Multiple sequence alignment - TraesCS1A01G423900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G423900 chr1A 100.000 3642 0 0 1 3642 578932328 578935969 0.000000e+00 6726.0
1 TraesCS1A01G423900 chr1A 81.094 1079 198 6 1426 2501 578356423 578355348 0.000000e+00 857.0
2 TraesCS1A01G423900 chr1B 88.697 2088 174 29 1343 3380 670798788 670800863 0.000000e+00 2492.0
3 TraesCS1A01G423900 chr1B 89.297 981 75 9 341 1318 670797845 670798798 0.000000e+00 1203.0
4 TraesCS1A01G423900 chr1B 79.485 1399 270 11 1428 2821 670957314 670958700 0.000000e+00 977.0
5 TraesCS1A01G423900 chr1B 81.232 1071 195 5 1426 2493 670273898 670272831 0.000000e+00 859.0
6 TraesCS1A01G423900 chr1B 97.297 37 1 0 234 270 670795906 670795942 3.040000e-06 63.9
7 TraesCS1A01G423900 chr1B 100.000 28 0 0 3294 3321 327218432 327218459 7.000000e-03 52.8
8 TraesCS1A01G423900 chr1D 93.985 1596 76 11 1343 2929 482233246 482234830 0.000000e+00 2398.0
9 TraesCS1A01G423900 chr1D 86.233 1075 88 22 248 1318 482232238 482233256 0.000000e+00 1110.0
10 TraesCS1A01G423900 chr1D 81.369 1256 227 7 1426 2677 482370046 482371298 0.000000e+00 1016.0
11 TraesCS1A01G423900 chr1D 81.260 1254 227 8 1418 2667 482324176 482325425 0.000000e+00 1007.0
12 TraesCS1A01G423900 chr1D 93.246 459 25 3 2951 3409 482239126 482239578 0.000000e+00 671.0
13 TraesCS1A01G423900 chr1D 92.233 206 12 1 3441 3642 482240826 482241031 4.600000e-74 289.0
14 TraesCS1A01G423900 chrUn 81.688 1256 223 7 1426 2677 1927291 1928543 0.000000e+00 1038.0
15 TraesCS1A01G423900 chrUn 81.947 1130 200 4 1428 2555 1823901 1825028 0.000000e+00 953.0
16 TraesCS1A01G423900 chrUn 88.060 134 16 0 603 736 1823141 1823274 3.760000e-35 159.0
17 TraesCS1A01G423900 chr4D 86.765 68 8 1 155 221 335049374 335049307 1.400000e-09 75.0
18 TraesCS1A01G423900 chr4D 88.462 52 5 1 172 222 399221794 399221845 1.090000e-05 62.1
19 TraesCS1A01G423900 chr3B 85.333 75 8 3 150 222 118757542 118757615 1.400000e-09 75.0
20 TraesCS1A01G423900 chr2B 87.879 66 5 3 157 220 106957202 106957138 1.400000e-09 75.0
21 TraesCS1A01G423900 chr7D 89.286 56 4 2 159 213 397380795 397380849 6.530000e-08 69.4
22 TraesCS1A01G423900 chr5D 86.154 65 6 3 160 222 333557920 333557857 2.350000e-07 67.6
23 TraesCS1A01G423900 chr4B 93.478 46 2 1 156 200 1083807 1083852 2.350000e-07 67.6
24 TraesCS1A01G423900 chr4B 85.938 64 7 2 161 222 492761236 492761299 2.350000e-07 67.6
25 TraesCS1A01G423900 chr2A 88.235 51 5 1 172 222 78763573 78763622 3.930000e-05 60.2
26 TraesCS1A01G423900 chr3A 77.660 94 15 6 2708 2798 15076566 15076656 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G423900 chr1A 578932328 578935969 3641 False 6726.000000 6726 100.000000 1 3642 1 chr1A.!!$F1 3641
1 TraesCS1A01G423900 chr1A 578355348 578356423 1075 True 857.000000 857 81.094000 1426 2501 1 chr1A.!!$R1 1075
2 TraesCS1A01G423900 chr1B 670795906 670800863 4957 False 1252.966667 2492 91.763667 234 3380 3 chr1B.!!$F3 3146
3 TraesCS1A01G423900 chr1B 670957314 670958700 1386 False 977.000000 977 79.485000 1428 2821 1 chr1B.!!$F2 1393
4 TraesCS1A01G423900 chr1B 670272831 670273898 1067 True 859.000000 859 81.232000 1426 2493 1 chr1B.!!$R1 1067
5 TraesCS1A01G423900 chr1D 482232238 482234830 2592 False 1754.000000 2398 90.109000 248 2929 2 chr1D.!!$F3 2681
6 TraesCS1A01G423900 chr1D 482370046 482371298 1252 False 1016.000000 1016 81.369000 1426 2677 1 chr1D.!!$F2 1251
7 TraesCS1A01G423900 chr1D 482324176 482325425 1249 False 1007.000000 1007 81.260000 1418 2667 1 chr1D.!!$F1 1249
8 TraesCS1A01G423900 chr1D 482239126 482241031 1905 False 480.000000 671 92.739500 2951 3642 2 chr1D.!!$F4 691
9 TraesCS1A01G423900 chrUn 1927291 1928543 1252 False 1038.000000 1038 81.688000 1426 2677 1 chrUn.!!$F1 1251
10 TraesCS1A01G423900 chrUn 1823141 1825028 1887 False 556.000000 953 85.003500 603 2555 2 chrUn.!!$F2 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.034089 CCATCCAGGTTCAAGTCCCC 60.034 60.0 0.0 0.0 0.00 4.81 F
1041 2923 0.106167 CGTGGAGATCCCTGGTAGGA 60.106 60.0 0.0 0.0 37.67 2.94 F
1546 3431 0.035317 AAGCGATGCTGTGGAAGACA 59.965 50.0 0.0 0.0 39.62 3.41 F
2044 3929 0.474854 TCTACCAAAGGCTCCCCACA 60.475 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 3294 0.388659 TGCATGCCCACACTTTTGTC 59.611 50.000 16.68 0.0 31.66 3.18 R
2328 4213 0.608856 TGACAACCCGACCGCTAGTA 60.609 55.000 0.00 0.0 0.00 1.82 R
2513 4398 0.915364 GGGATGGAGAGGTTGAGCTT 59.085 55.000 0.00 0.0 0.00 3.74 R
3437 6608 1.262950 TGTTGTTCTTCGCATCAACGG 59.737 47.619 0.00 0.0 41.74 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.964476 AACATTTTCACGTATCTCAATATCCT 57.036 30.769 0.00 0.00 0.00 3.24
34 35 8.964476 ACATTTTCACGTATCTCAATATCCTT 57.036 30.769 0.00 0.00 0.00 3.36
35 36 8.830580 ACATTTTCACGTATCTCAATATCCTTG 58.169 33.333 0.00 0.00 0.00 3.61
36 37 7.786178 TTTTCACGTATCTCAATATCCTTGG 57.214 36.000 0.00 0.00 0.00 3.61
37 38 6.479972 TTCACGTATCTCAATATCCTTGGT 57.520 37.500 0.00 0.00 0.00 3.67
38 39 7.591421 TTCACGTATCTCAATATCCTTGGTA 57.409 36.000 0.00 0.00 0.00 3.25
39 40 7.776618 TCACGTATCTCAATATCCTTGGTAT 57.223 36.000 0.00 0.00 0.00 2.73
40 41 7.827701 TCACGTATCTCAATATCCTTGGTATC 58.172 38.462 0.00 0.00 0.00 2.24
41 42 6.747739 CACGTATCTCAATATCCTTGGTATCG 59.252 42.308 0.00 0.00 0.00 2.92
42 43 6.657966 ACGTATCTCAATATCCTTGGTATCGA 59.342 38.462 0.00 0.00 0.00 3.59
43 44 7.339721 ACGTATCTCAATATCCTTGGTATCGAT 59.660 37.037 2.16 2.16 0.00 3.59
44 45 7.645735 CGTATCTCAATATCCTTGGTATCGATG 59.354 40.741 8.54 0.00 0.00 3.84
45 46 7.724490 ATCTCAATATCCTTGGTATCGATGA 57.276 36.000 8.54 0.00 0.00 2.92
46 47 7.163001 TCTCAATATCCTTGGTATCGATGAG 57.837 40.000 8.54 2.79 33.61 2.90
47 48 6.948309 TCTCAATATCCTTGGTATCGATGAGA 59.052 38.462 8.54 5.31 37.74 3.27
48 49 7.451566 TCTCAATATCCTTGGTATCGATGAGAA 59.548 37.037 8.54 0.00 37.29 2.87
49 50 8.138928 TCAATATCCTTGGTATCGATGAGAAT 57.861 34.615 8.54 0.00 0.00 2.40
50 51 8.597167 TCAATATCCTTGGTATCGATGAGAATT 58.403 33.333 8.54 0.00 0.00 2.17
51 52 9.875691 CAATATCCTTGGTATCGATGAGAATTA 57.124 33.333 8.54 0.00 0.00 1.40
55 56 8.833231 TCCTTGGTATCGATGAGAATTAAATC 57.167 34.615 8.54 0.00 0.00 2.17
56 57 8.651389 TCCTTGGTATCGATGAGAATTAAATCT 58.349 33.333 8.54 0.00 0.00 2.40
57 58 8.930760 CCTTGGTATCGATGAGAATTAAATCTC 58.069 37.037 12.80 12.80 44.96 2.75
68 69 7.313951 GAGAATTAAATCTCACTTGACCAGG 57.686 40.000 14.47 0.00 44.29 4.45
69 70 7.020827 AGAATTAAATCTCACTTGACCAGGA 57.979 36.000 0.00 0.00 0.00 3.86
70 71 7.461749 AGAATTAAATCTCACTTGACCAGGAA 58.538 34.615 0.00 0.00 0.00 3.36
71 72 8.112183 AGAATTAAATCTCACTTGACCAGGAAT 58.888 33.333 0.00 0.00 0.00 3.01
72 73 7.636150 ATTAAATCTCACTTGACCAGGAATG 57.364 36.000 0.00 0.00 0.00 2.67
73 74 4.916041 AATCTCACTTGACCAGGAATGA 57.084 40.909 0.00 0.00 0.00 2.57
74 75 4.916041 ATCTCACTTGACCAGGAATGAA 57.084 40.909 0.00 0.00 0.00 2.57
75 76 4.008074 TCTCACTTGACCAGGAATGAAC 57.992 45.455 0.00 0.00 0.00 3.18
76 77 3.390967 TCTCACTTGACCAGGAATGAACA 59.609 43.478 0.00 0.00 0.00 3.18
77 78 4.136796 CTCACTTGACCAGGAATGAACAA 58.863 43.478 0.00 0.00 0.00 2.83
78 79 4.531854 TCACTTGACCAGGAATGAACAAA 58.468 39.130 0.00 0.00 0.00 2.83
79 80 5.139727 TCACTTGACCAGGAATGAACAAAT 58.860 37.500 0.00 0.00 0.00 2.32
80 81 5.598005 TCACTTGACCAGGAATGAACAAATT 59.402 36.000 0.00 0.00 0.00 1.82
81 82 5.922544 CACTTGACCAGGAATGAACAAATTC 59.077 40.000 0.00 0.00 36.08 2.17
82 83 4.764679 TGACCAGGAATGAACAAATTCG 57.235 40.909 0.00 0.00 37.42 3.34
83 84 4.141287 TGACCAGGAATGAACAAATTCGT 58.859 39.130 0.00 0.00 37.42 3.85
84 85 5.309638 TGACCAGGAATGAACAAATTCGTA 58.690 37.500 0.00 0.00 37.42 3.43
85 86 5.411361 TGACCAGGAATGAACAAATTCGTAG 59.589 40.000 0.00 0.00 37.42 3.51
86 87 5.556915 ACCAGGAATGAACAAATTCGTAGA 58.443 37.500 0.00 0.00 37.42 2.59
87 88 6.001460 ACCAGGAATGAACAAATTCGTAGAA 58.999 36.000 0.00 0.00 45.90 2.10
88 89 6.072673 ACCAGGAATGAACAAATTCGTAGAAC 60.073 38.462 0.00 0.00 45.90 3.01
89 90 6.072728 CCAGGAATGAACAAATTCGTAGAACA 60.073 38.462 0.00 0.00 45.90 3.18
90 91 7.362056 CCAGGAATGAACAAATTCGTAGAACAT 60.362 37.037 0.00 0.00 45.90 2.71
91 92 8.023128 CAGGAATGAACAAATTCGTAGAACATT 58.977 33.333 0.00 0.00 45.90 2.71
92 93 8.237267 AGGAATGAACAAATTCGTAGAACATTC 58.763 33.333 0.00 0.00 45.90 2.67
93 94 8.020819 GGAATGAACAAATTCGTAGAACATTCA 58.979 33.333 2.87 10.47 45.90 2.57
94 95 8.728088 AATGAACAAATTCGTAGAACATTCAC 57.272 30.769 0.00 0.00 45.90 3.18
95 96 7.252965 TGAACAAATTCGTAGAACATTCACA 57.747 32.000 0.00 0.00 45.90 3.58
96 97 7.870826 TGAACAAATTCGTAGAACATTCACAT 58.129 30.769 0.00 0.00 45.90 3.21
97 98 7.802720 TGAACAAATTCGTAGAACATTCACATG 59.197 33.333 0.00 0.00 45.90 3.21
98 99 7.433708 ACAAATTCGTAGAACATTCACATGA 57.566 32.000 0.00 0.00 45.90 3.07
99 100 8.044060 ACAAATTCGTAGAACATTCACATGAT 57.956 30.769 0.00 0.00 45.90 2.45
100 101 7.964559 ACAAATTCGTAGAACATTCACATGATG 59.035 33.333 0.00 0.00 45.90 3.07
101 102 6.609237 ATTCGTAGAACATTCACATGATGG 57.391 37.500 0.00 0.00 45.90 3.51
102 103 4.441792 TCGTAGAACATTCACATGATGGG 58.558 43.478 0.00 0.00 34.11 4.00
103 104 4.161377 TCGTAGAACATTCACATGATGGGA 59.839 41.667 0.00 0.00 34.11 4.37
104 105 4.875536 CGTAGAACATTCACATGATGGGAA 59.124 41.667 13.11 13.11 44.82 3.97
115 116 4.676109 ACATGATGGGAATGTGAAAAGGA 58.324 39.130 0.00 0.00 36.89 3.36
116 117 5.085920 ACATGATGGGAATGTGAAAAGGAA 58.914 37.500 0.00 0.00 36.89 3.36
117 118 5.543405 ACATGATGGGAATGTGAAAAGGAAA 59.457 36.000 0.00 0.00 36.89 3.13
118 119 5.467035 TGATGGGAATGTGAAAAGGAAAC 57.533 39.130 0.00 0.00 0.00 2.78
119 120 4.898265 TGATGGGAATGTGAAAAGGAAACA 59.102 37.500 0.00 0.00 0.00 2.83
120 121 5.543405 TGATGGGAATGTGAAAAGGAAACAT 59.457 36.000 0.00 0.00 36.10 2.71
121 122 6.723515 TGATGGGAATGTGAAAAGGAAACATA 59.276 34.615 0.00 0.00 33.48 2.29
122 123 6.985653 TGGGAATGTGAAAAGGAAACATAA 57.014 33.333 0.00 0.00 33.48 1.90
123 124 7.366847 TGGGAATGTGAAAAGGAAACATAAA 57.633 32.000 0.00 0.00 33.48 1.40
124 125 7.796054 TGGGAATGTGAAAAGGAAACATAAAA 58.204 30.769 0.00 0.00 33.48 1.52
125 126 7.930865 TGGGAATGTGAAAAGGAAACATAAAAG 59.069 33.333 0.00 0.00 33.48 2.27
126 127 7.387673 GGGAATGTGAAAAGGAAACATAAAAGG 59.612 37.037 0.00 0.00 33.48 3.11
127 128 7.931407 GGAATGTGAAAAGGAAACATAAAAGGT 59.069 33.333 0.00 0.00 33.48 3.50
128 129 9.325198 GAATGTGAAAAGGAAACATAAAAGGTT 57.675 29.630 0.00 0.00 33.48 3.50
129 130 8.661352 ATGTGAAAAGGAAACATAAAAGGTTG 57.339 30.769 0.00 0.00 32.86 3.77
130 131 7.841956 TGTGAAAAGGAAACATAAAAGGTTGA 58.158 30.769 0.00 0.00 0.00 3.18
131 132 8.482128 TGTGAAAAGGAAACATAAAAGGTTGAT 58.518 29.630 0.00 0.00 0.00 2.57
132 133 9.325198 GTGAAAAGGAAACATAAAAGGTTGATT 57.675 29.630 0.00 0.00 0.00 2.57
133 134 9.898152 TGAAAAGGAAACATAAAAGGTTGATTT 57.102 25.926 0.00 0.00 0.00 2.17
135 136 9.679661 AAAAGGAAACATAAAAGGTTGATTTGT 57.320 25.926 0.00 0.00 0.00 2.83
136 137 9.679661 AAAGGAAACATAAAAGGTTGATTTGTT 57.320 25.926 0.00 0.00 0.00 2.83
137 138 9.679661 AAGGAAACATAAAAGGTTGATTTGTTT 57.320 25.926 0.00 0.00 0.00 2.83
138 139 9.108284 AGGAAACATAAAAGGTTGATTTGTTTG 57.892 29.630 3.17 0.00 0.00 2.93
139 140 8.888716 GGAAACATAAAAGGTTGATTTGTTTGT 58.111 29.630 3.17 0.00 0.00 2.83
140 141 9.914923 GAAACATAAAAGGTTGATTTGTTTGTC 57.085 29.630 3.17 0.00 0.00 3.18
141 142 9.442047 AAACATAAAAGGTTGATTTGTTTGTCA 57.558 25.926 0.00 0.00 0.00 3.58
142 143 9.612066 AACATAAAAGGTTGATTTGTTTGTCAT 57.388 25.926 0.00 0.00 0.00 3.06
149 150 9.787532 AAGGTTGATTTGTTTGTCATATAATCG 57.212 29.630 0.00 0.00 0.00 3.34
150 151 9.173021 AGGTTGATTTGTTTGTCATATAATCGA 57.827 29.630 0.00 0.00 0.00 3.59
151 152 9.781834 GGTTGATTTGTTTGTCATATAATCGAA 57.218 29.630 0.00 0.00 0.00 3.71
159 160 9.849166 TGTTTGTCATATAATCGAATATAGCGA 57.151 29.630 6.39 3.48 42.48 4.93
163 164 9.503427 TGTCATATAATCGAATATAGCGAACTG 57.497 33.333 6.39 0.00 41.52 3.16
164 165 9.717892 GTCATATAATCGAATATAGCGAACTGA 57.282 33.333 6.39 1.86 41.52 3.41
165 166 9.937175 TCATATAATCGAATATAGCGAACTGAG 57.063 33.333 6.39 0.00 41.52 3.35
166 167 9.723447 CATATAATCGAATATAGCGAACTGAGT 57.277 33.333 6.39 0.00 41.52 3.41
167 168 9.723447 ATATAATCGAATATAGCGAACTGAGTG 57.277 33.333 6.39 0.00 41.52 3.51
168 169 4.895224 TCGAATATAGCGAACTGAGTGT 57.105 40.909 0.00 0.00 34.45 3.55
169 170 5.996669 TCGAATATAGCGAACTGAGTGTA 57.003 39.130 0.00 0.00 34.45 2.90
170 171 5.986936 TCGAATATAGCGAACTGAGTGTAG 58.013 41.667 0.00 0.00 34.45 2.74
171 172 5.526479 TCGAATATAGCGAACTGAGTGTAGT 59.474 40.000 0.00 0.00 34.45 2.73
172 173 5.846994 CGAATATAGCGAACTGAGTGTAGTC 59.153 44.000 0.00 0.00 0.00 2.59
173 174 6.511282 CGAATATAGCGAACTGAGTGTAGTCA 60.511 42.308 0.00 0.00 0.00 3.41
175 176 2.505405 AGCGAACTGAGTGTAGTCAGA 58.495 47.619 20.43 0.00 46.02 3.27
176 177 3.085533 AGCGAACTGAGTGTAGTCAGAT 58.914 45.455 20.43 10.78 46.02 2.90
177 178 3.119673 AGCGAACTGAGTGTAGTCAGATG 60.120 47.826 20.43 11.51 46.02 2.90
178 179 3.763902 CGAACTGAGTGTAGTCAGATGG 58.236 50.000 20.43 8.67 46.02 3.51
179 180 3.191581 CGAACTGAGTGTAGTCAGATGGT 59.808 47.826 20.43 5.53 46.02 3.55
180 181 4.321304 CGAACTGAGTGTAGTCAGATGGTT 60.321 45.833 20.43 7.52 46.02 3.67
181 182 5.106277 CGAACTGAGTGTAGTCAGATGGTTA 60.106 44.000 20.43 0.00 46.02 2.85
182 183 5.906113 ACTGAGTGTAGTCAGATGGTTAG 57.094 43.478 20.43 0.00 46.02 2.34
183 184 4.707448 ACTGAGTGTAGTCAGATGGTTAGG 59.293 45.833 20.43 0.00 46.02 2.69
184 185 4.673968 TGAGTGTAGTCAGATGGTTAGGT 58.326 43.478 0.00 0.00 0.00 3.08
185 186 5.084519 TGAGTGTAGTCAGATGGTTAGGTT 58.915 41.667 0.00 0.00 0.00 3.50
186 187 5.542635 TGAGTGTAGTCAGATGGTTAGGTTT 59.457 40.000 0.00 0.00 0.00 3.27
187 188 6.038997 AGTGTAGTCAGATGGTTAGGTTTC 57.961 41.667 0.00 0.00 0.00 2.78
188 189 5.780793 AGTGTAGTCAGATGGTTAGGTTTCT 59.219 40.000 0.00 0.00 0.00 2.52
189 190 6.270231 AGTGTAGTCAGATGGTTAGGTTTCTT 59.730 38.462 0.00 0.00 0.00 2.52
190 191 6.369065 GTGTAGTCAGATGGTTAGGTTTCTTG 59.631 42.308 0.00 0.00 0.00 3.02
191 192 5.568620 AGTCAGATGGTTAGGTTTCTTGT 57.431 39.130 0.00 0.00 0.00 3.16
192 193 5.308825 AGTCAGATGGTTAGGTTTCTTGTG 58.691 41.667 0.00 0.00 0.00 3.33
193 194 4.455877 GTCAGATGGTTAGGTTTCTTGTGG 59.544 45.833 0.00 0.00 0.00 4.17
194 195 4.104102 TCAGATGGTTAGGTTTCTTGTGGT 59.896 41.667 0.00 0.00 0.00 4.16
195 196 4.216257 CAGATGGTTAGGTTTCTTGTGGTG 59.784 45.833 0.00 0.00 0.00 4.17
196 197 2.938838 TGGTTAGGTTTCTTGTGGTGG 58.061 47.619 0.00 0.00 0.00 4.61
197 198 2.510382 TGGTTAGGTTTCTTGTGGTGGA 59.490 45.455 0.00 0.00 0.00 4.02
198 199 3.053544 TGGTTAGGTTTCTTGTGGTGGAA 60.054 43.478 0.00 0.00 0.00 3.53
199 200 3.317149 GGTTAGGTTTCTTGTGGTGGAAC 59.683 47.826 0.00 0.00 0.00 3.62
200 201 4.204799 GTTAGGTTTCTTGTGGTGGAACT 58.795 43.478 0.00 0.00 36.74 3.01
201 202 5.370679 GTTAGGTTTCTTGTGGTGGAACTA 58.629 41.667 0.00 0.00 36.74 2.24
202 203 4.086706 AGGTTTCTTGTGGTGGAACTAG 57.913 45.455 0.00 0.00 36.74 2.57
203 204 3.458487 AGGTTTCTTGTGGTGGAACTAGT 59.542 43.478 0.00 0.00 36.74 2.57
204 205 3.813724 GGTTTCTTGTGGTGGAACTAGTC 59.186 47.826 0.00 0.00 36.74 2.59
215 216 3.545366 GGAACTAGTCCATCCAGGTTC 57.455 52.381 7.14 0.00 46.97 3.62
216 217 2.838202 GGAACTAGTCCATCCAGGTTCA 59.162 50.000 7.14 0.00 46.97 3.18
217 218 3.263425 GGAACTAGTCCATCCAGGTTCAA 59.737 47.826 7.14 0.00 46.97 2.69
218 219 4.508662 GAACTAGTCCATCCAGGTTCAAG 58.491 47.826 0.00 0.00 39.02 3.02
219 220 3.521727 ACTAGTCCATCCAGGTTCAAGT 58.478 45.455 0.00 0.00 39.02 3.16
220 221 3.515901 ACTAGTCCATCCAGGTTCAAGTC 59.484 47.826 0.00 0.00 39.02 3.01
221 222 1.630878 AGTCCATCCAGGTTCAAGTCC 59.369 52.381 0.00 0.00 39.02 3.85
222 223 0.991920 TCCATCCAGGTTCAAGTCCC 59.008 55.000 0.00 0.00 39.02 4.46
223 224 0.034089 CCATCCAGGTTCAAGTCCCC 60.034 60.000 0.00 0.00 0.00 4.81
224 225 0.995024 CATCCAGGTTCAAGTCCCCT 59.005 55.000 0.00 0.00 0.00 4.79
225 226 2.196595 CATCCAGGTTCAAGTCCCCTA 58.803 52.381 0.00 0.00 0.00 3.53
226 227 2.661176 TCCAGGTTCAAGTCCCCTAT 57.339 50.000 0.00 0.00 0.00 2.57
227 228 2.196595 TCCAGGTTCAAGTCCCCTATG 58.803 52.381 0.00 0.00 0.00 2.23
228 229 1.408822 CCAGGTTCAAGTCCCCTATGC 60.409 57.143 0.00 0.00 0.00 3.14
229 230 1.561542 CAGGTTCAAGTCCCCTATGCT 59.438 52.381 0.00 0.00 0.00 3.79
230 231 2.025887 CAGGTTCAAGTCCCCTATGCTT 60.026 50.000 0.00 0.00 0.00 3.91
231 232 3.199946 CAGGTTCAAGTCCCCTATGCTTA 59.800 47.826 0.00 0.00 0.00 3.09
232 233 3.456277 AGGTTCAAGTCCCCTATGCTTAG 59.544 47.826 0.00 0.00 0.00 2.18
240 241 1.605712 CCCCTATGCTTAGCACGTAGC 60.606 57.143 9.82 0.98 43.04 3.58
275 276 5.982465 TTTGCTTCAAATTTTAGGTGTGC 57.018 34.783 0.00 0.00 0.00 4.57
278 279 3.552068 GCTTCAAATTTTAGGTGTGCCGT 60.552 43.478 0.00 0.00 40.50 5.68
280 281 5.365403 TTCAAATTTTAGGTGTGCCGTAG 57.635 39.130 0.00 0.00 40.50 3.51
281 282 3.189702 TCAAATTTTAGGTGTGCCGTAGC 59.810 43.478 0.00 0.00 40.50 3.58
282 283 2.781681 ATTTTAGGTGTGCCGTAGCT 57.218 45.000 0.00 0.00 40.80 3.32
283 284 3.899052 ATTTTAGGTGTGCCGTAGCTA 57.101 42.857 0.00 0.00 40.80 3.32
285 286 0.458669 TTAGGTGTGCCGTAGCTAGC 59.541 55.000 6.62 6.62 40.80 3.42
290 291 3.900892 TGCCGTAGCTAGCTCCGC 61.901 66.667 23.26 20.47 40.80 5.54
293 294 2.565645 CCGTAGCTAGCTCCGCCAT 61.566 63.158 23.26 0.00 0.00 4.40
305 312 2.746472 GCTCCGCCATTAAGGATGAGTT 60.746 50.000 0.00 0.00 41.22 3.01
320 327 8.718102 AAGGATGAGTTTATGTGTGTATGTAC 57.282 34.615 0.00 0.00 0.00 2.90
321 328 6.978659 AGGATGAGTTTATGTGTGTATGTACG 59.021 38.462 0.00 0.00 0.00 3.67
322 329 6.976349 GGATGAGTTTATGTGTGTATGTACGA 59.024 38.462 0.00 0.00 0.00 3.43
325 332 6.804783 TGAGTTTATGTGTGTATGTACGAGTG 59.195 38.462 0.00 0.00 0.00 3.51
327 334 7.819644 AGTTTATGTGTGTATGTACGAGTGTA 58.180 34.615 0.00 0.00 0.00 2.90
329 336 8.529102 GTTTATGTGTGTATGTACGAGTGTATG 58.471 37.037 0.00 0.00 32.11 2.39
331 338 4.082679 TGTGTGTATGTACGAGTGTATGCA 60.083 41.667 0.00 0.00 32.11 3.96
334 341 6.035650 GTGTGTATGTACGAGTGTATGCATTT 59.964 38.462 3.54 0.00 32.11 2.32
335 342 6.035542 TGTGTATGTACGAGTGTATGCATTTG 59.964 38.462 3.54 0.00 32.11 2.32
337 344 7.221259 GTGTATGTACGAGTGTATGCATTTGTA 59.779 37.037 3.54 2.80 32.24 2.41
339 346 7.786178 ATGTACGAGTGTATGCATTTGTATT 57.214 32.000 3.54 0.00 34.89 1.89
349 2203 8.759641 GTGTATGCATTTGTATTGTGTTTGAAA 58.240 29.630 3.54 0.00 0.00 2.69
415 2269 0.319083 ATGCGTGGAACCTTCGTACA 59.681 50.000 0.00 0.00 0.00 2.90
448 2302 2.359850 ATGTGATTGCCGGCGTGT 60.360 55.556 23.90 10.20 0.00 4.49
449 2303 2.689785 ATGTGATTGCCGGCGTGTG 61.690 57.895 23.90 0.00 0.00 3.82
553 2408 1.292223 CATCCACGACGAACCACCT 59.708 57.895 0.00 0.00 0.00 4.00
561 2416 2.046892 CGAACCACCTCCTGCTGG 60.047 66.667 2.58 2.58 0.00 4.85
575 2430 1.226945 GCTGGCAGCGTTGTGTTTT 60.227 52.632 25.47 0.00 0.00 2.43
581 2436 1.469917 CAGCGTTGTGTTTTGCTCTG 58.530 50.000 0.00 0.00 34.99 3.35
594 2449 4.613929 CTCTGGAGAGCTTGTGCC 57.386 61.111 0.00 0.00 40.80 5.01
595 2450 1.447489 CTCTGGAGAGCTTGTGCCG 60.447 63.158 0.00 0.00 40.80 5.69
596 2451 1.881903 CTCTGGAGAGCTTGTGCCGA 61.882 60.000 0.00 0.00 40.80 5.54
597 2452 1.739562 CTGGAGAGCTTGTGCCGAC 60.740 63.158 0.00 0.00 40.80 4.79
598 2453 2.811317 GGAGAGCTTGTGCCGACG 60.811 66.667 0.00 0.00 40.80 5.12
599 2454 2.811317 GAGAGCTTGTGCCGACGG 60.811 66.667 10.29 10.29 40.80 4.79
600 2455 3.575351 GAGAGCTTGTGCCGACGGT 62.575 63.158 16.73 0.00 40.80 4.83
601 2456 3.112709 GAGCTTGTGCCGACGGTC 61.113 66.667 16.73 8.54 40.80 4.79
641 2496 1.900351 CCATGGCGTCCAGAGAGAA 59.100 57.895 0.00 0.00 36.75 2.87
654 2509 3.640498 CCAGAGAGAACAGCATCCAGATA 59.360 47.826 0.00 0.00 0.00 1.98
712 2567 3.181967 CGGAGCCGCTTCTCGTTG 61.182 66.667 0.00 0.00 36.19 4.10
761 2616 0.813210 GAGCTAGCTCATGCCGCTTT 60.813 55.000 34.70 1.83 43.36 3.51
882 2752 1.227946 GTCGGGGCTCTACCTCTCT 59.772 63.158 0.00 0.00 36.36 3.10
909 2779 4.680237 CTTGGCCTGCCGACGTCA 62.680 66.667 17.16 0.00 39.42 4.35
982 2855 2.037121 TCAAAGCTCGAAGGTCACATCA 59.963 45.455 0.00 0.00 0.00 3.07
984 2857 1.261480 AGCTCGAAGGTCACATCACT 58.739 50.000 0.00 0.00 0.00 3.41
1041 2923 0.106167 CGTGGAGATCCCTGGTAGGA 60.106 60.000 0.00 0.00 37.67 2.94
1104 2986 2.046314 CTGGACCGCCGGTTTGAT 60.046 61.111 11.54 0.00 35.25 2.57
1218 3100 4.171103 GCGCCCAATACCTCCGGT 62.171 66.667 0.00 0.00 40.16 5.28
1244 3126 2.559668 ACACCGACGAGGAAAACATAGA 59.440 45.455 8.56 0.00 45.00 1.98
1245 3127 3.006110 ACACCGACGAGGAAAACATAGAA 59.994 43.478 8.56 0.00 45.00 2.10
1248 3130 3.368116 CCGACGAGGAAAACATAGAACCT 60.368 47.826 0.00 0.00 45.00 3.50
1295 3177 4.531426 AGGCCCCGAGCTCGAGAT 62.531 66.667 36.59 10.84 43.02 2.75
1311 3193 3.584406 TCGAGATCCTTCGGGTAGGTATA 59.416 47.826 4.72 0.00 40.83 1.47
1327 3209 5.291905 AGGTATACCACATAAACCTCTGC 57.708 43.478 23.87 0.00 35.67 4.26
1328 3210 4.719773 AGGTATACCACATAAACCTCTGCA 59.280 41.667 23.87 0.00 35.67 4.41
1329 3211 4.814771 GGTATACCACATAAACCTCTGCAC 59.185 45.833 17.44 0.00 35.64 4.57
1330 3212 2.949177 ACCACATAAACCTCTGCACA 57.051 45.000 0.00 0.00 0.00 4.57
1331 3213 3.439857 ACCACATAAACCTCTGCACAT 57.560 42.857 0.00 0.00 0.00 3.21
1332 3214 4.568072 ACCACATAAACCTCTGCACATA 57.432 40.909 0.00 0.00 0.00 2.29
1333 3215 4.917385 ACCACATAAACCTCTGCACATAA 58.083 39.130 0.00 0.00 0.00 1.90
1334 3216 5.321102 ACCACATAAACCTCTGCACATAAA 58.679 37.500 0.00 0.00 0.00 1.40
1335 3217 5.183140 ACCACATAAACCTCTGCACATAAAC 59.817 40.000 0.00 0.00 0.00 2.01
1336 3218 5.393027 CCACATAAACCTCTGCACATAAACC 60.393 44.000 0.00 0.00 0.00 3.27
1337 3219 4.394920 ACATAAACCTCTGCACATAAACCG 59.605 41.667 0.00 0.00 0.00 4.44
1338 3220 2.561478 AACCTCTGCACATAAACCGT 57.439 45.000 0.00 0.00 0.00 4.83
1339 3221 1.808411 ACCTCTGCACATAAACCGTG 58.192 50.000 0.00 0.00 37.43 4.94
1347 3229 3.313274 CACATAAACCGTGCCGTATTC 57.687 47.619 0.00 0.00 0.00 1.75
1348 3230 2.031191 CACATAAACCGTGCCGTATTCC 59.969 50.000 0.00 0.00 0.00 3.01
1349 3231 1.259507 CATAAACCGTGCCGTATTCCG 59.740 52.381 0.00 0.00 0.00 4.30
1350 3232 1.083242 TAAACCGTGCCGTATTCCGC 61.083 55.000 0.00 0.00 34.38 5.54
1351 3233 3.592856 AACCGTGCCGTATTCCGCA 62.593 57.895 0.00 0.00 34.38 5.69
1352 3234 2.587753 CCGTGCCGTATTCCGCAT 60.588 61.111 0.00 0.00 34.38 4.73
1353 3235 2.177580 CCGTGCCGTATTCCGCATT 61.178 57.895 0.00 0.00 34.38 3.56
1354 3236 1.275657 CGTGCCGTATTCCGCATTC 59.724 57.895 0.00 0.00 34.38 2.67
1355 3237 1.647084 GTGCCGTATTCCGCATTCC 59.353 57.895 0.00 0.00 34.38 3.01
1373 3255 5.512232 GCATTCCACCCAAATTTTCACCTTA 60.512 40.000 0.00 0.00 0.00 2.69
1409 3294 3.132160 CAAGCATCATAGCCAGTCTCTG 58.868 50.000 0.00 0.00 34.23 3.35
1414 3299 4.763073 CATCATAGCCAGTCTCTGACAAA 58.237 43.478 0.46 0.00 34.60 2.83
1422 3307 2.874701 CAGTCTCTGACAAAAGTGTGGG 59.125 50.000 0.46 0.00 38.41 4.61
1546 3431 0.035317 AAGCGATGCTGTGGAAGACA 59.965 50.000 0.00 0.00 39.62 3.41
1993 3878 0.802494 TTTTCTTCTTCGCCATCGGC 59.198 50.000 0.00 0.00 46.75 5.54
2020 3905 4.655027 CGCACTATGTTGTACTCTTCGTA 58.345 43.478 0.00 0.00 0.00 3.43
2044 3929 0.474854 TCTACCAAAGGCTCCCCACA 60.475 55.000 0.00 0.00 0.00 4.17
2092 3977 7.631933 TCCACCCGGTATTTTTCTTCTTTATA 58.368 34.615 0.00 0.00 0.00 0.98
2152 4037 1.445410 CGGCGAGTTCAACGATGGA 60.445 57.895 0.00 0.00 0.00 3.41
2328 4213 1.094785 GACAATGTGCTAATGCGGGT 58.905 50.000 0.00 0.00 43.34 5.28
2377 4262 0.960286 TTGTCACGATCACCGGTGTA 59.040 50.000 32.74 20.21 43.93 2.90
2434 4319 6.183347 CAAAGACCTCTTCCCTAATGATGTT 58.817 40.000 0.00 0.00 34.61 2.71
2477 4362 2.105766 GGCCCAAAATCAGCAAGATCT 58.894 47.619 0.00 0.00 35.39 2.75
2513 4398 3.621558 TCTTCTAGCTCGGACATCAAGA 58.378 45.455 0.00 0.00 0.00 3.02
2601 4486 3.073798 TGTTCCAACTCCAGGATAAGCAA 59.926 43.478 0.00 0.00 34.56 3.91
2869 4764 9.793259 ATAAGTATGTATTTTCATTCACCGGAT 57.207 29.630 9.46 0.00 0.00 4.18
2915 4810 1.402968 CCAATGTATGGCTGAGTGTGC 59.597 52.381 0.00 0.00 43.80 4.57
2939 4834 2.278026 TGCACGATATATGCCTAGCG 57.722 50.000 8.56 0.00 42.69 4.26
2956 4851 6.426937 TGCCTAGCGGTCTTATTTCATATTTC 59.573 38.462 0.00 0.00 0.00 2.17
2963 4879 7.113965 GCGGTCTTATTTCATATTTCATTGCAG 59.886 37.037 0.00 0.00 0.00 4.41
3015 4932 8.448615 GGTACTACAAAATAAACAGGCAAGTAG 58.551 37.037 0.00 0.00 34.26 2.57
3112 5029 5.613358 AAGAATTGGCAACTTAAGACTCG 57.387 39.130 10.09 0.00 37.61 4.18
3359 5300 4.074970 AGAACAAACAGCTATGGACAAGG 58.925 43.478 0.00 0.00 0.00 3.61
3368 5309 7.321717 ACAGCTATGGACAAGGAATATACAT 57.678 36.000 0.00 0.00 0.00 2.29
3369 5310 7.749666 ACAGCTATGGACAAGGAATATACATT 58.250 34.615 0.00 0.00 0.00 2.71
3390 5331 8.710835 ACATTAACAACAAACCTTTTTACCAG 57.289 30.769 0.00 0.00 0.00 4.00
3431 6602 6.484540 AGTAGTACTGTTGATATCGTTGACG 58.515 40.000 5.39 0.00 41.45 4.35
3432 6603 5.306532 AGTACTGTTGATATCGTTGACGT 57.693 39.130 0.00 0.00 40.80 4.34
3433 6604 6.426980 AGTACTGTTGATATCGTTGACGTA 57.573 37.500 0.00 0.00 40.80 3.57
3434 6605 6.253746 AGTACTGTTGATATCGTTGACGTAC 58.746 40.000 0.00 10.08 40.80 3.67
3435 6606 5.306532 ACTGTTGATATCGTTGACGTACT 57.693 39.130 3.25 0.00 40.80 2.73
3436 6607 5.706916 ACTGTTGATATCGTTGACGTACTT 58.293 37.500 3.25 0.00 40.80 2.24
3437 6608 5.798934 ACTGTTGATATCGTTGACGTACTTC 59.201 40.000 3.25 0.00 40.80 3.01
3438 6609 5.097529 TGTTGATATCGTTGACGTACTTCC 58.902 41.667 3.25 0.00 40.80 3.46
3439 6610 3.943958 TGATATCGTTGACGTACTTCCG 58.056 45.455 3.25 0.00 40.80 4.30
3440 6611 3.374988 TGATATCGTTGACGTACTTCCGT 59.625 43.478 3.25 0.00 45.18 4.69
3441 6612 2.712057 ATCGTTGACGTACTTCCGTT 57.288 45.000 3.25 0.00 41.98 4.44
3442 6613 1.757574 TCGTTGACGTACTTCCGTTG 58.242 50.000 3.25 0.00 41.98 4.10
3443 6614 1.333308 TCGTTGACGTACTTCCGTTGA 59.667 47.619 3.25 0.00 41.98 3.18
3444 6615 2.030893 TCGTTGACGTACTTCCGTTGAT 60.031 45.455 3.25 0.00 41.98 2.57
3471 6642 5.192327 AGAACAACAAAATCTTGCTCCAG 57.808 39.130 0.00 0.00 35.84 3.86
3534 6705 1.185618 TGCTCGTCCCTGCTACTTGT 61.186 55.000 0.00 0.00 0.00 3.16
3538 6709 2.952978 CTCGTCCCTGCTACTTGTCTAT 59.047 50.000 0.00 0.00 0.00 1.98
3544 6715 5.127356 GTCCCTGCTACTTGTCTATGTTAGT 59.873 44.000 0.00 0.00 0.00 2.24
3588 6763 9.577110 TCTACGTTAGTTTCAGTAATTGTATGG 57.423 33.333 0.00 0.00 0.00 2.74
3611 6786 3.123273 AGGCTACCCCACATGAATAGTT 58.877 45.455 0.00 0.00 35.39 2.24
3619 6794 5.104652 ACCCCACATGAATAGTTACACTACC 60.105 44.000 0.00 0.00 32.84 3.18
3631 6806 1.056660 ACACTACCCCACAAGGACAG 58.943 55.000 0.00 0.00 38.24 3.51
3637 6812 2.478292 ACCCCACAAGGACAGGTATAG 58.522 52.381 0.00 0.00 38.24 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.396022 AGGATATTGAGATACGTGAAAATGTTT 57.604 29.630 0.00 0.00 0.00 2.83
8 9 8.964476 AGGATATTGAGATACGTGAAAATGTT 57.036 30.769 0.00 0.00 0.00 2.71
9 10 8.830580 CAAGGATATTGAGATACGTGAAAATGT 58.169 33.333 0.00 0.00 0.00 2.71
10 11 8.285394 CCAAGGATATTGAGATACGTGAAAATG 58.715 37.037 0.00 0.00 0.00 2.32
11 12 7.993183 ACCAAGGATATTGAGATACGTGAAAAT 59.007 33.333 0.00 0.00 0.00 1.82
12 13 7.335627 ACCAAGGATATTGAGATACGTGAAAA 58.664 34.615 0.00 0.00 0.00 2.29
13 14 6.884832 ACCAAGGATATTGAGATACGTGAAA 58.115 36.000 0.00 0.00 0.00 2.69
14 15 6.479972 ACCAAGGATATTGAGATACGTGAA 57.520 37.500 0.00 0.00 0.00 3.18
15 16 7.361799 CGATACCAAGGATATTGAGATACGTGA 60.362 40.741 0.00 0.00 0.00 4.35
16 17 6.747739 CGATACCAAGGATATTGAGATACGTG 59.252 42.308 0.00 0.00 0.00 4.49
17 18 6.657966 TCGATACCAAGGATATTGAGATACGT 59.342 38.462 0.00 0.00 0.00 3.57
18 19 7.085052 TCGATACCAAGGATATTGAGATACG 57.915 40.000 0.00 0.00 0.00 3.06
19 20 8.687242 TCATCGATACCAAGGATATTGAGATAC 58.313 37.037 0.00 0.00 0.00 2.24
20 21 8.823220 TCATCGATACCAAGGATATTGAGATA 57.177 34.615 0.00 0.00 0.00 1.98
21 22 7.617329 TCTCATCGATACCAAGGATATTGAGAT 59.383 37.037 0.00 0.00 0.00 2.75
22 23 6.948309 TCTCATCGATACCAAGGATATTGAGA 59.052 38.462 0.00 0.00 0.00 3.27
23 24 7.163001 TCTCATCGATACCAAGGATATTGAG 57.837 40.000 0.00 0.00 0.00 3.02
24 25 7.539034 TTCTCATCGATACCAAGGATATTGA 57.461 36.000 0.00 0.00 0.00 2.57
25 26 8.783833 AATTCTCATCGATACCAAGGATATTG 57.216 34.615 0.00 0.00 0.00 1.90
29 30 9.442047 GATTTAATTCTCATCGATACCAAGGAT 57.558 33.333 0.00 0.00 0.00 3.24
30 31 8.651389 AGATTTAATTCTCATCGATACCAAGGA 58.349 33.333 0.00 0.00 0.00 3.36
31 32 8.839310 AGATTTAATTCTCATCGATACCAAGG 57.161 34.615 0.00 0.00 0.00 3.61
32 33 9.481340 TGAGATTTAATTCTCATCGATACCAAG 57.519 33.333 20.81 0.00 45.49 3.61
44 45 7.106239 TCCTGGTCAAGTGAGATTTAATTCTC 58.894 38.462 16.91 16.91 42.10 2.87
45 46 7.020827 TCCTGGTCAAGTGAGATTTAATTCT 57.979 36.000 0.00 0.00 0.00 2.40
46 47 7.687941 TTCCTGGTCAAGTGAGATTTAATTC 57.312 36.000 0.00 0.00 0.00 2.17
47 48 7.890127 TCATTCCTGGTCAAGTGAGATTTAATT 59.110 33.333 0.00 0.00 0.00 1.40
48 49 7.405292 TCATTCCTGGTCAAGTGAGATTTAAT 58.595 34.615 0.00 0.00 0.00 1.40
49 50 6.778821 TCATTCCTGGTCAAGTGAGATTTAA 58.221 36.000 0.00 0.00 0.00 1.52
50 51 6.373005 TCATTCCTGGTCAAGTGAGATTTA 57.627 37.500 0.00 0.00 0.00 1.40
51 52 5.246981 TCATTCCTGGTCAAGTGAGATTT 57.753 39.130 0.00 0.00 0.00 2.17
52 53 4.916041 TCATTCCTGGTCAAGTGAGATT 57.084 40.909 0.00 0.00 0.00 2.40
53 54 4.042062 TGTTCATTCCTGGTCAAGTGAGAT 59.958 41.667 0.00 0.00 0.00 2.75
54 55 3.390967 TGTTCATTCCTGGTCAAGTGAGA 59.609 43.478 0.00 0.00 0.00 3.27
55 56 3.743521 TGTTCATTCCTGGTCAAGTGAG 58.256 45.455 0.00 0.00 0.00 3.51
56 57 3.855255 TGTTCATTCCTGGTCAAGTGA 57.145 42.857 0.00 0.00 0.00 3.41
57 58 4.916983 TTTGTTCATTCCTGGTCAAGTG 57.083 40.909 0.00 0.00 0.00 3.16
58 59 5.278463 CGAATTTGTTCATTCCTGGTCAAGT 60.278 40.000 0.00 0.00 30.38 3.16
59 60 5.156355 CGAATTTGTTCATTCCTGGTCAAG 58.844 41.667 0.00 0.00 30.38 3.02
60 61 4.582656 ACGAATTTGTTCATTCCTGGTCAA 59.417 37.500 0.00 0.00 30.38 3.18
61 62 4.141287 ACGAATTTGTTCATTCCTGGTCA 58.859 39.130 0.00 0.00 30.38 4.02
62 63 4.766404 ACGAATTTGTTCATTCCTGGTC 57.234 40.909 0.00 0.00 30.38 4.02
63 64 5.556915 TCTACGAATTTGTTCATTCCTGGT 58.443 37.500 3.03 0.00 30.38 4.00
64 65 6.072728 TGTTCTACGAATTTGTTCATTCCTGG 60.073 38.462 3.03 0.00 30.38 4.45
65 66 6.898041 TGTTCTACGAATTTGTTCATTCCTG 58.102 36.000 3.03 0.00 30.38 3.86
66 67 7.687941 ATGTTCTACGAATTTGTTCATTCCT 57.312 32.000 3.03 0.00 30.38 3.36
67 68 8.020819 TGAATGTTCTACGAATTTGTTCATTCC 58.979 33.333 23.71 15.44 38.31 3.01
68 69 8.840867 GTGAATGTTCTACGAATTTGTTCATTC 58.159 33.333 22.07 22.07 39.02 2.67
69 70 8.349245 TGTGAATGTTCTACGAATTTGTTCATT 58.651 29.630 3.03 9.88 0.00 2.57
70 71 7.870826 TGTGAATGTTCTACGAATTTGTTCAT 58.129 30.769 3.03 2.39 0.00 2.57
71 72 7.252965 TGTGAATGTTCTACGAATTTGTTCA 57.747 32.000 3.03 0.00 0.00 3.18
72 73 8.015087 TCATGTGAATGTTCTACGAATTTGTTC 58.985 33.333 3.03 0.00 0.00 3.18
73 74 7.870826 TCATGTGAATGTTCTACGAATTTGTT 58.129 30.769 3.03 0.00 0.00 2.83
74 75 7.433708 TCATGTGAATGTTCTACGAATTTGT 57.566 32.000 3.29 3.29 0.00 2.83
75 76 7.430211 CCATCATGTGAATGTTCTACGAATTTG 59.570 37.037 0.00 0.00 0.00 2.32
76 77 7.415541 CCCATCATGTGAATGTTCTACGAATTT 60.416 37.037 0.00 0.00 0.00 1.82
77 78 6.038603 CCCATCATGTGAATGTTCTACGAATT 59.961 38.462 0.00 0.00 0.00 2.17
78 79 5.528690 CCCATCATGTGAATGTTCTACGAAT 59.471 40.000 0.00 0.00 0.00 3.34
79 80 4.875536 CCCATCATGTGAATGTTCTACGAA 59.124 41.667 0.00 0.00 0.00 3.85
80 81 4.161377 TCCCATCATGTGAATGTTCTACGA 59.839 41.667 0.00 0.00 0.00 3.43
81 82 4.441792 TCCCATCATGTGAATGTTCTACG 58.558 43.478 0.00 0.00 0.00 3.51
82 83 6.732154 CATTCCCATCATGTGAATGTTCTAC 58.268 40.000 13.21 0.00 40.14 2.59
83 84 6.947644 CATTCCCATCATGTGAATGTTCTA 57.052 37.500 13.21 0.00 40.14 2.10
84 85 5.847111 CATTCCCATCATGTGAATGTTCT 57.153 39.130 13.21 0.00 40.14 3.01
93 94 4.676109 TCCTTTTCACATTCCCATCATGT 58.324 39.130 0.00 0.00 35.10 3.21
94 95 5.664294 TTCCTTTTCACATTCCCATCATG 57.336 39.130 0.00 0.00 0.00 3.07
95 96 5.543405 TGTTTCCTTTTCACATTCCCATCAT 59.457 36.000 0.00 0.00 0.00 2.45
96 97 4.898265 TGTTTCCTTTTCACATTCCCATCA 59.102 37.500 0.00 0.00 0.00 3.07
97 98 5.467035 TGTTTCCTTTTCACATTCCCATC 57.533 39.130 0.00 0.00 0.00 3.51
98 99 7.552050 TTATGTTTCCTTTTCACATTCCCAT 57.448 32.000 0.00 0.00 33.19 4.00
99 100 6.985653 TTATGTTTCCTTTTCACATTCCCA 57.014 33.333 0.00 0.00 33.19 4.37
100 101 7.387673 CCTTTTATGTTTCCTTTTCACATTCCC 59.612 37.037 0.00 0.00 33.19 3.97
101 102 7.931407 ACCTTTTATGTTTCCTTTTCACATTCC 59.069 33.333 0.00 0.00 33.19 3.01
102 103 8.887036 ACCTTTTATGTTTCCTTTTCACATTC 57.113 30.769 0.00 0.00 33.19 2.67
103 104 9.108284 CAACCTTTTATGTTTCCTTTTCACATT 57.892 29.630 0.00 0.00 33.19 2.71
104 105 8.482128 TCAACCTTTTATGTTTCCTTTTCACAT 58.518 29.630 0.00 0.00 35.33 3.21
105 106 7.841956 TCAACCTTTTATGTTTCCTTTTCACA 58.158 30.769 0.00 0.00 0.00 3.58
106 107 8.887036 ATCAACCTTTTATGTTTCCTTTTCAC 57.113 30.769 0.00 0.00 0.00 3.18
107 108 9.898152 AAATCAACCTTTTATGTTTCCTTTTCA 57.102 25.926 0.00 0.00 0.00 2.69
109 110 9.679661 ACAAATCAACCTTTTATGTTTCCTTTT 57.320 25.926 0.00 0.00 0.00 2.27
110 111 9.679661 AACAAATCAACCTTTTATGTTTCCTTT 57.320 25.926 0.00 0.00 0.00 3.11
111 112 9.679661 AAACAAATCAACCTTTTATGTTTCCTT 57.320 25.926 0.00 0.00 35.31 3.36
112 113 9.108284 CAAACAAATCAACCTTTTATGTTTCCT 57.892 29.630 0.00 0.00 37.40 3.36
113 114 8.888716 ACAAACAAATCAACCTTTTATGTTTCC 58.111 29.630 0.00 0.00 37.40 3.13
114 115 9.914923 GACAAACAAATCAACCTTTTATGTTTC 57.085 29.630 0.00 0.00 37.40 2.78
115 116 9.442047 TGACAAACAAATCAACCTTTTATGTTT 57.558 25.926 0.00 0.00 39.36 2.83
116 117 9.612066 ATGACAAACAAATCAACCTTTTATGTT 57.388 25.926 0.00 0.00 0.00 2.71
123 124 9.787532 CGATTATATGACAAACAAATCAACCTT 57.212 29.630 0.00 0.00 0.00 3.50
124 125 9.173021 TCGATTATATGACAAACAAATCAACCT 57.827 29.630 0.00 0.00 0.00 3.50
125 126 9.781834 TTCGATTATATGACAAACAAATCAACC 57.218 29.630 0.00 0.00 0.00 3.77
133 134 9.849166 TCGCTATATTCGATTATATGACAAACA 57.151 29.630 7.34 0.00 0.00 2.83
137 138 9.503427 CAGTTCGCTATATTCGATTATATGACA 57.497 33.333 7.34 0.00 35.75 3.58
138 139 9.717892 TCAGTTCGCTATATTCGATTATATGAC 57.282 33.333 7.34 5.18 35.75 3.06
139 140 9.937175 CTCAGTTCGCTATATTCGATTATATGA 57.063 33.333 7.34 6.67 35.75 2.15
140 141 9.723447 ACTCAGTTCGCTATATTCGATTATATG 57.277 33.333 7.34 4.69 35.75 1.78
141 142 9.723447 CACTCAGTTCGCTATATTCGATTATAT 57.277 33.333 7.34 1.95 35.75 0.86
142 143 8.727910 ACACTCAGTTCGCTATATTCGATTATA 58.272 33.333 6.81 6.81 35.75 0.98
143 144 7.594714 ACACTCAGTTCGCTATATTCGATTAT 58.405 34.615 5.27 5.27 35.75 1.28
144 145 6.967135 ACACTCAGTTCGCTATATTCGATTA 58.033 36.000 0.00 0.00 35.75 1.75
145 146 5.833082 ACACTCAGTTCGCTATATTCGATT 58.167 37.500 0.00 0.00 35.75 3.34
146 147 5.440234 ACACTCAGTTCGCTATATTCGAT 57.560 39.130 0.00 0.00 35.75 3.59
147 148 4.895224 ACACTCAGTTCGCTATATTCGA 57.105 40.909 0.00 0.00 0.00 3.71
148 149 5.749620 ACTACACTCAGTTCGCTATATTCG 58.250 41.667 0.00 0.00 0.00 3.34
149 150 6.726230 TGACTACACTCAGTTCGCTATATTC 58.274 40.000 0.00 0.00 0.00 1.75
150 151 6.542735 TCTGACTACACTCAGTTCGCTATATT 59.457 38.462 0.00 0.00 39.08 1.28
151 152 6.056236 TCTGACTACACTCAGTTCGCTATAT 58.944 40.000 0.00 0.00 39.08 0.86
152 153 5.425630 TCTGACTACACTCAGTTCGCTATA 58.574 41.667 0.00 0.00 39.08 1.31
153 154 4.262617 TCTGACTACACTCAGTTCGCTAT 58.737 43.478 0.00 0.00 39.08 2.97
154 155 3.671716 TCTGACTACACTCAGTTCGCTA 58.328 45.455 0.00 0.00 39.08 4.26
155 156 2.505405 TCTGACTACACTCAGTTCGCT 58.495 47.619 0.00 0.00 39.08 4.93
156 157 2.991434 TCTGACTACACTCAGTTCGC 57.009 50.000 0.00 0.00 39.08 4.70
157 158 3.191581 ACCATCTGACTACACTCAGTTCG 59.808 47.826 0.00 0.00 39.08 3.95
158 159 4.792521 ACCATCTGACTACACTCAGTTC 57.207 45.455 0.00 0.00 39.08 3.01
159 160 5.186021 CCTAACCATCTGACTACACTCAGTT 59.814 44.000 0.00 0.00 39.08 3.16
160 161 4.707448 CCTAACCATCTGACTACACTCAGT 59.293 45.833 0.00 0.00 39.08 3.41
161 162 4.707448 ACCTAACCATCTGACTACACTCAG 59.293 45.833 0.00 0.00 39.35 3.35
162 163 4.673968 ACCTAACCATCTGACTACACTCA 58.326 43.478 0.00 0.00 0.00 3.41
163 164 5.662674 AACCTAACCATCTGACTACACTC 57.337 43.478 0.00 0.00 0.00 3.51
164 165 5.780793 AGAAACCTAACCATCTGACTACACT 59.219 40.000 0.00 0.00 0.00 3.55
165 166 6.038997 AGAAACCTAACCATCTGACTACAC 57.961 41.667 0.00 0.00 0.00 2.90
166 167 6.042781 ACAAGAAACCTAACCATCTGACTACA 59.957 38.462 0.00 0.00 0.00 2.74
167 168 6.369065 CACAAGAAACCTAACCATCTGACTAC 59.631 42.308 0.00 0.00 0.00 2.73
168 169 6.464222 CACAAGAAACCTAACCATCTGACTA 58.536 40.000 0.00 0.00 0.00 2.59
169 170 5.308825 CACAAGAAACCTAACCATCTGACT 58.691 41.667 0.00 0.00 0.00 3.41
170 171 4.455877 CCACAAGAAACCTAACCATCTGAC 59.544 45.833 0.00 0.00 0.00 3.51
171 172 4.104102 ACCACAAGAAACCTAACCATCTGA 59.896 41.667 0.00 0.00 0.00 3.27
172 173 4.216257 CACCACAAGAAACCTAACCATCTG 59.784 45.833 0.00 0.00 0.00 2.90
173 174 4.398319 CACCACAAGAAACCTAACCATCT 58.602 43.478 0.00 0.00 0.00 2.90
174 175 3.506067 CCACCACAAGAAACCTAACCATC 59.494 47.826 0.00 0.00 0.00 3.51
175 176 3.139397 TCCACCACAAGAAACCTAACCAT 59.861 43.478 0.00 0.00 0.00 3.55
176 177 2.510382 TCCACCACAAGAAACCTAACCA 59.490 45.455 0.00 0.00 0.00 3.67
177 178 3.217681 TCCACCACAAGAAACCTAACC 57.782 47.619 0.00 0.00 0.00 2.85
178 179 4.204799 AGTTCCACCACAAGAAACCTAAC 58.795 43.478 0.00 0.00 0.00 2.34
179 180 4.513406 AGTTCCACCACAAGAAACCTAA 57.487 40.909 0.00 0.00 0.00 2.69
180 181 4.657039 ACTAGTTCCACCACAAGAAACCTA 59.343 41.667 0.00 0.00 0.00 3.08
181 182 3.458487 ACTAGTTCCACCACAAGAAACCT 59.542 43.478 0.00 0.00 0.00 3.50
182 183 3.813724 GACTAGTTCCACCACAAGAAACC 59.186 47.826 0.00 0.00 0.00 3.27
183 184 3.813724 GGACTAGTTCCACCACAAGAAAC 59.186 47.826 0.00 0.00 45.10 2.78
184 185 4.081322 GGACTAGTTCCACCACAAGAAA 57.919 45.455 0.00 0.00 45.10 2.52
185 186 3.764237 GGACTAGTTCCACCACAAGAA 57.236 47.619 0.00 0.00 45.10 2.52
195 196 2.838202 TGAACCTGGATGGACTAGTTCC 59.162 50.000 0.00 5.28 46.13 3.62
196 197 4.020128 ACTTGAACCTGGATGGACTAGTTC 60.020 45.833 0.00 0.00 39.71 3.01
197 198 3.910627 ACTTGAACCTGGATGGACTAGTT 59.089 43.478 0.00 0.00 39.71 2.24
198 199 3.515901 GACTTGAACCTGGATGGACTAGT 59.484 47.826 0.00 0.00 39.71 2.57
199 200 3.118592 GGACTTGAACCTGGATGGACTAG 60.119 52.174 0.00 0.00 39.71 2.57
200 201 2.838202 GGACTTGAACCTGGATGGACTA 59.162 50.000 0.00 0.00 39.71 2.59
201 202 1.630878 GGACTTGAACCTGGATGGACT 59.369 52.381 0.00 0.00 39.71 3.85
202 203 1.340114 GGGACTTGAACCTGGATGGAC 60.340 57.143 0.00 0.00 39.71 4.02
203 204 0.991920 GGGACTTGAACCTGGATGGA 59.008 55.000 0.00 0.00 39.71 3.41
204 205 0.034089 GGGGACTTGAACCTGGATGG 60.034 60.000 0.00 0.00 42.93 3.51
205 206 0.995024 AGGGGACTTGAACCTGGATG 59.005 55.000 0.00 0.00 37.44 3.51
206 207 2.661176 TAGGGGACTTGAACCTGGAT 57.339 50.000 0.00 0.00 43.67 3.41
207 208 2.196595 CATAGGGGACTTGAACCTGGA 58.803 52.381 0.00 0.00 43.67 3.86
208 209 1.408822 GCATAGGGGACTTGAACCTGG 60.409 57.143 0.00 0.00 43.67 4.45
209 210 1.561542 AGCATAGGGGACTTGAACCTG 59.438 52.381 0.00 0.00 43.67 4.00
210 211 1.972588 AGCATAGGGGACTTGAACCT 58.027 50.000 0.00 0.00 43.67 3.50
211 212 2.808906 AAGCATAGGGGACTTGAACC 57.191 50.000 0.00 0.00 43.67 3.62
212 213 3.206964 GCTAAGCATAGGGGACTTGAAC 58.793 50.000 0.00 0.00 43.67 3.18
213 214 2.843730 TGCTAAGCATAGGGGACTTGAA 59.156 45.455 0.00 0.00 36.07 2.69
214 215 2.170607 GTGCTAAGCATAGGGGACTTGA 59.829 50.000 0.00 0.00 41.91 3.02
215 216 2.565841 GTGCTAAGCATAGGGGACTTG 58.434 52.381 0.00 0.00 41.91 3.16
216 217 1.139058 CGTGCTAAGCATAGGGGACTT 59.861 52.381 0.00 0.00 41.91 3.01
217 218 0.753262 CGTGCTAAGCATAGGGGACT 59.247 55.000 0.00 0.00 41.91 3.85
218 219 0.464452 ACGTGCTAAGCATAGGGGAC 59.536 55.000 0.00 0.00 41.91 4.46
219 220 1.961394 CTACGTGCTAAGCATAGGGGA 59.039 52.381 0.00 0.00 41.91 4.81
220 221 1.605712 GCTACGTGCTAAGCATAGGGG 60.606 57.143 0.00 0.00 41.91 4.79
221 222 1.784525 GCTACGTGCTAAGCATAGGG 58.215 55.000 0.00 0.00 41.91 3.53
227 228 9.317370 ATACACTAGTACAGCTACGTGCTAAGC 62.317 44.444 11.31 6.09 40.98 3.09
228 229 6.018098 ATACACTAGTACAGCTACGTGCTAAG 60.018 42.308 11.31 4.55 40.98 2.18
229 230 5.819379 ATACACTAGTACAGCTACGTGCTAA 59.181 40.000 11.31 2.28 40.98 3.09
230 231 5.363101 ATACACTAGTACAGCTACGTGCTA 58.637 41.667 11.31 2.74 40.98 3.49
231 232 4.197750 ATACACTAGTACAGCTACGTGCT 58.802 43.478 0.00 1.96 41.76 4.40
232 233 2.915738 ACACTAGTACAGCTACGTGC 57.084 50.000 0.00 0.00 43.29 5.34
285 286 2.918712 ACTCATCCTTAATGGCGGAG 57.081 50.000 0.00 0.00 39.79 4.63
290 291 7.630242 ACACACATAAACTCATCCTTAATGG 57.370 36.000 0.00 0.00 35.94 3.16
305 312 6.693978 GCATACACTCGTACATACACACATAA 59.306 38.462 0.00 0.00 0.00 1.90
320 327 5.868257 ACACAATACAAATGCATACACTCG 58.132 37.500 0.00 0.00 0.00 4.18
321 328 7.807433 TCAAACACAATACAAATGCATACACTC 59.193 33.333 0.00 0.00 0.00 3.51
322 329 7.656412 TCAAACACAATACAAATGCATACACT 58.344 30.769 0.00 0.00 0.00 3.55
327 334 9.107177 TCTTTTTCAAACACAATACAAATGCAT 57.893 25.926 0.00 0.00 0.00 3.96
329 336 9.766277 TTTCTTTTTCAAACACAATACAAATGC 57.234 25.926 0.00 0.00 0.00 3.56
415 2269 3.136443 ATCACATGGATGGGAACACGTAT 59.864 43.478 0.00 0.00 44.50 3.06
427 2281 2.188829 CGCCGGCAATCACATGGAT 61.189 57.895 28.98 0.00 38.05 3.41
449 2303 1.369091 AATCGATCCGTGCAAGTGGC 61.369 55.000 0.00 0.00 45.13 5.01
553 2408 4.254709 ACAACGCTGCCAGCAGGA 62.255 61.111 18.21 0.00 42.58 3.86
561 2416 0.248621 AGAGCAAAACACAACGCTGC 60.249 50.000 0.00 0.00 34.12 5.25
581 2436 2.811317 CGTCGGCACAAGCTCTCC 60.811 66.667 0.00 0.00 41.70 3.71
590 2445 3.429141 TCTCTCGACCGTCGGCAC 61.429 66.667 20.35 5.03 40.88 5.01
591 2446 3.429141 GTCTCTCGACCGTCGGCA 61.429 66.667 20.35 6.80 40.88 5.69
592 2447 3.384014 CTGTCTCTCGACCGTCGGC 62.384 68.421 20.35 3.23 40.88 5.54
593 2448 2.751913 CCTGTCTCTCGACCGTCGG 61.752 68.421 20.35 10.48 40.88 4.79
594 2449 2.751913 CCCTGTCTCTCGACCGTCG 61.752 68.421 14.94 14.94 42.10 5.12
595 2450 1.370587 CTCCCTGTCTCTCGACCGTC 61.371 65.000 0.00 0.00 39.47 4.79
596 2451 1.377463 CTCCCTGTCTCTCGACCGT 60.377 63.158 0.00 0.00 39.47 4.83
597 2452 1.078356 TCTCCCTGTCTCTCGACCG 60.078 63.158 0.00 0.00 39.47 4.79
598 2453 0.034863 ACTCTCCCTGTCTCTCGACC 60.035 60.000 0.00 0.00 39.47 4.79
599 2454 1.470890 CAACTCTCCCTGTCTCTCGAC 59.529 57.143 0.00 0.00 40.64 4.20
600 2455 1.074084 ACAACTCTCCCTGTCTCTCGA 59.926 52.381 0.00 0.00 0.00 4.04
601 2456 1.540267 ACAACTCTCCCTGTCTCTCG 58.460 55.000 0.00 0.00 0.00 4.04
641 2496 0.763652 CCCTGCTATCTGGATGCTGT 59.236 55.000 0.00 0.00 33.56 4.40
654 2509 2.683933 CCGTCCAGTACCCCTGCT 60.684 66.667 0.00 0.00 40.06 4.24
761 2616 0.609681 AACGGCGGCCTCCATAAAAA 60.610 50.000 18.34 0.00 0.00 1.94
765 2620 3.379865 GACAACGGCGGCCTCCATA 62.380 63.158 18.34 0.00 0.00 2.74
898 2768 3.554692 GCGGATTGACGTCGGCAG 61.555 66.667 11.62 4.61 42.14 4.85
1027 2903 1.152440 CGCCTCCTACCAGGGATCT 60.152 63.158 0.00 0.00 35.59 2.75
1104 2986 1.618837 CCCGAGAAGGTCTTGAAGTGA 59.381 52.381 0.00 0.00 38.74 3.41
1176 3058 1.676916 CCATGCTCGATGTCAACTGGT 60.677 52.381 0.00 0.00 0.00 4.00
1218 3100 0.824595 TTTCCTCGTCGGTGTCCTCA 60.825 55.000 0.00 0.00 0.00 3.86
1295 3177 2.244510 TGTGGTATACCTACCCGAAGGA 59.755 50.000 22.41 0.00 46.01 3.36
1311 3193 2.949177 TGTGCAGAGGTTTATGTGGT 57.051 45.000 0.00 0.00 0.00 4.16
1318 3200 2.552315 CACGGTTTATGTGCAGAGGTTT 59.448 45.455 0.00 0.00 0.00 3.27
1319 3201 2.151202 CACGGTTTATGTGCAGAGGTT 58.849 47.619 0.00 0.00 0.00 3.50
1320 3202 1.808411 CACGGTTTATGTGCAGAGGT 58.192 50.000 0.00 0.00 0.00 3.85
1339 3221 1.647084 GTGGAATGCGGAATACGGC 59.353 57.895 0.00 0.00 44.51 5.68
1340 3222 1.164041 GGGTGGAATGCGGAATACGG 61.164 60.000 0.00 0.00 44.51 4.02
1342 3224 1.757682 TTGGGTGGAATGCGGAATAC 58.242 50.000 0.00 0.00 0.00 1.89
1343 3225 2.516227 TTTGGGTGGAATGCGGAATA 57.484 45.000 0.00 0.00 0.00 1.75
1344 3226 1.864669 ATTTGGGTGGAATGCGGAAT 58.135 45.000 0.00 0.00 0.00 3.01
1345 3227 1.638529 AATTTGGGTGGAATGCGGAA 58.361 45.000 0.00 0.00 0.00 4.30
1346 3228 1.638529 AAATTTGGGTGGAATGCGGA 58.361 45.000 0.00 0.00 0.00 5.54
1347 3229 2.289320 TGAAAATTTGGGTGGAATGCGG 60.289 45.455 0.00 0.00 0.00 5.69
1348 3230 2.736192 GTGAAAATTTGGGTGGAATGCG 59.264 45.455 0.00 0.00 0.00 4.73
1349 3231 3.073678 GGTGAAAATTTGGGTGGAATGC 58.926 45.455 0.00 0.00 0.00 3.56
1350 3232 4.622260 AGGTGAAAATTTGGGTGGAATG 57.378 40.909 0.00 0.00 0.00 2.67
1351 3233 6.950860 ATAAGGTGAAAATTTGGGTGGAAT 57.049 33.333 0.00 0.00 0.00 3.01
1352 3234 6.755542 AATAAGGTGAAAATTTGGGTGGAA 57.244 33.333 0.00 0.00 0.00 3.53
1353 3235 9.548631 TTATAATAAGGTGAAAATTTGGGTGGA 57.451 29.630 0.00 0.00 0.00 4.02
1354 3236 9.594478 GTTATAATAAGGTGAAAATTTGGGTGG 57.406 33.333 0.00 0.00 0.00 4.61
1383 3265 5.121811 AGACTGGCTATGATGCTTGTTAAG 58.878 41.667 0.00 0.00 0.00 1.85
1384 3266 5.102953 AGACTGGCTATGATGCTTGTTAA 57.897 39.130 0.00 0.00 0.00 2.01
1385 3267 4.406972 AGAGACTGGCTATGATGCTTGTTA 59.593 41.667 0.00 0.00 0.00 2.41
1386 3268 3.199508 AGAGACTGGCTATGATGCTTGTT 59.800 43.478 0.00 0.00 0.00 2.83
1387 3269 2.770802 AGAGACTGGCTATGATGCTTGT 59.229 45.455 0.00 0.00 0.00 3.16
1388 3270 3.132160 CAGAGACTGGCTATGATGCTTG 58.868 50.000 0.00 0.00 38.08 4.01
1398 3280 2.171448 ACACTTTTGTCAGAGACTGGCT 59.829 45.455 5.04 0.00 36.97 4.75
1409 3294 0.388659 TGCATGCCCACACTTTTGTC 59.611 50.000 16.68 0.00 31.66 3.18
1414 3299 0.467844 TTGACTGCATGCCCACACTT 60.468 50.000 16.68 0.00 0.00 3.16
1422 3307 1.672356 ACCTCCGTTGACTGCATGC 60.672 57.895 11.82 11.82 0.00 4.06
1546 3431 0.889638 TTGAGTGCTCCGACTCGAGT 60.890 55.000 20.18 20.18 44.68 4.18
1993 3878 3.066900 AGAGTACAACATAGTGCGCTAGG 59.933 47.826 16.88 16.88 33.11 3.02
2020 3905 0.992695 GGAGCCTTTGGTAGAGGGTT 59.007 55.000 0.00 0.00 44.58 4.11
2044 3929 2.616842 CTCTTTGGGTAGTTGCACGTTT 59.383 45.455 0.00 0.00 0.00 3.60
2152 4037 4.864726 AGATGAAATAAAGGAGCTTGGCT 58.135 39.130 0.00 0.00 43.88 4.75
2328 4213 0.608856 TGACAACCCGACCGCTAGTA 60.609 55.000 0.00 0.00 0.00 1.82
2477 4362 3.356639 AAGAGCGGAGATGCGCGAA 62.357 57.895 12.10 0.00 39.83 4.70
2513 4398 0.915364 GGGATGGAGAGGTTGAGCTT 59.085 55.000 0.00 0.00 0.00 3.74
2601 4486 1.286260 GGAGACTCGTCGCTGTTGT 59.714 57.895 0.00 0.00 34.09 3.32
2677 4563 5.089970 TCTATGTGGTAGATATGCATGCC 57.910 43.478 16.68 0.00 34.50 4.40
2733 4628 7.337689 CCACCACTATGTGCAGCAAATATATAT 59.662 37.037 5.69 0.00 34.85 0.86
2915 4810 4.269603 GCTAGGCATATATCGTGCATCTTG 59.730 45.833 13.20 6.10 44.25 3.02
2924 4819 3.784701 AAGACCGCTAGGCATATATCG 57.215 47.619 0.00 0.00 42.76 2.92
2929 4824 4.948341 TGAAATAAGACCGCTAGGCATA 57.052 40.909 0.00 0.00 42.76 3.14
2939 4834 9.674824 CTCTGCAATGAAATATGAAATAAGACC 57.325 33.333 0.00 0.00 29.06 3.85
2956 4851 6.479990 TGGACGTATTAATTCTCTCTGCAATG 59.520 38.462 0.00 0.00 0.00 2.82
3059 4976 9.965824 ATGGAACTTAGTGTATTGAAACTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
3095 5012 7.681939 AATATTTCGAGTCTTAAGTTGCCAA 57.318 32.000 1.63 0.00 0.00 4.52
3178 5106 5.105106 TGAATCTTACAGCGGGAATAGAACA 60.105 40.000 0.00 0.00 0.00 3.18
3329 5257 7.764443 GTCCATAGCTGTTTGTTCTTGTATCTA 59.236 37.037 0.00 0.00 0.00 1.98
3368 5309 9.589111 GATTCTGGTAAAAAGGTTTGTTGTTAA 57.411 29.630 0.00 0.00 0.00 2.01
3369 5310 7.916450 CGATTCTGGTAAAAAGGTTTGTTGTTA 59.084 33.333 0.00 0.00 0.00 2.41
3414 6585 5.229469 GGAAGTACGTCAACGATATCAACAG 59.771 44.000 9.88 0.00 43.02 3.16
3434 6605 1.798223 TGTTCTTCGCATCAACGGAAG 59.202 47.619 0.00 0.00 0.00 3.46
3435 6606 1.872388 TGTTCTTCGCATCAACGGAA 58.128 45.000 0.00 0.00 0.00 4.30
3436 6607 1.529438 GTTGTTCTTCGCATCAACGGA 59.471 47.619 0.00 0.00 32.56 4.69
3437 6608 1.262950 TGTTGTTCTTCGCATCAACGG 59.737 47.619 0.00 0.00 41.74 4.44
3438 6609 2.661504 TGTTGTTCTTCGCATCAACG 57.338 45.000 0.00 0.00 41.74 4.10
3439 6610 5.687285 AGATTTTGTTGTTCTTCGCATCAAC 59.313 36.000 0.00 0.00 40.03 3.18
3440 6611 5.830912 AGATTTTGTTGTTCTTCGCATCAA 58.169 33.333 0.00 0.00 0.00 2.57
3441 6612 5.437289 AGATTTTGTTGTTCTTCGCATCA 57.563 34.783 0.00 0.00 0.00 3.07
3442 6613 5.387752 GCAAGATTTTGTTGTTCTTCGCATC 60.388 40.000 0.00 0.00 36.65 3.91
3443 6614 4.445385 GCAAGATTTTGTTGTTCTTCGCAT 59.555 37.500 0.00 0.00 36.65 4.73
3444 6615 3.796178 GCAAGATTTTGTTGTTCTTCGCA 59.204 39.130 0.00 0.00 36.65 5.10
3471 6642 4.780815 TCATCCTACATGAACAACCATCC 58.219 43.478 0.00 0.00 0.00 3.51
3476 6647 4.872691 CCACTCTCATCCTACATGAACAAC 59.127 45.833 0.00 0.00 0.00 3.32
3483 6654 5.654901 TCTAGTCCACTCTCATCCTACAT 57.345 43.478 0.00 0.00 0.00 2.29
3588 6763 3.646637 ACTATTCATGTGGGGTAGCCTAC 59.353 47.826 19.67 19.67 0.00 3.18
3611 6786 2.253610 CTGTCCTTGTGGGGTAGTGTA 58.746 52.381 0.00 0.00 35.33 2.90
3619 6794 2.420129 GCACTATACCTGTCCTTGTGGG 60.420 54.545 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.