Multiple sequence alignment - TraesCS1A01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G424100 chr1A 100.000 3626 0 0 1 3626 579170978 579174603 0.000000e+00 6697.0
1 TraesCS1A01G424100 chr1A 91.630 1816 111 18 818 2626 584809288 584807507 0.000000e+00 2473.0
2 TraesCS1A01G424100 chr1A 92.083 240 18 1 2833 3072 584806956 584806718 1.610000e-88 337.0
3 TraesCS1A01G424100 chr1A 85.274 292 17 9 419 703 584809749 584809477 9.920000e-71 278.0
4 TraesCS1A01G424100 chr1A 83.509 285 30 11 419 703 579163524 579163791 2.160000e-62 250.0
5 TraesCS1A01G424100 chr1A 74.046 524 97 26 3064 3576 95105112 95104617 1.030000e-40 178.0
6 TraesCS1A01G424100 chr1D 94.239 2517 108 18 767 3260 482993778 482991276 0.000000e+00 3810.0
7 TraesCS1A01G424100 chr1D 92.797 1666 102 9 965 2625 427704775 427706427 0.000000e+00 2396.0
8 TraesCS1A01G424100 chr1D 90.106 1890 120 26 767 2626 487224334 487222482 0.000000e+00 2392.0
9 TraesCS1A01G424100 chr1D 88.701 354 10 16 472 804 482994832 482994488 4.360000e-109 405.0
10 TraesCS1A01G424100 chr1D 94.515 237 12 1 3391 3626 482990810 482990574 7.400000e-97 364.0
11 TraesCS1A01G424100 chr1D 90.204 245 18 3 2833 3072 487222009 487221766 7.560000e-82 315.0
12 TraesCS1A01G424100 chr1D 90.749 227 16 4 419 642 482994324 482994100 7.610000e-77 298.0
13 TraesCS1A01G424100 chr1D 74.499 549 122 16 3072 3605 26645028 26644483 4.710000e-54 222.0
14 TraesCS1A01G424100 chr1D 81.944 216 21 11 2622 2829 427706467 427706672 2.240000e-37 167.0
15 TraesCS1A01G424100 chr1D 91.743 109 5 2 970 1078 482994475 482994371 8.110000e-32 148.0
16 TraesCS1A01G424100 chr1D 82.171 129 7 8 767 879 427704408 427704536 2.980000e-16 97.1
17 TraesCS1A01G424100 chr1B 92.971 1949 103 15 885 2827 671258739 671260659 0.000000e+00 2809.0
18 TraesCS1A01G424100 chr1B 88.598 2219 150 51 419 2610 678469395 678471537 0.000000e+00 2601.0
19 TraesCS1A01G424100 chr1B 90.347 404 36 3 1 403 671257801 671258202 8.920000e-146 527.0
20 TraesCS1A01G424100 chr1B 85.849 424 26 15 419 812 671258285 671258704 1.560000e-113 420.0
21 TraesCS1A01G424100 chr1B 83.740 246 27 7 2833 3073 678472449 678472686 1.690000e-53 220.0
22 TraesCS1A01G424100 chr2D 91.092 1740 110 17 887 2626 94868392 94870086 0.000000e+00 2313.0
23 TraesCS1A01G424100 chr2D 89.189 148 13 3 2622 2767 94870162 94870308 8.000000e-42 182.0
24 TraesCS1A01G424100 chr2D 79.783 277 30 13 550 812 94868099 94868363 1.030000e-40 178.0
25 TraesCS1A01G424100 chr2B 91.034 1740 109 13 887 2626 146716121 146717813 0.000000e+00 2305.0
26 TraesCS1A01G424100 chr2B 88.312 154 6 4 550 703 146715766 146715907 1.340000e-39 174.0
27 TraesCS1A01G424100 chr2B 88.525 61 6 1 3204 3263 522843688 522843748 5.020000e-09 73.1
28 TraesCS1A01G424100 chr2B 97.222 36 1 0 2739 2774 146718118 146718153 1.090000e-05 62.1
29 TraesCS1A01G424100 chr7D 78.172 930 177 23 1106 2028 478080283 478081193 1.460000e-158 569.0
30 TraesCS1A01G424100 chr7D 75.686 547 106 20 3066 3593 506797575 506797037 7.770000e-62 248.0
31 TraesCS1A01G424100 chr7D 95.556 45 2 0 846 890 462673296 462673252 5.020000e-09 73.1
32 TraesCS1A01G424100 chr7D 84.848 66 5 4 842 907 613714944 613714884 1.090000e-05 62.1
33 TraesCS1A01G424100 chr6D 91.707 410 33 1 1 410 56194360 56194768 5.250000e-158 568.0
34 TraesCS1A01G424100 chr6D 91.525 413 31 3 1 410 56205781 56206192 1.890000e-157 566.0
35 TraesCS1A01G424100 chr6D 87.619 420 20 14 419 812 56206252 56206665 3.300000e-125 459.0
36 TraesCS1A01G424100 chr6D 91.597 238 18 2 419 656 56194819 56195054 9.710000e-86 327.0
37 TraesCS1A01G424100 chr6D 94.231 52 2 1 656 707 56204871 56204921 1.080000e-10 78.7
38 TraesCS1A01G424100 chr6D 90.566 53 3 2 847 899 320198051 320198101 6.500000e-08 69.4
39 TraesCS1A01G424100 chr6D 96.875 32 1 0 813 844 56206684 56206715 2.000000e-03 54.7
40 TraesCS1A01G424100 chr3D 76.735 490 96 13 1270 1756 67631458 67630984 1.290000e-64 257.0
41 TraesCS1A01G424100 chr7B 75.000 556 95 28 3066 3605 741834093 741833566 2.190000e-52 217.0
42 TraesCS1A01G424100 chr7B 74.865 557 94 30 3066 3605 741805833 741805306 1.020000e-50 211.0
43 TraesCS1A01G424100 chr7B 77.431 288 49 12 3326 3605 721221707 721221986 1.350000e-34 158.0
44 TraesCS1A01G424100 chr7B 95.556 45 2 0 846 890 485833155 485833111 5.020000e-09 73.1
45 TraesCS1A01G424100 chrUn 74.865 557 94 30 3066 3605 383043706 383043179 1.020000e-50 211.0
46 TraesCS1A01G424100 chr5D 74.000 550 123 16 3068 3605 356618035 356617494 4.750000e-49 206.0
47 TraesCS1A01G424100 chr4B 78.621 290 54 8 3217 3502 6043129 6043414 6.180000e-43 185.0
48 TraesCS1A01G424100 chr2A 80.247 162 29 2 3424 3582 84206163 84206002 6.360000e-23 119.0
49 TraesCS1A01G424100 chr7A 95.833 48 2 0 842 889 93257200 93257153 1.080000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G424100 chr1A 579170978 579174603 3625 False 6697.000000 6697 100.000000 1 3626 1 chr1A.!!$F2 3625
1 TraesCS1A01G424100 chr1A 584806718 584809749 3031 True 1029.333333 2473 89.662333 419 3072 3 chr1A.!!$R2 2653
2 TraesCS1A01G424100 chr1D 487221766 487224334 2568 True 1353.500000 2392 90.155000 767 3072 2 chr1D.!!$R3 2305
3 TraesCS1A01G424100 chr1D 482990574 482994832 4258 True 1005.000000 3810 91.989400 419 3626 5 chr1D.!!$R2 3207
4 TraesCS1A01G424100 chr1D 427704408 427706672 2264 False 886.700000 2396 85.637333 767 2829 3 chr1D.!!$F1 2062
5 TraesCS1A01G424100 chr1D 26644483 26645028 545 True 222.000000 222 74.499000 3072 3605 1 chr1D.!!$R1 533
6 TraesCS1A01G424100 chr1B 678469395 678472686 3291 False 1410.500000 2601 86.169000 419 3073 2 chr1B.!!$F2 2654
7 TraesCS1A01G424100 chr1B 671257801 671260659 2858 False 1252.000000 2809 89.722333 1 2827 3 chr1B.!!$F1 2826
8 TraesCS1A01G424100 chr2D 94868099 94870308 2209 False 891.000000 2313 86.688000 550 2767 3 chr2D.!!$F1 2217
9 TraesCS1A01G424100 chr2B 146715766 146718153 2387 False 847.033333 2305 92.189333 550 2774 3 chr2B.!!$F2 2224
10 TraesCS1A01G424100 chr7D 478080283 478081193 910 False 569.000000 569 78.172000 1106 2028 1 chr7D.!!$F1 922
11 TraesCS1A01G424100 chr7D 506797037 506797575 538 True 248.000000 248 75.686000 3066 3593 1 chr7D.!!$R2 527
12 TraesCS1A01G424100 chr6D 56194360 56195054 694 False 447.500000 568 91.652000 1 656 2 chr6D.!!$F2 655
13 TraesCS1A01G424100 chr6D 56204871 56206715 1844 False 289.600000 566 92.562500 1 844 4 chr6D.!!$F3 843
14 TraesCS1A01G424100 chr7B 741833566 741834093 527 True 217.000000 217 75.000000 3066 3605 1 chr7B.!!$R3 539
15 TraesCS1A01G424100 chr7B 741805306 741805833 527 True 211.000000 211 74.865000 3066 3605 1 chr7B.!!$R2 539
16 TraesCS1A01G424100 chrUn 383043179 383043706 527 True 211.000000 211 74.865000 3066 3605 1 chrUn.!!$R1 539
17 TraesCS1A01G424100 chr5D 356617494 356618035 541 True 206.000000 206 74.000000 3068 3605 1 chr5D.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 1136 0.609662 GCCCATGTCAAGGTGCAAAT 59.390 50.0 0.00 0.0 0.00 2.32 F
852 2247 1.438651 TGATGCTTCAACTACCGCAC 58.561 50.0 0.00 0.0 34.93 5.34 F
2118 3758 0.608640 ACTACCTCAAGGCCAAGTCG 59.391 55.0 5.01 0.0 39.32 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 3305 0.962356 CCCATGGTGCTCCTGTTCAC 60.962 60.0 11.73 0.00 34.23 3.18 R
2379 4019 0.599558 TCGGGTTCTTGGACACGTAG 59.400 55.0 3.49 0.00 46.13 3.51 R
3327 5938 0.178955 TACCTATCCATTCCGGCCGA 60.179 55.0 30.73 8.21 33.14 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 1026 3.616956 TTTGCGAGAGATGAGGATGTT 57.383 42.857 0.00 0.00 0.00 2.71
120 1034 4.607239 AGAGATGAGGATGTTGGCAATTT 58.393 39.130 1.92 0.00 0.00 1.82
129 1043 2.234143 TGTTGGCAATTTGGTGATCGA 58.766 42.857 1.92 0.00 0.00 3.59
164 1078 2.277120 CTCGCGCTGCTGAAATGC 60.277 61.111 5.56 0.00 0.00 3.56
222 1136 0.609662 GCCCATGTCAAGGTGCAAAT 59.390 50.000 0.00 0.00 0.00 2.32
255 1169 2.027625 GGAGAACACGAACAGGCCG 61.028 63.158 0.00 0.00 0.00 6.13
315 1229 6.481954 GAATACAAGTTCGACCAACTCAAT 57.518 37.500 0.00 0.00 45.32 2.57
356 1271 4.777366 CCTATTGGGATTGTTGGGACTTTT 59.223 41.667 0.00 0.00 37.23 2.27
381 1296 8.865590 TTTTCACTTACTAAATCAACCAAAGC 57.134 30.769 0.00 0.00 0.00 3.51
410 1342 2.445492 ATTGGGGGCCCTGTTCTGTG 62.445 60.000 24.38 0.00 36.94 3.66
412 1344 3.256960 GGGGCCCTGTTCTGTGGA 61.257 66.667 24.38 0.00 0.00 4.02
414 1346 2.358737 GGCCCTGTTCTGTGGACG 60.359 66.667 0.00 0.00 0.00 4.79
417 1349 1.745890 CCCTGTTCTGTGGACGACA 59.254 57.895 0.00 0.00 0.00 4.35
422 1354 3.303990 CCTGTTCTGTGGACGACAATTTG 60.304 47.826 0.00 0.00 32.80 2.32
431 1424 3.057596 TGGACGACAATTTGGAAGAATGC 60.058 43.478 0.78 0.00 0.00 3.56
448 1441 8.897752 GGAAGAATGCTGAGTAATTGAGTTAAT 58.102 33.333 0.00 0.00 0.00 1.40
471 1464 7.751768 ATAAAAAGACCTCTCTCTGTTTTGG 57.248 36.000 0.00 0.00 31.34 3.28
474 1467 4.344359 AGACCTCTCTCTGTTTTGGTTC 57.656 45.455 0.00 0.00 0.00 3.62
516 1517 7.872138 AGAGATGTCCCTGTAATTTGGAATAA 58.128 34.615 0.00 0.00 0.00 1.40
687 1940 1.770658 CTGGGGATATGGAGCTTGACA 59.229 52.381 0.00 0.00 0.00 3.58
759 2095 7.203255 ACACTGTTCTTCTAATAACTTTGCC 57.797 36.000 0.00 0.00 0.00 4.52
779 2122 1.812571 CAAGTTGATTTCCTCCACCGG 59.187 52.381 0.00 0.00 0.00 5.28
852 2247 1.438651 TGATGCTTCAACTACCGCAC 58.561 50.000 0.00 0.00 34.93 5.34
855 2250 3.023591 GCTTCAACTACCGCACGGC 62.024 63.158 9.43 0.00 39.32 5.68
866 2262 2.321333 CGCACGGCACATGTGGTTA 61.321 57.895 26.55 0.00 0.00 2.85
885 2491 9.941325 TGTGGTTAGCAAAATCAAAATTCATAT 57.059 25.926 0.00 0.00 0.00 1.78
936 2543 3.258372 TGGTTGCCGCCTTCTATATAGAG 59.742 47.826 12.16 3.90 33.21 2.43
937 2544 3.258622 GGTTGCCGCCTTCTATATAGAGT 59.741 47.826 12.16 0.00 33.21 3.24
938 2545 4.461781 GGTTGCCGCCTTCTATATAGAGTA 59.538 45.833 12.16 0.00 33.21 2.59
950 2557 7.541122 TCTATATAGAGTAGTAGCACGCATG 57.459 40.000 8.44 0.00 0.00 4.06
960 2567 3.490759 CACGCATGTCCCGCTCAC 61.491 66.667 0.00 0.00 0.00 3.51
961 2568 4.002506 ACGCATGTCCCGCTCACA 62.003 61.111 0.00 0.00 0.00 3.58
962 2569 3.190849 CGCATGTCCCGCTCACAG 61.191 66.667 0.00 0.00 0.00 3.66
963 2570 2.821366 GCATGTCCCGCTCACAGG 60.821 66.667 0.00 0.00 0.00 4.00
981 2594 2.764314 GCAGCCATAGTTGCCACCG 61.764 63.158 0.00 0.00 43.84 4.94
1064 2691 1.614525 TCTGCTGCATCCTCTGGGT 60.615 57.895 1.31 0.00 0.00 4.51
1385 3024 2.357034 CGTCCACCTCCACAACCG 60.357 66.667 0.00 0.00 0.00 4.44
1632 3271 4.351938 TCCGCCGACAACGTCCTG 62.352 66.667 0.00 0.00 37.88 3.86
1917 3556 2.603075 ACCAGCAGGCTAATTTCCAA 57.397 45.000 0.00 0.00 39.06 3.53
1983 3622 4.521062 CGCTTCCCTGAGCTCGGG 62.521 72.222 31.73 31.73 43.38 5.14
2118 3758 0.608640 ACTACCTCAAGGCCAAGTCG 59.391 55.000 5.01 0.00 39.32 4.18
2170 3810 1.040646 GTGGGAGAGCATATGGACGA 58.959 55.000 4.56 0.00 0.00 4.20
2379 4019 1.139853 CTGTACAAGGAGATGGAGCCC 59.860 57.143 0.00 0.00 0.00 5.19
2397 4037 0.389426 CCTACGTGTCCAAGAACCCG 60.389 60.000 0.00 0.00 0.00 5.28
2403 4043 3.702048 TCCAAGAACCCGAGGGCG 61.702 66.667 8.33 0.00 39.32 6.13
2446 4086 1.153349 GACCTGGGGACGAATGAGC 60.153 63.158 0.00 0.00 0.00 4.26
2596 4236 0.692419 GAGCATCCCTCCTCTTCCCA 60.692 60.000 0.00 0.00 34.35 4.37
2610 4253 2.827322 TCTTCCCACTGCCAAAATGATG 59.173 45.455 0.00 0.00 0.00 3.07
2611 4254 2.601240 TCCCACTGCCAAAATGATGA 57.399 45.000 0.00 0.00 0.00 2.92
2612 4255 3.104519 TCCCACTGCCAAAATGATGAT 57.895 42.857 0.00 0.00 0.00 2.45
3270 5848 4.742649 TCTCCCTCTCGCCGCACT 62.743 66.667 0.00 0.00 0.00 4.40
3271 5849 4.504916 CTCCCTCTCGCCGCACTG 62.505 72.222 0.00 0.00 0.00 3.66
3344 5955 1.293498 CTCGGCCGGAATGGATAGG 59.707 63.158 27.83 0.00 42.00 2.57
3345 5956 1.458777 TCGGCCGGAATGGATAGGT 60.459 57.895 27.83 0.00 42.00 3.08
3346 5957 0.178955 TCGGCCGGAATGGATAGGTA 60.179 55.000 27.83 0.00 42.00 3.08
3350 5961 1.645710 CCGGAATGGATAGGTAGGCT 58.354 55.000 0.00 0.00 42.00 4.58
3352 5963 2.248248 CGGAATGGATAGGTAGGCTCA 58.752 52.381 0.00 0.00 0.00 4.26
3356 5967 4.534103 GGAATGGATAGGTAGGCTCATTCT 59.466 45.833 17.19 4.21 39.88 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 917 7.653767 GCGCCTAGCTAATTATAAGAAAAGA 57.346 36.000 0.00 0.00 44.04 2.52
53 967 7.229707 CGAGGACTTTCATCTTCCTATAAGAGA 59.770 40.741 0.00 0.00 40.02 3.10
58 972 4.833380 CCCGAGGACTTTCATCTTCCTATA 59.167 45.833 0.00 0.00 40.02 1.31
100 1014 3.449737 CCAAATTGCCAACATCCTCATCT 59.550 43.478 0.00 0.00 0.00 2.90
112 1026 1.539388 GTGTCGATCACCAAATTGCCA 59.461 47.619 6.82 0.00 40.84 4.92
164 1078 7.463544 TCATACATTAGCGAACAATTGTCTTG 58.536 34.615 12.39 5.95 0.00 3.02
222 1136 3.964688 TGTTCTCCTAGAATTATCCGCCA 59.035 43.478 0.00 0.00 36.50 5.69
230 1144 4.822026 CCTGTTCGTGTTCTCCTAGAATT 58.178 43.478 0.00 0.00 36.50 2.17
315 1229 1.195115 GGTGAGTGTGGCAGATCCTA 58.805 55.000 0.00 0.00 35.26 2.94
356 1271 8.691797 AGCTTTGGTTGATTTAGTAAGTGAAAA 58.308 29.630 0.00 0.00 0.00 2.29
377 1292 4.080582 GGCCCCCAATTTGTAATTAGCTTT 60.081 41.667 0.00 0.00 0.00 3.51
381 1296 3.387699 CAGGGCCCCCAATTTGTAATTAG 59.612 47.826 21.43 0.00 38.92 1.73
388 1303 0.545071 AGAACAGGGCCCCCAATTTG 60.545 55.000 21.43 12.09 38.92 2.32
410 1342 3.191371 AGCATTCTTCCAAATTGTCGTCC 59.809 43.478 0.00 0.00 0.00 4.79
412 1344 3.820467 TCAGCATTCTTCCAAATTGTCGT 59.180 39.130 0.00 0.00 0.00 4.34
414 1346 5.382618 ACTCAGCATTCTTCCAAATTGTC 57.617 39.130 0.00 0.00 0.00 3.18
417 1349 8.125978 TCAATTACTCAGCATTCTTCCAAATT 57.874 30.769 0.00 0.00 0.00 1.82
422 1354 6.749923 AACTCAATTACTCAGCATTCTTCC 57.250 37.500 0.00 0.00 0.00 3.46
448 1441 6.659824 ACCAAAACAGAGAGAGGTCTTTTTA 58.340 36.000 0.00 0.00 30.97 1.52
494 1495 7.881775 ACTTATTCCAAATTACAGGGACATC 57.118 36.000 0.00 0.00 0.00 3.06
495 1496 7.363793 GCAACTTATTCCAAATTACAGGGACAT 60.364 37.037 0.00 0.00 0.00 3.06
516 1517 5.554822 TTGAGTAACTTTTGTTCGCAACT 57.445 34.783 0.00 0.00 42.45 3.16
687 1940 4.225942 TGTCTAATCTTCACCTCCATTGCT 59.774 41.667 0.00 0.00 0.00 3.91
737 2071 7.502561 ACTTGGCAAAGTTATTAGAAGAACAGT 59.497 33.333 0.00 0.00 44.47 3.55
738 2072 7.875971 ACTTGGCAAAGTTATTAGAAGAACAG 58.124 34.615 0.00 0.00 44.47 3.16
759 2095 1.812571 CCGGTGGAGGAAATCAACTTG 59.187 52.381 0.00 0.00 31.79 3.16
779 2122 9.726232 ATAAGTTCCGTACAAGAAAAAGAAAAC 57.274 29.630 0.00 0.00 0.00 2.43
852 2247 0.595588 TTTGCTAACCACATGTGCCG 59.404 50.000 20.81 10.34 0.00 5.69
855 2250 6.841443 TTTTGATTTTGCTAACCACATGTG 57.159 33.333 19.31 19.31 0.00 3.21
912 2519 1.200519 TATAGAAGGCGGCAACCAGT 58.799 50.000 13.08 0.00 0.00 4.00
913 2520 2.550830 ATATAGAAGGCGGCAACCAG 57.449 50.000 13.08 0.00 0.00 4.00
914 2521 3.236047 TCTATATAGAAGGCGGCAACCA 58.764 45.455 13.08 0.00 0.00 3.67
915 2522 3.258622 ACTCTATATAGAAGGCGGCAACC 59.741 47.826 13.08 0.00 0.00 3.77
916 2523 4.522722 ACTCTATATAGAAGGCGGCAAC 57.477 45.455 13.08 4.34 0.00 4.17
936 2543 0.870307 CGGGACATGCGTGCTACTAC 60.870 60.000 5.64 0.00 33.21 2.73
937 2544 1.435925 CGGGACATGCGTGCTACTA 59.564 57.895 5.64 0.00 33.21 1.82
938 2545 2.184322 CGGGACATGCGTGCTACT 59.816 61.111 5.64 0.00 33.21 2.57
981 2594 1.302366 TGATTGATGGATGCACGAGC 58.698 50.000 0.00 0.00 42.57 5.03
1064 2691 2.292292 GCTAAAGAGGGCGTGTTTTGAA 59.708 45.455 13.53 0.00 0.00 2.69
1666 3305 0.962356 CCCATGGTGCTCCTGTTCAC 60.962 60.000 11.73 0.00 34.23 3.18
1822 3461 2.159517 GCCATTTGGTGATCAGTTCGAC 60.160 50.000 0.00 0.00 37.57 4.20
1983 3622 2.378028 GCAGTCTTGCTCCGTCATC 58.622 57.895 0.00 0.00 46.95 2.92
2340 3980 2.750657 CCCCCTGACCCAGCTCATC 61.751 68.421 0.00 0.00 0.00 2.92
2379 4019 0.599558 TCGGGTTCTTGGACACGTAG 59.400 55.000 3.49 0.00 46.13 3.51
2397 4037 1.735559 GTTGACGTACACCGCCCTC 60.736 63.158 0.00 0.00 41.42 4.30
2403 4043 1.888512 TCCCTGTAGTTGACGTACACC 59.111 52.381 0.00 0.00 0.00 4.16
2446 4086 2.428569 CGTCACGTCACCGTCCAG 60.429 66.667 0.00 0.00 46.28 3.86
2596 4236 6.131264 TGGAATCTATCATCATTTTGGCAGT 58.869 36.000 0.00 0.00 0.00 4.40
2783 4782 2.943033 AGCGCTTGTGTTTGTACTTTCT 59.057 40.909 2.64 0.00 0.00 2.52
2784 4783 3.334272 AGCGCTTGTGTTTGTACTTTC 57.666 42.857 2.64 0.00 0.00 2.62
3043 5618 5.682234 AGACATGGTAGTCACATTGATGA 57.318 39.130 0.00 0.00 40.98 2.92
3326 5937 1.293498 CCTATCCATTCCGGCCGAG 59.707 63.158 30.73 17.53 33.14 4.63
3327 5938 0.178955 TACCTATCCATTCCGGCCGA 60.179 55.000 30.73 8.21 33.14 5.54
3344 5955 1.414550 GGGGTGAGAGAATGAGCCTAC 59.585 57.143 0.00 0.00 0.00 3.18
3345 5956 1.794714 GGGGTGAGAGAATGAGCCTA 58.205 55.000 0.00 0.00 0.00 3.93
3346 5957 1.333636 CGGGGTGAGAGAATGAGCCT 61.334 60.000 0.00 0.00 0.00 4.58
3350 5961 2.721167 CGGCGGGGTGAGAGAATGA 61.721 63.158 0.00 0.00 0.00 2.57
3352 5963 3.470888 CCGGCGGGGTGAGAGAAT 61.471 66.667 20.56 0.00 0.00 2.40
3433 6346 1.354368 GGTGGGTCTTCTTGATTCCCA 59.646 52.381 0.00 0.00 44.76 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.