 False 1519.000000 1519 93.173000 1 1039 1 chr7D.!!$F1 1038
29 TraesCS1A01G424700 chr7D 599196542 599197575 1033 True 1509.000000 1509 92.981000 1 1039 1 chr7D.!!$R1 1038
30 TraesCS1A01G424700 chr6D 4589391 4590425 1034 True 1517.000000 1517 93.084000 1 1039 1 chr6D.!!$R1 1038
31 TraesCS1A01G424700 chr5A 701351554 701352593 1039 False 1511.000000 1511 92.905000 1 1040 1 chr5A.!!$F2 1039
32 TraesCS1A01G424700 chr5A 419769286 419769886 600 False 987.000000 987 96.339000 4801 5399 1 chr5A.!!$F1 598
33 TraesCS1A01G424700 chr5A 202104310 202104903 593 True 985.000000 985 96.633000 4807 5399 1 chr5A.!!$R3 592
34 TraesCS1A01G424700 chr5A 689105053 689105646 593 True 985.000000 985 96.633000 4807 5399 1 chr5A.!!$R4 592
35 TraesCS1A01G424700 chr5A 65754512 65755106 594 True 983.000000 983 96.477000 4805 5399 1 chr5A.!!$R2 594
36 TraesCS1A01G424700 chr5A 606474637 606477090 2453 False 757.000000 913 88.171500 5472 7848 2 chr5A.!!$F3 2376
37 TraesCS1A01G424700 chr3A 35177927 35178961 1034 False 1511.000000 1511 92.988000 1 1039 1 chr3A.!!$F3 1038
38 TraesCS1A01G424700 chr3A 607168441 607169034 593 False 985.000000 985 96.633000 4807 5399 1 chr3A.!!$F4 592
39 TraesCS1A01G424700 chr1B 670925962 670927017 1055 True 1456.000000 1456 91.511000 1050 2116 1 chr1B.!!$R1 1066
40 TraesCS1A01G424700 chr1B 646459191 646460240 1049 False 1419.000000 1419 91.263000 6523 7560 1 chr1B.!!$F1 1037
41 TraesCS1A01G424700 chr1B 670971668 670972676 1008 True 667.000000 667 78.937000 1037 2057 1 chr1B.!!$R3 1020
42 TraesCS1A01G424700 chr1B 40861679 40866026 4347 False 541.500000 630 89.397500 2707 4806 2 chr1B.!!$F2 2099
43 TraesCS1A01G424700 chr2A 59838539 59839835 1296 False 1045.000000 1175 94.927500 2579 4027 2 chr2A.!!$F2 1448
44 TraesCS1A01G424700 chr2A 750082760 750083725 965 True 1003.000000 1003 85.758000 5471 6431 1 chr2A.!!$R1 960
45 TraesCS1A01G424700 chr2A 772392590 772393182 592 False 990.000000 990 96.796000 4807 5399 1 chr2A.!!$F1 592
46 TraesCS1A01G424700 chr7B 680677365 680678205 840 False 1068.000000 1068 89.696000 3183 4025 1 chr7B.!!$F1 842
47 TraesCS1A01G424700 chr7B 639682388 639683656 1268 False 763.000000 765 92.448500 2579 3986 2 chr7B.!!$F3 1407
48 TraesCS1A01G424700 chr7B 59943855 59948273 4418 True 615.000000 1140 91.460500 2579 4806 4 chr7B.!!$R1 2227
49 TraesCS1A01G424700 chr7B 746482545 746483446 901 False 585.000000 1035 92.758500 3023 4021 2 chr7B.!!$F4 998
50 TraesCS1A01G424700 chrUn 220231778 220232627 849 False 1116.000000 1116 90.610000 3183 4021 1 chrUn.!!$F2 838
51 TraesCS1A01G424700 chrUn 146269469 146270327 858 True 1114.000000 1114 90.360000 3183 4027 1 chrUn.!!$R2 844
52 TraesCS1A01G424700 chr4A 528855533 528856126 593 True 985.000000 985 96.633000 4807 5399 1 chr4A.!!$R2 592
53 TraesCS1A01G424700 chr4A 401632281 401632876 595 True 983.000000 983 96.477000 4805 5399 1 chr4A.!!$R1 594
54 TraesCS1A01G424700 chr4A 730329999 730332412 2413 True 903.500000 1081 87.414000 5470 7848 2 chr4A.!!$R6 2378
55 TraesCS1A01G424700 chr4A 609301687 609302924 1237 False 732.000000 917 90.878000 2576 4007 2 chr4A.!!$F3 1431
56 TraesCS1A01G424700 chr4A 714121150 714122476 1326 True 695.000000 732 89.542500 2714 4027 2 chr4A.!!$R5 1313
57 TraesCS1A01G424700 chr5B 39982078 39982629 551 False 684.000000 684 89.009000 7227 7781 1 chr5B.!!$F1 554
58 TraesCS1A01G424700 chr5B 523761864 523763837 1973 False 375.500000 459 91.918000 2767 3297 2 chr5B.!!$F2 530
59 TraesCS1A01G424700 chr3D 567932991 567941608 8617 False 478.333333 544 89.611333 2787 4806 3 chr3D.!!$F2 2019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 775 0.114364 CAAAGCCCCTAAACCACCCT 59.886 55.0 0.0 0.0 0.00 4.34 F
1223 1241 0.031917 TACTCCAATGCCCCGACCTA 60.032 55.0 0.0 0.0 0.00 3.08 F
2996 3287 0.032678 CGTGGAGCCTATGCCTACAG 59.967 60.0 0.0 0.0 38.69 2.74 F
3977 15112 0.040425 CCGTCCGGCAAAAGTCAAAG 60.040 55.0 0.0 0.0 0.00 2.77 F
4009 15144 0.037590 TGGTCAACTTGGATTCGGGG 59.962 55.0 0.0 0.0 0.00 5.73 F
4012 15147 0.037590 TCAACTTGGATTCGGGGTGG 59.962 55.0 0.0 0.0 0.00 4.61 F
5407 21193 0.104120 TCGATATGTGTTGCCCTCGG 59.896 55.0 0.0 0.0 0.00 4.63 F
5780 21567 0.107831 TTTCCCGACCAACACTCTGG 59.892 55.0 0.0 0.0 42.68 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 2456 0.173481 GCGAGACTGGTGCATGTAGA 59.827 55.000 0.00 0.00 0.00 2.59 R
3204 5026 0.249615 ACAGATCGATGACATGGCGG 60.250 55.000 0.54 0.00 0.00 6.13 R
3990 15125 0.037590 CCCCGAATCCAAGTTGACCA 59.962 55.000 3.87 0.00 0.00 4.02 R
5308 21094 0.255318 ATCCTTGGCAGCCTCTCTTG 59.745 55.000 14.15 0.00 0.00 3.02 R
5402 21188 0.468214 TCTACCAGATCCTGCCGAGG 60.468 60.000 0.00 0.00 41.39 4.63 R
5691 21477 1.072505 GCTGTTGGTCGGGAAAGGA 59.927 57.895 0.00 0.00 0.00 3.36 R
6827 23111 0.981183 TTCGGTTGCAGGTAGTGGAT 59.019 50.000 0.00 0.00 0.00 3.41 R
7084 23404 3.254166 ACAAACTAGTTGCTGCCTGAATG 59.746 43.478 9.34 2.03 41.31 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 237 1.238439 TGGAAGCAAAAGGAAGCGAG 58.762 50.000 0.00 0.00 35.48 5.03
289 292 4.406972 TCTCCATAATGAAGAGTCAGGGTG 59.593 45.833 0.00 0.00 37.14 4.61
362 365 6.206048 CCTAATGCTGATGATCATGTGCTAAA 59.794 38.462 14.30 2.11 0.00 1.85
421 424 7.816513 AGGATGATGATCGTATGACTTGTTATG 59.183 37.037 0.00 0.00 0.00 1.90
497 500 1.535896 GCATGATGCGAGCATGAAGAT 59.464 47.619 15.90 0.00 44.49 2.40
550 553 4.588106 TGAATTGGATTGAAGTGAAGGCAA 59.412 37.500 0.00 0.00 0.00 4.52
556 559 4.262164 GGATTGAAGTGAAGGCAAACATGT 60.262 41.667 0.00 0.00 0.00 3.21
756 760 3.901222 ACAACCTGAATTAACCCCCAAAG 59.099 43.478 0.00 0.00 0.00 2.77
771 775 0.114364 CAAAGCCCCTAAACCACCCT 59.886 55.000 0.00 0.00 0.00 4.34
827 833 2.433145 CTGCTCACGCGTGGATGT 60.433 61.111 36.41 0.00 39.65 3.06
867 874 0.753848 CACCAACCGGAACCAAAGGT 60.754 55.000 9.46 1.64 40.50 3.50
883 890 3.334054 GTCCTCCTGCCTGGGCTT 61.334 66.667 13.05 0.00 42.51 4.35
937 944 2.375173 GTTCGTGTAAGAACCGGGAT 57.625 50.000 6.32 0.00 43.33 3.85
948 955 2.848071 AGAACCGGGATTAAAGGCCTAA 59.152 45.455 5.16 0.00 0.00 2.69
1013 1020 1.917336 GATGGGCCTTACCAACCGGA 61.917 60.000 9.46 0.00 45.13 5.14
1021 1028 3.150767 CCTTACCAACCGGAACAAATGA 58.849 45.455 9.46 0.00 35.59 2.57
1022 1029 3.761752 CCTTACCAACCGGAACAAATGAT 59.238 43.478 9.46 0.00 35.59 2.45
1033 1040 6.663523 ACCGGAACAAATGATCCTTTTTCTAT 59.336 34.615 9.46 0.00 35.13 1.98
1042 1049 9.533831 AAATGATCCTTTTTCTATTAGTGGTGT 57.466 29.630 0.00 0.00 0.00 4.16
1176 1194 4.521062 GCGGCGACAGGATCAGCT 62.521 66.667 12.98 0.00 0.00 4.24
1216 1234 1.541233 CCTCGACATACTCCAATGCCC 60.541 57.143 0.00 0.00 0.00 5.36
1217 1235 0.468226 TCGACATACTCCAATGCCCC 59.532 55.000 0.00 0.00 0.00 5.80
1223 1241 0.031917 TACTCCAATGCCCCGACCTA 60.032 55.000 0.00 0.00 0.00 3.08
1313 1338 1.077501 CATGGACATCGCCACCCTT 60.078 57.895 0.00 0.00 41.56 3.95
1330 1355 3.902162 TTGTACCGCACCGTCGCTC 62.902 63.158 0.00 0.00 0.00 5.03
1456 1481 1.889530 GAAGTAGACCCGTGCCTGCT 61.890 60.000 0.00 0.00 0.00 4.24
1511 1536 2.037136 CCGCCTTGAGCTCACCTTG 61.037 63.158 18.03 7.07 40.39 3.61
1512 1537 1.004560 CGCCTTGAGCTCACCTTGA 60.005 57.895 18.03 0.00 40.39 3.02
1664 1689 2.600769 ACCGGTCTCCTTGACGCT 60.601 61.111 0.00 0.00 46.24 5.07
1823 1848 1.070289 ACCAGACTCCCGAAACTTGAC 59.930 52.381 0.00 0.00 0.00 3.18
1931 1962 4.238761 GCATCTGCAATGCTACATTCAT 57.761 40.909 19.93 0.00 41.52 2.57
1955 1989 2.899339 GCATTGCTCTCTCCGGCC 60.899 66.667 0.00 0.00 0.00 6.13
2059 2093 2.555757 CCTTCCTGAGCAACCTTTCAAG 59.444 50.000 0.00 0.00 0.00 3.02
2088 2122 8.787818 AGGTACCCATATTGATTTTCCTTTCTA 58.212 33.333 8.74 0.00 0.00 2.10
2089 2123 8.847196 GGTACCCATATTGATTTTCCTTTCTAC 58.153 37.037 0.00 0.00 0.00 2.59
2090 2124 9.628500 GTACCCATATTGATTTTCCTTTCTACT 57.372 33.333 0.00 0.00 0.00 2.57
2119 2153 9.533253 AAATTTATTTCTGACAAGTCAAACCTG 57.467 29.630 4.29 0.00 39.39 4.00
2120 2154 4.574599 ATTTCTGACAAGTCAAACCTGC 57.425 40.909 4.29 0.00 39.39 4.85
2228 2263 0.966179 AAGAAATTTGGTGGCCGGAC 59.034 50.000 5.05 0.56 0.00 4.79
2238 2273 2.682494 GGCCGGACCCTCACACTA 60.682 66.667 5.05 0.00 0.00 2.74
2241 2276 1.608336 CCGGACCCTCACACTACCA 60.608 63.158 0.00 0.00 0.00 3.25
2323 2360 2.355837 GGTCAGAGACGCACGCAA 60.356 61.111 0.00 0.00 32.65 4.85
2352 2389 2.417719 CACACTTCTCCACTAACAGCC 58.582 52.381 0.00 0.00 0.00 4.85
2353 2390 2.047061 ACACTTCTCCACTAACAGCCA 58.953 47.619 0.00 0.00 0.00 4.75
2354 2391 2.639839 ACACTTCTCCACTAACAGCCAT 59.360 45.455 0.00 0.00 0.00 4.40
2355 2392 3.005554 CACTTCTCCACTAACAGCCATG 58.994 50.000 0.00 0.00 0.00 3.66
2357 2394 0.983467 TCTCCACTAACAGCCATGCA 59.017 50.000 0.00 0.00 0.00 3.96
2359 2396 1.674441 CTCCACTAACAGCCATGCATG 59.326 52.381 20.19 20.19 0.00 4.06
2373 2410 2.101575 CATGCATGCACTCACGCC 59.898 61.111 25.37 0.00 28.85 5.68
2374 2411 2.360225 ATGCATGCACTCACGCCA 60.360 55.556 25.37 0.00 28.85 5.69
2375 2412 2.693762 ATGCATGCACTCACGCCAC 61.694 57.895 25.37 0.00 28.85 5.01
2376 2413 3.356267 GCATGCACTCACGCCACA 61.356 61.111 14.21 0.00 0.00 4.17
2377 2414 2.557805 CATGCACTCACGCCACAC 59.442 61.111 0.00 0.00 0.00 3.82
2378 2415 2.669569 ATGCACTCACGCCACACC 60.670 61.111 0.00 0.00 0.00 4.16
2389 2426 3.706373 CCACACCGGCCACTAGCT 61.706 66.667 0.00 0.00 43.05 3.32
2390 2427 2.125512 CACACCGGCCACTAGCTC 60.126 66.667 0.00 0.00 43.05 4.09
2391 2428 2.603473 ACACCGGCCACTAGCTCA 60.603 61.111 0.00 0.00 43.05 4.26
2392 2429 2.185350 CACCGGCCACTAGCTCAG 59.815 66.667 0.00 0.00 43.05 3.35
2393 2430 2.037367 ACCGGCCACTAGCTCAGA 59.963 61.111 0.00 0.00 43.05 3.27
2394 2431 2.352032 ACCGGCCACTAGCTCAGAC 61.352 63.158 0.00 0.00 43.05 3.51
2395 2432 2.103143 CGGCCACTAGCTCAGACG 59.897 66.667 2.24 0.00 43.05 4.18
2396 2433 2.407428 CGGCCACTAGCTCAGACGA 61.407 63.158 2.24 0.00 43.05 4.20
2397 2434 1.139947 GGCCACTAGCTCAGACGAC 59.860 63.158 0.00 0.00 43.05 4.34
2398 2435 1.139947 GCCACTAGCTCAGACGACC 59.860 63.158 0.00 0.00 38.99 4.79
2399 2436 1.316706 GCCACTAGCTCAGACGACCT 61.317 60.000 0.00 0.00 38.99 3.85
2400 2437 0.453793 CCACTAGCTCAGACGACCTG 59.546 60.000 0.00 0.00 44.27 4.00
2401 2438 0.453793 CACTAGCTCAGACGACCTGG 59.546 60.000 0.00 0.00 43.12 4.45
2402 2439 1.316706 ACTAGCTCAGACGACCTGGC 61.317 60.000 0.00 10.51 43.12 4.85
2403 2440 1.000771 TAGCTCAGACGACCTGGCT 60.001 57.895 19.50 19.50 45.19 4.75
2404 2441 1.315981 TAGCTCAGACGACCTGGCTG 61.316 60.000 21.93 0.00 43.96 4.85
2405 2442 2.125753 CTCAGACGACCTGGCTGC 60.126 66.667 9.07 0.00 43.12 5.25
2406 2443 2.601666 TCAGACGACCTGGCTGCT 60.602 61.111 0.00 0.00 43.12 4.24
2407 2444 1.304134 TCAGACGACCTGGCTGCTA 60.304 57.895 0.00 0.00 43.12 3.49
2408 2445 0.898326 TCAGACGACCTGGCTGCTAA 60.898 55.000 0.00 0.00 43.12 3.09
2409 2446 0.737715 CAGACGACCTGGCTGCTAAC 60.738 60.000 0.00 0.00 39.23 2.34
2410 2447 0.900647 AGACGACCTGGCTGCTAACT 60.901 55.000 0.00 0.00 0.00 2.24
2411 2448 0.737715 GACGACCTGGCTGCTAACTG 60.738 60.000 0.00 0.00 0.00 3.16
2412 2449 1.185618 ACGACCTGGCTGCTAACTGA 61.186 55.000 0.00 0.00 0.00 3.41
2413 2450 0.176680 CGACCTGGCTGCTAACTGAT 59.823 55.000 0.00 0.00 0.00 2.90
2414 2451 1.406069 CGACCTGGCTGCTAACTGATT 60.406 52.381 0.00 0.00 0.00 2.57
2415 2452 2.284190 GACCTGGCTGCTAACTGATTC 58.716 52.381 0.00 0.00 0.00 2.52
2419 2456 3.072184 CCTGGCTGCTAACTGATTCCTAT 59.928 47.826 0.00 0.00 0.00 2.57
2433 2470 4.655649 TGATTCCTATCTACATGCACCAGT 59.344 41.667 0.00 0.00 0.00 4.00
2436 2473 3.891977 TCCTATCTACATGCACCAGTCTC 59.108 47.826 0.00 0.00 0.00 3.36
2437 2474 2.879002 ATCTACATGCACCAGTCTCG 57.121 50.000 0.00 0.00 0.00 4.04
2440 2477 0.389817 TACATGCACCAGTCTCGCAC 60.390 55.000 0.00 0.00 38.73 5.34
2441 2478 1.375140 CATGCACCAGTCTCGCACT 60.375 57.895 0.00 0.00 38.73 4.40
2443 2480 0.952497 ATGCACCAGTCTCGCACTTG 60.952 55.000 0.00 0.00 38.73 3.16
2444 2481 2.959357 GCACCAGTCTCGCACTTGC 61.959 63.158 0.00 0.00 32.85 4.01
2456 2493 4.666253 ACTTGCGCTGCACCCCAT 62.666 61.111 9.73 0.00 38.71 4.00
2457 2494 2.438254 CTTGCGCTGCACCCCATA 60.438 61.111 9.73 0.00 38.71 2.74
2464 2505 3.636929 CTGCACCCCATAACGGCCA 62.637 63.158 2.24 0.00 0.00 5.36
2469 2510 1.077068 CCCCATAACGGCCACACAT 60.077 57.895 2.24 0.00 0.00 3.21
2475 2516 0.398696 TAACGGCCACACATGACCTT 59.601 50.000 2.24 0.00 0.00 3.50
2476 2517 1.172180 AACGGCCACACATGACCTTG 61.172 55.000 2.24 0.00 0.00 3.61
2477 2518 2.964978 GGCCACACATGACCTTGC 59.035 61.111 0.00 0.00 0.00 4.01
2478 2519 2.639327 GGCCACACATGACCTTGCC 61.639 63.158 0.00 0.70 0.00 4.52
2504 2545 0.748367 TTGCACGCCCACACAACTAA 60.748 50.000 0.00 0.00 0.00 2.24
2511 2552 3.135994 CGCCCACACAACTAACTAGTTT 58.864 45.455 14.49 0.00 43.57 2.66
2531 2572 6.672147 AGTTTCATGCAGCTAACAAACTAAG 58.328 36.000 9.35 0.00 33.39 2.18
2540 2581 6.437928 CAGCTAACAAACTAAGCAAATCACA 58.562 36.000 0.00 0.00 38.75 3.58
2547 2588 3.019564 ACTAAGCAAATCACATGGCTCC 58.980 45.455 0.00 0.00 35.11 4.70
2548 2589 1.927487 AAGCAAATCACATGGCTCCA 58.073 45.000 0.00 0.00 35.11 3.86
2549 2590 1.927487 AGCAAATCACATGGCTCCAA 58.073 45.000 0.00 0.00 28.71 3.53
2550 2591 1.547372 AGCAAATCACATGGCTCCAAC 59.453 47.619 0.00 0.00 28.71 3.77
2551 2592 1.547372 GCAAATCACATGGCTCCAACT 59.453 47.619 0.00 0.00 0.00 3.16
2552 2593 2.754552 GCAAATCACATGGCTCCAACTA 59.245 45.455 0.00 0.00 0.00 2.24
2553 2594 3.193267 GCAAATCACATGGCTCCAACTAA 59.807 43.478 0.00 0.00 0.00 2.24
2554 2595 4.676196 GCAAATCACATGGCTCCAACTAAG 60.676 45.833 0.00 0.00 0.00 2.18
2555 2596 4.307032 AATCACATGGCTCCAACTAAGT 57.693 40.909 0.00 0.00 0.00 2.24
2556 2597 3.057969 TCACATGGCTCCAACTAAGTG 57.942 47.619 0.00 0.00 0.00 3.16
2557 2598 1.470098 CACATGGCTCCAACTAAGTGC 59.530 52.381 0.00 0.00 0.00 4.40
2558 2599 1.352352 ACATGGCTCCAACTAAGTGCT 59.648 47.619 0.00 0.00 0.00 4.40
2559 2600 2.224867 ACATGGCTCCAACTAAGTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
2560 2601 3.009033 ACATGGCTCCAACTAAGTGCTTA 59.991 43.478 0.00 0.00 0.00 3.09
2561 2602 3.334583 TGGCTCCAACTAAGTGCTTAG 57.665 47.619 15.21 15.21 45.95 2.18
2562 2603 2.010497 GGCTCCAACTAAGTGCTTAGC 58.990 52.381 16.36 0.00 44.74 3.09
2563 2604 2.010497 GCTCCAACTAAGTGCTTAGCC 58.990 52.381 16.36 0.00 44.74 3.93
2564 2605 2.271800 CTCCAACTAAGTGCTTAGCCG 58.728 52.381 16.36 9.18 44.74 5.52
2565 2606 1.066430 TCCAACTAAGTGCTTAGCCGG 60.066 52.381 16.36 15.93 44.74 6.13
2566 2607 1.338769 CCAACTAAGTGCTTAGCCGGT 60.339 52.381 16.36 0.00 44.74 5.28
2567 2608 2.000447 CAACTAAGTGCTTAGCCGGTC 59.000 52.381 16.36 0.00 44.74 4.79
2568 2609 0.535797 ACTAAGTGCTTAGCCGGTCC 59.464 55.000 16.36 0.00 44.74 4.46
2569 2610 0.527817 CTAAGTGCTTAGCCGGTCCG 60.528 60.000 3.60 3.60 36.50 4.79
2624 2665 1.146041 GGCCACATCTATGCCGACA 59.854 57.895 0.00 0.00 35.08 4.35
2967 3258 1.610554 GGCCTACCACGAGCTACCAA 61.611 60.000 0.00 0.00 35.26 3.67
2989 3280 2.586079 CGCCACGTGGAGCCTATG 60.586 66.667 38.30 13.20 37.39 2.23
2990 3281 2.897350 GCCACGTGGAGCCTATGC 60.897 66.667 38.30 15.96 37.39 3.14
2991 3282 2.203070 CCACGTGGAGCCTATGCC 60.203 66.667 31.31 0.00 38.69 4.40
2992 3283 2.735772 CCACGTGGAGCCTATGCCT 61.736 63.158 31.31 0.00 38.69 4.75
2993 3284 1.399744 CCACGTGGAGCCTATGCCTA 61.400 60.000 31.31 0.00 38.69 3.93
2994 3285 0.249489 CACGTGGAGCCTATGCCTAC 60.249 60.000 7.95 0.00 38.69 3.18
2995 3286 0.686441 ACGTGGAGCCTATGCCTACA 60.686 55.000 0.00 0.00 38.69 2.74
2996 3287 0.032678 CGTGGAGCCTATGCCTACAG 59.967 60.000 0.00 0.00 38.69 2.74
2997 3288 0.250081 GTGGAGCCTATGCCTACAGC 60.250 60.000 0.00 0.00 44.14 4.40
2998 3289 0.399091 TGGAGCCTATGCCTACAGCT 60.399 55.000 0.00 0.00 44.23 4.24
2999 3290 1.133167 TGGAGCCTATGCCTACAGCTA 60.133 52.381 0.00 0.00 44.23 3.32
3000 3291 1.548269 GGAGCCTATGCCTACAGCTAG 59.452 57.143 0.00 0.00 44.23 3.42
3001 3292 1.548269 GAGCCTATGCCTACAGCTAGG 59.452 57.143 0.00 0.00 44.23 3.02
3007 3298 2.722487 CCTACAGCTAGGCCGTCG 59.278 66.667 0.00 0.00 33.12 5.12
3008 3299 2.722487 CTACAGCTAGGCCGTCGG 59.278 66.667 6.99 6.99 0.00 4.79
3020 3311 3.659850 CCGTCGGCATACATCTGAA 57.340 52.632 0.00 0.00 0.00 3.02
3021 3312 1.934589 CCGTCGGCATACATCTGAAA 58.065 50.000 0.00 0.00 0.00 2.69
3104 4926 1.319614 TGCCTCCACGTCATCGATCA 61.320 55.000 0.00 0.00 40.62 2.92
3204 5026 1.060937 GTCATCAATCCGCGTGCAC 59.939 57.895 6.82 6.82 0.00 4.57
3221 5043 0.249615 CACCGCCATGTCATCGATCT 60.250 55.000 0.00 0.00 0.00 2.75
3222 5044 0.249615 ACCGCCATGTCATCGATCTG 60.250 55.000 0.00 0.00 0.00 2.90
3225 5047 2.323059 CGCCATGTCATCGATCTGTAG 58.677 52.381 0.00 0.00 0.00 2.74
3275 5097 3.296854 ACCGTAAGCATACCTCAGATCA 58.703 45.455 0.00 0.00 0.00 2.92
3435 5266 2.281070 ATCGATCCATGGCCGTGC 60.281 61.111 20.27 5.18 0.00 5.34
3680 5880 0.250081 GACATCGGAGGGAATCTGGC 60.250 60.000 0.00 0.00 34.76 4.85
3762 7386 1.317613 GTGGAAGTGTTGTGGCATGA 58.682 50.000 0.00 0.00 0.00 3.07
3910 15045 3.966215 CGTGTTCGGGATGTTGCT 58.034 55.556 0.00 0.00 0.00 3.91
3911 15046 3.131326 CGTGTTCGGGATGTTGCTA 57.869 52.632 0.00 0.00 0.00 3.49
3912 15047 1.651987 CGTGTTCGGGATGTTGCTAT 58.348 50.000 0.00 0.00 0.00 2.97
3913 15048 1.327460 CGTGTTCGGGATGTTGCTATG 59.673 52.381 0.00 0.00 0.00 2.23
3914 15049 1.670811 GTGTTCGGGATGTTGCTATGG 59.329 52.381 0.00 0.00 0.00 2.74
3915 15050 1.308998 GTTCGGGATGTTGCTATGGG 58.691 55.000 0.00 0.00 0.00 4.00
3916 15051 0.465460 TTCGGGATGTTGCTATGGGC 60.465 55.000 0.00 0.00 42.22 5.36
3926 15061 2.682893 GCTATGGGCAGACTTGTCG 58.317 57.895 0.00 0.00 41.35 4.35
3927 15062 1.432270 GCTATGGGCAGACTTGTCGC 61.432 60.000 8.33 8.33 41.35 5.19
3928 15063 0.108186 CTATGGGCAGACTTGTCGCA 60.108 55.000 15.19 1.60 0.00 5.10
3929 15064 0.323302 TATGGGCAGACTTGTCGCAA 59.677 50.000 15.19 7.05 31.22 4.85
3930 15065 1.237285 ATGGGCAGACTTGTCGCAAC 61.237 55.000 15.19 10.06 31.22 4.17
3931 15066 2.617274 GGGCAGACTTGTCGCAACC 61.617 63.158 15.19 7.49 0.00 3.77
3932 15067 1.891919 GGCAGACTTGTCGCAACCA 60.892 57.895 15.19 0.00 0.00 3.67
3933 15068 1.571460 GCAGACTTGTCGCAACCAG 59.429 57.895 10.79 0.00 0.00 4.00
3934 15069 1.845809 GCAGACTTGTCGCAACCAGG 61.846 60.000 10.79 0.00 0.00 4.45
3935 15070 0.532862 CAGACTTGTCGCAACCAGGT 60.533 55.000 0.00 0.00 0.00 4.00
3936 15071 0.532862 AGACTTGTCGCAACCAGGTG 60.533 55.000 0.00 0.00 0.00 4.00
3937 15072 1.507141 GACTTGTCGCAACCAGGTGG 61.507 60.000 0.00 0.00 42.17 4.61
3938 15073 1.227823 CTTGTCGCAACCAGGTGGA 60.228 57.895 2.10 0.00 38.94 4.02
3939 15074 0.817634 CTTGTCGCAACCAGGTGGAA 60.818 55.000 2.10 0.00 38.94 3.53
3940 15075 0.817634 TTGTCGCAACCAGGTGGAAG 60.818 55.000 2.10 0.00 38.94 3.46
3941 15076 1.070786 GTCGCAACCAGGTGGAAGA 59.929 57.895 2.10 0.00 38.94 2.87
3942 15077 0.951040 GTCGCAACCAGGTGGAAGAG 60.951 60.000 2.10 0.00 38.94 2.85
3943 15078 1.118965 TCGCAACCAGGTGGAAGAGA 61.119 55.000 2.10 0.00 38.94 3.10
3944 15079 0.951040 CGCAACCAGGTGGAAGAGAC 60.951 60.000 2.10 0.00 38.94 3.36
3945 15080 0.606673 GCAACCAGGTGGAAGAGACC 60.607 60.000 2.10 0.00 38.94 3.85
3946 15081 0.764890 CAACCAGGTGGAAGAGACCA 59.235 55.000 2.10 0.00 38.94 4.02
3960 15095 1.949257 GACCACTTGTCAAAGCCCG 59.051 57.895 0.00 0.00 43.85 6.13
3961 15096 0.818040 GACCACTTGTCAAAGCCCGT 60.818 55.000 0.00 0.00 43.85 5.28
3962 15097 0.818040 ACCACTTGTCAAAGCCCGTC 60.818 55.000 0.00 0.00 36.84 4.79
3963 15098 1.515521 CCACTTGTCAAAGCCCGTCC 61.516 60.000 0.00 0.00 36.84 4.79
3964 15099 1.597027 ACTTGTCAAAGCCCGTCCG 60.597 57.895 0.00 0.00 36.84 4.79
3965 15100 2.281208 TTGTCAAAGCCCGTCCGG 60.281 61.111 0.00 0.00 0.00 5.14
3974 15109 2.281208 CCCGTCCGGCAAAAGTCA 60.281 61.111 0.00 0.00 0.00 3.41
3975 15110 1.894756 CCCGTCCGGCAAAAGTCAA 60.895 57.895 0.00 0.00 0.00 3.18
3976 15111 1.448922 CCCGTCCGGCAAAAGTCAAA 61.449 55.000 0.00 0.00 0.00 2.69
3977 15112 0.040425 CCGTCCGGCAAAAGTCAAAG 60.040 55.000 0.00 0.00 0.00 2.77
3978 15113 0.040425 CGTCCGGCAAAAGTCAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
3979 15114 0.313987 GTCCGGCAAAAGTCAAAGGG 59.686 55.000 0.00 0.00 0.00 3.95
3980 15115 1.006220 CCGGCAAAAGTCAAAGGGC 60.006 57.895 0.00 0.00 0.00 5.19
3981 15116 1.463553 CCGGCAAAAGTCAAAGGGCT 61.464 55.000 0.00 0.00 0.00 5.19
3982 15117 1.243902 CGGCAAAAGTCAAAGGGCTA 58.756 50.000 0.00 0.00 0.00 3.93
3983 15118 1.200020 CGGCAAAAGTCAAAGGGCTAG 59.800 52.381 0.00 0.00 0.00 3.42
3984 15119 2.514803 GGCAAAAGTCAAAGGGCTAGA 58.485 47.619 0.00 0.00 0.00 2.43
3985 15120 3.092301 GGCAAAAGTCAAAGGGCTAGAT 58.908 45.455 0.00 0.00 0.00 1.98
3986 15121 3.129462 GGCAAAAGTCAAAGGGCTAGATC 59.871 47.826 0.00 0.00 0.00 2.75
3987 15122 4.013050 GCAAAAGTCAAAGGGCTAGATCT 58.987 43.478 0.00 0.00 0.00 2.75
3988 15123 4.095632 GCAAAAGTCAAAGGGCTAGATCTC 59.904 45.833 0.00 0.00 0.00 2.75
3989 15124 4.495690 AAAGTCAAAGGGCTAGATCTCC 57.504 45.455 0.00 0.00 0.00 3.71
3990 15125 3.413105 AGTCAAAGGGCTAGATCTCCT 57.587 47.619 0.00 0.00 0.00 3.69
3991 15126 3.037549 AGTCAAAGGGCTAGATCTCCTG 58.962 50.000 0.00 0.00 0.00 3.86
3992 15127 2.103941 GTCAAAGGGCTAGATCTCCTGG 59.896 54.545 0.00 0.00 0.00 4.45
3993 15128 2.122768 CAAAGGGCTAGATCTCCTGGT 58.877 52.381 0.00 0.00 0.00 4.00
3994 15129 2.095604 AAGGGCTAGATCTCCTGGTC 57.904 55.000 0.00 0.00 0.00 4.02
3995 15130 0.937441 AGGGCTAGATCTCCTGGTCA 59.063 55.000 0.00 0.00 28.44 4.02
3996 15131 1.292242 AGGGCTAGATCTCCTGGTCAA 59.708 52.381 0.00 0.00 28.44 3.18
3997 15132 1.414550 GGGCTAGATCTCCTGGTCAAC 59.585 57.143 0.00 0.00 28.44 3.18
3998 15133 2.393646 GGCTAGATCTCCTGGTCAACT 58.606 52.381 0.00 0.00 0.00 3.16
3999 15134 2.769095 GGCTAGATCTCCTGGTCAACTT 59.231 50.000 0.00 0.00 0.00 2.66
4000 15135 3.431486 GGCTAGATCTCCTGGTCAACTTG 60.431 52.174 0.00 0.00 0.00 3.16
4001 15136 3.431486 GCTAGATCTCCTGGTCAACTTGG 60.431 52.174 0.00 0.00 0.00 3.61
4002 15137 2.907892 AGATCTCCTGGTCAACTTGGA 58.092 47.619 0.00 0.00 0.00 3.53
4003 15138 3.458831 AGATCTCCTGGTCAACTTGGAT 58.541 45.455 0.00 0.00 0.00 3.41
4004 15139 3.848975 AGATCTCCTGGTCAACTTGGATT 59.151 43.478 0.00 0.00 0.00 3.01
4005 15140 3.703001 TCTCCTGGTCAACTTGGATTC 57.297 47.619 0.00 0.00 0.00 2.52
4006 15141 2.028112 TCTCCTGGTCAACTTGGATTCG 60.028 50.000 0.00 0.00 0.00 3.34
4007 15142 1.003118 TCCTGGTCAACTTGGATTCGG 59.997 52.381 0.00 0.00 0.00 4.30
4008 15143 1.453155 CTGGTCAACTTGGATTCGGG 58.547 55.000 0.00 0.00 0.00 5.14
4009 15144 0.037590 TGGTCAACTTGGATTCGGGG 59.962 55.000 0.00 0.00 0.00 5.73
4010 15145 0.037734 GGTCAACTTGGATTCGGGGT 59.962 55.000 0.00 0.00 0.00 4.95
4011 15146 1.165270 GTCAACTTGGATTCGGGGTG 58.835 55.000 0.00 0.00 0.00 4.61
4012 15147 0.037590 TCAACTTGGATTCGGGGTGG 59.962 55.000 0.00 0.00 0.00 4.61
4013 15148 1.304134 AACTTGGATTCGGGGTGGC 60.304 57.895 0.00 0.00 0.00 5.01
4014 15149 2.440247 CTTGGATTCGGGGTGGCC 60.440 66.667 0.00 0.00 0.00 5.36
4015 15150 2.938798 TTGGATTCGGGGTGGCCT 60.939 61.111 3.32 0.00 0.00 5.19
4016 15151 2.499303 CTTGGATTCGGGGTGGCCTT 62.499 60.000 3.32 0.00 0.00 4.35
4017 15152 2.124278 GGATTCGGGGTGGCCTTC 60.124 66.667 3.32 0.00 0.00 3.46
4018 15153 2.513897 GATTCGGGGTGGCCTTCG 60.514 66.667 3.32 2.60 0.00 3.79
4019 15154 4.109675 ATTCGGGGTGGCCTTCGG 62.110 66.667 3.32 0.00 0.00 4.30
4025 15160 3.384532 GGTGGCCTTCGGGTCGTA 61.385 66.667 3.32 0.00 44.02 3.43
4026 15161 2.183555 GTGGCCTTCGGGTCGTAG 59.816 66.667 3.32 0.00 44.02 3.51
4499 15634 4.382320 TGCGGGTGCGGTAGAACC 62.382 66.667 0.00 0.00 45.89 3.62
4503 15638 4.913126 GGTGCGGTAGAACCAGAG 57.087 61.111 0.00 0.00 45.91 3.35
4504 15639 1.218316 GGTGCGGTAGAACCAGAGG 59.782 63.158 0.00 0.00 45.91 3.69
4505 15640 1.218316 GTGCGGTAGAACCAGAGGG 59.782 63.158 0.00 0.00 38.47 4.30
4506 15641 1.077805 TGCGGTAGAACCAGAGGGA 59.922 57.895 0.00 0.00 38.47 4.20
4507 15642 0.543410 TGCGGTAGAACCAGAGGGAA 60.543 55.000 0.00 0.00 38.47 3.97
4508 15643 0.831307 GCGGTAGAACCAGAGGGAAT 59.169 55.000 0.00 0.00 38.47 3.01
4509 15644 1.202545 GCGGTAGAACCAGAGGGAATC 60.203 57.143 0.00 0.00 38.47 2.52
4510 15645 2.389715 CGGTAGAACCAGAGGGAATCT 58.610 52.381 0.00 0.00 38.47 2.40
4511 15646 3.563223 CGGTAGAACCAGAGGGAATCTA 58.437 50.000 0.00 0.00 38.47 1.98
4512 15647 3.570550 CGGTAGAACCAGAGGGAATCTAG 59.429 52.174 0.00 0.00 38.47 2.43
4513 15648 4.548669 GGTAGAACCAGAGGGAATCTAGT 58.451 47.826 0.00 0.00 38.42 2.57
4514 15649 4.342665 GGTAGAACCAGAGGGAATCTAGTG 59.657 50.000 0.00 0.00 38.42 2.74
4515 15650 3.379452 AGAACCAGAGGGAATCTAGTGG 58.621 50.000 0.00 0.00 36.10 4.00
4516 15651 2.950990 ACCAGAGGGAATCTAGTGGT 57.049 50.000 0.00 0.00 37.82 4.16
4517 15652 2.472029 ACCAGAGGGAATCTAGTGGTG 58.528 52.381 0.00 0.00 39.91 4.17
4518 15653 1.765314 CCAGAGGGAATCTAGTGGTGG 59.235 57.143 0.00 0.00 36.10 4.61
4519 15654 1.765314 CAGAGGGAATCTAGTGGTGGG 59.235 57.143 0.00 0.00 36.10 4.61
4520 15655 1.366435 AGAGGGAATCTAGTGGTGGGT 59.634 52.381 0.00 0.00 36.10 4.51
4521 15656 2.197465 GAGGGAATCTAGTGGTGGGTT 58.803 52.381 0.00 0.00 0.00 4.11
4522 15657 1.916181 AGGGAATCTAGTGGTGGGTTG 59.084 52.381 0.00 0.00 0.00 3.77
4523 15658 1.633945 GGGAATCTAGTGGTGGGTTGT 59.366 52.381 0.00 0.00 0.00 3.32
4524 15659 2.618045 GGGAATCTAGTGGTGGGTTGTG 60.618 54.545 0.00 0.00 0.00 3.33
4525 15660 2.039879 GGAATCTAGTGGTGGGTTGTGT 59.960 50.000 0.00 0.00 0.00 3.72
4526 15661 3.335579 GAATCTAGTGGTGGGTTGTGTC 58.664 50.000 0.00 0.00 0.00 3.67
4527 15662 1.053424 TCTAGTGGTGGGTTGTGTCC 58.947 55.000 0.00 0.00 0.00 4.02
4528 15663 0.762418 CTAGTGGTGGGTTGTGTCCA 59.238 55.000 0.00 0.00 0.00 4.02
4529 15664 0.762418 TAGTGGTGGGTTGTGTCCAG 59.238 55.000 0.00 0.00 34.56 3.86
4530 15665 0.986019 AGTGGTGGGTTGTGTCCAGA 60.986 55.000 0.00 0.00 34.56 3.86
4531 15666 0.818040 GTGGTGGGTTGTGTCCAGAC 60.818 60.000 0.00 0.00 34.56 3.51
4532 15667 1.228154 GGTGGGTTGTGTCCAGACC 60.228 63.158 0.00 0.00 34.56 3.85
4533 15668 1.597027 GTGGGTTGTGTCCAGACCG 60.597 63.158 0.00 0.00 34.56 4.79
4534 15669 2.067605 TGGGTTGTGTCCAGACCGT 61.068 57.895 0.00 0.00 34.22 4.83
4535 15670 1.597027 GGGTTGTGTCCAGACCGTG 60.597 63.158 0.00 0.00 34.22 4.94
4536 15671 1.145377 GGTTGTGTCCAGACCGTGT 59.855 57.895 0.00 0.00 0.00 4.49
4537 15672 0.463116 GGTTGTGTCCAGACCGTGTT 60.463 55.000 0.00 0.00 0.00 3.32
4538 15673 0.935196 GTTGTGTCCAGACCGTGTTC 59.065 55.000 0.00 0.00 0.00 3.18
4539 15674 0.537653 TTGTGTCCAGACCGTGTTCA 59.462 50.000 0.00 0.00 0.00 3.18
4551 15686 0.518636 CGTGTTCAGGGATGTTGCTG 59.481 55.000 0.00 0.00 0.00 4.41
4628 17612 5.186198 GCAAAAGTCAAAGGGCTAGATCTA 58.814 41.667 1.69 1.69 0.00 1.98
4648 17632 0.613260 CTGGTCAACTGGGATTCGGA 59.387 55.000 0.00 0.00 0.00 4.55
4688 20068 0.896923 ATGCCACCAAAACATCGCAT 59.103 45.000 0.00 0.00 32.32 4.73
4708 20088 1.381928 GGCTCCTGATGCATGTGTGG 61.382 60.000 2.46 0.35 0.00 4.17
4716 20096 3.749226 TGATGCATGTGTGGAAGTGTTA 58.251 40.909 2.46 0.00 0.00 2.41
4756 20136 3.884704 TTGGGGCTCCATGGTGTGC 62.885 63.158 5.88 14.24 43.63 4.57
4976 20359 3.972638 AGCATCCATATGACAGAGAACCT 59.027 43.478 3.65 0.00 34.84 3.50
5124 20726 2.349755 GAACCCGGGCTGTAGCAA 59.650 61.111 24.08 0.00 44.36 3.91
5165 20767 0.964860 CACCGCATGACATTTCCCCA 60.965 55.000 0.00 0.00 0.00 4.96
5295 21009 1.552337 TGGCTCAAGGAAGCACTAGAG 59.448 52.381 0.00 0.00 44.35 2.43
5308 21094 5.331876 AGCACTAGAGTACATTTCCTCAC 57.668 43.478 0.00 0.00 0.00 3.51
5399 21185 5.817296 ACACACAATATGCTCGATATGTGTT 59.183 36.000 6.62 0.00 37.27 3.32
5400 21186 6.131389 CACACAATATGCTCGATATGTGTTG 58.869 40.000 6.62 5.58 37.27 3.33
5401 21187 5.142265 CACAATATGCTCGATATGTGTTGC 58.858 41.667 0.00 0.00 29.93 4.17
5402 21188 4.214119 ACAATATGCTCGATATGTGTTGCC 59.786 41.667 0.00 0.00 0.00 4.52
5403 21189 1.597742 ATGCTCGATATGTGTTGCCC 58.402 50.000 0.00 0.00 0.00 5.36
5404 21190 0.541392 TGCTCGATATGTGTTGCCCT 59.459 50.000 0.00 0.00 0.00 5.19
5405 21191 1.221414 GCTCGATATGTGTTGCCCTC 58.779 55.000 0.00 0.00 0.00 4.30
5406 21192 1.491670 CTCGATATGTGTTGCCCTCG 58.508 55.000 0.00 0.00 0.00 4.63
5407 21193 0.104120 TCGATATGTGTTGCCCTCGG 59.896 55.000 0.00 0.00 0.00 4.63
5418 21204 2.765807 CCCTCGGCAGGATCTGGT 60.766 66.667 4.77 0.00 43.65 4.00
5419 21205 1.457643 CCCTCGGCAGGATCTGGTA 60.458 63.158 4.77 0.00 43.65 3.25
5420 21206 1.467678 CCCTCGGCAGGATCTGGTAG 61.468 65.000 4.77 0.00 43.65 3.18
5421 21207 0.468214 CCTCGGCAGGATCTGGTAGA 60.468 60.000 0.00 0.00 43.65 2.59
5422 21208 1.626686 CTCGGCAGGATCTGGTAGAT 58.373 55.000 0.00 0.00 37.73 1.98
5423 21209 2.555448 CCTCGGCAGGATCTGGTAGATA 60.555 54.545 0.00 0.00 43.65 1.98
5424 21210 2.752354 CTCGGCAGGATCTGGTAGATAG 59.248 54.545 0.00 0.00 34.53 2.08
5425 21211 2.108425 TCGGCAGGATCTGGTAGATAGT 59.892 50.000 0.00 0.00 34.53 2.12
5426 21212 2.490115 CGGCAGGATCTGGTAGATAGTC 59.510 54.545 0.00 0.00 34.53 2.59
5427 21213 3.501349 GGCAGGATCTGGTAGATAGTCA 58.499 50.000 0.00 0.00 34.53 3.41
5428 21214 3.509575 GGCAGGATCTGGTAGATAGTCAG 59.490 52.174 0.00 0.00 34.53 3.51
5429 21215 3.509575 GCAGGATCTGGTAGATAGTCAGG 59.490 52.174 0.00 0.00 34.53 3.86
5430 21216 3.509575 CAGGATCTGGTAGATAGTCAGGC 59.490 52.174 0.00 0.00 34.53 4.85
5431 21217 3.401002 AGGATCTGGTAGATAGTCAGGCT 59.599 47.826 0.00 0.00 34.53 4.58
5432 21218 4.140805 AGGATCTGGTAGATAGTCAGGCTT 60.141 45.833 0.00 0.00 34.53 4.35
5433 21219 4.219725 GGATCTGGTAGATAGTCAGGCTTC 59.780 50.000 0.00 0.00 34.53 3.86
5434 21220 4.528076 TCTGGTAGATAGTCAGGCTTCT 57.472 45.455 0.00 0.00 0.00 2.85
5435 21221 4.873010 TCTGGTAGATAGTCAGGCTTCTT 58.127 43.478 0.00 0.00 0.00 2.52
5436 21222 6.014771 TCTGGTAGATAGTCAGGCTTCTTA 57.985 41.667 0.00 0.00 0.00 2.10
5437 21223 6.065374 TCTGGTAGATAGTCAGGCTTCTTAG 58.935 44.000 0.00 0.00 0.00 2.18
5438 21224 8.663305 ATCTGGTAGATAGTCAGGCTTCTTAGC 61.663 44.444 0.00 0.00 38.80 3.09
5453 21239 7.803079 GCTTCTTAGCCTTTTTCATTTGTAG 57.197 36.000 0.00 0.00 41.74 2.74
5454 21240 7.593825 GCTTCTTAGCCTTTTTCATTTGTAGA 58.406 34.615 0.00 0.00 41.74 2.59
5455 21241 8.246871 GCTTCTTAGCCTTTTTCATTTGTAGAT 58.753 33.333 0.00 0.00 41.74 1.98
5456 21242 9.565213 CTTCTTAGCCTTTTTCATTTGTAGATG 57.435 33.333 0.00 0.00 0.00 2.90
5457 21243 8.635765 TCTTAGCCTTTTTCATTTGTAGATGT 57.364 30.769 0.00 0.00 0.00 3.06
5458 21244 8.730680 TCTTAGCCTTTTTCATTTGTAGATGTC 58.269 33.333 0.00 0.00 0.00 3.06
5459 21245 8.635765 TTAGCCTTTTTCATTTGTAGATGTCT 57.364 30.769 0.00 0.00 0.00 3.41
5460 21246 6.917533 AGCCTTTTTCATTTGTAGATGTCTG 58.082 36.000 0.00 0.00 0.00 3.51
5461 21247 6.491403 AGCCTTTTTCATTTGTAGATGTCTGT 59.509 34.615 0.00 0.00 0.00 3.41
5462 21248 7.014615 AGCCTTTTTCATTTGTAGATGTCTGTT 59.985 33.333 0.00 0.00 0.00 3.16
5463 21249 7.653311 GCCTTTTTCATTTGTAGATGTCTGTTT 59.347 33.333 0.00 0.00 0.00 2.83
5464 21250 9.533253 CCTTTTTCATTTGTAGATGTCTGTTTT 57.467 29.630 0.00 0.00 0.00 2.43
5691 21477 1.077265 CTGTTGGGCCTTCCATGGT 59.923 57.895 12.58 0.00 46.52 3.55
5780 21567 0.107831 TTTCCCGACCAACACTCTGG 59.892 55.000 0.00 0.00 42.68 3.86
5908 21698 5.799827 ATTTAGCCAGCCACAACTTTAAA 57.200 34.783 0.00 0.00 0.00 1.52
6265 22238 6.735130 ACTACAGTAGCAAAATTCCAACAAC 58.265 36.000 7.57 0.00 0.00 3.32
6785 23062 6.611613 TTGTAGTGATGAGATTCCTTGTCT 57.388 37.500 0.00 0.00 0.00 3.41
6827 23111 7.202130 CCCTCACCCAGATATAAGAAATCTTGA 60.202 40.741 5.93 0.00 37.40 3.02
7253 23579 6.959639 AAAGGCTCACAAAATAGTGAAAGA 57.040 33.333 0.00 0.00 46.90 2.52
7433 23759 4.588899 TGGCAGCAACTATTACTTCACAT 58.411 39.130 0.00 0.00 0.00 3.21
7675 24005 6.663523 CCATTAGTTTTGGATGGTTAAGGTCT 59.336 38.462 0.00 0.00 36.43 3.85
7988 26058 9.046296 GTCAACATATCCCTATTGTTGTTCTAG 57.954 37.037 12.98 0.00 40.26 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.324614 TGAGGCACACAATCCATCGT 59.675 50.000 0.00 0.00 0.00 3.73
234 237 1.815003 CCTGTCTCCAATTCTTGCACC 59.185 52.381 0.00 0.00 0.00 5.01
343 346 5.643664 TGTTTTTAGCACATGATCATCAGC 58.356 37.500 17.19 17.19 0.00 4.26
362 365 7.527568 TCGAACCAACCCTATTTAATTGTTT 57.472 32.000 0.00 0.00 0.00 2.83
372 375 4.899457 TCATAGTCATCGAACCAACCCTAT 59.101 41.667 0.00 0.00 0.00 2.57
421 424 9.731819 TCATCATACAACTTCTACTCGTTATTC 57.268 33.333 0.00 0.00 0.00 1.75
471 474 1.314730 TGCTCGCATCATGCATCATT 58.685 45.000 11.00 0.00 45.36 2.57
509 512 6.071447 CCAATTCATGTTCATTTCACCCACTA 60.071 38.462 0.00 0.00 0.00 2.74
529 532 5.163322 TGTTTGCCTTCACTTCAATCCAATT 60.163 36.000 0.00 0.00 0.00 2.32
556 559 3.052455 ACTTTCGACATGCACCACATA 57.948 42.857 0.00 0.00 36.64 2.29
756 760 0.408309 AAAGAGGGTGGTTTAGGGGC 59.592 55.000 0.00 0.00 0.00 5.80
815 821 0.110238 CCAAAAGACATCCACGCGTG 60.110 55.000 31.77 31.77 0.00 5.34
827 833 0.466555 CACCAACCGGGACCAAAAGA 60.467 55.000 6.32 0.00 41.15 2.52
858 864 1.068352 AGGCAGGAGGACCTTTGGTT 61.068 55.000 0.00 0.00 45.36 3.67
867 874 3.333219 CAAGCCCAGGCAGGAGGA 61.333 66.667 12.03 0.00 44.88 3.71
952 959 4.097135 GGGACTAGAGGGTCGTTTACTAAC 59.903 50.000 0.00 0.00 37.12 2.34
958 965 0.969409 CCGGGACTAGAGGGTCGTTT 60.969 60.000 0.00 0.00 37.12 3.60
1022 1029 9.886132 GAGATTACACCACTAATAGAAAAAGGA 57.114 33.333 0.00 0.00 0.00 3.36
1033 1040 3.007074 TGCAACCGAGATTACACCACTAA 59.993 43.478 0.00 0.00 0.00 2.24
1042 1049 2.419574 GGCCTAGTTGCAACCGAGATTA 60.420 50.000 25.62 9.63 0.00 1.75
1076 1083 1.072015 GGCTGATCCCTCTCCATGAAG 59.928 57.143 0.00 0.00 0.00 3.02
1176 1194 1.448540 GGACGTCGTCGGGTAGAGA 60.449 63.158 18.61 0.00 41.85 3.10
1313 1338 4.409218 GAGCGACGGTGCGGTACA 62.409 66.667 3.31 0.00 42.62 2.90
1330 1355 0.320421 ACAATCCACCGAGAACCACG 60.320 55.000 0.00 0.00 0.00 4.94
1511 1536 3.119291 CTCAACATCGTATGCAGTCCTC 58.881 50.000 0.00 0.00 0.00 3.71
1512 1537 2.497675 ACTCAACATCGTATGCAGTCCT 59.502 45.455 0.00 0.00 0.00 3.85
1552 1577 1.577328 CGCCAAGAACGATGCAAGGT 61.577 55.000 0.00 0.00 0.00 3.50
1664 1689 3.003173 AGCTCTAGGCCGTGGCAA 61.003 61.111 13.76 0.00 44.11 4.52
1931 1962 2.224137 CGGAGAGAGCAATGCTGGATTA 60.224 50.000 14.48 0.00 39.88 1.75
1955 1989 7.605691 AGAGAAACATCTGTGAGGTTATTGAAG 59.394 37.037 0.00 0.00 35.48 3.02
2104 2138 2.418368 ACAGCAGGTTTGACTTGTCA 57.582 45.000 0.00 0.00 0.00 3.58
2105 2139 2.223572 CCAACAGCAGGTTTGACTTGTC 60.224 50.000 0.00 0.00 37.72 3.18
2106 2140 1.750778 CCAACAGCAGGTTTGACTTGT 59.249 47.619 0.00 0.00 37.72 3.16
2107 2141 1.536709 GCCAACAGCAGGTTTGACTTG 60.537 52.381 0.00 0.00 42.97 3.16
2108 2142 0.746659 GCCAACAGCAGGTTTGACTT 59.253 50.000 0.00 0.00 42.97 3.01
2109 2143 1.447317 CGCCAACAGCAGGTTTGACT 61.447 55.000 0.00 0.00 44.04 3.41
2110 2144 1.008538 CGCCAACAGCAGGTTTGAC 60.009 57.895 0.00 0.00 44.04 3.18
2111 2145 2.844451 GCGCCAACAGCAGGTTTGA 61.844 57.895 0.00 0.00 44.04 2.69
2112 2146 2.355009 GCGCCAACAGCAGGTTTG 60.355 61.111 0.00 0.00 44.04 2.93
2113 2147 3.605664 GGCGCCAACAGCAGGTTT 61.606 61.111 24.80 0.00 44.04 3.27
2228 2263 0.693049 AAAGGCTGGTAGTGTGAGGG 59.307 55.000 0.00 0.00 0.00 4.30
2238 2273 4.445557 AGAAAGAGAAGAAAAGGCTGGT 57.554 40.909 0.00 0.00 0.00 4.00
2241 2276 7.917003 AGAGAATAGAAAGAGAAGAAAAGGCT 58.083 34.615 0.00 0.00 0.00 4.58
2323 2360 3.537206 GAGAAGTGTGGCCGCTGGT 62.537 63.158 18.96 1.46 0.00 4.00
2336 2373 2.012673 GCATGGCTGTTAGTGGAGAAG 58.987 52.381 0.00 0.00 0.00 2.85
2373 2410 2.125512 GAGCTAGTGGCCGGTGTG 60.126 66.667 1.90 0.00 43.05 3.82
2374 2411 2.603473 TGAGCTAGTGGCCGGTGT 60.603 61.111 1.90 0.00 43.05 4.16
2375 2412 2.185350 CTGAGCTAGTGGCCGGTG 59.815 66.667 1.90 0.00 43.05 4.94
2376 2413 2.037367 TCTGAGCTAGTGGCCGGT 59.963 61.111 1.90 0.00 43.05 5.28
2377 2414 2.496817 GTCTGAGCTAGTGGCCGG 59.503 66.667 0.00 0.00 43.05 6.13
2378 2415 2.103143 CGTCTGAGCTAGTGGCCG 59.897 66.667 0.00 0.00 43.05 6.13
2379 2416 1.139947 GTCGTCTGAGCTAGTGGCC 59.860 63.158 0.00 0.00 43.05 5.36
2380 2417 1.139947 GGTCGTCTGAGCTAGTGGC 59.860 63.158 0.00 0.00 39.53 5.01
2387 2424 2.125753 CAGCCAGGTCGTCTGAGC 60.126 66.667 9.44 10.32 46.18 4.26
2388 2425 1.315981 TAGCAGCCAGGTCGTCTGAG 61.316 60.000 9.44 2.77 46.18 3.35
2389 2426 0.898326 TTAGCAGCCAGGTCGTCTGA 60.898 55.000 9.44 0.00 46.18 3.27
2390 2427 0.737715 GTTAGCAGCCAGGTCGTCTG 60.738 60.000 0.00 2.39 43.00 3.51
2391 2428 0.900647 AGTTAGCAGCCAGGTCGTCT 60.901 55.000 0.00 0.00 0.00 4.18
2392 2429 0.737715 CAGTTAGCAGCCAGGTCGTC 60.738 60.000 0.00 0.00 0.00 4.20
2393 2430 1.185618 TCAGTTAGCAGCCAGGTCGT 61.186 55.000 0.00 0.00 0.00 4.34
2394 2431 0.176680 ATCAGTTAGCAGCCAGGTCG 59.823 55.000 0.00 0.00 0.00 4.79
2395 2432 2.284190 GAATCAGTTAGCAGCCAGGTC 58.716 52.381 0.00 0.00 0.00 3.85
2396 2433 1.065126 GGAATCAGTTAGCAGCCAGGT 60.065 52.381 0.00 0.00 0.00 4.00
2397 2434 1.211457 AGGAATCAGTTAGCAGCCAGG 59.789 52.381 0.00 0.00 0.00 4.45
2398 2435 2.706339 AGGAATCAGTTAGCAGCCAG 57.294 50.000 0.00 0.00 0.00 4.85
2399 2436 3.969976 AGATAGGAATCAGTTAGCAGCCA 59.030 43.478 0.00 0.00 34.28 4.75
2400 2437 4.615588 AGATAGGAATCAGTTAGCAGCC 57.384 45.455 0.00 0.00 34.28 4.85
2401 2438 6.090483 TGTAGATAGGAATCAGTTAGCAGC 57.910 41.667 0.00 0.00 34.28 5.25
2402 2439 6.589523 GCATGTAGATAGGAATCAGTTAGCAG 59.410 42.308 0.00 0.00 34.28 4.24
2403 2440 6.041979 TGCATGTAGATAGGAATCAGTTAGCA 59.958 38.462 0.00 0.00 34.28 3.49
2404 2441 6.367422 GTGCATGTAGATAGGAATCAGTTAGC 59.633 42.308 0.00 0.00 34.28 3.09
2405 2442 6.870965 GGTGCATGTAGATAGGAATCAGTTAG 59.129 42.308 0.00 0.00 34.28 2.34
2406 2443 6.326323 TGGTGCATGTAGATAGGAATCAGTTA 59.674 38.462 0.00 0.00 34.28 2.24
2407 2444 5.130975 TGGTGCATGTAGATAGGAATCAGTT 59.869 40.000 0.00 0.00 34.28 3.16
2408 2445 4.655649 TGGTGCATGTAGATAGGAATCAGT 59.344 41.667 0.00 0.00 34.28 3.41
2409 2446 5.219343 TGGTGCATGTAGATAGGAATCAG 57.781 43.478 0.00 0.00 34.28 2.90
2410 2447 4.655649 ACTGGTGCATGTAGATAGGAATCA 59.344 41.667 0.00 0.00 34.28 2.57
2411 2448 5.011533 AGACTGGTGCATGTAGATAGGAATC 59.988 44.000 0.00 0.00 0.00 2.52
2412 2449 4.904251 AGACTGGTGCATGTAGATAGGAAT 59.096 41.667 0.00 0.00 0.00 3.01
2413 2450 4.290093 AGACTGGTGCATGTAGATAGGAA 58.710 43.478 0.00 0.00 0.00 3.36
2414 2451 3.891977 GAGACTGGTGCATGTAGATAGGA 59.108 47.826 0.00 0.00 0.00 2.94
2415 2452 3.304996 CGAGACTGGTGCATGTAGATAGG 60.305 52.174 0.00 0.00 0.00 2.57
2419 2456 0.173481 GCGAGACTGGTGCATGTAGA 59.827 55.000 0.00 0.00 0.00 2.59
2440 2477 2.045708 TTATGGGGTGCAGCGCAAG 61.046 57.895 34.59 2.01 41.47 4.01
2441 2478 2.034843 TTATGGGGTGCAGCGCAA 59.965 55.556 34.59 22.11 41.47 4.85
2443 2480 3.876198 CGTTATGGGGTGCAGCGC 61.876 66.667 24.45 24.45 0.00 5.92
2444 2481 3.202001 CCGTTATGGGGTGCAGCG 61.202 66.667 10.24 0.00 0.00 5.18
2445 2482 3.518068 GCCGTTATGGGGTGCAGC 61.518 66.667 7.55 7.55 38.63 5.25
2446 2483 2.828549 GGCCGTTATGGGGTGCAG 60.829 66.667 0.00 0.00 38.63 4.41
2449 2486 2.043980 GTGTGGCCGTTATGGGGTG 61.044 63.158 0.00 0.00 38.63 4.61
2451 2488 1.077068 ATGTGTGGCCGTTATGGGG 60.077 57.895 0.00 0.00 38.63 4.96
2453 2490 0.732571 GTCATGTGTGGCCGTTATGG 59.267 55.000 0.00 0.00 42.50 2.74
2454 2491 0.732571 GGTCATGTGTGGCCGTTATG 59.267 55.000 0.00 0.16 40.95 1.90
2455 2492 3.168773 GGTCATGTGTGGCCGTTAT 57.831 52.632 0.00 0.00 40.95 1.89
2456 2493 4.705746 GGTCATGTGTGGCCGTTA 57.294 55.556 0.00 0.00 40.95 3.18
2464 2505 1.075482 CCCTGGCAAGGTCATGTGT 59.925 57.895 6.34 0.00 42.74 3.72
2485 2526 0.748367 TTAGTTGTGTGGGCGTGCAA 60.748 50.000 0.00 0.00 0.00 4.08
2486 2527 1.153147 TTAGTTGTGTGGGCGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
2498 2539 5.869753 AGCTGCATGAAACTAGTTAGTTG 57.130 39.130 8.92 7.76 45.17 3.16
2504 2545 5.765182 AGTTTGTTAGCTGCATGAAACTAGT 59.235 36.000 13.77 0.00 33.10 2.57
2511 2552 4.071423 TGCTTAGTTTGTTAGCTGCATGA 58.929 39.130 1.02 0.00 35.93 3.07
2531 2572 1.547372 AGTTGGAGCCATGTGATTTGC 59.453 47.619 0.00 0.00 0.00 3.68
2540 2581 2.887151 AAGCACTTAGTTGGAGCCAT 57.113 45.000 0.00 0.00 0.00 4.40
2547 2588 2.000447 GACCGGCTAAGCACTTAGTTG 59.000 52.381 16.62 10.33 43.28 3.16
2548 2589 1.066358 GGACCGGCTAAGCACTTAGTT 60.066 52.381 16.62 2.20 43.28 2.24
2549 2590 0.535797 GGACCGGCTAAGCACTTAGT 59.464 55.000 16.62 0.45 43.28 2.24
2550 2591 0.527817 CGGACCGGCTAAGCACTTAG 60.528 60.000 5.81 12.19 43.98 2.18
2551 2592 1.514087 CGGACCGGCTAAGCACTTA 59.486 57.895 5.81 0.00 0.00 2.24
2552 2593 2.264794 CGGACCGGCTAAGCACTT 59.735 61.111 5.81 0.00 0.00 3.16
2553 2594 3.771160 CCGGACCGGCTAAGCACT 61.771 66.667 22.37 0.00 41.17 4.40
2564 2605 2.288025 TAGTGGTTGGAGCCGGACC 61.288 63.158 5.05 8.64 0.00 4.46
2565 2606 1.079336 GTAGTGGTTGGAGCCGGAC 60.079 63.158 5.05 0.00 0.00 4.79
2566 2607 2.288025 GGTAGTGGTTGGAGCCGGA 61.288 63.158 5.05 0.00 0.00 5.14
2567 2608 2.267961 GGTAGTGGTTGGAGCCGG 59.732 66.667 0.00 0.00 0.00 6.13
2568 2609 1.079127 CTGGTAGTGGTTGGAGCCG 60.079 63.158 0.00 0.00 0.00 5.52
2569 2610 0.690762 TTCTGGTAGTGGTTGGAGCC 59.309 55.000 0.00 0.00 0.00 4.70
2570 2611 2.789409 ATTCTGGTAGTGGTTGGAGC 57.211 50.000 0.00 0.00 0.00 4.70
2571 2612 6.180472 ACATTAATTCTGGTAGTGGTTGGAG 58.820 40.000 0.00 0.00 0.00 3.86
2572 2613 6.134535 ACATTAATTCTGGTAGTGGTTGGA 57.865 37.500 0.00 0.00 0.00 3.53
2573 2614 7.110155 ACTACATTAATTCTGGTAGTGGTTGG 58.890 38.462 12.94 0.00 43.37 3.77
2574 2615 8.450964 CAACTACATTAATTCTGGTAGTGGTTG 58.549 37.037 13.95 12.81 44.02 3.77
2577 2618 6.038271 GGCAACTACATTAATTCTGGTAGTGG 59.962 42.308 13.95 12.62 44.02 4.00
2878 3162 6.326064 TCCCTTTTTCCTGTTGATTTCAATGA 59.674 34.615 0.00 0.00 38.24 2.57
2950 3241 1.134788 CCTTTGGTAGCTCGTGGTAGG 60.135 57.143 0.00 0.00 0.00 3.18
3002 3293 1.593006 GTTTCAGATGTATGCCGACGG 59.407 52.381 10.29 10.29 0.00 4.79
3003 3294 2.540515 AGTTTCAGATGTATGCCGACG 58.459 47.619 0.00 0.00 0.00 5.12
3004 3295 4.084328 GCATAGTTTCAGATGTATGCCGAC 60.084 45.833 2.40 0.00 41.21 4.79
3005 3296 4.058124 GCATAGTTTCAGATGTATGCCGA 58.942 43.478 2.40 0.00 41.21 5.54
3006 3297 4.395581 GCATAGTTTCAGATGTATGCCG 57.604 45.455 2.40 0.00 41.21 5.69
3008 3299 5.119279 CGTAGGCATAGTTTCAGATGTATGC 59.881 44.000 4.88 4.88 44.65 3.14
3009 3300 6.363626 GTCGTAGGCATAGTTTCAGATGTATG 59.636 42.308 0.00 0.00 0.00 2.39
3010 3301 6.265649 AGTCGTAGGCATAGTTTCAGATGTAT 59.734 38.462 0.00 0.00 0.00 2.29
3011 3302 5.593095 AGTCGTAGGCATAGTTTCAGATGTA 59.407 40.000 0.00 0.00 0.00 2.29
3012 3303 4.402793 AGTCGTAGGCATAGTTTCAGATGT 59.597 41.667 0.00 0.00 0.00 3.06
3013 3304 4.938080 AGTCGTAGGCATAGTTTCAGATG 58.062 43.478 0.00 0.00 0.00 2.90
3014 3305 6.710597 TTAGTCGTAGGCATAGTTTCAGAT 57.289 37.500 0.00 0.00 0.00 2.90
3015 3306 5.450137 GCTTAGTCGTAGGCATAGTTTCAGA 60.450 44.000 0.00 0.00 31.54 3.27
3016 3307 4.740695 GCTTAGTCGTAGGCATAGTTTCAG 59.259 45.833 0.00 0.00 31.54 3.02
3017 3308 4.441079 GGCTTAGTCGTAGGCATAGTTTCA 60.441 45.833 0.00 0.00 38.03 2.69
3018 3309 4.049869 GGCTTAGTCGTAGGCATAGTTTC 58.950 47.826 0.00 0.00 38.03 2.78
3019 3310 3.490419 CGGCTTAGTCGTAGGCATAGTTT 60.490 47.826 0.00 0.00 38.02 2.66
3020 3311 2.034305 CGGCTTAGTCGTAGGCATAGTT 59.966 50.000 0.00 0.00 38.02 2.24
3021 3312 1.607628 CGGCTTAGTCGTAGGCATAGT 59.392 52.381 0.00 0.00 38.02 2.12
3120 4942 1.303309 GCATATCTCTGCCACACCAC 58.697 55.000 0.00 0.00 36.10 4.16
3204 5026 0.249615 ACAGATCGATGACATGGCGG 60.250 55.000 0.54 0.00 0.00 6.13
3225 5047 4.228097 CATAGCTGCGCACACGGC 62.228 66.667 5.66 9.00 42.55 5.68
3252 5074 4.891168 TGATCTGAGGTATGCTTACGGTAA 59.109 41.667 0.00 0.00 0.00 2.85
3260 5082 2.158986 GCACACTGATCTGAGGTATGCT 60.159 50.000 6.60 0.00 0.00 3.79
3314 5136 1.134640 TGCCACACCACATACCGTATC 60.135 52.381 0.00 0.00 0.00 2.24
3315 5137 0.906066 TGCCACACCACATACCGTAT 59.094 50.000 0.00 0.00 0.00 3.06
3317 5139 1.003839 CTGCCACACCACATACCGT 60.004 57.895 0.00 0.00 0.00 4.83
3322 5144 2.747467 GCATATCTCTGCCACACCACAT 60.747 50.000 0.00 0.00 36.10 3.21
3471 5561 1.737735 CTGCGCACACCGATCTGAA 60.738 57.895 5.66 0.00 40.02 3.02
3568 5768 7.177744 GGGGTATGATTTTTGTTTAGACAAGGA 59.822 37.037 0.00 0.00 45.80 3.36
3680 5880 3.221222 CCGAAGGCCACCCTCTAG 58.779 66.667 5.01 0.00 46.14 2.43
3908 15043 1.432270 GCGACAAGTCTGCCCATAGC 61.432 60.000 0.00 0.00 44.14 2.97
3909 15044 0.108186 TGCGACAAGTCTGCCCATAG 60.108 55.000 12.12 0.00 0.00 2.23
3910 15045 0.323302 TTGCGACAAGTCTGCCCATA 59.677 50.000 12.12 0.00 0.00 2.74
3911 15046 1.073025 TTGCGACAAGTCTGCCCAT 59.927 52.632 12.12 0.00 0.00 4.00
3912 15047 1.891919 GTTGCGACAAGTCTGCCCA 60.892 57.895 0.00 0.71 0.00 5.36
3913 15048 2.617274 GGTTGCGACAAGTCTGCCC 61.617 63.158 6.39 5.91 0.00 5.36
3914 15049 1.845809 CTGGTTGCGACAAGTCTGCC 61.846 60.000 6.39 4.35 0.00 4.85
3915 15050 1.571460 CTGGTTGCGACAAGTCTGC 59.429 57.895 6.39 9.12 0.00 4.26
3916 15051 0.532862 ACCTGGTTGCGACAAGTCTG 60.533 55.000 7.74 0.00 0.00 3.51
3917 15052 0.532862 CACCTGGTTGCGACAAGTCT 60.533 55.000 7.74 0.00 0.00 3.24
3918 15053 1.507141 CCACCTGGTTGCGACAAGTC 61.507 60.000 7.74 0.00 0.00 3.01
3919 15054 1.525995 CCACCTGGTTGCGACAAGT 60.526 57.895 7.74 0.00 0.00 3.16
3920 15055 0.817634 TTCCACCTGGTTGCGACAAG 60.818 55.000 6.39 3.57 36.34 3.16
3921 15056 0.817634 CTTCCACCTGGTTGCGACAA 60.818 55.000 6.39 0.00 36.34 3.18
3922 15057 1.227823 CTTCCACCTGGTTGCGACA 60.228 57.895 6.39 0.00 36.34 4.35
3923 15058 0.951040 CTCTTCCACCTGGTTGCGAC 60.951 60.000 0.00 0.00 36.34 5.19
3924 15059 1.118965 TCTCTTCCACCTGGTTGCGA 61.119 55.000 0.00 0.00 36.34 5.10
3925 15060 0.951040 GTCTCTTCCACCTGGTTGCG 60.951 60.000 0.00 0.00 36.34 4.85
3926 15061 0.606673 GGTCTCTTCCACCTGGTTGC 60.607 60.000 0.00 0.00 36.34 4.17
3927 15062 0.764890 TGGTCTCTTCCACCTGGTTG 59.235 55.000 0.00 0.00 34.66 3.77
3928 15063 3.257627 TGGTCTCTTCCACCTGGTT 57.742 52.632 0.00 0.00 34.66 3.67
3943 15078 0.818040 GACGGGCTTTGACAAGTGGT 60.818 55.000 0.00 0.00 31.86 4.16
3944 15079 1.515521 GGACGGGCTTTGACAAGTGG 61.516 60.000 0.00 0.00 31.86 4.00
3945 15080 1.841663 CGGACGGGCTTTGACAAGTG 61.842 60.000 0.00 0.00 31.86 3.16
3946 15081 1.597027 CGGACGGGCTTTGACAAGT 60.597 57.895 0.00 0.00 31.86 3.16
3947 15082 2.325082 CCGGACGGGCTTTGACAAG 61.325 63.158 0.00 0.00 0.00 3.16
3948 15083 2.281208 CCGGACGGGCTTTGACAA 60.281 61.111 0.00 0.00 0.00 3.18
3957 15092 1.448922 TTTGACTTTTGCCGGACGGG 61.449 55.000 5.05 3.74 39.58 5.28
3958 15093 0.040425 CTTTGACTTTTGCCGGACGG 60.040 55.000 5.05 6.35 38.57 4.79
3959 15094 0.040425 CCTTTGACTTTTGCCGGACG 60.040 55.000 5.05 0.00 0.00 4.79
3960 15095 0.313987 CCCTTTGACTTTTGCCGGAC 59.686 55.000 5.05 0.00 0.00 4.79
3961 15096 1.460273 GCCCTTTGACTTTTGCCGGA 61.460 55.000 5.05 0.00 0.00 5.14
3962 15097 1.006220 GCCCTTTGACTTTTGCCGG 60.006 57.895 0.00 0.00 0.00 6.13
3963 15098 1.200020 CTAGCCCTTTGACTTTTGCCG 59.800 52.381 0.00 0.00 0.00 5.69
3964 15099 2.514803 TCTAGCCCTTTGACTTTTGCC 58.485 47.619 0.00 0.00 0.00 4.52
3965 15100 4.013050 AGATCTAGCCCTTTGACTTTTGC 58.987 43.478 0.00 0.00 0.00 3.68
3966 15101 4.637977 GGAGATCTAGCCCTTTGACTTTTG 59.362 45.833 0.00 0.00 0.00 2.44
3967 15102 4.538089 AGGAGATCTAGCCCTTTGACTTTT 59.462 41.667 0.00 0.00 0.00 2.27
3968 15103 4.080638 CAGGAGATCTAGCCCTTTGACTTT 60.081 45.833 0.00 0.00 0.00 2.66
3969 15104 3.454082 CAGGAGATCTAGCCCTTTGACTT 59.546 47.826 0.00 0.00 0.00 3.01
3970 15105 3.037549 CAGGAGATCTAGCCCTTTGACT 58.962 50.000 0.00 0.00 0.00 3.41
3971 15106 2.103941 CCAGGAGATCTAGCCCTTTGAC 59.896 54.545 0.00 0.00 0.00 3.18
3972 15107 2.293184 ACCAGGAGATCTAGCCCTTTGA 60.293 50.000 0.00 0.00 0.00 2.69
3973 15108 2.103941 GACCAGGAGATCTAGCCCTTTG 59.896 54.545 0.00 0.00 0.00 2.77
3974 15109 2.293184 TGACCAGGAGATCTAGCCCTTT 60.293 50.000 0.00 0.00 0.00 3.11
3975 15110 1.292242 TGACCAGGAGATCTAGCCCTT 59.708 52.381 0.00 0.00 0.00 3.95
3976 15111 0.937441 TGACCAGGAGATCTAGCCCT 59.063 55.000 0.00 0.00 0.00 5.19
3977 15112 1.414550 GTTGACCAGGAGATCTAGCCC 59.585 57.143 0.00 0.00 0.00 5.19
3978 15113 2.393646 AGTTGACCAGGAGATCTAGCC 58.606 52.381 0.00 0.00 0.00 3.93
3979 15114 3.431486 CCAAGTTGACCAGGAGATCTAGC 60.431 52.174 3.87 0.00 0.00 3.42
3980 15115 4.026744 TCCAAGTTGACCAGGAGATCTAG 58.973 47.826 3.87 0.00 0.00 2.43
3981 15116 4.061131 TCCAAGTTGACCAGGAGATCTA 57.939 45.455 3.87 0.00 0.00 1.98
3982 15117 2.907892 TCCAAGTTGACCAGGAGATCT 58.092 47.619 3.87 0.00 0.00 2.75
3983 15118 3.922171 ATCCAAGTTGACCAGGAGATC 57.078 47.619 3.87 0.00 32.91 2.75
3984 15119 3.369892 CGAATCCAAGTTGACCAGGAGAT 60.370 47.826 3.87 0.00 32.91 2.75
3985 15120 2.028112 CGAATCCAAGTTGACCAGGAGA 60.028 50.000 3.87 0.00 32.91 3.71
3986 15121 2.350522 CGAATCCAAGTTGACCAGGAG 58.649 52.381 3.87 0.00 32.91 3.69
3987 15122 1.003118 CCGAATCCAAGTTGACCAGGA 59.997 52.381 3.87 0.00 34.12 3.86
3988 15123 1.453155 CCGAATCCAAGTTGACCAGG 58.547 55.000 3.87 0.00 0.00 4.45
3989 15124 1.453155 CCCGAATCCAAGTTGACCAG 58.547 55.000 3.87 0.00 0.00 4.00
3990 15125 0.037590 CCCCGAATCCAAGTTGACCA 59.962 55.000 3.87 0.00 0.00 4.02
3991 15126 0.037734 ACCCCGAATCCAAGTTGACC 59.962 55.000 3.87 0.00 0.00 4.02
3992 15127 1.165270 CACCCCGAATCCAAGTTGAC 58.835 55.000 3.87 0.00 0.00 3.18
3993 15128 0.037590 CCACCCCGAATCCAAGTTGA 59.962 55.000 3.87 0.00 0.00 3.18
3994 15129 1.595093 GCCACCCCGAATCCAAGTTG 61.595 60.000 0.00 0.00 0.00 3.16
3995 15130 1.304134 GCCACCCCGAATCCAAGTT 60.304 57.895 0.00 0.00 0.00 2.66
3996 15131 2.355115 GCCACCCCGAATCCAAGT 59.645 61.111 0.00 0.00 0.00 3.16
3997 15132 2.440247 GGCCACCCCGAATCCAAG 60.440 66.667 0.00 0.00 0.00 3.61
3998 15133 2.493273 GAAGGCCACCCCGAATCCAA 62.493 60.000 5.01 0.00 39.21 3.53
3999 15134 2.938798 AAGGCCACCCCGAATCCA 60.939 61.111 5.01 0.00 39.21 3.41
4000 15135 2.124278 GAAGGCCACCCCGAATCC 60.124 66.667 5.01 0.00 39.21 3.01
4001 15136 2.513897 CGAAGGCCACCCCGAATC 60.514 66.667 5.01 0.00 39.21 2.52
4002 15137 4.109675 CCGAAGGCCACCCCGAAT 62.110 66.667 5.01 0.00 46.14 3.34
4476 15611 3.993376 TACCGCACCCGCACGATTC 62.993 63.158 0.00 0.00 38.40 2.52
4477 15612 4.071875 TACCGCACCCGCACGATT 62.072 61.111 0.00 0.00 38.40 3.34
4478 15613 4.508128 CTACCGCACCCGCACGAT 62.508 66.667 0.00 0.00 38.40 3.73
4480 15615 4.728102 TTCTACCGCACCCGCACG 62.728 66.667 0.00 0.00 38.40 5.34
4481 15616 3.116531 GTTCTACCGCACCCGCAC 61.117 66.667 0.00 0.00 38.40 5.34
4482 15617 4.382320 GGTTCTACCGCACCCGCA 62.382 66.667 0.00 0.00 38.40 5.69
4483 15618 4.382320 TGGTTCTACCGCACCCGC 62.382 66.667 0.00 0.00 42.58 6.13
4484 15619 2.125673 CTGGTTCTACCGCACCCG 60.126 66.667 0.00 0.00 42.58 5.28
4485 15620 1.218316 CTCTGGTTCTACCGCACCC 59.782 63.158 0.00 0.00 42.58 4.61
4486 15621 1.218316 CCTCTGGTTCTACCGCACC 59.782 63.158 0.00 0.00 42.58 5.01
4487 15622 1.218316 CCCTCTGGTTCTACCGCAC 59.782 63.158 0.00 0.00 42.58 5.34
4488 15623 0.543410 TTCCCTCTGGTTCTACCGCA 60.543 55.000 0.00 0.00 42.58 5.69
4489 15624 0.831307 ATTCCCTCTGGTTCTACCGC 59.169 55.000 0.00 0.00 42.58 5.68
4490 15625 2.389715 AGATTCCCTCTGGTTCTACCG 58.610 52.381 0.00 0.00 42.58 4.02
4491 15626 4.342665 CACTAGATTCCCTCTGGTTCTACC 59.657 50.000 0.00 0.00 42.56 3.18
4492 15627 4.342665 CCACTAGATTCCCTCTGGTTCTAC 59.657 50.000 0.00 0.00 42.56 2.59
4493 15628 4.016479 ACCACTAGATTCCCTCTGGTTCTA 60.016 45.833 0.00 0.00 42.56 2.10
4494 15629 3.246167 ACCACTAGATTCCCTCTGGTTCT 60.246 47.826 0.00 0.00 42.56 3.01
4495 15630 3.108376 ACCACTAGATTCCCTCTGGTTC 58.892 50.000 0.00 0.00 42.56 3.62
4496 15631 2.840651 CACCACTAGATTCCCTCTGGTT 59.159 50.000 0.00 0.00 42.56 3.67
4497 15632 2.472029 CACCACTAGATTCCCTCTGGT 58.528 52.381 0.00 0.00 45.76 4.00
4498 15633 1.765314 CCACCACTAGATTCCCTCTGG 59.235 57.143 0.00 0.00 38.39 3.86
4499 15634 1.765314 CCCACCACTAGATTCCCTCTG 59.235 57.143 0.00 0.00 35.28 3.35
4500 15635 1.366435 ACCCACCACTAGATTCCCTCT 59.634 52.381 0.00 0.00 38.06 3.69
4501 15636 1.880941 ACCCACCACTAGATTCCCTC 58.119 55.000 0.00 0.00 0.00 4.30
4502 15637 1.916181 CAACCCACCACTAGATTCCCT 59.084 52.381 0.00 0.00 0.00 4.20
4503 15638 1.633945 ACAACCCACCACTAGATTCCC 59.366 52.381 0.00 0.00 0.00 3.97
4504 15639 2.039879 ACACAACCCACCACTAGATTCC 59.960 50.000 0.00 0.00 0.00 3.01
4505 15640 3.335579 GACACAACCCACCACTAGATTC 58.664 50.000 0.00 0.00 0.00 2.52
4506 15641 2.039879 GGACACAACCCACCACTAGATT 59.960 50.000 0.00 0.00 0.00 2.40
4507 15642 1.628846 GGACACAACCCACCACTAGAT 59.371 52.381 0.00 0.00 0.00 1.98
4508 15643 1.053424 GGACACAACCCACCACTAGA 58.947 55.000 0.00 0.00 0.00 2.43
4509 15644 0.762418 TGGACACAACCCACCACTAG 59.238 55.000 0.00 0.00 0.00 2.57
4510 15645 0.762418 CTGGACACAACCCACCACTA 59.238 55.000 0.00 0.00 0.00 2.74
4511 15646 0.986019 TCTGGACACAACCCACCACT 60.986 55.000 0.00 0.00 0.00 4.00
4512 15647 0.818040 GTCTGGACACAACCCACCAC 60.818 60.000 0.00 0.00 0.00 4.16
4513 15648 1.529796 GTCTGGACACAACCCACCA 59.470 57.895 0.00 0.00 0.00 4.17
4514 15649 1.228154 GGTCTGGACACAACCCACC 60.228 63.158 3.10 0.00 0.00 4.61
4515 15650 1.597027 CGGTCTGGACACAACCCAC 60.597 63.158 3.10 0.00 0.00 4.61
4516 15651 2.067605 ACGGTCTGGACACAACCCA 61.068 57.895 3.10 0.00 0.00 4.51
4517 15652 1.597027 CACGGTCTGGACACAACCC 60.597 63.158 3.10 0.00 0.00 4.11
4518 15653 0.463116 AACACGGTCTGGACACAACC 60.463 55.000 3.10 0.00 0.00 3.77
4519 15654 0.935196 GAACACGGTCTGGACACAAC 59.065 55.000 3.10 0.00 0.00 3.32
4520 15655 0.537653 TGAACACGGTCTGGACACAA 59.462 50.000 3.10 0.00 0.00 3.33
4521 15656 0.104120 CTGAACACGGTCTGGACACA 59.896 55.000 3.10 0.00 0.00 3.72
4522 15657 0.600255 CCTGAACACGGTCTGGACAC 60.600 60.000 1.94 0.00 38.55 3.67
4523 15658 1.745890 CCTGAACACGGTCTGGACA 59.254 57.895 1.94 0.00 38.55 4.02
4524 15659 1.004918 CCCTGAACACGGTCTGGAC 60.005 63.158 9.42 0.00 38.55 4.02
4525 15660 0.544357 ATCCCTGAACACGGTCTGGA 60.544 55.000 9.42 3.34 38.55 3.86
4526 15661 0.391661 CATCCCTGAACACGGTCTGG 60.392 60.000 1.17 1.17 36.61 3.86
4527 15662 0.321671 ACATCCCTGAACACGGTCTG 59.678 55.000 0.00 0.00 0.00 3.51
4528 15663 1.056660 AACATCCCTGAACACGGTCT 58.943 50.000 0.00 0.00 0.00 3.85
4529 15664 1.156736 CAACATCCCTGAACACGGTC 58.843 55.000 0.00 0.00 0.00 4.79
4530 15665 0.889186 GCAACATCCCTGAACACGGT 60.889 55.000 0.00 0.00 0.00 4.83
4531 15666 0.606401 AGCAACATCCCTGAACACGG 60.606 55.000 0.00 0.00 0.00 4.94
4532 15667 0.518636 CAGCAACATCCCTGAACACG 59.481 55.000 0.00 0.00 0.00 4.49
4533 15668 1.267806 CACAGCAACATCCCTGAACAC 59.732 52.381 0.00 0.00 33.40 3.32
4534 15669 1.608055 CACAGCAACATCCCTGAACA 58.392 50.000 0.00 0.00 33.40 3.18
4535 15670 0.883833 CCACAGCAACATCCCTGAAC 59.116 55.000 0.00 0.00 33.40 3.18
4536 15671 0.251297 CCCACAGCAACATCCCTGAA 60.251 55.000 0.00 0.00 33.40 3.02
4537 15672 1.379916 CCCACAGCAACATCCCTGA 59.620 57.895 0.00 0.00 33.40 3.86
4538 15673 2.345760 GCCCACAGCAACATCCCTG 61.346 63.158 0.00 0.00 42.97 4.45
4539 15674 2.036256 GCCCACAGCAACATCCCT 59.964 61.111 0.00 0.00 42.97 4.20
4551 15686 3.825160 TTGCGACAGGTCTGCCCAC 62.825 63.158 11.61 0.00 34.66 4.61
4628 17612 0.324943 CCGAATCCCAGTTGACCAGT 59.675 55.000 0.00 0.00 0.00 4.00
4677 20057 0.813184 CAGGAGCCATGCGATGTTTT 59.187 50.000 0.00 0.00 0.00 2.43
4688 20068 0.678684 CACACATGCATCAGGAGCCA 60.679 55.000 0.00 0.00 0.00 4.75
4708 20088 3.001330 GTCTACGCATGCCATAACACTTC 59.999 47.826 13.15 0.00 0.00 3.01
4780 20162 3.114616 CTCCAAGTGACGGCAGCG 61.115 66.667 0.00 0.00 0.00 5.18
4783 20165 3.636231 CCCCTCCAAGTGACGGCA 61.636 66.667 0.00 0.00 0.00 5.69
5124 20726 2.305314 ATCCGGAGTCCTGCCTAGCT 62.305 60.000 11.34 0.00 0.00 3.32
5165 20767 1.843851 TGTTCCTGTGTCTGTCCCTTT 59.156 47.619 0.00 0.00 0.00 3.11
5268 20981 2.435805 TGCTTCCTTGAGCCATAGTAGG 59.564 50.000 0.00 0.00 42.01 3.18
5308 21094 0.255318 ATCCTTGGCAGCCTCTCTTG 59.745 55.000 14.15 0.00 0.00 3.02
5401 21187 1.457643 TACCAGATCCTGCCGAGGG 60.458 63.158 0.00 0.00 40.25 4.30
5402 21188 0.468214 TCTACCAGATCCTGCCGAGG 60.468 60.000 0.00 0.00 41.39 4.63
5403 21189 1.626686 ATCTACCAGATCCTGCCGAG 58.373 55.000 0.00 0.00 25.75 4.63
5404 21190 2.108425 ACTATCTACCAGATCCTGCCGA 59.892 50.000 0.00 0.00 36.20 5.54
5405 21191 2.490115 GACTATCTACCAGATCCTGCCG 59.510 54.545 0.00 0.00 36.20 5.69
5406 21192 3.501349 TGACTATCTACCAGATCCTGCC 58.499 50.000 0.00 0.00 36.20 4.85
5407 21193 3.509575 CCTGACTATCTACCAGATCCTGC 59.490 52.174 0.00 0.00 36.20 4.85
5408 21194 3.509575 GCCTGACTATCTACCAGATCCTG 59.490 52.174 0.00 0.00 36.20 3.86
5409 21195 3.401002 AGCCTGACTATCTACCAGATCCT 59.599 47.826 0.00 0.00 36.20 3.24
5410 21196 3.773560 AGCCTGACTATCTACCAGATCC 58.226 50.000 0.00 0.00 36.20 3.36
5411 21197 5.076873 AGAAGCCTGACTATCTACCAGATC 58.923 45.833 0.00 0.00 36.20 2.75
5412 21198 5.073437 AGAAGCCTGACTATCTACCAGAT 57.927 43.478 0.00 0.00 38.70 2.90
5413 21199 4.528076 AGAAGCCTGACTATCTACCAGA 57.472 45.455 0.00 0.00 0.00 3.86
5414 21200 5.278758 GCTAAGAAGCCTGACTATCTACCAG 60.279 48.000 0.00 0.00 43.40 4.00
5415 21201 4.585162 GCTAAGAAGCCTGACTATCTACCA 59.415 45.833 0.00 0.00 43.40 3.25
5416 21202 5.128992 GCTAAGAAGCCTGACTATCTACC 57.871 47.826 0.00 0.00 43.40 3.18
5430 21216 9.565213 CATCTACAAATGAAAAAGGCTAAGAAG 57.435 33.333 0.00 0.00 0.00 2.85
5431 21217 9.077885 ACATCTACAAATGAAAAAGGCTAAGAA 57.922 29.630 0.00 0.00 0.00 2.52
5432 21218 8.635765 ACATCTACAAATGAAAAAGGCTAAGA 57.364 30.769 0.00 0.00 0.00 2.10
5433 21219 8.734386 AGACATCTACAAATGAAAAAGGCTAAG 58.266 33.333 0.00 0.00 0.00 2.18
5434 21220 8.514594 CAGACATCTACAAATGAAAAAGGCTAA 58.485 33.333 0.00 0.00 0.00 3.09
5435 21221 7.665559 ACAGACATCTACAAATGAAAAAGGCTA 59.334 33.333 0.00 0.00 0.00 3.93
5436 21222 6.491403 ACAGACATCTACAAATGAAAAAGGCT 59.509 34.615 0.00 0.00 0.00 4.58
5437 21223 6.681777 ACAGACATCTACAAATGAAAAAGGC 58.318 36.000 0.00 0.00 0.00 4.35
5438 21224 9.533253 AAAACAGACATCTACAAATGAAAAAGG 57.467 29.630 0.00 0.00 0.00 3.11
5441 21227 9.734620 CTGAAAACAGACATCTACAAATGAAAA 57.265 29.630 0.00 0.00 0.00 2.29
5442 21228 9.119418 TCTGAAAACAGACATCTACAAATGAAA 57.881 29.630 0.00 0.00 0.00 2.69
5443 21229 8.675705 TCTGAAAACAGACATCTACAAATGAA 57.324 30.769 0.00 0.00 0.00 2.57
5457 21243 5.163353 TGGTGTAGTGATGTCTGAAAACAGA 60.163 40.000 0.00 0.00 31.50 3.41
5458 21244 5.050091 GTGGTGTAGTGATGTCTGAAAACAG 60.050 44.000 0.00 0.00 31.50 3.16
5459 21245 4.814234 GTGGTGTAGTGATGTCTGAAAACA 59.186 41.667 0.00 0.00 0.00 2.83
5460 21246 4.814234 TGTGGTGTAGTGATGTCTGAAAAC 59.186 41.667 0.00 0.00 0.00 2.43
5461 21247 5.029807 TGTGGTGTAGTGATGTCTGAAAA 57.970 39.130 0.00 0.00 0.00 2.29
5462 21248 4.631131 CTGTGGTGTAGTGATGTCTGAAA 58.369 43.478 0.00 0.00 0.00 2.69
5463 21249 3.554960 GCTGTGGTGTAGTGATGTCTGAA 60.555 47.826 0.00 0.00 0.00 3.02
5464 21250 2.029020 GCTGTGGTGTAGTGATGTCTGA 60.029 50.000 0.00 0.00 0.00 3.27
5465 21251 2.289010 TGCTGTGGTGTAGTGATGTCTG 60.289 50.000 0.00 0.00 0.00 3.51
5466 21252 1.970640 TGCTGTGGTGTAGTGATGTCT 59.029 47.619 0.00 0.00 0.00 3.41
5467 21253 2.069273 GTGCTGTGGTGTAGTGATGTC 58.931 52.381 0.00 0.00 0.00 3.06
5468 21254 1.694150 AGTGCTGTGGTGTAGTGATGT 59.306 47.619 0.00 0.00 0.00 3.06
5691 21477 1.072505 GCTGTTGGTCGGGAAAGGA 59.927 57.895 0.00 0.00 0.00 3.36
5743 21530 5.691704 CGGGAAAGAATACCCCATCCAATAA 60.692 44.000 0.00 0.00 42.86 1.40
6265 22238 5.611796 TTTTTGAGAATGTGATGGTCTCG 57.388 39.130 0.00 0.00 40.61 4.04
6399 22374 2.959507 AGAAACAAACGCCTTTGCTT 57.040 40.000 7.93 2.76 40.57 3.91
6785 23062 3.444742 GTGAGGGCATCAATCAATGTTGA 59.555 43.478 2.24 0.00 40.43 3.18
6827 23111 0.981183 TTCGGTTGCAGGTAGTGGAT 59.019 50.000 0.00 0.00 0.00 3.41
7084 23404 3.254166 ACAAACTAGTTGCTGCCTGAATG 59.746 43.478 9.34 2.03 41.31 2.67
7675 24005 9.169592 GTGGGAAGTACATAAAGCTATTGTTAA 57.830 33.333 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.