Multiple sequence alignment - TraesCS1A01G424500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G424500 chr1A 100.000 4293 0 0 1 4293 579577192 579572900 0.000000e+00 7928.0
1 TraesCS1A01G424500 chr1A 87.500 416 46 5 3702 4113 579380746 579380333 3.880000e-130 475.0
2 TraesCS1A01G424500 chr1A 82.511 446 65 5 3669 4114 579423071 579422639 3.130000e-101 379.0
3 TraesCS1A01G424500 chr1A 73.410 692 110 51 2563 3203 579432126 579431458 1.580000e-44 191.0
4 TraesCS1A01G424500 chr1B 92.153 3326 141 30 208 3466 670955790 670959062 0.000000e+00 4586.0
5 TraesCS1A01G424500 chr1B 85.053 1987 230 34 1415 3345 670899924 670901899 0.000000e+00 1962.0
6 TraesCS1A01G424500 chr1B 89.230 1272 128 3 1691 2953 670917386 670918657 0.000000e+00 1581.0
7 TraesCS1A01G424500 chr1B 84.065 433 63 5 3678 4109 670925309 670925736 3.090000e-111 412.0
8 TraesCS1A01G424500 chr1B 89.916 238 24 0 1412 1649 670917070 670917307 1.500000e-79 307.0
9 TraesCS1A01G424500 chr1B 83.099 213 31 4 3672 3881 670967533 670967743 5.670000e-44 189.0
10 TraesCS1A01G424500 chr1B 90.551 127 12 0 3965 4091 670971026 670971152 7.380000e-38 169.0
11 TraesCS1A01G424500 chr1B 87.500 104 13 0 2967 3070 670918709 670918812 2.100000e-23 121.0
12 TraesCS1A01G424500 chr1B 87.500 80 8 2 3301 3379 670924014 670924092 1.640000e-14 91.6
13 TraesCS1A01G424500 chr1D 94.259 2003 110 3 1059 3059 482493292 482491293 0.000000e+00 3057.0
14 TraesCS1A01G424500 chr1D 90.406 1553 136 4 1415 2964 482517065 482515523 0.000000e+00 2030.0
15 TraesCS1A01G424500 chr1D 84.758 2047 245 49 1415 3408 482323885 482325917 0.000000e+00 1989.0
16 TraesCS1A01G424500 chr1D 88.413 1519 168 7 1415 2930 482369750 482371263 0.000000e+00 1823.0
17 TraesCS1A01G424500 chr1D 87.327 939 58 15 3370 4281 482491054 482490150 0.000000e+00 1018.0
18 TraesCS1A01G424500 chr1D 88.047 594 28 12 508 1071 482493902 482493322 0.000000e+00 664.0
19 TraesCS1A01G424500 chr1D 90.675 311 22 4 208 512 482497930 482497621 1.440000e-109 407.0
20 TraesCS1A01G424500 chr1D 82.063 446 67 5 3669 4114 482482409 482481977 6.780000e-98 368.0
21 TraesCS1A01G424500 chr1D 94.093 237 12 2 3099 3334 482491292 482491057 4.080000e-95 359.0
22 TraesCS1A01G424500 chrUn 84.784 2057 237 41 1415 3408 1926992 1929035 0.000000e+00 1995.0
23 TraesCS1A01G424500 chrUn 89.017 1566 157 11 1412 2964 1944515 1946078 0.000000e+00 1925.0
24 TraesCS1A01G424500 chrUn 85.883 1523 193 13 1412 2930 1823612 1825116 0.000000e+00 1602.0
25 TraesCS1A01G424500 chrUn 84.742 426 57 6 3678 4102 1955902 1956320 1.850000e-113 420.0
26 TraesCS1A01G424500 chrUn 77.665 591 87 29 787 1348 1926198 1926772 6.930000e-83 318.0
27 TraesCS1A01G424500 chrUn 77.729 229 27 15 1 208 280176682 280176907 7.540000e-23 119.0
28 TraesCS1A01G424500 chr5D 87.179 195 23 2 19 212 404103685 404103492 2.010000e-53 220.0
29 TraesCS1A01G424500 chr5D 89.116 147 14 1 64 208 397228816 397228670 9.480000e-42 182.0
30 TraesCS1A01G424500 chr3A 83.700 227 18 12 1 210 235365280 235365056 3.390000e-46 196.0
31 TraesCS1A01G424500 chr2A 89.333 150 15 1 64 213 104385234 104385086 2.040000e-43 187.0
32 TraesCS1A01G424500 chr4D 88.591 149 16 1 64 212 334200570 334200423 3.410000e-41 180.0
33 TraesCS1A01G424500 chr4D 87.248 149 17 1 64 210 140903022 140903170 7.380000e-38 169.0
34 TraesCS1A01G424500 chr7A 87.582 153 18 1 64 216 726389460 726389611 4.410000e-40 176.0
35 TraesCS1A01G424500 chr3D 83.010 206 19 9 17 208 98566707 98566504 5.710000e-39 172.0
36 TraesCS1A01G424500 chr7D 87.943 141 15 1 72 210 451855834 451855974 9.550000e-37 165.0
37 TraesCS1A01G424500 chr6D 80.841 214 19 10 1 212 443749329 443749136 9.620000e-32 148.0
38 TraesCS1A01G424500 chr5A 79.221 231 23 14 1 208 457259696 457259468 2.080000e-28 137.0
39 TraesCS1A01G424500 chr2B 78.603 229 26 14 1 208 797237783 797237557 3.480000e-26 130.0
40 TraesCS1A01G424500 chr2D 81.429 140 24 1 76 213 633596183 633596044 3.510000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G424500 chr1A 579572900 579577192 4292 True 7928.000000 7928 100.0000 1 4293 1 chr1A.!!$R4 4292
1 TraesCS1A01G424500 chr1B 670955790 670959062 3272 False 4586.000000 4586 92.1530 208 3466 1 chr1B.!!$F2 3258
2 TraesCS1A01G424500 chr1B 670899924 670901899 1975 False 1962.000000 1962 85.0530 1415 3345 1 chr1B.!!$F1 1930
3 TraesCS1A01G424500 chr1B 670917070 670918812 1742 False 669.666667 1581 88.8820 1412 3070 3 chr1B.!!$F3 1658
4 TraesCS1A01G424500 chr1B 670924014 670925736 1722 False 251.800000 412 85.7825 3301 4109 2 chr1B.!!$F4 808
5 TraesCS1A01G424500 chr1D 482515523 482517065 1542 True 2030.000000 2030 90.4060 1415 2964 1 chr1D.!!$R2 1549
6 TraesCS1A01G424500 chr1D 482323885 482325917 2032 False 1989.000000 1989 84.7580 1415 3408 1 chr1D.!!$F1 1993
7 TraesCS1A01G424500 chr1D 482369750 482371263 1513 False 1823.000000 1823 88.4130 1415 2930 1 chr1D.!!$F2 1515
8 TraesCS1A01G424500 chr1D 482490150 482497930 7780 True 1101.000000 3057 90.8802 208 4281 5 chr1D.!!$R3 4073
9 TraesCS1A01G424500 chrUn 1944515 1946078 1563 False 1925.000000 1925 89.0170 1412 2964 1 chrUn.!!$F2 1552
10 TraesCS1A01G424500 chrUn 1823612 1825116 1504 False 1602.000000 1602 85.8830 1412 2930 1 chrUn.!!$F1 1518
11 TraesCS1A01G424500 chrUn 1926198 1929035 2837 False 1156.500000 1995 81.2245 787 3408 2 chrUn.!!$F5 2621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.039527 GCCACGCTTTTCCAAACGAT 60.040 50.0 0.0 0.00 0.00 3.73 F
931 4707 0.185416 AGGTAGGTCGGTCGATCCAT 59.815 55.0 0.0 0.00 35.57 3.41 F
932 4708 0.597072 GGTAGGTCGGTCGATCCATC 59.403 60.0 0.0 0.00 35.57 3.51 F
2370 6443 0.853530 AGGAGCTCCACCCAGTTTTT 59.146 50.0 33.9 6.77 38.89 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 5573 0.179000 GTGGGCATCTCATCGTCCTT 59.821 55.000 0.00 0.0 0.0 3.36 R
2370 6443 0.944311 GTGCAGCGACGAAGAGGAAA 60.944 55.000 0.00 0.0 0.0 3.13 R
2869 6951 2.019984 GATGTTCATCCTGGAGTTGGC 58.980 52.381 1.52 0.0 0.0 4.52 R
3666 8720 0.180406 ACTGAAGTTTGTGGCGGAGT 59.820 50.000 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.499737 GTGCAATAGCGCGCCTGT 61.500 61.111 30.33 12.78 46.23 4.00
75 76 2.745884 TGCAATAGCGCGCCTGTT 60.746 55.556 30.33 17.43 46.23 3.16
76 77 2.277501 GCAATAGCGCGCCTGTTG 60.278 61.111 30.33 27.91 43.28 3.33
77 78 2.404789 CAATAGCGCGCCTGTTGG 59.595 61.111 30.33 9.21 38.55 3.77
78 79 2.106074 CAATAGCGCGCCTGTTGGA 61.106 57.895 30.33 4.67 38.55 3.53
79 80 1.815421 AATAGCGCGCCTGTTGGAG 60.815 57.895 30.33 0.00 36.16 3.86
85 86 3.188786 CGCCTGTTGGAGCTACGC 61.189 66.667 0.00 0.00 34.57 4.42
86 87 3.188786 GCCTGTTGGAGCTACGCG 61.189 66.667 3.53 3.53 34.57 6.01
87 88 3.188786 CCTGTTGGAGCTACGCGC 61.189 66.667 5.73 0.00 39.57 6.86
88 89 3.545481 CTGTTGGAGCTACGCGCG 61.545 66.667 30.96 30.96 45.59 6.86
100 101 4.255507 CGCGCGCGCTAAATTTTA 57.744 50.000 45.97 0.00 39.32 1.52
101 102 2.105045 CGCGCGCGCTAAATTTTAG 58.895 52.632 45.97 27.04 39.32 1.85
102 103 1.830981 GCGCGCGCTAAATTTTAGC 59.169 52.632 44.38 24.84 38.26 3.09
112 113 4.037690 GCTAAATTTTAGCGTGGATGCTG 58.962 43.478 21.75 0.00 46.70 4.41
113 114 3.508744 AAATTTTAGCGTGGATGCTGG 57.491 42.857 3.50 0.00 46.70 4.85
114 115 2.418368 ATTTTAGCGTGGATGCTGGA 57.582 45.000 3.50 0.00 46.70 3.86
115 116 1.737838 TTTTAGCGTGGATGCTGGAG 58.262 50.000 3.50 0.00 46.70 3.86
116 117 0.744414 TTTAGCGTGGATGCTGGAGC 60.744 55.000 3.50 0.00 46.70 4.70
117 118 2.593468 TTAGCGTGGATGCTGGAGCC 62.593 60.000 3.50 0.00 46.70 4.70
118 119 4.783621 GCGTGGATGCTGGAGCCA 62.784 66.667 0.70 0.70 41.18 4.75
119 120 2.513204 CGTGGATGCTGGAGCCAG 60.513 66.667 6.34 12.17 46.15 4.85
137 138 3.349006 CGCTGTCTGCCACGCTTT 61.349 61.111 0.00 0.00 38.78 3.51
138 139 2.896801 CGCTGTCTGCCACGCTTTT 61.897 57.895 0.00 0.00 38.78 2.27
139 140 1.081840 GCTGTCTGCCACGCTTTTC 60.082 57.895 0.00 0.00 35.15 2.29
140 141 1.576421 CTGTCTGCCACGCTTTTCC 59.424 57.895 0.00 0.00 0.00 3.13
141 142 1.153066 TGTCTGCCACGCTTTTCCA 60.153 52.632 0.00 0.00 0.00 3.53
142 143 0.749818 TGTCTGCCACGCTTTTCCAA 60.750 50.000 0.00 0.00 0.00 3.53
143 144 0.383949 GTCTGCCACGCTTTTCCAAA 59.616 50.000 0.00 0.00 0.00 3.28
144 145 0.383949 TCTGCCACGCTTTTCCAAAC 59.616 50.000 0.00 0.00 0.00 2.93
145 146 0.934436 CTGCCACGCTTTTCCAAACG 60.934 55.000 0.00 0.00 0.00 3.60
146 147 1.357334 GCCACGCTTTTCCAAACGA 59.643 52.632 0.00 0.00 0.00 3.85
147 148 0.039527 GCCACGCTTTTCCAAACGAT 60.040 50.000 0.00 0.00 0.00 3.73
148 149 1.685302 CCACGCTTTTCCAAACGATG 58.315 50.000 0.00 0.00 0.00 3.84
156 157 3.055719 CCAAACGATGGGTGCGCT 61.056 61.111 9.73 0.00 46.27 5.92
157 158 2.176546 CAAACGATGGGTGCGCTG 59.823 61.111 9.73 0.00 0.00 5.18
158 159 3.737172 AAACGATGGGTGCGCTGC 61.737 61.111 9.73 0.69 0.00 5.25
161 162 3.736100 CGATGGGTGCGCTGCAAA 61.736 61.111 9.73 0.00 41.47 3.68
162 163 2.180017 GATGGGTGCGCTGCAAAG 59.820 61.111 9.73 0.00 41.47 2.77
163 164 2.598394 ATGGGTGCGCTGCAAAGT 60.598 55.556 9.73 0.00 41.47 2.66
164 165 1.303236 ATGGGTGCGCTGCAAAGTA 60.303 52.632 9.73 0.00 41.47 2.24
165 166 1.586154 ATGGGTGCGCTGCAAAGTAC 61.586 55.000 9.73 0.00 41.47 2.73
166 167 1.966451 GGGTGCGCTGCAAAGTACT 60.966 57.895 9.73 0.00 41.47 2.73
167 168 1.515521 GGGTGCGCTGCAAAGTACTT 61.516 55.000 9.73 1.12 41.47 2.24
168 169 0.310854 GGTGCGCTGCAAAGTACTTT 59.689 50.000 15.22 15.22 41.47 2.66
169 170 1.269051 GGTGCGCTGCAAAGTACTTTT 60.269 47.619 18.25 1.50 41.47 2.27
170 171 2.459934 GTGCGCTGCAAAGTACTTTTT 58.540 42.857 18.25 0.00 41.47 1.94
171 172 3.549221 GGTGCGCTGCAAAGTACTTTTTA 60.549 43.478 18.25 9.25 41.47 1.52
172 173 3.664025 GTGCGCTGCAAAGTACTTTTTAG 59.336 43.478 18.25 18.13 41.47 1.85
173 174 3.234386 GCGCTGCAAAGTACTTTTTAGG 58.766 45.455 18.25 8.42 0.00 2.69
174 175 3.821841 CGCTGCAAAGTACTTTTTAGGG 58.178 45.455 18.25 20.10 0.00 3.53
175 176 3.575630 GCTGCAAAGTACTTTTTAGGGC 58.424 45.455 18.25 17.30 0.00 5.19
176 177 3.821841 CTGCAAAGTACTTTTTAGGGCG 58.178 45.455 18.25 10.41 0.00 6.13
177 178 3.215975 TGCAAAGTACTTTTTAGGGCGT 58.784 40.909 18.25 0.00 0.00 5.68
178 179 3.251487 TGCAAAGTACTTTTTAGGGCGTC 59.749 43.478 18.25 3.42 0.00 5.19
179 180 3.666111 GCAAAGTACTTTTTAGGGCGTCG 60.666 47.826 18.25 4.59 0.00 5.12
180 181 1.718396 AGTACTTTTTAGGGCGTCGC 58.282 50.000 9.22 9.22 0.00 5.19
181 182 0.367887 GTACTTTTTAGGGCGTCGCG 59.632 55.000 11.75 0.00 0.00 5.87
200 201 3.365265 GTTGGGCGGCTGTTGGAG 61.365 66.667 9.56 0.00 0.00 3.86
201 202 3.565214 TTGGGCGGCTGTTGGAGA 61.565 61.111 9.56 0.00 0.00 3.71
202 203 2.905996 TTGGGCGGCTGTTGGAGAT 61.906 57.895 9.56 0.00 0.00 2.75
203 204 2.825836 GGGCGGCTGTTGGAGATG 60.826 66.667 9.56 0.00 0.00 2.90
204 205 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
205 206 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
206 207 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
255 258 5.232202 CGACACACGTGATAATAAGCAATCT 59.768 40.000 25.01 0.00 37.22 2.40
405 417 6.452242 AGAGTTTCTTTTTCCAAACGTGTTT 58.548 32.000 0.00 0.00 37.54 2.83
408 420 3.254892 TCTTTTTCCAAACGTGTTTGCC 58.745 40.909 17.78 0.00 46.25 4.52
422 434 1.169661 TTTGCCCGTTTGAGCACGAT 61.170 50.000 0.00 0.00 43.15 3.73
434 446 2.445845 CACGATCTGGGCCCCCTA 60.446 66.667 22.27 4.47 36.94 3.53
521 4259 4.263418 ACATCTATACTACTCCCTCCGTCC 60.263 50.000 0.00 0.00 0.00 4.79
532 4270 2.914278 TCCCTCCGTCCCAAAAGATTTA 59.086 45.455 0.00 0.00 0.00 1.40
584 4322 2.287393 TGCAACTAATCGCGCTCTAA 57.713 45.000 5.56 0.00 0.00 2.10
585 4323 2.612604 TGCAACTAATCGCGCTCTAAA 58.387 42.857 5.56 0.00 0.00 1.85
618 4371 9.484806 TGCATCCATATCTAGATAAATCTGAGA 57.515 33.333 16.27 9.59 37.76 3.27
619 4372 9.748708 GCATCCATATCTAGATAAATCTGAGAC 57.251 37.037 16.27 2.94 37.76 3.36
879 4651 1.078143 GATTTGAGCCTGACCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
931 4707 0.185416 AGGTAGGTCGGTCGATCCAT 59.815 55.000 0.00 0.00 35.57 3.41
932 4708 0.597072 GGTAGGTCGGTCGATCCATC 59.403 60.000 0.00 0.00 35.57 3.51
933 4709 1.315690 GTAGGTCGGTCGATCCATCA 58.684 55.000 0.00 0.00 35.57 3.07
934 4710 1.267261 GTAGGTCGGTCGATCCATCAG 59.733 57.143 0.00 0.00 35.57 2.90
935 4711 1.300233 GGTCGGTCGATCCATCAGC 60.300 63.158 0.00 0.00 35.57 4.26
936 4712 1.300233 GTCGGTCGATCCATCAGCC 60.300 63.158 0.00 0.00 35.57 4.85
1039 4842 4.272504 CAGTTGTCCGTTTTCAAGAGCTTA 59.727 41.667 0.00 0.00 0.00 3.09
1361 5218 4.430765 CCGTTAGTCTGCGCCGGT 62.431 66.667 4.18 0.00 34.10 5.28
1554 5573 1.282157 TCTCAGAGGAGGACATCGACA 59.718 52.381 0.00 0.00 41.69 4.35
1577 5596 1.145598 CGATGAGATGCCCACTGCT 59.854 57.895 0.00 0.00 42.00 4.24
1687 5760 0.881118 ACCTTTGCATGCTACAACCG 59.119 50.000 20.33 2.39 0.00 4.44
1875 5948 1.148310 CGAAGTTCCTTCACGTGCAT 58.852 50.000 11.67 0.00 40.17 3.96
1992 6065 2.280524 CGCCGTGAGTTCCACCAA 60.281 61.111 0.00 0.00 42.76 3.67
2195 6268 3.131478 GGCCAACCCATCGAACCG 61.131 66.667 0.00 0.00 0.00 4.44
2196 6269 2.359478 GCCAACCCATCGAACCGT 60.359 61.111 0.00 0.00 0.00 4.83
2276 6349 2.165998 GCTGCCCATCTTCTTCTTTGT 58.834 47.619 0.00 0.00 0.00 2.83
2370 6443 0.853530 AGGAGCTCCACCCAGTTTTT 59.146 50.000 33.90 6.77 38.89 1.94
2479 6552 3.189618 TCGTCTCGCTATTCCTCTACA 57.810 47.619 0.00 0.00 0.00 2.74
2492 6565 1.359848 CTCTACATGTCGTTGGTGGC 58.640 55.000 0.00 0.00 0.00 5.01
2559 6632 2.080693 GCGTACACATTCCCAATGACA 58.919 47.619 3.24 0.00 41.46 3.58
2843 6922 5.951747 TCCCAAATTTCAGTTCCTATTCCAG 59.048 40.000 0.00 0.00 0.00 3.86
2869 6951 1.435515 GCCTACTCTGACTCTGGCG 59.564 63.158 0.00 0.00 0.00 5.69
2902 6984 0.037326 GAACATCAGTGCCGGTGAGA 60.037 55.000 1.90 0.00 0.00 3.27
2938 7020 1.734465 GGCACGGAAGAGAAGAATGTG 59.266 52.381 0.00 0.00 0.00 3.21
2946 7029 4.158025 GGAAGAGAAGAATGTGAGACGGTA 59.842 45.833 0.00 0.00 0.00 4.02
3260 7395 2.769209 AGAATGGATGGCCTAGTGAGT 58.231 47.619 3.32 0.00 34.31 3.41
3358 7506 4.523083 TGCTATTCCCTCGTTGCTTAAAT 58.477 39.130 0.00 0.00 0.00 1.40
3416 7564 8.989131 ACTAAGCTTTCCTTACATGATAGGTTA 58.011 33.333 3.20 5.84 34.72 2.85
3473 8426 7.432148 TCCGGCATCCATATAGTTACATATT 57.568 36.000 0.00 0.00 0.00 1.28
3476 8429 9.607988 CCGGCATCCATATAGTTACATATTTAA 57.392 33.333 0.00 0.00 0.00 1.52
3490 8443 9.991388 GTTACATATTTAACCGTATTGCTTTGA 57.009 29.630 0.98 0.00 0.00 2.69
3499 8548 4.694037 ACCGTATTGCTTTGAACTAACTCC 59.306 41.667 0.00 0.00 0.00 3.85
3502 8551 5.178623 CGTATTGCTTTGAACTAACTCCACA 59.821 40.000 0.00 0.00 0.00 4.17
3514 8563 7.657761 TGAACTAACTCCACAAATTCTTCTCTC 59.342 37.037 0.00 0.00 0.00 3.20
3515 8564 7.309770 ACTAACTCCACAAATTCTTCTCTCT 57.690 36.000 0.00 0.00 0.00 3.10
3516 8565 7.382898 ACTAACTCCACAAATTCTTCTCTCTC 58.617 38.462 0.00 0.00 0.00 3.20
3521 8570 7.557719 ACTCCACAAATTCTTCTCTCTCAAAAA 59.442 33.333 0.00 0.00 0.00 1.94
3522 8571 7.934457 TCCACAAATTCTTCTCTCTCAAAAAG 58.066 34.615 0.00 0.00 0.00 2.27
3523 8572 7.013655 TCCACAAATTCTTCTCTCTCAAAAAGG 59.986 37.037 0.00 0.00 0.00 3.11
3661 8715 4.278170 TCCCACAAATCAAAGCACTTACAG 59.722 41.667 0.00 0.00 0.00 2.74
3663 8717 5.047802 CCCACAAATCAAAGCACTTACAGAT 60.048 40.000 0.00 0.00 0.00 2.90
3664 8718 6.088824 CCACAAATCAAAGCACTTACAGATC 58.911 40.000 0.00 0.00 0.00 2.75
3665 8719 6.294120 CCACAAATCAAAGCACTTACAGATCA 60.294 38.462 0.00 0.00 0.00 2.92
3666 8720 7.140705 CACAAATCAAAGCACTTACAGATCAA 58.859 34.615 0.00 0.00 0.00 2.57
3667 8721 7.113965 CACAAATCAAAGCACTTACAGATCAAC 59.886 37.037 0.00 0.00 0.00 3.18
3682 8759 1.305201 TCAACTCCGCCACAAACTTC 58.695 50.000 0.00 0.00 0.00 3.01
3686 8763 1.308998 CTCCGCCACAAACTTCAGTT 58.691 50.000 0.00 0.00 40.50 3.16
3700 8777 6.833342 AACTTCAGTTCAAAATGCATGTTC 57.167 33.333 0.00 0.00 31.64 3.18
3804 8881 6.098266 ACTTGCTCTATGGTTTTCCTTTTTGT 59.902 34.615 0.00 0.00 41.38 2.83
3806 8883 7.589958 TGCTCTATGGTTTTCCTTTTTGTAA 57.410 32.000 0.00 0.00 41.38 2.41
3807 8884 8.189119 TGCTCTATGGTTTTCCTTTTTGTAAT 57.811 30.769 0.00 0.00 41.38 1.89
3868 8945 8.893219 GAGAATCCAATATTGAGTATGTCACA 57.107 34.615 17.23 0.00 33.71 3.58
3889 8966 6.015504 CACATAAGATTTTCTTTCGGTCGTG 58.984 40.000 0.00 0.00 37.89 4.35
3963 9040 4.187694 CTCAAGCAAGTGTATCCTCTTCC 58.812 47.826 0.00 0.00 0.00 3.46
3983 9060 5.628797 TCCAATACACATCATGCTTCCTA 57.371 39.130 0.00 0.00 0.00 2.94
4026 9103 4.082081 TCACGTCCATGTCCGTACTAATTT 60.082 41.667 6.58 0.00 35.16 1.82
4059 9136 0.514691 CTCCAGCGAACTCAAGTTGC 59.485 55.000 0.00 4.93 38.56 4.17
4104 9181 3.576982 CCCTACCACAGTGAACTTGTAGA 59.423 47.826 12.91 0.00 0.00 2.59
4115 9192 5.944599 AGTGAACTTGTAGAGACCTCGATTA 59.055 40.000 0.00 0.00 34.09 1.75
4123 9200 7.317842 TGTAGAGACCTCGATTACTAAAGTG 57.682 40.000 0.00 0.00 34.09 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.320396 TGCACAAACATTGCATACATATTTTT 57.680 26.923 0.00 0.00 45.06 1.94
37 38 7.902387 TGCACAAACATTGCATACATATTTT 57.098 28.000 0.00 0.00 45.06 1.82
48 49 1.059549 GCGCTATTGCACAAACATTGC 59.940 47.619 0.00 0.00 40.63 3.56
49 50 1.318197 CGCGCTATTGCACAAACATTG 59.682 47.619 5.56 0.00 39.64 2.82
50 51 1.616620 CGCGCTATTGCACAAACATT 58.383 45.000 5.56 0.00 39.64 2.71
51 52 0.798009 GCGCGCTATTGCACAAACAT 60.798 50.000 26.67 0.00 39.64 2.71
52 53 1.441849 GCGCGCTATTGCACAAACA 60.442 52.632 26.67 0.00 39.64 2.83
53 54 2.152078 GGCGCGCTATTGCACAAAC 61.152 57.895 32.29 5.31 39.64 2.93
54 55 2.178025 GGCGCGCTATTGCACAAA 59.822 55.556 32.29 0.00 39.64 2.83
55 56 2.745884 AGGCGCGCTATTGCACAA 60.746 55.556 32.29 0.00 39.64 3.33
56 57 3.498834 CAGGCGCGCTATTGCACA 61.499 61.111 32.29 0.00 39.64 4.57
57 58 3.039202 AACAGGCGCGCTATTGCAC 62.039 57.895 32.29 12.47 39.64 4.57
58 59 2.745884 AACAGGCGCGCTATTGCA 60.746 55.556 32.29 0.00 39.64 4.08
59 60 2.277501 CAACAGGCGCGCTATTGC 60.278 61.111 32.29 14.13 0.00 3.56
60 61 2.040213 CTCCAACAGGCGCGCTATTG 62.040 60.000 32.29 27.99 0.00 1.90
61 62 1.815421 CTCCAACAGGCGCGCTATT 60.815 57.895 32.29 19.29 0.00 1.73
62 63 2.202932 CTCCAACAGGCGCGCTAT 60.203 61.111 32.29 17.65 0.00 2.97
66 67 3.188786 GTAGCTCCAACAGGCGCG 61.189 66.667 0.00 0.00 38.18 6.86
67 68 3.188786 CGTAGCTCCAACAGGCGC 61.189 66.667 0.00 0.00 33.32 6.53
84 85 1.830981 GCTAAAATTTAGCGCGCGC 59.169 52.632 45.10 45.10 42.33 6.86
90 91 4.037690 CAGCATCCACGCTAAAATTTAGC 58.962 43.478 23.64 23.64 41.38 3.09
91 92 4.335315 TCCAGCATCCACGCTAAAATTTAG 59.665 41.667 8.32 8.32 41.38 1.85
92 93 4.265893 TCCAGCATCCACGCTAAAATTTA 58.734 39.130 0.00 0.00 41.38 1.40
93 94 3.088532 TCCAGCATCCACGCTAAAATTT 58.911 40.909 0.00 0.00 41.38 1.82
94 95 2.684881 CTCCAGCATCCACGCTAAAATT 59.315 45.455 0.00 0.00 41.38 1.82
95 96 2.292267 CTCCAGCATCCACGCTAAAAT 58.708 47.619 0.00 0.00 41.38 1.82
96 97 1.737838 CTCCAGCATCCACGCTAAAA 58.262 50.000 0.00 0.00 41.38 1.52
97 98 0.744414 GCTCCAGCATCCACGCTAAA 60.744 55.000 0.00 0.00 41.38 1.85
98 99 1.153369 GCTCCAGCATCCACGCTAA 60.153 57.895 0.00 0.00 41.38 3.09
99 100 2.501128 GCTCCAGCATCCACGCTA 59.499 61.111 0.00 0.00 41.38 4.26
100 101 4.479993 GGCTCCAGCATCCACGCT 62.480 66.667 0.03 0.00 45.21 5.07
101 102 4.783621 TGGCTCCAGCATCCACGC 62.784 66.667 0.03 0.00 44.36 5.34
102 103 2.513204 CTGGCTCCAGCATCCACG 60.513 66.667 2.59 0.00 44.36 4.94
121 122 1.081840 GAAAAGCGTGGCAGACAGC 60.082 57.895 0.00 0.00 44.65 4.40
122 123 1.165907 TGGAAAAGCGTGGCAGACAG 61.166 55.000 0.00 0.00 0.00 3.51
123 124 0.749818 TTGGAAAAGCGTGGCAGACA 60.750 50.000 0.00 0.00 0.00 3.41
124 125 0.383949 TTTGGAAAAGCGTGGCAGAC 59.616 50.000 0.00 0.00 0.00 3.51
125 126 0.383949 GTTTGGAAAAGCGTGGCAGA 59.616 50.000 0.00 0.00 0.00 4.26
126 127 0.934436 CGTTTGGAAAAGCGTGGCAG 60.934 55.000 0.00 0.00 0.00 4.85
127 128 1.064946 CGTTTGGAAAAGCGTGGCA 59.935 52.632 0.00 0.00 0.00 4.92
128 129 0.039527 ATCGTTTGGAAAAGCGTGGC 60.040 50.000 0.00 0.00 0.00 5.01
129 130 1.685302 CATCGTTTGGAAAAGCGTGG 58.315 50.000 0.00 0.00 0.00 4.94
139 140 3.055719 AGCGCACCCATCGTTTGG 61.056 61.111 11.47 0.82 46.00 3.28
140 141 2.176546 CAGCGCACCCATCGTTTG 59.823 61.111 11.47 0.00 0.00 2.93
141 142 3.737172 GCAGCGCACCCATCGTTT 61.737 61.111 11.47 0.00 0.00 3.60
144 145 3.672255 CTTTGCAGCGCACCCATCG 62.672 63.158 11.47 0.00 38.71 3.84
145 146 1.305219 TACTTTGCAGCGCACCCATC 61.305 55.000 11.47 0.00 38.71 3.51
146 147 1.303236 TACTTTGCAGCGCACCCAT 60.303 52.632 11.47 0.00 38.71 4.00
147 148 2.112087 TACTTTGCAGCGCACCCA 59.888 55.556 11.47 0.00 38.71 4.51
148 149 1.515521 AAGTACTTTGCAGCGCACCC 61.516 55.000 11.47 0.00 38.71 4.61
149 150 0.310854 AAAGTACTTTGCAGCGCACC 59.689 50.000 19.94 0.00 38.71 5.01
150 151 2.119671 AAAAGTACTTTGCAGCGCAC 57.880 45.000 21.22 0.68 38.71 5.34
151 152 2.861462 AAAAAGTACTTTGCAGCGCA 57.139 40.000 21.22 0.00 36.47 6.09
152 153 3.234386 CCTAAAAAGTACTTTGCAGCGC 58.766 45.455 21.22 0.00 32.36 5.92
153 154 3.821841 CCCTAAAAAGTACTTTGCAGCG 58.178 45.455 21.22 9.94 32.36 5.18
154 155 3.575630 GCCCTAAAAAGTACTTTGCAGC 58.424 45.455 21.22 15.21 32.36 5.25
155 156 3.252458 ACGCCCTAAAAAGTACTTTGCAG 59.748 43.478 21.22 18.68 32.36 4.41
156 157 3.215975 ACGCCCTAAAAAGTACTTTGCA 58.784 40.909 21.22 11.08 32.36 4.08
157 158 3.666111 CGACGCCCTAAAAAGTACTTTGC 60.666 47.826 21.22 17.35 32.36 3.68
158 159 3.666111 GCGACGCCCTAAAAAGTACTTTG 60.666 47.826 21.22 9.61 32.36 2.77
159 160 2.481568 GCGACGCCCTAAAAAGTACTTT 59.518 45.455 15.22 15.22 0.00 2.66
160 161 2.071540 GCGACGCCCTAAAAAGTACTT 58.928 47.619 9.14 1.12 0.00 2.24
161 162 1.718396 GCGACGCCCTAAAAAGTACT 58.282 50.000 9.14 0.00 0.00 2.73
162 163 0.367887 CGCGACGCCCTAAAAAGTAC 59.632 55.000 15.34 0.00 0.00 2.73
163 164 2.740668 CGCGACGCCCTAAAAAGTA 58.259 52.632 15.34 0.00 0.00 2.24
164 165 3.557824 CGCGACGCCCTAAAAAGT 58.442 55.556 15.34 0.00 0.00 2.66
183 184 3.365265 CTCCAACAGCCGCCCAAC 61.365 66.667 0.00 0.00 0.00 3.77
184 185 2.905996 ATCTCCAACAGCCGCCCAA 61.906 57.895 0.00 0.00 0.00 4.12
185 186 3.329889 ATCTCCAACAGCCGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
186 187 2.825836 CATCTCCAACAGCCGCCC 60.826 66.667 0.00 0.00 0.00 6.13
187 188 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
188 189 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
189 190 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
200 201 3.931578 ACCACACAGTCTTAAGAGCATC 58.068 45.455 5.12 0.00 0.00 3.91
201 202 4.322801 GGTACCACACAGTCTTAAGAGCAT 60.323 45.833 7.15 0.00 0.00 3.79
202 203 3.006537 GGTACCACACAGTCTTAAGAGCA 59.993 47.826 7.15 0.00 0.00 4.26
203 204 3.006537 TGGTACCACACAGTCTTAAGAGC 59.993 47.826 11.60 1.27 0.00 4.09
204 205 4.557205 GTGGTACCACACAGTCTTAAGAG 58.443 47.826 35.21 0.00 45.53 2.85
205 206 4.595762 GTGGTACCACACAGTCTTAAGA 57.404 45.455 35.21 0.00 45.53 2.10
206 207 3.070446 TGGTGGTACCACACAGTCTTAAG 59.930 47.826 38.81 0.00 44.79 1.85
231 234 4.833469 TTGCTTATTATCACGTGTGTCG 57.167 40.909 16.51 0.42 46.00 4.35
255 258 1.609555 GGTGGTGGCGTGAATTGTTTA 59.390 47.619 0.00 0.00 0.00 2.01
267 270 3.223589 GTTGGTGTGGGTGGTGGC 61.224 66.667 0.00 0.00 0.00 5.01
405 417 2.031919 ATCGTGCTCAAACGGGCA 59.968 55.556 0.00 0.00 43.73 5.36
408 420 1.361668 CCCAGATCGTGCTCAAACGG 61.362 60.000 0.00 0.00 43.73 4.44
422 434 1.645402 GCAAAGATAGGGGGCCCAGA 61.645 60.000 26.86 12.08 38.92 3.86
432 444 8.461222 TGACTGATTAAATTGGTGCAAAGATAG 58.539 33.333 0.00 0.00 0.00 2.08
434 446 7.230849 TGACTGATTAAATTGGTGCAAAGAT 57.769 32.000 0.00 0.00 0.00 2.40
493 508 8.266473 ACGGAGGGAGTAGTATAGATGTATTAG 58.734 40.741 0.00 0.00 0.00 1.73
501 516 2.641815 GGGACGGAGGGAGTAGTATAGA 59.358 54.545 0.00 0.00 0.00 1.98
569 4307 6.509677 GCATTTAACTTTAGAGCGCGATTAGT 60.510 38.462 12.10 3.15 0.00 2.24
573 4311 3.621268 TGCATTTAACTTTAGAGCGCGAT 59.379 39.130 12.10 1.23 0.00 4.58
608 4361 6.448369 TTCCTTTCCCTTGTCTCAGATTTA 57.552 37.500 0.00 0.00 0.00 1.40
615 4368 8.560374 CGAATAATATTTCCTTTCCCTTGTCTC 58.440 37.037 0.00 0.00 0.00 3.36
616 4369 7.502561 CCGAATAATATTTCCTTTCCCTTGTCT 59.497 37.037 0.00 0.00 0.00 3.41
617 4370 7.255486 CCCGAATAATATTTCCTTTCCCTTGTC 60.255 40.741 0.00 0.00 0.00 3.18
618 4371 6.549736 CCCGAATAATATTTCCTTTCCCTTGT 59.450 38.462 0.00 0.00 0.00 3.16
619 4372 6.516693 GCCCGAATAATATTTCCTTTCCCTTG 60.517 42.308 0.00 0.00 0.00 3.61
622 4375 4.082949 CGCCCGAATAATATTTCCTTTCCC 60.083 45.833 0.00 0.00 0.00 3.97
623 4376 4.517832 ACGCCCGAATAATATTTCCTTTCC 59.482 41.667 0.00 0.00 0.00 3.13
624 4377 5.614013 CGACGCCCGAATAATATTTCCTTTC 60.614 44.000 0.00 0.00 41.76 2.62
722 4494 0.665298 TGTGATGGAGAGCTCGATCG 59.335 55.000 9.36 9.36 44.48 3.69
934 4710 1.748122 CACACATCCCAGCTGAGGC 60.748 63.158 17.39 0.00 39.06 4.70
935 4711 0.675837 CACACACATCCCAGCTGAGG 60.676 60.000 17.39 15.01 0.00 3.86
936 4712 0.035881 ACACACACATCCCAGCTGAG 59.964 55.000 17.39 0.39 0.00 3.35
1039 4842 1.893808 CACCGTTGAAGCCAGCTGT 60.894 57.895 13.81 0.00 0.00 4.40
1228 5085 1.726791 CGTCTTTGGTCATCTTGTCGG 59.273 52.381 0.00 0.00 0.00 4.79
1234 5091 1.741770 GCCGCGTCTTTGGTCATCT 60.742 57.895 4.92 0.00 0.00 2.90
1255 5112 3.157252 TCTCATCCTGAGCCGCCC 61.157 66.667 0.00 0.00 43.95 6.13
1554 5573 0.179000 GTGGGCATCTCATCGTCCTT 59.821 55.000 0.00 0.00 0.00 3.36
1577 5596 4.789075 GCGGCGAAGTAGCGGTCA 62.789 66.667 12.98 0.00 39.28 4.02
2370 6443 0.944311 GTGCAGCGACGAAGAGGAAA 60.944 55.000 0.00 0.00 0.00 3.13
2492 6565 2.470286 GAAAGAGGTTGACGCGCG 59.530 61.111 30.96 30.96 0.00 6.86
2559 6632 2.594592 GTCGCCAAGGCCACACTT 60.595 61.111 5.01 0.00 37.98 3.16
2579 6652 5.049828 TGTCTACCTTCGATGCATACAATG 58.950 41.667 0.00 0.00 0.00 2.82
2782 6855 4.948847 TCCTTGACATCATAACTCGATGG 58.051 43.478 5.25 0.00 43.75 3.51
2869 6951 2.019984 GATGTTCATCCTGGAGTTGGC 58.980 52.381 1.52 0.00 0.00 4.52
2902 6984 2.034066 CCCGTGTGCCATTGGAGT 59.966 61.111 6.95 0.00 0.00 3.85
2938 7020 1.873698 TGTTTTGCACCTACCGTCTC 58.126 50.000 0.00 0.00 0.00 3.36
3013 7136 3.523606 ATGTGCAGCAAGTTCACAAAA 57.476 38.095 0.00 0.00 42.97 2.44
3184 7318 7.769044 GCAATTTCAGGTCTATGGAGTTACTTA 59.231 37.037 0.00 0.00 0.00 2.24
3260 7395 5.596836 AATCTCACTTCCAAAGTTGCAAA 57.403 34.783 0.00 0.00 40.46 3.68
3358 7506 3.186909 CGCCATCAACAGTATCTTTCGA 58.813 45.455 0.00 0.00 0.00 3.71
3473 8426 7.095102 GGAGTTAGTTCAAAGCAATACGGTTAA 60.095 37.037 0.00 0.00 34.08 2.01
3476 8429 4.694037 GGAGTTAGTTCAAAGCAATACGGT 59.306 41.667 0.00 0.00 0.00 4.83
3478 8431 5.178623 TGTGGAGTTAGTTCAAAGCAATACG 59.821 40.000 0.00 0.00 0.00 3.06
3479 8432 6.554334 TGTGGAGTTAGTTCAAAGCAATAC 57.446 37.500 0.00 0.00 0.00 1.89
3480 8433 7.575414 TTTGTGGAGTTAGTTCAAAGCAATA 57.425 32.000 0.00 0.00 0.00 1.90
3481 8434 6.463995 TTTGTGGAGTTAGTTCAAAGCAAT 57.536 33.333 0.00 0.00 0.00 3.56
3483 8436 6.321181 AGAATTTGTGGAGTTAGTTCAAAGCA 59.679 34.615 0.00 0.00 32.82 3.91
3484 8437 6.739112 AGAATTTGTGGAGTTAGTTCAAAGC 58.261 36.000 0.00 0.00 32.82 3.51
3485 8438 8.624776 AGAAGAATTTGTGGAGTTAGTTCAAAG 58.375 33.333 0.00 0.00 32.82 2.77
3487 8440 7.993183 AGAGAAGAATTTGTGGAGTTAGTTCAA 59.007 33.333 0.00 0.00 0.00 2.69
3490 8443 7.740805 AGAGAGAAGAATTTGTGGAGTTAGTT 58.259 34.615 0.00 0.00 0.00 2.24
3491 8444 7.015682 TGAGAGAGAAGAATTTGTGGAGTTAGT 59.984 37.037 0.00 0.00 0.00 2.24
3499 8548 7.710896 ACCTTTTTGAGAGAGAAGAATTTGTG 58.289 34.615 0.00 0.00 0.00 3.33
3502 8551 9.278978 GTAGACCTTTTTGAGAGAGAAGAATTT 57.721 33.333 0.00 0.00 0.00 1.82
3516 8565 9.893305 ACGAGAAATAATTTGTAGACCTTTTTG 57.107 29.630 0.00 0.00 0.00 2.44
3521 8570 6.879458 AGCAACGAGAAATAATTTGTAGACCT 59.121 34.615 0.00 0.00 0.00 3.85
3522 8571 7.073342 AGCAACGAGAAATAATTTGTAGACC 57.927 36.000 0.00 0.00 0.00 3.85
3540 8589 7.218773 CACATATGAGGTTTTCATTAAGCAACG 59.781 37.037 10.38 0.00 44.14 4.10
3604 8654 1.876156 GTCTCTGTTCCAGGCAACAAG 59.124 52.381 6.10 6.71 35.83 3.16
3608 8658 1.423584 TCTGTCTCTGTTCCAGGCAA 58.576 50.000 0.00 0.00 31.51 4.52
3610 8660 1.346068 AGTTCTGTCTCTGTTCCAGGC 59.654 52.381 0.00 0.00 31.51 4.85
3645 8695 6.150140 GGAGTTGATCTGTAAGTGCTTTGATT 59.850 38.462 0.00 0.00 33.76 2.57
3661 8715 1.523758 AGTTTGTGGCGGAGTTGATC 58.476 50.000 0.00 0.00 0.00 2.92
3663 8717 1.305201 GAAGTTTGTGGCGGAGTTGA 58.695 50.000 0.00 0.00 0.00 3.18
3664 8718 1.002468 CTGAAGTTTGTGGCGGAGTTG 60.002 52.381 0.00 0.00 0.00 3.16
3665 8719 1.308998 CTGAAGTTTGTGGCGGAGTT 58.691 50.000 0.00 0.00 0.00 3.01
3666 8720 0.180406 ACTGAAGTTTGTGGCGGAGT 59.820 50.000 0.00 0.00 0.00 3.85
3667 8721 1.264288 GAACTGAAGTTTGTGGCGGAG 59.736 52.381 0.00 0.00 38.56 4.63
3682 8759 5.905181 GCAAAAGAACATGCATTTTGAACTG 59.095 36.000 23.91 7.84 43.37 3.16
3686 8763 5.504337 GCAAGCAAAAGAACATGCATTTTGA 60.504 36.000 23.91 0.00 43.37 2.69
3700 8777 5.287226 AGTTCATCTTTCTGCAAGCAAAAG 58.713 37.500 16.49 16.49 31.70 2.27
3760 8837 1.301009 GGCACGAGTATGCTAGCCC 60.301 63.158 13.29 0.00 45.38 5.19
3804 8881 9.555727 GATAACAATAGAGCCAGTGGTTAATTA 57.444 33.333 11.74 0.00 0.00 1.40
3806 8883 7.806180 AGATAACAATAGAGCCAGTGGTTAAT 58.194 34.615 11.74 0.00 0.00 1.40
3807 8884 7.125811 AGAGATAACAATAGAGCCAGTGGTTAA 59.874 37.037 11.74 0.00 0.00 2.01
3868 8945 6.128363 GGAACACGACCGAAAGAAAATCTTAT 60.128 38.462 0.00 0.00 35.27 1.73
3889 8966 1.268032 CGTGCTTGTGTCAAGTGGAAC 60.268 52.381 10.49 4.79 0.00 3.62
3963 9040 7.500720 TCATTAGGAAGCATGATGTGTATTG 57.499 36.000 0.00 0.00 0.00 1.90
3972 9049 2.773661 TCAGGCTCATTAGGAAGCATGA 59.226 45.455 7.53 7.53 44.08 3.07
4004 9081 2.925578 TTAGTACGGACATGGACGTG 57.074 50.000 22.04 4.86 43.93 4.49
4013 9090 7.549615 AAAAGCCTATGAAATTAGTACGGAC 57.450 36.000 0.00 0.00 0.00 4.79
4026 9103 3.641436 TCGCTGGAGATAAAAGCCTATGA 59.359 43.478 0.00 0.00 33.24 2.15
4059 9136 4.379499 GGAAAGACCTAAATTTGAGCACCG 60.379 45.833 0.00 0.00 35.41 4.94
4104 9181 5.507637 TCCTCACTTTAGTAATCGAGGTCT 58.492 41.667 16.49 0.00 40.74 3.85
4206 9287 1.239347 CCATCTGCATGCATCCTCTG 58.761 55.000 22.97 13.42 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.