Multiple sequence alignment - TraesCS1A01G423700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G423700 chr1A 100.000 2756 0 0 1 2756 578913158 578910403 0.000000e+00 5090.0
1 TraesCS1A01G423700 chr1A 94.074 135 7 1 15 149 486045903 486045770 1.290000e-48 204.0
2 TraesCS1A01G423700 chr1A 87.755 49 5 1 2111 2158 21410088 21410040 3.830000e-04 56.5
3 TraesCS1A01G423700 chr1D 90.290 1205 97 14 732 1930 482209834 482208644 0.000000e+00 1559.0
4 TraesCS1A01G423700 chr1D 82.342 538 81 9 1371 1907 482205139 482204615 3.240000e-124 455.0
5 TraesCS1A01G423700 chr1D 84.404 109 10 6 2003 2107 461266083 461265978 1.750000e-17 100.0
6 TraesCS1A01G423700 chr1D 96.970 33 1 0 2111 2143 19554405 19554437 3.830000e-04 56.5
7 TraesCS1A01G423700 chr1B 90.304 1052 66 13 731 1756 670715598 670714557 0.000000e+00 1345.0
8 TraesCS1A01G423700 chr1B 87.211 563 64 5 2196 2756 670686266 670685710 3.870000e-178 634.0
9 TraesCS1A01G423700 chr1B 93.478 138 9 0 19 156 626227006 626226869 3.600000e-49 206.0
10 TraesCS1A01G423700 chr1B 86.772 189 5 7 756 924 683738537 683738349 2.800000e-45 193.0
11 TraesCS1A01G423700 chr7A 95.714 140 4 2 19 158 348209733 348209596 9.930000e-55 224.0
12 TraesCS1A01G423700 chr7D 96.324 136 4 1 13 148 21000741 21000875 3.570000e-54 222.0
13 TraesCS1A01G423700 chr7D 86.905 84 9 2 2391 2472 491259678 491259595 2.920000e-15 93.5
14 TraesCS1A01G423700 chr7D 79.845 129 21 2 2383 2506 265692984 265692856 3.780000e-14 89.8
15 TraesCS1A01G423700 chr7D 81.522 92 17 0 2415 2506 265693447 265693356 2.940000e-10 76.8
16 TraesCS1A01G423700 chr6D 95.652 138 5 1 19 156 420707825 420707689 1.280000e-53 220.0
17 TraesCS1A01G423700 chr6D 75.740 169 19 14 2005 2154 47184976 47185141 6.370000e-07 65.8
18 TraesCS1A01G423700 chr6B 93.571 140 7 2 10 148 495435563 495435701 1.000000e-49 207.0
19 TraesCS1A01G423700 chr2A 93.056 144 7 3 12 152 638330275 638330132 1.000000e-49 207.0
20 TraesCS1A01G423700 chr2A 80.132 151 22 6 2383 2532 452797757 452797900 3.750000e-19 106.0
21 TraesCS1A01G423700 chr3A 92.958 142 8 2 20 160 733500154 733500014 3.600000e-49 206.0
22 TraesCS1A01G423700 chr3A 78.571 168 15 13 2005 2153 393104223 393104388 1.050000e-14 91.6
23 TraesCS1A01G423700 chr4A 88.095 168 14 4 15 177 236198091 236198257 7.790000e-46 195.0
24 TraesCS1A01G423700 chr5B 78.750 160 17 12 2011 2154 194184989 194185147 1.050000e-14 91.6
25 TraesCS1A01G423700 chr2D 81.250 112 21 0 2421 2532 342571244 342571355 1.050000e-14 91.6
26 TraesCS1A01G423700 chr2D 87.838 74 8 1 2400 2472 196438782 196438709 4.890000e-13 86.1
27 TraesCS1A01G423700 chr2D 95.000 40 2 0 2114 2153 423558748 423558709 2.290000e-06 63.9
28 TraesCS1A01G423700 chr5A 87.654 81 3 5 2429 2507 644927082 644927157 1.360000e-13 87.9
29 TraesCS1A01G423700 chr4B 79.464 112 20 2 2398 2506 634333507 634333396 2.940000e-10 76.8
30 TraesCS1A01G423700 chr2B 92.500 40 3 0 2114 2153 142931594 142931555 1.070000e-04 58.4
31 TraesCS1A01G423700 chrUn 96.970 33 1 0 2114 2146 10337113 10337081 3.830000e-04 56.5
32 TraesCS1A01G423700 chrUn 96.970 33 1 0 2111 2143 425258408 425258440 3.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G423700 chr1A 578910403 578913158 2755 True 5090 5090 100.000 1 2756 1 chr1A.!!$R3 2755
1 TraesCS1A01G423700 chr1D 482204615 482209834 5219 True 1007 1559 86.316 732 1930 2 chr1D.!!$R2 1198
2 TraesCS1A01G423700 chr1B 670714557 670715598 1041 True 1345 1345 90.304 731 1756 1 chr1B.!!$R3 1025
3 TraesCS1A01G423700 chr1B 670685710 670686266 556 True 634 634 87.211 2196 2756 1 chr1B.!!$R2 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 602 0.104671 GCAAAGCAGCTTGGTCCAAA 59.895 50.0 8.88 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 6037 0.033781 TTGCTGCAGGAATTGGTTGC 59.966 50.0 17.55 0.0 38.3 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.734984 ATATTTTTAATAATGGTACTCCCTCCG 57.265 33.333 1.82 0.00 0.00 4.63
30 31 6.564557 TTTTAATAATGGTACTCCCTCCGT 57.435 37.500 0.00 0.00 0.00 4.69
31 32 5.796424 TTAATAATGGTACTCCCTCCGTC 57.204 43.478 0.00 0.00 0.00 4.79
32 33 2.077687 TAATGGTACTCCCTCCGTCC 57.922 55.000 0.00 0.00 0.00 4.79
33 34 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
34 35 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
35 36 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
36 37 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
37 38 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
38 39 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
39 40 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
40 41 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
41 42 1.838077 CTCCCTCCGTCCCAAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
42 43 2.238898 CTCCCTCCGTCCCAAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
43 44 2.026636 TCCCTCCGTCCCAAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
44 45 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
45 46 3.418047 CCTCCGTCCCAAAATACTTGTT 58.582 45.455 0.00 0.00 0.00 2.83
46 47 4.566070 CCCTCCGTCCCAAAATACTTGTTA 60.566 45.833 0.00 0.00 0.00 2.41
47 48 5.190677 CCTCCGTCCCAAAATACTTGTTAT 58.809 41.667 0.00 0.00 0.00 1.89
48 49 5.296035 CCTCCGTCCCAAAATACTTGTTATC 59.704 44.000 0.00 0.00 0.00 1.75
49 50 5.806818 TCCGTCCCAAAATACTTGTTATCA 58.193 37.500 0.00 0.00 0.00 2.15
50 51 6.239396 TCCGTCCCAAAATACTTGTTATCAA 58.761 36.000 0.00 0.00 0.00 2.57
51 52 6.715718 TCCGTCCCAAAATACTTGTTATCAAA 59.284 34.615 0.00 0.00 32.87 2.69
52 53 7.230913 TCCGTCCCAAAATACTTGTTATCAAAA 59.769 33.333 0.00 0.00 32.87 2.44
53 54 8.032451 CCGTCCCAAAATACTTGTTATCAAAAT 58.968 33.333 0.00 0.00 32.87 1.82
54 55 8.859156 CGTCCCAAAATACTTGTTATCAAAATG 58.141 33.333 0.00 0.00 32.87 2.32
55 56 9.150348 GTCCCAAAATACTTGTTATCAAAATGG 57.850 33.333 0.00 0.00 32.87 3.16
56 57 9.094578 TCCCAAAATACTTGTTATCAAAATGGA 57.905 29.630 0.00 0.00 32.87 3.41
57 58 9.889128 CCCAAAATACTTGTTATCAAAATGGAT 57.111 29.630 0.00 0.00 32.87 3.41
78 79 9.995003 ATGGATAAAGAGAGATGTATCTTGAAC 57.005 33.333 0.00 0.00 34.38 3.18
79 80 9.206690 TGGATAAAGAGAGATGTATCTTGAACT 57.793 33.333 0.00 0.00 34.38 3.01
103 104 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
110 111 8.113173 ACGTCTAGATACATCTCCTTTTATCC 57.887 38.462 0.00 0.00 38.32 2.59
111 112 7.724506 ACGTCTAGATACATCTCCTTTTATCCA 59.275 37.037 0.00 0.00 38.32 3.41
112 113 8.744652 CGTCTAGATACATCTCCTTTTATCCAT 58.255 37.037 0.00 0.00 38.32 3.41
120 121 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
121 122 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
122 123 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
123 124 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
124 125 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
125 126 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
126 127 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
132 133 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
133 134 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
134 135 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
135 136 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
136 137 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
137 138 3.056393 TGATGACAAGTATTTCCGGACGT 60.056 43.478 1.83 0.00 0.00 4.34
138 139 4.158209 TGATGACAAGTATTTCCGGACGTA 59.842 41.667 1.83 0.00 0.00 3.57
139 140 4.100707 TGACAAGTATTTCCGGACGTAG 57.899 45.455 1.83 0.00 0.00 3.51
140 141 3.119388 TGACAAGTATTTCCGGACGTAGG 60.119 47.826 1.83 3.31 0.00 3.18
141 142 2.167075 ACAAGTATTTCCGGACGTAGGG 59.833 50.000 1.83 4.00 0.00 3.53
142 143 2.428171 CAAGTATTTCCGGACGTAGGGA 59.572 50.000 1.83 6.35 0.00 4.20
143 144 2.305009 AGTATTTCCGGACGTAGGGAG 58.695 52.381 1.83 0.00 33.01 4.30
144 145 2.027385 GTATTTCCGGACGTAGGGAGT 58.973 52.381 1.83 0.97 33.01 3.85
145 146 2.442236 ATTTCCGGACGTAGGGAGTA 57.558 50.000 1.83 2.63 33.01 2.59
146 147 2.442236 TTTCCGGACGTAGGGAGTAT 57.558 50.000 1.83 0.00 33.01 2.12
147 148 2.442236 TTCCGGACGTAGGGAGTATT 57.558 50.000 1.83 0.00 33.01 1.89
148 149 3.576078 TTCCGGACGTAGGGAGTATTA 57.424 47.619 1.83 0.00 33.01 0.98
149 150 3.576078 TCCGGACGTAGGGAGTATTAA 57.424 47.619 0.00 0.00 0.00 1.40
150 151 3.214328 TCCGGACGTAGGGAGTATTAAC 58.786 50.000 0.00 0.00 0.00 2.01
151 152 2.951642 CCGGACGTAGGGAGTATTAACA 59.048 50.000 0.00 0.00 0.00 2.41
152 153 3.571401 CCGGACGTAGGGAGTATTAACAT 59.429 47.826 0.00 0.00 0.00 2.71
153 154 4.761739 CCGGACGTAGGGAGTATTAACATA 59.238 45.833 0.00 0.00 0.00 2.29
154 155 5.416952 CCGGACGTAGGGAGTATTAACATAT 59.583 44.000 0.00 0.00 0.00 1.78
155 156 6.599244 CCGGACGTAGGGAGTATTAACATATA 59.401 42.308 0.00 0.00 0.00 0.86
156 157 7.284034 CCGGACGTAGGGAGTATTAACATATAT 59.716 40.741 0.00 0.00 0.00 0.86
157 158 8.680903 CGGACGTAGGGAGTATTAACATATATT 58.319 37.037 0.00 0.00 0.00 1.28
184 185 9.654663 TGAAATGCATGAATATTTTGAATGTGA 57.345 25.926 0.00 0.00 0.00 3.58
187 188 9.825109 AATGCATGAATATTTTGAATGTGATGA 57.175 25.926 0.00 0.00 0.00 2.92
188 189 9.825109 ATGCATGAATATTTTGAATGTGATGAA 57.175 25.926 0.00 0.00 0.00 2.57
189 190 9.825109 TGCATGAATATTTTGAATGTGATGAAT 57.175 25.926 0.00 0.00 0.00 2.57
206 207 9.978044 TGTGATGAATAATGTTTTTGAATGACA 57.022 25.926 0.00 0.00 0.00 3.58
276 277 9.603921 AATTGTTTGAAATGTCATGAAGAAACT 57.396 25.926 0.00 0.00 32.48 2.66
277 278 9.603921 ATTGTTTGAAATGTCATGAAGAAACTT 57.396 25.926 0.00 0.00 32.48 2.66
278 279 9.434420 TTGTTTGAAATGTCATGAAGAAACTTT 57.566 25.926 0.00 0.00 32.48 2.66
279 280 9.086336 TGTTTGAAATGTCATGAAGAAACTTTC 57.914 29.630 0.00 2.05 32.48 2.62
280 281 9.305925 GTTTGAAATGTCATGAAGAAACTTTCT 57.694 29.630 0.00 0.00 35.99 2.52
384 385 7.954788 TTTTTACACTGCTTGAACTTTTTGT 57.045 28.000 0.00 0.00 0.00 2.83
386 387 9.477484 TTTTTACACTGCTTGAACTTTTTGTAA 57.523 25.926 0.00 0.00 0.00 2.41
387 388 9.477484 TTTTACACTGCTTGAACTTTTTGTAAA 57.523 25.926 0.00 0.00 36.75 2.01
388 389 9.646427 TTTACACTGCTTGAACTTTTTGTAAAT 57.354 25.926 0.00 0.00 34.74 1.40
389 390 7.524294 ACACTGCTTGAACTTTTTGTAAATG 57.476 32.000 0.00 0.00 0.00 2.32
390 391 6.035975 ACACTGCTTGAACTTTTTGTAAATGC 59.964 34.615 0.00 0.00 0.00 3.56
391 392 5.231991 ACTGCTTGAACTTTTTGTAAATGCG 59.768 36.000 0.00 0.00 0.00 4.73
392 393 5.105752 TGCTTGAACTTTTTGTAAATGCGT 58.894 33.333 0.00 0.00 0.00 5.24
393 394 6.266323 TGCTTGAACTTTTTGTAAATGCGTA 58.734 32.000 0.00 0.00 0.00 4.42
394 395 6.752351 TGCTTGAACTTTTTGTAAATGCGTAA 59.248 30.769 0.00 0.00 0.00 3.18
395 396 7.054998 GCTTGAACTTTTTGTAAATGCGTAAC 58.945 34.615 0.00 0.00 0.00 2.50
396 397 6.719915 TGAACTTTTTGTAAATGCGTAACG 57.280 33.333 0.00 0.00 0.00 3.18
397 398 6.484540 TGAACTTTTTGTAAATGCGTAACGA 58.515 32.000 0.00 0.00 0.00 3.85
398 399 6.629649 TGAACTTTTTGTAAATGCGTAACGAG 59.370 34.615 0.00 0.00 0.00 4.18
399 400 4.907582 ACTTTTTGTAAATGCGTAACGAGC 59.092 37.500 0.00 0.00 0.00 5.03
400 401 2.773036 TTGTAAATGCGTAACGAGCG 57.227 45.000 0.00 0.00 37.44 5.03
412 413 5.718577 CGTAACGAGCGCTTTTAAAATTT 57.281 34.783 13.26 0.00 0.00 1.82
413 414 5.517008 CGTAACGAGCGCTTTTAAAATTTG 58.483 37.500 13.26 0.00 0.00 2.32
414 415 5.337512 CGTAACGAGCGCTTTTAAAATTTGA 59.662 36.000 13.26 0.00 0.00 2.69
415 416 6.129665 CGTAACGAGCGCTTTTAAAATTTGAA 60.130 34.615 13.26 0.00 0.00 2.69
416 417 5.806089 ACGAGCGCTTTTAAAATTTGAAG 57.194 34.783 13.26 0.00 0.00 3.02
417 418 5.278604 ACGAGCGCTTTTAAAATTTGAAGT 58.721 33.333 13.26 0.00 0.00 3.01
418 419 6.432107 ACGAGCGCTTTTAAAATTTGAAGTA 58.568 32.000 13.26 0.00 0.00 2.24
419 420 6.913673 ACGAGCGCTTTTAAAATTTGAAGTAA 59.086 30.769 13.26 0.00 0.00 2.24
420 421 7.432838 ACGAGCGCTTTTAAAATTTGAAGTAAA 59.567 29.630 13.26 0.00 0.00 2.01
421 422 8.424731 CGAGCGCTTTTAAAATTTGAAGTAAAT 58.575 29.630 13.26 0.00 40.67 1.40
547 548 8.930846 AATCTAATGGAAAGATCAGTTATGGG 57.069 34.615 0.00 0.00 32.48 4.00
548 549 6.299141 TCTAATGGAAAGATCAGTTATGGGC 58.701 40.000 0.00 0.00 0.00 5.36
549 550 3.297134 TGGAAAGATCAGTTATGGGCC 57.703 47.619 0.00 0.00 0.00 5.80
550 551 2.222027 GGAAAGATCAGTTATGGGCCG 58.778 52.381 0.00 0.00 0.00 6.13
551 552 1.604278 GAAAGATCAGTTATGGGCCGC 59.396 52.381 0.00 0.00 0.00 6.53
552 553 0.532862 AAGATCAGTTATGGGCCGCG 60.533 55.000 0.00 0.00 0.00 6.46
553 554 1.227556 GATCAGTTATGGGCCGCGT 60.228 57.895 4.92 0.00 0.00 6.01
554 555 1.222115 GATCAGTTATGGGCCGCGTC 61.222 60.000 4.92 0.00 0.00 5.19
555 556 2.660258 ATCAGTTATGGGCCGCGTCC 62.660 60.000 4.92 0.00 0.00 4.79
556 557 4.524318 AGTTATGGGCCGCGTCCG 62.524 66.667 4.92 0.00 0.00 4.79
557 558 4.825252 GTTATGGGCCGCGTCCGT 62.825 66.667 4.92 10.49 0.00 4.69
558 559 4.517815 TTATGGGCCGCGTCCGTC 62.518 66.667 12.77 0.00 0.00 4.79
573 574 4.664677 GTCTGGGCGCGTCAGTGT 62.665 66.667 23.46 0.00 34.15 3.55
574 575 2.986979 TCTGGGCGCGTCAGTGTA 60.987 61.111 23.46 8.69 34.15 2.90
575 576 2.048597 CTGGGCGCGTCAGTGTAA 60.049 61.111 14.93 0.00 0.00 2.41
576 577 2.048597 TGGGCGCGTCAGTGTAAG 60.049 61.111 14.93 0.00 0.00 2.34
577 578 2.813908 GGGCGCGTCAGTGTAAGG 60.814 66.667 14.93 0.00 0.00 2.69
578 579 2.813908 GGCGCGTCAGTGTAAGGG 60.814 66.667 5.47 0.00 0.00 3.95
579 580 2.260434 GCGCGTCAGTGTAAGGGA 59.740 61.111 8.43 0.00 0.00 4.20
580 581 1.805945 GCGCGTCAGTGTAAGGGAG 60.806 63.158 8.43 0.00 0.00 4.30
581 582 1.805945 CGCGTCAGTGTAAGGGAGC 60.806 63.158 0.00 0.00 0.00 4.70
582 583 1.805945 GCGTCAGTGTAAGGGAGCG 60.806 63.158 0.00 0.00 0.00 5.03
583 584 1.805945 CGTCAGTGTAAGGGAGCGC 60.806 63.158 0.00 0.00 0.00 5.92
584 585 1.292223 GTCAGTGTAAGGGAGCGCA 59.708 57.895 11.47 0.00 0.00 6.09
585 586 0.320421 GTCAGTGTAAGGGAGCGCAA 60.320 55.000 11.47 0.00 0.00 4.85
586 587 0.394938 TCAGTGTAAGGGAGCGCAAA 59.605 50.000 11.47 0.00 0.00 3.68
587 588 0.798776 CAGTGTAAGGGAGCGCAAAG 59.201 55.000 11.47 0.00 0.00 2.77
598 599 2.256461 CGCAAAGCAGCTTGGTCC 59.744 61.111 8.88 0.00 0.00 4.46
599 600 2.554636 CGCAAAGCAGCTTGGTCCA 61.555 57.895 8.88 0.00 0.00 4.02
600 601 1.741525 GCAAAGCAGCTTGGTCCAA 59.258 52.632 8.88 3.76 0.00 3.53
601 602 0.104671 GCAAAGCAGCTTGGTCCAAA 59.895 50.000 8.88 0.00 0.00 3.28
602 603 1.473080 GCAAAGCAGCTTGGTCCAAAA 60.473 47.619 8.88 0.00 0.00 2.44
603 604 2.807837 GCAAAGCAGCTTGGTCCAAAAT 60.808 45.455 8.88 0.00 0.00 1.82
604 605 3.469739 CAAAGCAGCTTGGTCCAAAATT 58.530 40.909 8.88 0.00 0.00 1.82
605 606 3.843893 AAGCAGCTTGGTCCAAAATTT 57.156 38.095 6.93 0.00 0.00 1.82
606 607 3.116079 AGCAGCTTGGTCCAAAATTTG 57.884 42.857 5.64 0.00 0.00 2.32
607 608 2.699846 AGCAGCTTGGTCCAAAATTTGA 59.300 40.909 7.37 0.00 0.00 2.69
608 609 3.134442 AGCAGCTTGGTCCAAAATTTGAA 59.866 39.130 7.37 0.00 0.00 2.69
609 610 3.495753 GCAGCTTGGTCCAAAATTTGAAG 59.504 43.478 7.37 4.12 0.00 3.02
610 611 4.696455 CAGCTTGGTCCAAAATTTGAAGT 58.304 39.130 7.37 0.00 0.00 3.01
611 612 5.118286 CAGCTTGGTCCAAAATTTGAAGTT 58.882 37.500 7.37 0.00 0.00 2.66
612 613 5.585844 CAGCTTGGTCCAAAATTTGAAGTTT 59.414 36.000 7.37 0.00 0.00 2.66
613 614 6.093909 CAGCTTGGTCCAAAATTTGAAGTTTT 59.906 34.615 7.37 0.00 0.00 2.43
614 615 6.093909 AGCTTGGTCCAAAATTTGAAGTTTTG 59.906 34.615 16.09 16.09 43.00 2.44
615 616 6.128035 GCTTGGTCCAAAATTTGAAGTTTTGT 60.128 34.615 19.77 0.00 42.25 2.83
616 617 7.574779 GCTTGGTCCAAAATTTGAAGTTTTGTT 60.575 33.333 19.77 0.00 42.25 2.83
617 618 7.751768 TGGTCCAAAATTTGAAGTTTTGTTT 57.248 28.000 19.77 0.00 42.25 2.83
618 619 8.171164 TGGTCCAAAATTTGAAGTTTTGTTTT 57.829 26.923 19.77 0.00 42.25 2.43
619 620 8.633561 TGGTCCAAAATTTGAAGTTTTGTTTTT 58.366 25.926 19.77 0.00 42.25 1.94
620 621 8.910666 GGTCCAAAATTTGAAGTTTTGTTTTTG 58.089 29.630 19.77 8.29 42.25 2.44
621 622 9.670719 GTCCAAAATTTGAAGTTTTGTTTTTGA 57.329 25.926 19.77 10.01 42.25 2.69
622 623 9.890352 TCCAAAATTTGAAGTTTTGTTTTTGAG 57.110 25.926 19.77 7.20 42.25 3.02
623 624 9.127006 CCAAAATTTGAAGTTTTGTTTTTGAGG 57.873 29.630 19.77 3.63 42.25 3.86
624 625 9.127006 CAAAATTTGAAGTTTTGTTTTTGAGGG 57.873 29.630 15.15 0.00 40.12 4.30
625 626 7.389803 AATTTGAAGTTTTGTTTTTGAGGGG 57.610 32.000 0.00 0.00 0.00 4.79
626 627 5.491323 TTGAAGTTTTGTTTTTGAGGGGT 57.509 34.783 0.00 0.00 0.00 4.95
627 628 4.826556 TGAAGTTTTGTTTTTGAGGGGTG 58.173 39.130 0.00 0.00 0.00 4.61
628 629 4.284746 TGAAGTTTTGTTTTTGAGGGGTGT 59.715 37.500 0.00 0.00 0.00 4.16
629 630 4.465632 AGTTTTGTTTTTGAGGGGTGTC 57.534 40.909 0.00 0.00 0.00 3.67
630 631 3.196901 AGTTTTGTTTTTGAGGGGTGTCC 59.803 43.478 0.00 0.00 0.00 4.02
631 632 2.534042 TTGTTTTTGAGGGGTGTCCA 57.466 45.000 0.00 0.00 38.24 4.02
632 633 2.534042 TGTTTTTGAGGGGTGTCCAA 57.466 45.000 0.00 0.00 38.24 3.53
633 634 2.821437 TGTTTTTGAGGGGTGTCCAAA 58.179 42.857 0.00 0.00 38.24 3.28
634 635 3.173965 TGTTTTTGAGGGGTGTCCAAAA 58.826 40.909 0.00 0.00 37.81 2.44
635 636 3.777522 TGTTTTTGAGGGGTGTCCAAAAT 59.222 39.130 0.00 0.00 38.87 1.82
636 637 4.226168 TGTTTTTGAGGGGTGTCCAAAATT 59.774 37.500 0.00 0.00 38.87 1.82
637 638 5.189928 GTTTTTGAGGGGTGTCCAAAATTT 58.810 37.500 0.00 0.00 38.87 1.82
638 639 4.414337 TTTGAGGGGTGTCCAAAATTTG 57.586 40.909 0.00 0.00 38.24 2.32
639 640 3.320610 TGAGGGGTGTCCAAAATTTGA 57.679 42.857 7.37 0.00 38.24 2.69
640 641 3.647636 TGAGGGGTGTCCAAAATTTGAA 58.352 40.909 7.37 0.00 38.24 2.69
641 642 3.640967 TGAGGGGTGTCCAAAATTTGAAG 59.359 43.478 7.37 0.00 38.24 3.02
642 643 3.641436 GAGGGGTGTCCAAAATTTGAAGT 59.359 43.478 7.37 0.00 38.24 3.01
643 644 4.810345 AGGGGTGTCCAAAATTTGAAGTA 58.190 39.130 7.37 0.00 38.24 2.24
644 645 5.212745 AGGGGTGTCCAAAATTTGAAGTAA 58.787 37.500 7.37 0.00 38.24 2.24
645 646 5.663556 AGGGGTGTCCAAAATTTGAAGTAAA 59.336 36.000 7.37 0.00 38.24 2.01
646 647 6.328934 AGGGGTGTCCAAAATTTGAAGTAAAT 59.671 34.615 7.37 0.00 38.11 1.40
647 648 6.426633 GGGGTGTCCAAAATTTGAAGTAAATG 59.573 38.462 7.37 0.00 35.90 2.32
648 649 6.073276 GGGTGTCCAAAATTTGAAGTAAATGC 60.073 38.462 7.37 0.00 38.93 3.56
649 650 6.346518 GGTGTCCAAAATTTGAAGTAAATGCG 60.347 38.462 7.37 0.00 38.93 4.73
650 651 6.419413 GTGTCCAAAATTTGAAGTAAATGCGA 59.581 34.615 7.37 0.00 38.93 5.10
651 652 6.640499 TGTCCAAAATTTGAAGTAAATGCGAG 59.360 34.615 7.37 0.00 38.93 5.03
652 653 6.861055 GTCCAAAATTTGAAGTAAATGCGAGA 59.139 34.615 7.37 0.00 38.93 4.04
653 654 7.381139 GTCCAAAATTTGAAGTAAATGCGAGAA 59.619 33.333 7.37 0.00 38.93 2.87
654 655 7.594758 TCCAAAATTTGAAGTAAATGCGAGAAG 59.405 33.333 7.37 0.00 38.93 2.85
665 666 2.510238 CGAGAAGCAAGGCCGAGG 60.510 66.667 0.00 0.00 0.00 4.63
666 667 2.982130 GAGAAGCAAGGCCGAGGA 59.018 61.111 0.00 0.00 0.00 3.71
667 668 1.524482 GAGAAGCAAGGCCGAGGAT 59.476 57.895 0.00 0.00 0.00 3.24
668 669 0.813210 GAGAAGCAAGGCCGAGGATG 60.813 60.000 0.00 0.00 0.00 3.51
669 670 1.221840 GAAGCAAGGCCGAGGATGA 59.778 57.895 0.00 0.00 0.00 2.92
670 671 0.392998 GAAGCAAGGCCGAGGATGAA 60.393 55.000 0.00 0.00 0.00 2.57
671 672 0.257039 AAGCAAGGCCGAGGATGAAT 59.743 50.000 0.00 0.00 0.00 2.57
672 673 0.257039 AGCAAGGCCGAGGATGAATT 59.743 50.000 0.00 0.00 0.00 2.17
673 674 1.106285 GCAAGGCCGAGGATGAATTT 58.894 50.000 0.00 0.00 0.00 1.82
674 675 1.478105 GCAAGGCCGAGGATGAATTTT 59.522 47.619 0.00 0.00 0.00 1.82
675 676 2.736400 GCAAGGCCGAGGATGAATTTTG 60.736 50.000 0.00 0.00 0.00 2.44
676 677 2.493278 CAAGGCCGAGGATGAATTTTGT 59.507 45.455 0.00 0.00 0.00 2.83
677 678 2.094675 AGGCCGAGGATGAATTTTGTG 58.905 47.619 0.00 0.00 0.00 3.33
678 679 1.469767 GGCCGAGGATGAATTTTGTGC 60.470 52.381 0.00 0.00 0.00 4.57
679 680 1.474077 GCCGAGGATGAATTTTGTGCT 59.526 47.619 0.00 0.00 0.00 4.40
680 681 2.478539 GCCGAGGATGAATTTTGTGCTC 60.479 50.000 0.00 0.00 0.00 4.26
681 682 3.012518 CCGAGGATGAATTTTGTGCTCT 58.987 45.455 0.00 0.00 0.00 4.09
682 683 3.064545 CCGAGGATGAATTTTGTGCTCTC 59.935 47.826 0.00 0.00 0.00 3.20
683 684 3.686241 CGAGGATGAATTTTGTGCTCTCA 59.314 43.478 5.93 0.00 0.00 3.27
684 685 4.201792 CGAGGATGAATTTTGTGCTCTCAG 60.202 45.833 5.93 0.00 0.00 3.35
685 686 4.660168 AGGATGAATTTTGTGCTCTCAGT 58.340 39.130 0.00 0.00 0.00 3.41
686 687 5.075493 AGGATGAATTTTGTGCTCTCAGTT 58.925 37.500 0.00 0.00 0.00 3.16
687 688 5.048224 AGGATGAATTTTGTGCTCTCAGTTG 60.048 40.000 0.00 0.00 0.00 3.16
688 689 4.572985 TGAATTTTGTGCTCTCAGTTGG 57.427 40.909 0.00 0.00 0.00 3.77
689 690 3.318839 TGAATTTTGTGCTCTCAGTTGGG 59.681 43.478 0.00 0.00 0.00 4.12
690 691 1.032014 TTTTGTGCTCTCAGTTGGGC 58.968 50.000 0.00 0.00 0.00 5.36
691 692 0.183492 TTTGTGCTCTCAGTTGGGCT 59.817 50.000 0.00 0.00 0.00 5.19
692 693 0.535780 TTGTGCTCTCAGTTGGGCTG 60.536 55.000 0.00 0.00 46.34 4.85
693 694 2.033141 TGCTCTCAGTTGGGCTGC 59.967 61.111 0.00 0.00 44.66 5.25
694 695 2.749441 GCTCTCAGTTGGGCTGCC 60.749 66.667 11.05 11.05 44.66 4.85
695 696 2.045536 CTCTCAGTTGGGCTGCCC 60.046 66.667 30.97 30.97 44.66 5.36
712 713 2.665000 CCTCTCAGGGAGCGCAAA 59.335 61.111 11.47 0.00 40.57 3.68
713 714 1.449246 CCTCTCAGGGAGCGCAAAG 60.449 63.158 11.47 0.00 40.57 2.77
724 725 3.646554 CGCAAAGCAGCTCAGTCA 58.353 55.556 0.00 0.00 0.00 3.41
725 726 2.168947 CGCAAAGCAGCTCAGTCAT 58.831 52.632 0.00 0.00 0.00 3.06
726 727 0.179197 CGCAAAGCAGCTCAGTCATG 60.179 55.000 0.00 0.00 0.00 3.07
727 728 1.162698 GCAAAGCAGCTCAGTCATGA 58.837 50.000 0.00 0.00 0.00 3.07
728 729 1.538512 GCAAAGCAGCTCAGTCATGAA 59.461 47.619 0.00 0.00 34.23 2.57
729 730 2.414293 GCAAAGCAGCTCAGTCATGAAG 60.414 50.000 0.00 0.00 34.23 3.02
989 1010 4.617520 ATGCCACGCCACACACGA 62.618 61.111 0.00 0.00 0.00 4.35
993 1014 2.888051 CACGCCACACACGACACA 60.888 61.111 0.00 0.00 0.00 3.72
994 1015 2.888534 ACGCCACACACGACACAC 60.889 61.111 0.00 0.00 0.00 3.82
998 1019 1.366111 GCCACACACGACACACAACT 61.366 55.000 0.00 0.00 0.00 3.16
1405 1432 1.017177 TCCAAACTACGCGTCCATGC 61.017 55.000 18.63 0.00 0.00 4.06
1416 1443 3.774528 TCCATGCGCTTCGGAGCT 61.775 61.111 15.14 0.00 46.96 4.09
1431 1458 0.040781 GAGCTAGCACGACGGAGATC 60.041 60.000 18.83 0.00 0.00 2.75
1437 1464 0.526524 GCACGACGGAGATCTTCCTG 60.527 60.000 0.00 0.00 44.41 3.86
1734 1761 2.679716 GCTGGCTCCCCTTCATGT 59.320 61.111 0.00 0.00 0.00 3.21
1737 1764 0.679002 CTGGCTCCCCTTCATGTGTG 60.679 60.000 0.00 0.00 0.00 3.82
1797 5866 2.233654 CGAGCATGTGCCGCTACTC 61.234 63.158 0.57 0.00 40.63 2.59
1799 5868 1.150567 GAGCATGTGCCGCTACTCTG 61.151 60.000 0.57 0.00 40.63 3.35
1800 5869 1.448540 GCATGTGCCGCTACTCTGT 60.449 57.895 0.00 0.00 34.31 3.41
1816 5885 4.796369 ACTCTGTTCGTACTAGCAGTTTC 58.204 43.478 10.37 0.00 0.00 2.78
1817 5886 4.519730 ACTCTGTTCGTACTAGCAGTTTCT 59.480 41.667 10.37 0.00 0.00 2.52
1818 5887 5.044428 TCTGTTCGTACTAGCAGTTTCTC 57.956 43.478 10.37 0.00 0.00 2.87
1823 5892 6.420008 TGTTCGTACTAGCAGTTTCTCTTTTC 59.580 38.462 0.00 0.00 0.00 2.29
1824 5893 5.152097 TCGTACTAGCAGTTTCTCTTTTCG 58.848 41.667 0.00 0.00 0.00 3.46
1832 5901 4.065088 CAGTTTCTCTTTTCGGTCATCCA 58.935 43.478 0.00 0.00 0.00 3.41
1840 5909 0.326927 TTCGGTCATCCAAACCCTCC 59.673 55.000 0.00 0.00 32.89 4.30
1870 5939 3.092301 TGAGACGAATCTGACACCATCT 58.908 45.455 0.00 0.00 34.34 2.90
1879 5948 4.811555 TCTGACACCATCTTTGTTTTCG 57.188 40.909 0.00 0.00 0.00 3.46
1883 5952 5.812652 TGACACCATCTTTGTTTTCGTTAC 58.187 37.500 0.00 0.00 0.00 2.50
1887 5956 5.173131 CACCATCTTTGTTTTCGTTACTTGC 59.827 40.000 0.00 0.00 0.00 4.01
1920 5989 7.812648 TGTTGAACATTTATTCTAACTTCCGG 58.187 34.615 0.00 0.00 0.00 5.14
1921 5990 6.431198 TGAACATTTATTCTAACTTCCGGC 57.569 37.500 0.00 0.00 0.00 6.13
1922 5991 6.177610 TGAACATTTATTCTAACTTCCGGCT 58.822 36.000 0.00 0.00 0.00 5.52
1923 5992 6.093495 TGAACATTTATTCTAACTTCCGGCTG 59.907 38.462 0.00 0.00 0.00 4.85
1924 5993 5.741011 ACATTTATTCTAACTTCCGGCTGA 58.259 37.500 0.00 0.00 0.00 4.26
1925 5994 5.817816 ACATTTATTCTAACTTCCGGCTGAG 59.182 40.000 0.00 0.00 0.00 3.35
1926 5995 5.416271 TTTATTCTAACTTCCGGCTGAGT 57.584 39.130 0.00 0.00 0.00 3.41
1927 5996 6.534475 TTTATTCTAACTTCCGGCTGAGTA 57.466 37.500 0.00 0.00 0.00 2.59
1928 5997 6.534475 TTATTCTAACTTCCGGCTGAGTAA 57.466 37.500 0.00 0.00 0.00 2.24
1929 5998 5.615925 ATTCTAACTTCCGGCTGAGTAAT 57.384 39.130 0.00 0.00 0.00 1.89
1930 5999 4.650754 TCTAACTTCCGGCTGAGTAATC 57.349 45.455 0.00 0.00 0.00 1.75
1931 6000 2.693267 AACTTCCGGCTGAGTAATCC 57.307 50.000 0.00 0.00 0.00 3.01
1932 6001 0.831307 ACTTCCGGCTGAGTAATCCC 59.169 55.000 0.00 0.00 0.00 3.85
1933 6002 1.123928 CTTCCGGCTGAGTAATCCCT 58.876 55.000 0.00 0.00 0.00 4.20
1934 6003 0.830648 TTCCGGCTGAGTAATCCCTG 59.169 55.000 0.00 0.00 0.00 4.45
1935 6004 0.325296 TCCGGCTGAGTAATCCCTGT 60.325 55.000 0.00 0.00 0.00 4.00
1936 6005 1.063492 TCCGGCTGAGTAATCCCTGTA 60.063 52.381 0.00 0.00 0.00 2.74
1937 6006 1.971357 CCGGCTGAGTAATCCCTGTAT 59.029 52.381 0.00 0.00 0.00 2.29
1938 6007 2.289072 CCGGCTGAGTAATCCCTGTATG 60.289 54.545 0.00 0.00 0.00 2.39
1939 6008 2.628178 CGGCTGAGTAATCCCTGTATGA 59.372 50.000 0.00 0.00 0.00 2.15
1940 6009 3.259374 CGGCTGAGTAATCCCTGTATGAT 59.741 47.826 0.00 0.00 0.00 2.45
1941 6010 4.619394 CGGCTGAGTAATCCCTGTATGATC 60.619 50.000 0.00 0.00 0.00 2.92
1942 6011 4.284490 GGCTGAGTAATCCCTGTATGATCA 59.716 45.833 0.00 0.00 0.00 2.92
1943 6012 5.221722 GGCTGAGTAATCCCTGTATGATCAA 60.222 44.000 0.00 0.00 0.00 2.57
1944 6013 6.471146 GCTGAGTAATCCCTGTATGATCAAT 58.529 40.000 0.00 0.00 0.00 2.57
1945 6014 6.939163 GCTGAGTAATCCCTGTATGATCAATT 59.061 38.462 0.00 0.00 0.00 2.32
1946 6015 7.118971 GCTGAGTAATCCCTGTATGATCAATTC 59.881 40.741 0.00 0.00 0.00 2.17
1947 6016 8.267620 TGAGTAATCCCTGTATGATCAATTCT 57.732 34.615 0.00 0.00 0.00 2.40
1948 6017 8.370940 TGAGTAATCCCTGTATGATCAATTCTC 58.629 37.037 0.00 3.73 0.00 2.87
1949 6018 8.503428 AGTAATCCCTGTATGATCAATTCTCT 57.497 34.615 0.00 0.00 0.00 3.10
1950 6019 8.592809 AGTAATCCCTGTATGATCAATTCTCTC 58.407 37.037 0.00 0.00 0.00 3.20
1951 6020 7.384524 AATCCCTGTATGATCAATTCTCTCA 57.615 36.000 0.00 0.00 0.00 3.27
1952 6021 6.813293 TCCCTGTATGATCAATTCTCTCAA 57.187 37.500 0.00 0.00 0.00 3.02
1953 6022 7.199167 TCCCTGTATGATCAATTCTCTCAAA 57.801 36.000 0.00 0.00 0.00 2.69
1954 6023 7.050377 TCCCTGTATGATCAATTCTCTCAAAC 58.950 38.462 0.00 0.00 0.00 2.93
1955 6024 6.825213 CCCTGTATGATCAATTCTCTCAAACA 59.175 38.462 0.00 0.00 0.00 2.83
1956 6025 7.501559 CCCTGTATGATCAATTCTCTCAAACAT 59.498 37.037 0.00 0.00 0.00 2.71
1957 6026 8.900781 CCTGTATGATCAATTCTCTCAAACATT 58.099 33.333 0.00 0.00 0.00 2.71
1962 6031 9.856488 ATGATCAATTCTCTCAAACATTTCTTG 57.144 29.630 0.00 0.00 0.00 3.02
1963 6032 8.301720 TGATCAATTCTCTCAAACATTTCTTGG 58.698 33.333 0.00 0.00 0.00 3.61
1964 6033 6.449698 TCAATTCTCTCAAACATTTCTTGGC 58.550 36.000 0.00 0.00 0.00 4.52
1965 6034 6.040729 TCAATTCTCTCAAACATTTCTTGGCA 59.959 34.615 0.00 0.00 0.00 4.92
1966 6035 5.443185 TTCTCTCAAACATTTCTTGGCAG 57.557 39.130 0.00 0.00 0.00 4.85
1967 6036 3.254166 TCTCTCAAACATTTCTTGGCAGC 59.746 43.478 0.00 0.00 0.00 5.25
1968 6037 2.030893 TCTCAAACATTTCTTGGCAGCG 60.031 45.455 0.00 0.00 0.00 5.18
1969 6038 0.785979 CAAACATTTCTTGGCAGCGC 59.214 50.000 0.00 0.00 0.00 5.92
1970 6039 0.388659 AAACATTTCTTGGCAGCGCA 59.611 45.000 11.47 0.00 0.00 6.09
1971 6040 0.388659 AACATTTCTTGGCAGCGCAA 59.611 45.000 11.47 0.00 0.00 4.85
1972 6041 0.318955 ACATTTCTTGGCAGCGCAAC 60.319 50.000 11.47 0.00 0.00 4.17
1973 6042 1.010419 CATTTCTTGGCAGCGCAACC 61.010 55.000 11.47 11.49 0.00 3.77
1974 6043 1.462731 ATTTCTTGGCAGCGCAACCA 61.463 50.000 16.55 16.55 0.00 3.67
1975 6044 1.670949 TTTCTTGGCAGCGCAACCAA 61.671 50.000 26.43 26.43 43.59 3.67
1976 6045 1.462731 TTCTTGGCAGCGCAACCAAT 61.463 50.000 27.76 0.00 44.67 3.16
1977 6046 1.005867 CTTGGCAGCGCAACCAATT 60.006 52.632 27.76 0.00 44.67 2.32
1978 6047 1.006337 TTGGCAGCGCAACCAATTC 60.006 52.632 25.06 1.13 40.98 2.17
1979 6048 2.125952 GGCAGCGCAACCAATTCC 60.126 61.111 11.47 0.00 0.00 3.01
1980 6049 2.639327 GGCAGCGCAACCAATTCCT 61.639 57.895 11.47 0.00 0.00 3.36
1981 6050 1.444895 GCAGCGCAACCAATTCCTG 60.445 57.895 11.47 0.00 0.00 3.86
1982 6051 1.444895 CAGCGCAACCAATTCCTGC 60.445 57.895 11.47 0.00 0.00 4.85
1983 6052 1.902918 AGCGCAACCAATTCCTGCA 60.903 52.632 11.47 0.00 35.78 4.41
1984 6053 1.444895 GCGCAACCAATTCCTGCAG 60.445 57.895 6.78 6.78 35.78 4.41
1985 6054 1.444895 CGCAACCAATTCCTGCAGC 60.445 57.895 8.66 0.00 35.78 5.25
1986 6055 1.667151 GCAACCAATTCCTGCAGCA 59.333 52.632 8.66 0.00 36.09 4.41
1987 6056 0.033781 GCAACCAATTCCTGCAGCAA 59.966 50.000 8.66 0.00 36.09 3.91
1988 6057 1.338389 GCAACCAATTCCTGCAGCAAT 60.338 47.619 8.66 1.44 36.09 3.56
1989 6058 2.343101 CAACCAATTCCTGCAGCAATG 58.657 47.619 8.66 4.17 0.00 2.82
1990 6059 0.248289 ACCAATTCCTGCAGCAATGC 59.752 50.000 8.66 0.00 0.00 3.56
1991 6060 0.535335 CCAATTCCTGCAGCAATGCT 59.465 50.000 8.66 0.00 40.77 3.79
1992 6061 1.066430 CCAATTCCTGCAGCAATGCTT 60.066 47.619 4.36 0.00 36.40 3.91
1993 6062 2.166870 CCAATTCCTGCAGCAATGCTTA 59.833 45.455 4.36 0.00 36.40 3.09
1994 6063 3.181469 CCAATTCCTGCAGCAATGCTTAT 60.181 43.478 4.36 0.00 36.40 1.73
1995 6064 4.038282 CCAATTCCTGCAGCAATGCTTATA 59.962 41.667 4.36 0.00 36.40 0.98
1996 6065 5.220381 CAATTCCTGCAGCAATGCTTATAG 58.780 41.667 4.36 4.07 36.40 1.31
1997 6066 3.565764 TCCTGCAGCAATGCTTATAGT 57.434 42.857 4.36 0.00 36.40 2.12
1998 6067 4.687901 TCCTGCAGCAATGCTTATAGTA 57.312 40.909 4.36 0.00 36.40 1.82
1999 6068 5.233083 TCCTGCAGCAATGCTTATAGTAT 57.767 39.130 4.36 0.00 36.40 2.12
2000 6069 5.240891 TCCTGCAGCAATGCTTATAGTATC 58.759 41.667 4.36 0.00 36.40 2.24
2001 6070 4.092529 CCTGCAGCAATGCTTATAGTATCG 59.907 45.833 4.36 0.00 36.40 2.92
2002 6071 4.631131 TGCAGCAATGCTTATAGTATCGT 58.369 39.130 4.36 0.00 36.40 3.73
2003 6072 4.686091 TGCAGCAATGCTTATAGTATCGTC 59.314 41.667 4.36 0.00 36.40 4.20
2004 6073 4.926238 GCAGCAATGCTTATAGTATCGTCT 59.074 41.667 4.36 0.00 36.40 4.18
2005 6074 6.093404 GCAGCAATGCTTATAGTATCGTCTA 58.907 40.000 4.36 0.00 36.40 2.59
2006 6075 6.034044 GCAGCAATGCTTATAGTATCGTCTAC 59.966 42.308 4.36 0.00 36.40 2.59
2007 6076 7.309177 CAGCAATGCTTATAGTATCGTCTACT 58.691 38.462 4.36 5.88 36.40 2.57
2008 6077 7.810282 CAGCAATGCTTATAGTATCGTCTACTT 59.190 37.037 4.36 0.00 36.40 2.24
2009 6078 8.024285 AGCAATGCTTATAGTATCGTCTACTTC 58.976 37.037 0.00 0.00 33.89 3.01
2010 6079 7.273815 GCAATGCTTATAGTATCGTCTACTTCC 59.726 40.741 0.00 0.00 0.00 3.46
2011 6080 8.516234 CAATGCTTATAGTATCGTCTACTTCCT 58.484 37.037 5.90 0.00 0.00 3.36
2012 6081 7.670009 TGCTTATAGTATCGTCTACTTCCTC 57.330 40.000 5.90 0.00 0.00 3.71
2013 6082 6.654161 TGCTTATAGTATCGTCTACTTCCTCC 59.346 42.308 5.90 0.00 0.00 4.30
2014 6083 6.183360 GCTTATAGTATCGTCTACTTCCTCCG 60.183 46.154 5.90 0.00 0.00 4.63
2015 6084 3.834489 AGTATCGTCTACTTCCTCCGA 57.166 47.619 0.00 0.00 0.00 4.55
2016 6085 4.354893 AGTATCGTCTACTTCCTCCGAT 57.645 45.455 0.00 0.00 40.86 4.18
2017 6086 4.716794 AGTATCGTCTACTTCCTCCGATT 58.283 43.478 0.00 0.00 38.92 3.34
2018 6087 4.756135 AGTATCGTCTACTTCCTCCGATTC 59.244 45.833 0.00 0.00 38.92 2.52
2019 6088 2.295885 TCGTCTACTTCCTCCGATTCC 58.704 52.381 0.00 0.00 0.00 3.01
2020 6089 2.092538 TCGTCTACTTCCTCCGATTCCT 60.093 50.000 0.00 0.00 0.00 3.36
2021 6090 3.135348 TCGTCTACTTCCTCCGATTCCTA 59.865 47.826 0.00 0.00 0.00 2.94
2022 6091 3.881688 CGTCTACTTCCTCCGATTCCTAA 59.118 47.826 0.00 0.00 0.00 2.69
2023 6092 4.337555 CGTCTACTTCCTCCGATTCCTAAA 59.662 45.833 0.00 0.00 0.00 1.85
2024 6093 5.009811 CGTCTACTTCCTCCGATTCCTAAAT 59.990 44.000 0.00 0.00 0.00 1.40
2025 6094 6.206243 CGTCTACTTCCTCCGATTCCTAAATA 59.794 42.308 0.00 0.00 0.00 1.40
2026 6095 7.094291 CGTCTACTTCCTCCGATTCCTAAATAT 60.094 40.741 0.00 0.00 0.00 1.28
2027 6096 8.586744 GTCTACTTCCTCCGATTCCTAAATATT 58.413 37.037 0.00 0.00 0.00 1.28
2028 6097 9.818270 TCTACTTCCTCCGATTCCTAAATATTA 57.182 33.333 0.00 0.00 0.00 0.98
2030 6099 8.493787 ACTTCCTCCGATTCCTAAATATTAGT 57.506 34.615 0.00 0.00 0.00 2.24
2031 6100 8.586744 ACTTCCTCCGATTCCTAAATATTAGTC 58.413 37.037 0.00 0.00 0.00 2.59
2032 6101 8.486942 TTCCTCCGATTCCTAAATATTAGTCA 57.513 34.615 0.00 0.00 0.00 3.41
2033 6102 8.666129 TCCTCCGATTCCTAAATATTAGTCAT 57.334 34.615 0.00 0.00 0.00 3.06
2034 6103 9.101325 TCCTCCGATTCCTAAATATTAGTCATT 57.899 33.333 0.00 0.00 0.00 2.57
2035 6104 9.726438 CCTCCGATTCCTAAATATTAGTCATTT 57.274 33.333 0.00 0.00 0.00 2.32
2163 6232 8.881262 AGAAACAGAGGGACTAATTTCTAAAGA 58.119 33.333 0.00 0.00 41.55 2.52
2164 6233 9.674068 GAAACAGAGGGACTAATTTCTAAAGAT 57.326 33.333 0.00 0.00 41.55 2.40
2165 6234 9.674068 AAACAGAGGGACTAATTTCTAAAGATC 57.326 33.333 0.00 0.00 41.55 2.75
2166 6235 7.797062 ACAGAGGGACTAATTTCTAAAGATCC 58.203 38.462 0.00 0.00 41.55 3.36
2167 6236 7.403231 ACAGAGGGACTAATTTCTAAAGATCCA 59.597 37.037 0.00 0.00 41.55 3.41
2168 6237 8.435982 CAGAGGGACTAATTTCTAAAGATCCAT 58.564 37.037 0.00 0.00 41.55 3.41
2169 6238 9.676129 AGAGGGACTAATTTCTAAAGATCCATA 57.324 33.333 0.00 0.00 41.55 2.74
2170 6239 9.713713 GAGGGACTAATTTCTAAAGATCCATAC 57.286 37.037 0.00 0.00 41.55 2.39
2171 6240 9.225682 AGGGACTAATTTCTAAAGATCCATACA 57.774 33.333 0.00 0.00 36.02 2.29
2172 6241 9.847224 GGGACTAATTTCTAAAGATCCATACAA 57.153 33.333 0.00 0.00 0.00 2.41
2203 6272 1.102154 CAACTGAACCAGTGCACCAA 58.898 50.000 14.63 0.00 44.62 3.67
2216 6285 5.477510 CAGTGCACCAAGGCAATATTAAAA 58.522 37.500 14.63 0.00 46.93 1.52
2217 6286 5.931146 CAGTGCACCAAGGCAATATTAAAAA 59.069 36.000 14.63 0.00 46.93 1.94
2247 6316 3.060895 CGATGAACCTTTCGTAGCAAGAC 59.939 47.826 0.00 0.00 0.00 3.01
2264 6333 9.903185 GTAGCAAGACGAATAACTTTTAGATTC 57.097 33.333 0.00 0.00 0.00 2.52
2312 6382 6.808212 GCTTAAAATGAGCTAATTTGCAGTCA 59.192 34.615 9.94 9.96 37.18 3.41
2322 6392 6.486657 AGCTAATTTGCAGTCAAGTAAGACAA 59.513 34.615 14.27 0.00 40.98 3.18
2323 6393 7.013274 AGCTAATTTGCAGTCAAGTAAGACAAA 59.987 33.333 14.27 0.00 40.98 2.83
2324 6394 7.647715 GCTAATTTGCAGTCAAGTAAGACAAAA 59.352 33.333 7.02 0.00 40.98 2.44
2325 6395 9.683069 CTAATTTGCAGTCAAGTAAGACAAAAT 57.317 29.630 0.00 0.00 40.98 1.82
2328 6398 9.630098 ATTTGCAGTCAAGTAAGACAAAATATG 57.370 29.630 0.00 0.00 40.98 1.78
2369 6439 1.216064 ATGCTGATTGGTAGGCTCCA 58.784 50.000 0.00 0.00 35.49 3.86
2394 6465 8.293867 CACGAAATATGTTTCTCCCTTTGTTAA 58.706 33.333 12.41 0.00 41.24 2.01
2395 6466 8.294577 ACGAAATATGTTTCTCCCTTTGTTAAC 58.705 33.333 12.41 0.00 41.24 2.01
2522 6593 6.317642 TCAAAACATCGTGTAATAATGAGGGG 59.682 38.462 0.00 0.00 0.00 4.79
2528 6599 4.344102 TCGTGTAATAATGAGGGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
2569 6640 0.960861 ATCTGACGCTGAGACGGTGA 60.961 55.000 0.00 0.00 37.37 4.02
2576 6647 0.861837 GCTGAGACGGTGACAAACTG 59.138 55.000 0.00 0.00 41.37 3.16
2594 6665 8.409358 ACAAACTGCATAATTTCCTAAACTCT 57.591 30.769 0.00 0.00 0.00 3.24
2612 6683 5.796350 ACTCTCACAACAAACACTACAAC 57.204 39.130 0.00 0.00 0.00 3.32
2620 6691 4.616181 ACAAACACTACAACTGTTCTGC 57.384 40.909 0.00 0.00 30.34 4.26
2624 6695 4.137116 ACACTACAACTGTTCTGCTCAA 57.863 40.909 0.00 0.00 0.00 3.02
2628 6699 2.991250 ACAACTGTTCTGCTCAAGTGT 58.009 42.857 0.00 0.00 0.00 3.55
2629 6700 2.679837 ACAACTGTTCTGCTCAAGTGTG 59.320 45.455 0.00 0.00 0.00 3.82
2638 6709 1.340502 TGCTCAAGTGTGGAACCAACA 60.341 47.619 0.00 0.00 34.36 3.33
2639 6710 1.956477 GCTCAAGTGTGGAACCAACAT 59.044 47.619 0.00 0.00 34.36 2.71
2640 6711 2.362077 GCTCAAGTGTGGAACCAACATT 59.638 45.455 0.00 0.00 34.36 2.71
2651 6722 6.048509 GTGGAACCAACATTTTCATCTTGTT 58.951 36.000 0.00 0.00 34.03 2.83
2664 6735 5.047566 TCATCTTGTTTTGAGGTTCTCCA 57.952 39.130 0.00 0.00 35.89 3.86
2666 6737 6.070656 TCATCTTGTTTTGAGGTTCTCCATT 58.929 36.000 0.00 0.00 35.89 3.16
2683 6754 7.524717 TCTCCATTTTTAGAAACCTTTCCAG 57.475 36.000 0.00 0.00 37.92 3.86
2715 6786 8.661352 AGGTTCACCTGAAATTTGTTAATTTG 57.339 30.769 0.00 0.00 46.55 2.32
2717 6788 8.547894 GGTTCACCTGAAATTTGTTAATTTGTC 58.452 33.333 0.00 0.00 42.51 3.18
2722 6793 7.812669 ACCTGAAATTTGTTAATTTGTCCGATC 59.187 33.333 0.00 0.00 42.51 3.69
2727 6798 9.927668 AAATTTGTTAATTTGTCCGATCTTCAT 57.072 25.926 0.00 0.00 41.28 2.57
2731 6802 9.443323 TTGTTAATTTGTCCGATCTTCATTCTA 57.557 29.630 0.00 0.00 0.00 2.10
2737 6808 8.873215 TTTGTCCGATCTTCATTCTAGATAAC 57.127 34.615 0.00 0.00 32.64 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.734984 CGGAGGGAGTACCATTATTAAAAATAT 57.265 33.333 0.00 0.00 43.89 1.28
4 5 8.716779 ACGGAGGGAGTACCATTATTAAAAATA 58.283 33.333 0.00 0.00 43.89 1.40
5 6 7.580007 ACGGAGGGAGTACCATTATTAAAAAT 58.420 34.615 0.00 0.00 43.89 1.82
6 7 6.961042 ACGGAGGGAGTACCATTATTAAAAA 58.039 36.000 0.00 0.00 43.89 1.94
7 8 6.408434 GGACGGAGGGAGTACCATTATTAAAA 60.408 42.308 0.00 0.00 43.89 1.52
8 9 5.070847 GGACGGAGGGAGTACCATTATTAAA 59.929 44.000 0.00 0.00 43.89 1.52
9 10 4.590222 GGACGGAGGGAGTACCATTATTAA 59.410 45.833 0.00 0.00 43.89 1.40
10 11 4.154942 GGACGGAGGGAGTACCATTATTA 58.845 47.826 0.00 0.00 43.89 0.98
11 12 2.970640 GGACGGAGGGAGTACCATTATT 59.029 50.000 0.00 0.00 43.89 1.40
12 13 2.606378 GGACGGAGGGAGTACCATTAT 58.394 52.381 0.00 0.00 43.89 1.28
13 14 1.412074 GGGACGGAGGGAGTACCATTA 60.412 57.143 0.00 0.00 42.20 1.90
14 15 0.690077 GGGACGGAGGGAGTACCATT 60.690 60.000 0.00 0.00 42.20 3.16
15 16 1.075450 GGGACGGAGGGAGTACCAT 60.075 63.158 0.00 0.00 42.20 3.55
16 17 2.361771 GGGACGGAGGGAGTACCA 59.638 66.667 0.00 0.00 42.20 3.25
17 18 0.906282 TTTGGGACGGAGGGAGTACC 60.906 60.000 0.00 0.00 42.94 3.34
18 19 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
19 20 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
20 21 1.558294 GTATTTTGGGACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
21 22 1.838077 AGTATTTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
22 23 1.961133 AGTATTTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
23 24 2.290705 ACAAGTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
24 25 3.067684 ACAAGTATTTTGGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
25 26 5.878116 TGATAACAAGTATTTTGGGACGGAG 59.122 40.000 0.00 0.00 0.00 4.63
26 27 5.806818 TGATAACAAGTATTTTGGGACGGA 58.193 37.500 0.00 0.00 0.00 4.69
27 28 6.503589 TTGATAACAAGTATTTTGGGACGG 57.496 37.500 0.00 0.00 0.00 4.79
28 29 8.859156 CATTTTGATAACAAGTATTTTGGGACG 58.141 33.333 0.00 0.00 37.32 4.79
29 30 9.150348 CCATTTTGATAACAAGTATTTTGGGAC 57.850 33.333 0.00 0.00 37.32 4.46
30 31 9.094578 TCCATTTTGATAACAAGTATTTTGGGA 57.905 29.630 0.00 0.00 37.32 4.37
31 32 9.889128 ATCCATTTTGATAACAAGTATTTTGGG 57.111 29.630 0.00 0.00 37.32 4.12
52 53 9.995003 GTTCAAGATACATCTCTCTTTATCCAT 57.005 33.333 0.00 0.00 35.76 3.41
53 54 9.206690 AGTTCAAGATACATCTCTCTTTATCCA 57.793 33.333 0.00 0.00 35.76 3.41
77 78 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
84 85 9.228949 GGATAAAAGGAGATGTATCTAGACGTA 57.771 37.037 0.00 0.00 37.25 3.57
85 86 7.724506 TGGATAAAAGGAGATGTATCTAGACGT 59.275 37.037 0.00 0.00 37.25 4.34
86 87 8.112016 TGGATAAAAGGAGATGTATCTAGACG 57.888 38.462 0.00 0.00 37.25 4.18
94 95 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
95 96 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
96 97 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
97 98 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
98 99 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
99 100 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
100 101 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
106 107 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
107 108 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
108 109 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
109 110 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
110 111 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
111 112 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
112 113 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
113 114 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
114 115 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
115 116 3.056393 ACGTCCGGAAATACTTGTCATCA 60.056 43.478 5.23 0.00 0.00 3.07
116 117 3.518590 ACGTCCGGAAATACTTGTCATC 58.481 45.455 5.23 0.00 0.00 2.92
117 118 3.604875 ACGTCCGGAAATACTTGTCAT 57.395 42.857 5.23 0.00 0.00 3.06
118 119 3.119388 CCTACGTCCGGAAATACTTGTCA 60.119 47.826 5.23 0.00 0.00 3.58
119 120 3.442100 CCTACGTCCGGAAATACTTGTC 58.558 50.000 5.23 0.00 0.00 3.18
120 121 2.167075 CCCTACGTCCGGAAATACTTGT 59.833 50.000 5.23 0.00 0.00 3.16
121 122 2.428171 TCCCTACGTCCGGAAATACTTG 59.572 50.000 5.23 0.00 0.00 3.16
122 123 2.692041 CTCCCTACGTCCGGAAATACTT 59.308 50.000 5.23 0.00 0.00 2.24
123 124 2.305009 CTCCCTACGTCCGGAAATACT 58.695 52.381 5.23 0.00 0.00 2.12
124 125 2.027385 ACTCCCTACGTCCGGAAATAC 58.973 52.381 5.23 0.00 0.00 1.89
125 126 2.442236 ACTCCCTACGTCCGGAAATA 57.558 50.000 5.23 0.00 0.00 1.40
126 127 2.442236 TACTCCCTACGTCCGGAAAT 57.558 50.000 5.23 0.00 0.00 2.17
127 128 2.442236 ATACTCCCTACGTCCGGAAA 57.558 50.000 5.23 0.00 0.00 3.13
128 129 2.442236 AATACTCCCTACGTCCGGAA 57.558 50.000 5.23 0.00 0.00 4.30
129 130 3.214328 GTTAATACTCCCTACGTCCGGA 58.786 50.000 0.00 0.00 0.00 5.14
130 131 2.951642 TGTTAATACTCCCTACGTCCGG 59.048 50.000 0.00 0.00 0.00 5.14
131 132 4.843220 ATGTTAATACTCCCTACGTCCG 57.157 45.455 0.00 0.00 0.00 4.79
158 159 9.654663 TCACATTCAAAATATTCATGCATTTCA 57.345 25.926 0.00 0.00 0.00 2.69
161 162 9.825109 TCATCACATTCAAAATATTCATGCATT 57.175 25.926 0.00 0.00 0.00 3.56
162 163 9.825109 TTCATCACATTCAAAATATTCATGCAT 57.175 25.926 0.00 0.00 0.00 3.96
163 164 9.825109 ATTCATCACATTCAAAATATTCATGCA 57.175 25.926 0.00 0.00 0.00 3.96
180 181 9.978044 TGTCATTCAAAAACATTATTCATCACA 57.022 25.926 0.00 0.00 0.00 3.58
250 251 9.603921 AGTTTCTTCATGACATTTCAAACAATT 57.396 25.926 0.00 0.00 34.61 2.32
251 252 9.603921 AAGTTTCTTCATGACATTTCAAACAAT 57.396 25.926 0.00 0.00 34.61 2.71
252 253 9.434420 AAAGTTTCTTCATGACATTTCAAACAA 57.566 25.926 0.00 0.00 34.61 2.83
253 254 9.086336 GAAAGTTTCTTCATGACATTTCAAACA 57.914 29.630 8.41 0.00 34.61 2.83
254 255 9.305925 AGAAAGTTTCTTCATGACATTTCAAAC 57.694 29.630 12.50 0.00 36.36 2.93
360 361 7.954788 ACAAAAAGTTCAAGCAGTGTAAAAA 57.045 28.000 0.00 0.00 0.00 1.94
361 362 9.477484 TTTACAAAAAGTTCAAGCAGTGTAAAA 57.523 25.926 0.00 0.00 37.30 1.52
362 363 9.646427 ATTTACAAAAAGTTCAAGCAGTGTAAA 57.354 25.926 7.79 7.79 41.66 2.01
363 364 9.081997 CATTTACAAAAAGTTCAAGCAGTGTAA 57.918 29.630 0.00 0.00 0.00 2.41
364 365 7.221838 GCATTTACAAAAAGTTCAAGCAGTGTA 59.778 33.333 0.00 0.00 0.00 2.90
365 366 6.035975 GCATTTACAAAAAGTTCAAGCAGTGT 59.964 34.615 0.00 0.00 0.00 3.55
366 367 6.413269 GCATTTACAAAAAGTTCAAGCAGTG 58.587 36.000 0.00 0.00 0.00 3.66
367 368 5.231991 CGCATTTACAAAAAGTTCAAGCAGT 59.768 36.000 0.00 0.00 0.00 4.40
368 369 5.231991 ACGCATTTACAAAAAGTTCAAGCAG 59.768 36.000 0.00 0.00 0.00 4.24
369 370 5.105752 ACGCATTTACAAAAAGTTCAAGCA 58.894 33.333 0.00 0.00 0.00 3.91
370 371 5.635549 ACGCATTTACAAAAAGTTCAAGC 57.364 34.783 0.00 0.00 0.00 4.01
371 372 7.164498 TCGTTACGCATTTACAAAAAGTTCAAG 59.836 33.333 0.00 0.00 0.00 3.02
372 373 6.965500 TCGTTACGCATTTACAAAAAGTTCAA 59.035 30.769 0.00 0.00 0.00 2.69
373 374 6.484540 TCGTTACGCATTTACAAAAAGTTCA 58.515 32.000 0.00 0.00 0.00 3.18
374 375 6.397171 GCTCGTTACGCATTTACAAAAAGTTC 60.397 38.462 0.00 0.00 0.00 3.01
375 376 5.397240 GCTCGTTACGCATTTACAAAAAGTT 59.603 36.000 0.00 0.00 0.00 2.66
376 377 4.907582 GCTCGTTACGCATTTACAAAAAGT 59.092 37.500 0.00 0.00 0.00 2.66
377 378 4.027556 CGCTCGTTACGCATTTACAAAAAG 59.972 41.667 0.00 0.00 0.00 2.27
378 379 3.901290 CGCTCGTTACGCATTTACAAAAA 59.099 39.130 0.00 0.00 0.00 1.94
379 380 3.471495 CGCTCGTTACGCATTTACAAAA 58.529 40.909 0.00 0.00 0.00 2.44
380 381 3.092995 CGCTCGTTACGCATTTACAAA 57.907 42.857 0.00 0.00 0.00 2.83
381 382 2.773036 CGCTCGTTACGCATTTACAA 57.227 45.000 0.00 0.00 0.00 2.41
390 391 5.337512 TCAAATTTTAAAAGCGCTCGTTACG 59.662 36.000 12.06 0.00 0.00 3.18
391 392 6.663480 TCAAATTTTAAAAGCGCTCGTTAC 57.337 33.333 12.06 0.00 0.00 2.50
392 393 6.913673 ACTTCAAATTTTAAAAGCGCTCGTTA 59.086 30.769 12.06 10.06 0.00 3.18
393 394 5.746721 ACTTCAAATTTTAAAAGCGCTCGTT 59.253 32.000 12.06 11.22 0.00 3.85
394 395 5.278604 ACTTCAAATTTTAAAAGCGCTCGT 58.721 33.333 12.06 3.77 0.00 4.18
395 396 5.806089 ACTTCAAATTTTAAAAGCGCTCG 57.194 34.783 12.06 0.00 0.00 5.03
521 522 9.359653 CCCATAACTGATCTTTCCATTAGATTT 57.640 33.333 0.00 0.00 32.64 2.17
522 523 7.449704 GCCCATAACTGATCTTTCCATTAGATT 59.550 37.037 0.00 0.00 32.64 2.40
523 524 6.944862 GCCCATAACTGATCTTTCCATTAGAT 59.055 38.462 0.00 0.00 35.12 1.98
524 525 6.299141 GCCCATAACTGATCTTTCCATTAGA 58.701 40.000 0.00 0.00 0.00 2.10
525 526 5.474876 GGCCCATAACTGATCTTTCCATTAG 59.525 44.000 0.00 0.00 0.00 1.73
526 527 5.385198 GGCCCATAACTGATCTTTCCATTA 58.615 41.667 0.00 0.00 0.00 1.90
527 528 4.218312 GGCCCATAACTGATCTTTCCATT 58.782 43.478 0.00 0.00 0.00 3.16
528 529 3.748668 CGGCCCATAACTGATCTTTCCAT 60.749 47.826 0.00 0.00 0.00 3.41
529 530 2.421388 CGGCCCATAACTGATCTTTCCA 60.421 50.000 0.00 0.00 0.00 3.53
530 531 2.222027 CGGCCCATAACTGATCTTTCC 58.778 52.381 0.00 0.00 0.00 3.13
531 532 1.604278 GCGGCCCATAACTGATCTTTC 59.396 52.381 0.00 0.00 0.00 2.62
532 533 1.680338 GCGGCCCATAACTGATCTTT 58.320 50.000 0.00 0.00 0.00 2.52
533 534 0.532862 CGCGGCCCATAACTGATCTT 60.533 55.000 0.00 0.00 0.00 2.40
534 535 1.069765 CGCGGCCCATAACTGATCT 59.930 57.895 0.00 0.00 0.00 2.75
535 536 1.222115 GACGCGGCCCATAACTGATC 61.222 60.000 12.47 0.00 0.00 2.92
536 537 1.227556 GACGCGGCCCATAACTGAT 60.228 57.895 12.47 0.00 0.00 2.90
537 538 2.185867 GACGCGGCCCATAACTGA 59.814 61.111 12.47 0.00 0.00 3.41
538 539 2.895372 GGACGCGGCCCATAACTG 60.895 66.667 24.25 0.00 0.00 3.16
539 540 4.524318 CGGACGCGGCCCATAACT 62.524 66.667 28.87 0.00 0.00 2.24
540 541 4.825252 ACGGACGCGGCCCATAAC 62.825 66.667 28.87 0.00 0.00 1.89
541 542 4.517815 GACGGACGCGGCCCATAA 62.518 66.667 28.87 0.00 0.00 1.90
556 557 2.758770 TTACACTGACGCGCCCAGAC 62.759 60.000 28.34 4.14 35.69 3.51
557 558 2.486636 CTTACACTGACGCGCCCAGA 62.487 60.000 28.34 9.71 35.69 3.86
558 559 2.048597 TTACACTGACGCGCCCAG 60.049 61.111 22.43 22.43 37.64 4.45
559 560 2.048597 CTTACACTGACGCGCCCA 60.049 61.111 5.73 3.35 0.00 5.36
560 561 2.813908 CCTTACACTGACGCGCCC 60.814 66.667 5.73 0.00 0.00 6.13
561 562 2.813908 CCCTTACACTGACGCGCC 60.814 66.667 5.73 0.00 0.00 6.53
562 563 1.805945 CTCCCTTACACTGACGCGC 60.806 63.158 5.73 0.00 0.00 6.86
563 564 1.805945 GCTCCCTTACACTGACGCG 60.806 63.158 3.53 3.53 0.00 6.01
564 565 1.805945 CGCTCCCTTACACTGACGC 60.806 63.158 0.00 0.00 0.00 5.19
565 566 1.805945 GCGCTCCCTTACACTGACG 60.806 63.158 0.00 0.00 0.00 4.35
566 567 0.320421 TTGCGCTCCCTTACACTGAC 60.320 55.000 9.73 0.00 0.00 3.51
567 568 0.394938 TTTGCGCTCCCTTACACTGA 59.605 50.000 9.73 0.00 0.00 3.41
568 569 0.798776 CTTTGCGCTCCCTTACACTG 59.201 55.000 9.73 0.00 0.00 3.66
569 570 0.955919 GCTTTGCGCTCCCTTACACT 60.956 55.000 9.73 0.00 35.14 3.55
570 571 1.234615 TGCTTTGCGCTCCCTTACAC 61.235 55.000 9.73 0.00 40.11 2.90
571 572 0.955428 CTGCTTTGCGCTCCCTTACA 60.955 55.000 9.73 0.00 40.11 2.41
572 573 1.796796 CTGCTTTGCGCTCCCTTAC 59.203 57.895 9.73 0.00 40.11 2.34
573 574 2.040544 GCTGCTTTGCGCTCCCTTA 61.041 57.895 9.73 0.00 40.11 2.69
574 575 3.368571 GCTGCTTTGCGCTCCCTT 61.369 61.111 9.73 0.00 40.11 3.95
575 576 3.857309 AAGCTGCTTTGCGCTCCCT 62.857 57.895 9.53 0.00 37.41 4.20
576 577 3.368571 AAGCTGCTTTGCGCTCCC 61.369 61.111 9.53 0.00 37.41 4.30
577 578 2.126580 CAAGCTGCTTTGCGCTCC 60.127 61.111 13.10 0.00 37.41 4.70
578 579 2.126580 CCAAGCTGCTTTGCGCTC 60.127 61.111 13.10 0.00 37.41 5.03
579 580 2.908940 ACCAAGCTGCTTTGCGCT 60.909 55.556 13.10 3.84 39.22 5.92
580 581 2.429739 GACCAAGCTGCTTTGCGC 60.430 61.111 13.10 0.00 38.13 6.09
581 582 2.074230 TTGGACCAAGCTGCTTTGCG 62.074 55.000 13.10 5.78 38.13 4.85
582 583 0.104671 TTTGGACCAAGCTGCTTTGC 59.895 50.000 13.10 5.37 0.00 3.68
583 584 2.600470 TTTTGGACCAAGCTGCTTTG 57.400 45.000 13.10 12.21 0.00 2.77
584 585 3.843893 AATTTTGGACCAAGCTGCTTT 57.156 38.095 13.10 0.00 0.00 3.51
585 586 3.134442 TCAAATTTTGGACCAAGCTGCTT 59.866 39.130 9.53 9.53 0.00 3.91
586 587 2.699846 TCAAATTTTGGACCAAGCTGCT 59.300 40.909 7.07 0.00 0.00 4.24
587 588 3.110447 TCAAATTTTGGACCAAGCTGC 57.890 42.857 7.07 0.00 0.00 5.25
588 589 4.696455 ACTTCAAATTTTGGACCAAGCTG 58.304 39.130 7.07 4.12 0.00 4.24
589 590 5.357742 AACTTCAAATTTTGGACCAAGCT 57.642 34.783 7.07 0.00 0.00 3.74
590 591 6.128035 ACAAAACTTCAAATTTTGGACCAAGC 60.128 34.615 8.80 0.00 46.64 4.01
591 592 7.376435 ACAAAACTTCAAATTTTGGACCAAG 57.624 32.000 8.80 7.76 46.64 3.61
592 593 7.751768 AACAAAACTTCAAATTTTGGACCAA 57.248 28.000 8.80 1.69 46.64 3.67
593 594 7.751768 AAACAAAACTTCAAATTTTGGACCA 57.248 28.000 8.80 0.00 46.64 4.02
594 595 8.910666 CAAAAACAAAACTTCAAATTTTGGACC 58.089 29.630 8.80 0.00 46.64 4.46
595 596 9.670719 TCAAAAACAAAACTTCAAATTTTGGAC 57.329 25.926 8.80 0.00 46.64 4.02
596 597 9.890352 CTCAAAAACAAAACTTCAAATTTTGGA 57.110 25.926 8.80 0.00 46.64 3.53
597 598 9.127006 CCTCAAAAACAAAACTTCAAATTTTGG 57.873 29.630 8.80 0.00 46.64 3.28
599 600 8.303156 CCCCTCAAAAACAAAACTTCAAATTTT 58.697 29.630 0.00 0.00 0.00 1.82
600 601 7.450014 ACCCCTCAAAAACAAAACTTCAAATTT 59.550 29.630 0.00 0.00 0.00 1.82
601 602 6.945435 ACCCCTCAAAAACAAAACTTCAAATT 59.055 30.769 0.00 0.00 0.00 1.82
602 603 6.374053 CACCCCTCAAAAACAAAACTTCAAAT 59.626 34.615 0.00 0.00 0.00 2.32
603 604 5.703130 CACCCCTCAAAAACAAAACTTCAAA 59.297 36.000 0.00 0.00 0.00 2.69
604 605 5.221742 ACACCCCTCAAAAACAAAACTTCAA 60.222 36.000 0.00 0.00 0.00 2.69
605 606 4.284746 ACACCCCTCAAAAACAAAACTTCA 59.715 37.500 0.00 0.00 0.00 3.02
606 607 4.827692 ACACCCCTCAAAAACAAAACTTC 58.172 39.130 0.00 0.00 0.00 3.01
607 608 4.323180 GGACACCCCTCAAAAACAAAACTT 60.323 41.667 0.00 0.00 0.00 2.66
608 609 3.196901 GGACACCCCTCAAAAACAAAACT 59.803 43.478 0.00 0.00 0.00 2.66
609 610 3.055747 TGGACACCCCTCAAAAACAAAAC 60.056 43.478 0.00 0.00 35.38 2.43
610 611 3.173965 TGGACACCCCTCAAAAACAAAA 58.826 40.909 0.00 0.00 35.38 2.44
611 612 2.821437 TGGACACCCCTCAAAAACAAA 58.179 42.857 0.00 0.00 35.38 2.83
612 613 2.534042 TGGACACCCCTCAAAAACAA 57.466 45.000 0.00 0.00 35.38 2.83
613 614 2.534042 TTGGACACCCCTCAAAAACA 57.466 45.000 0.00 0.00 35.38 2.83
614 615 3.897141 TTTTGGACACCCCTCAAAAAC 57.103 42.857 0.00 0.00 37.41 2.43
615 616 5.045578 TCAAATTTTGGACACCCCTCAAAAA 60.046 36.000 9.18 0.00 41.63 1.94
616 617 4.471386 TCAAATTTTGGACACCCCTCAAAA 59.529 37.500 9.18 0.00 42.22 2.44
617 618 4.033709 TCAAATTTTGGACACCCCTCAAA 58.966 39.130 9.18 0.00 35.38 2.69
618 619 3.647636 TCAAATTTTGGACACCCCTCAA 58.352 40.909 9.18 0.00 35.38 3.02
619 620 3.320610 TCAAATTTTGGACACCCCTCA 57.679 42.857 9.18 0.00 35.38 3.86
620 621 3.641436 ACTTCAAATTTTGGACACCCCTC 59.359 43.478 9.18 0.00 35.38 4.30
621 622 3.653164 ACTTCAAATTTTGGACACCCCT 58.347 40.909 9.18 0.00 35.38 4.79
622 623 5.538849 TTACTTCAAATTTTGGACACCCC 57.461 39.130 9.18 0.00 0.00 4.95
623 624 6.073276 GCATTTACTTCAAATTTTGGACACCC 60.073 38.462 9.18 0.00 34.49 4.61
624 625 6.346518 CGCATTTACTTCAAATTTTGGACACC 60.347 38.462 9.18 0.00 34.49 4.16
625 626 6.419413 TCGCATTTACTTCAAATTTTGGACAC 59.581 34.615 9.18 0.00 34.49 3.67
626 627 6.507900 TCGCATTTACTTCAAATTTTGGACA 58.492 32.000 9.18 0.00 34.49 4.02
627 628 6.861055 TCTCGCATTTACTTCAAATTTTGGAC 59.139 34.615 9.18 0.00 34.49 4.02
628 629 6.976088 TCTCGCATTTACTTCAAATTTTGGA 58.024 32.000 9.18 0.00 34.49 3.53
629 630 7.619982 GCTTCTCGCATTTACTTCAAATTTTGG 60.620 37.037 9.18 0.00 34.49 3.28
630 631 7.096106 TGCTTCTCGCATTTACTTCAAATTTTG 60.096 33.333 2.59 2.59 45.47 2.44
631 632 6.922957 TGCTTCTCGCATTTACTTCAAATTTT 59.077 30.769 0.00 0.00 45.47 1.82
632 633 6.446318 TGCTTCTCGCATTTACTTCAAATTT 58.554 32.000 0.00 0.00 45.47 1.82
633 634 6.012658 TGCTTCTCGCATTTACTTCAAATT 57.987 33.333 0.00 0.00 45.47 1.82
634 635 5.627499 TGCTTCTCGCATTTACTTCAAAT 57.373 34.783 0.00 0.00 45.47 2.32
647 648 3.191539 CTCGGCCTTGCTTCTCGC 61.192 66.667 0.00 0.00 39.77 5.03
648 649 2.303549 ATCCTCGGCCTTGCTTCTCG 62.304 60.000 0.00 0.00 0.00 4.04
649 650 0.813210 CATCCTCGGCCTTGCTTCTC 60.813 60.000 0.00 0.00 0.00 2.87
650 651 1.222936 CATCCTCGGCCTTGCTTCT 59.777 57.895 0.00 0.00 0.00 2.85
651 652 0.392998 TTCATCCTCGGCCTTGCTTC 60.393 55.000 0.00 0.00 0.00 3.86
652 653 0.257039 ATTCATCCTCGGCCTTGCTT 59.743 50.000 0.00 0.00 0.00 3.91
653 654 0.257039 AATTCATCCTCGGCCTTGCT 59.743 50.000 0.00 0.00 0.00 3.91
654 655 1.106285 AAATTCATCCTCGGCCTTGC 58.894 50.000 0.00 0.00 0.00 4.01
655 656 2.493278 ACAAAATTCATCCTCGGCCTTG 59.507 45.455 0.00 0.00 0.00 3.61
656 657 2.493278 CACAAAATTCATCCTCGGCCTT 59.507 45.455 0.00 0.00 0.00 4.35
657 658 2.094675 CACAAAATTCATCCTCGGCCT 58.905 47.619 0.00 0.00 0.00 5.19
658 659 1.469767 GCACAAAATTCATCCTCGGCC 60.470 52.381 0.00 0.00 0.00 6.13
659 660 1.474077 AGCACAAAATTCATCCTCGGC 59.526 47.619 0.00 0.00 0.00 5.54
660 661 3.012518 AGAGCACAAAATTCATCCTCGG 58.987 45.455 0.00 0.00 0.00 4.63
661 662 3.686241 TGAGAGCACAAAATTCATCCTCG 59.314 43.478 0.00 0.00 0.00 4.63
662 663 4.699257 ACTGAGAGCACAAAATTCATCCTC 59.301 41.667 0.00 0.00 0.00 3.71
663 664 4.660168 ACTGAGAGCACAAAATTCATCCT 58.340 39.130 0.00 0.00 0.00 3.24
664 665 5.159209 CAACTGAGAGCACAAAATTCATCC 58.841 41.667 0.00 0.00 0.00 3.51
665 666 5.159209 CCAACTGAGAGCACAAAATTCATC 58.841 41.667 0.00 0.00 0.00 2.92
666 667 4.021719 CCCAACTGAGAGCACAAAATTCAT 60.022 41.667 0.00 0.00 0.00 2.57
667 668 3.318839 CCCAACTGAGAGCACAAAATTCA 59.681 43.478 0.00 0.00 0.00 2.57
668 669 3.858503 GCCCAACTGAGAGCACAAAATTC 60.859 47.826 0.00 0.00 0.00 2.17
669 670 2.036346 GCCCAACTGAGAGCACAAAATT 59.964 45.455 0.00 0.00 0.00 1.82
670 671 1.615392 GCCCAACTGAGAGCACAAAAT 59.385 47.619 0.00 0.00 0.00 1.82
671 672 1.032014 GCCCAACTGAGAGCACAAAA 58.968 50.000 0.00 0.00 0.00 2.44
672 673 0.183492 AGCCCAACTGAGAGCACAAA 59.817 50.000 0.00 0.00 0.00 2.83
673 674 1.839191 AGCCCAACTGAGAGCACAA 59.161 52.632 0.00 0.00 0.00 3.33
674 675 3.567308 AGCCCAACTGAGAGCACA 58.433 55.556 0.00 0.00 0.00 4.57
695 696 1.449246 CTTTGCGCTCCCTGAGAGG 60.449 63.158 9.73 0.00 43.46 3.69
696 697 2.105466 GCTTTGCGCTCCCTGAGAG 61.105 63.158 9.73 0.00 46.29 3.20
697 698 2.046892 GCTTTGCGCTCCCTGAGA 60.047 61.111 9.73 0.00 35.14 3.27
698 699 2.359107 TGCTTTGCGCTCCCTGAG 60.359 61.111 9.73 0.00 40.11 3.35
699 700 2.359107 CTGCTTTGCGCTCCCTGA 60.359 61.111 9.73 0.00 40.11 3.86
700 701 4.112341 GCTGCTTTGCGCTCCCTG 62.112 66.667 9.73 0.00 40.11 4.45
701 702 4.341783 AGCTGCTTTGCGCTCCCT 62.342 61.111 9.73 0.00 40.11 4.20
702 703 3.808656 GAGCTGCTTTGCGCTCCC 61.809 66.667 9.73 0.00 43.53 4.30
703 704 3.036783 CTGAGCTGCTTTGCGCTCC 62.037 63.158 22.58 12.26 46.18 4.70
704 705 2.238071 GACTGAGCTGCTTTGCGCTC 62.238 60.000 20.47 20.47 46.56 5.03
705 706 2.281345 ACTGAGCTGCTTTGCGCT 60.281 55.556 9.73 8.15 39.91 5.92
706 707 1.919956 ATGACTGAGCTGCTTTGCGC 61.920 55.000 2.53 0.00 38.13 6.09
707 708 0.179197 CATGACTGAGCTGCTTTGCG 60.179 55.000 2.53 0.00 38.13 4.85
708 709 1.162698 TCATGACTGAGCTGCTTTGC 58.837 50.000 2.53 0.00 0.00 3.68
709 710 2.161808 CCTTCATGACTGAGCTGCTTTG 59.838 50.000 2.53 2.28 31.68 2.77
710 711 2.224719 ACCTTCATGACTGAGCTGCTTT 60.225 45.455 2.53 0.00 31.68 3.51
711 712 1.350351 ACCTTCATGACTGAGCTGCTT 59.650 47.619 2.53 0.00 31.68 3.91
712 713 0.982704 ACCTTCATGACTGAGCTGCT 59.017 50.000 0.00 0.00 31.68 4.24
713 714 2.093764 AGTACCTTCATGACTGAGCTGC 60.094 50.000 0.00 0.00 31.68 5.25
714 715 3.519579 CAGTACCTTCATGACTGAGCTG 58.480 50.000 5.74 4.07 42.65 4.24
715 716 2.499289 CCAGTACCTTCATGACTGAGCT 59.501 50.000 11.90 0.00 42.65 4.09
716 717 2.234908 ACCAGTACCTTCATGACTGAGC 59.765 50.000 11.90 0.00 42.65 4.26
717 718 3.428180 CGACCAGTACCTTCATGACTGAG 60.428 52.174 11.90 0.00 42.65 3.35
718 719 2.492088 CGACCAGTACCTTCATGACTGA 59.508 50.000 11.90 0.00 42.65 3.41
719 720 2.231478 ACGACCAGTACCTTCATGACTG 59.769 50.000 0.00 0.00 40.26 3.51
720 721 2.231478 CACGACCAGTACCTTCATGACT 59.769 50.000 0.00 0.00 0.00 3.41
721 722 2.029290 ACACGACCAGTACCTTCATGAC 60.029 50.000 0.00 0.00 0.00 3.06
722 723 2.230508 GACACGACCAGTACCTTCATGA 59.769 50.000 0.00 0.00 0.00 3.07
723 724 2.607187 GACACGACCAGTACCTTCATG 58.393 52.381 0.00 0.00 0.00 3.07
724 725 1.549170 GGACACGACCAGTACCTTCAT 59.451 52.381 0.00 0.00 0.00 2.57
725 726 0.963962 GGACACGACCAGTACCTTCA 59.036 55.000 0.00 0.00 0.00 3.02
726 727 0.963962 TGGACACGACCAGTACCTTC 59.036 55.000 0.00 0.00 34.77 3.46
727 728 1.275291 CATGGACACGACCAGTACCTT 59.725 52.381 0.00 0.00 43.49 3.50
728 729 0.895530 CATGGACACGACCAGTACCT 59.104 55.000 0.00 0.00 43.49 3.08
729 730 0.606604 ACATGGACACGACCAGTACC 59.393 55.000 0.00 0.00 43.49 3.34
989 1010 0.884704 GTCCGCCATGAGTTGTGTGT 60.885 55.000 0.00 0.00 0.00 3.72
993 1014 2.742372 GCGTCCGCCATGAGTTGT 60.742 61.111 0.00 0.00 34.56 3.32
1081 1102 1.183676 ACGACGGCCTTGGACTTAGT 61.184 55.000 0.00 0.00 0.00 2.24
1083 1104 1.588082 GACGACGGCCTTGGACTTA 59.412 57.895 0.00 0.00 0.00 2.24
1266 1293 1.257750 CGGAGTCCATGGTCAGGTCA 61.258 60.000 12.58 0.00 0.00 4.02
1386 1413 1.017177 GCATGGACGCGTAGTTTGGA 61.017 55.000 13.97 0.00 0.00 3.53
1407 1434 1.583967 CGTCGTGCTAGCTCCGAAG 60.584 63.158 24.67 22.77 31.68 3.79
1413 1440 0.464735 AGATCTCCGTCGTGCTAGCT 60.465 55.000 17.23 0.00 0.00 3.32
1416 1443 1.022735 GGAAGATCTCCGTCGTGCTA 58.977 55.000 0.00 0.00 33.37 3.49
1494 1521 2.035312 ACTCGGCTGGTACTCCGT 59.965 61.111 16.82 1.99 43.27 4.69
1498 1525 4.436998 GCGCACTCGGCTGGTACT 62.437 66.667 0.30 0.00 41.67 2.73
1519 1546 4.261888 GACGAACACGTCCATGCT 57.738 55.556 10.96 0.00 46.91 3.79
1560 1587 4.760047 CCGAACAGCACCTCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
1719 1746 1.379916 CACACATGAAGGGGAGCCA 59.620 57.895 0.00 0.00 0.00 4.75
1725 1752 1.746615 CTCCGCCACACATGAAGGG 60.747 63.158 0.00 0.00 0.00 3.95
1749 1776 1.263484 GCATTGAGATGATGTCAGCGG 59.737 52.381 0.00 0.00 37.34 5.52
1782 5851 1.021390 AACAGAGTAGCGGCACATGC 61.021 55.000 1.45 0.00 41.14 4.06
1797 5866 5.049398 AGAGAAACTGCTAGTACGAACAG 57.951 43.478 5.01 5.01 36.22 3.16
1799 5868 6.398726 CGAAAAGAGAAACTGCTAGTACGAAC 60.399 42.308 0.00 0.00 0.00 3.95
1800 5869 5.628193 CGAAAAGAGAAACTGCTAGTACGAA 59.372 40.000 0.00 0.00 0.00 3.85
1816 5885 2.488153 GGGTTTGGATGACCGAAAAGAG 59.512 50.000 0.00 0.00 40.78 2.85
1817 5886 2.107552 AGGGTTTGGATGACCGAAAAGA 59.892 45.455 0.00 0.00 40.78 2.52
1818 5887 2.488153 GAGGGTTTGGATGACCGAAAAG 59.512 50.000 0.00 0.00 40.78 2.27
1823 5892 1.077716 GGGAGGGTTTGGATGACCG 60.078 63.158 0.00 0.00 38.08 4.79
1824 5893 0.034089 CAGGGAGGGTTTGGATGACC 60.034 60.000 0.00 0.00 36.41 4.02
1840 5909 2.907897 GATTCGTCTCACGGGGCAGG 62.908 65.000 0.00 0.00 42.81 4.85
1851 5920 4.248859 CAAAGATGGTGTCAGATTCGTCT 58.751 43.478 0.00 0.00 0.00 4.18
1907 5976 5.453480 GGATTACTCAGCCGGAAGTTAGAAT 60.453 44.000 5.05 2.05 0.00 2.40
1908 5977 4.142004 GGATTACTCAGCCGGAAGTTAGAA 60.142 45.833 5.05 0.00 0.00 2.10
1909 5978 3.383825 GGATTACTCAGCCGGAAGTTAGA 59.616 47.826 5.05 0.00 0.00 2.10
1910 5979 3.492829 GGGATTACTCAGCCGGAAGTTAG 60.493 52.174 5.05 0.00 0.00 2.34
1911 5980 2.433239 GGGATTACTCAGCCGGAAGTTA 59.567 50.000 5.05 0.00 0.00 2.24
1912 5981 1.209747 GGGATTACTCAGCCGGAAGTT 59.790 52.381 5.05 0.00 0.00 2.66
1913 5982 0.831307 GGGATTACTCAGCCGGAAGT 59.169 55.000 5.05 7.81 0.00 3.01
1914 5983 1.123928 AGGGATTACTCAGCCGGAAG 58.876 55.000 5.05 0.59 0.00 3.46
1915 5984 0.830648 CAGGGATTACTCAGCCGGAA 59.169 55.000 5.05 0.00 0.00 4.30
1916 5985 0.325296 ACAGGGATTACTCAGCCGGA 60.325 55.000 5.05 0.00 0.00 5.14
1917 5986 1.410004 TACAGGGATTACTCAGCCGG 58.590 55.000 0.00 0.00 0.00 6.13
1918 5987 2.628178 TCATACAGGGATTACTCAGCCG 59.372 50.000 0.00 0.00 0.00 5.52
1919 5988 4.284490 TGATCATACAGGGATTACTCAGCC 59.716 45.833 0.00 0.00 0.00 4.85
1920 5989 5.474578 TGATCATACAGGGATTACTCAGC 57.525 43.478 0.00 0.00 0.00 4.26
1921 5990 8.373981 AGAATTGATCATACAGGGATTACTCAG 58.626 37.037 0.00 0.00 0.00 3.35
1922 5991 8.267620 AGAATTGATCATACAGGGATTACTCA 57.732 34.615 0.00 0.00 0.00 3.41
1923 5992 8.592809 AGAGAATTGATCATACAGGGATTACTC 58.407 37.037 0.00 1.86 0.00 2.59
1924 5993 8.503428 AGAGAATTGATCATACAGGGATTACT 57.497 34.615 0.00 0.00 0.00 2.24
1925 5994 8.370940 TGAGAGAATTGATCATACAGGGATTAC 58.629 37.037 0.00 0.00 0.00 1.89
1926 5995 8.496534 TGAGAGAATTGATCATACAGGGATTA 57.503 34.615 0.00 0.00 0.00 1.75
1927 5996 7.384524 TGAGAGAATTGATCATACAGGGATT 57.615 36.000 0.00 0.00 0.00 3.01
1928 5997 7.384524 TTGAGAGAATTGATCATACAGGGAT 57.615 36.000 0.00 0.00 0.00 3.85
1929 5998 6.813293 TTGAGAGAATTGATCATACAGGGA 57.187 37.500 0.00 0.00 0.00 4.20
1930 5999 6.825213 TGTTTGAGAGAATTGATCATACAGGG 59.175 38.462 0.00 0.00 32.40 4.45
1931 6000 7.854557 TGTTTGAGAGAATTGATCATACAGG 57.145 36.000 0.00 0.00 32.40 4.00
1936 6005 9.856488 CAAGAAATGTTTGAGAGAATTGATCAT 57.144 29.630 0.00 0.00 0.00 2.45
1937 6006 8.301720 CCAAGAAATGTTTGAGAGAATTGATCA 58.698 33.333 0.00 0.00 0.00 2.92
1938 6007 7.275123 GCCAAGAAATGTTTGAGAGAATTGATC 59.725 37.037 0.00 0.00 0.00 2.92
1939 6008 7.095270 GCCAAGAAATGTTTGAGAGAATTGAT 58.905 34.615 0.00 0.00 0.00 2.57
1940 6009 6.040729 TGCCAAGAAATGTTTGAGAGAATTGA 59.959 34.615 0.00 0.00 0.00 2.57
1941 6010 6.218019 TGCCAAGAAATGTTTGAGAGAATTG 58.782 36.000 0.00 0.00 0.00 2.32
1942 6011 6.409524 TGCCAAGAAATGTTTGAGAGAATT 57.590 33.333 0.00 0.00 0.00 2.17
1943 6012 5.566230 GCTGCCAAGAAATGTTTGAGAGAAT 60.566 40.000 0.00 0.00 0.00 2.40
1944 6013 4.261741 GCTGCCAAGAAATGTTTGAGAGAA 60.262 41.667 0.00 0.00 0.00 2.87
1945 6014 3.254166 GCTGCCAAGAAATGTTTGAGAGA 59.746 43.478 0.00 0.00 0.00 3.10
1946 6015 3.572584 GCTGCCAAGAAATGTTTGAGAG 58.427 45.455 0.00 0.00 0.00 3.20
1947 6016 2.030893 CGCTGCCAAGAAATGTTTGAGA 60.031 45.455 0.00 0.00 0.00 3.27
1948 6017 2.322161 CGCTGCCAAGAAATGTTTGAG 58.678 47.619 0.00 0.00 0.00 3.02
1949 6018 1.602668 GCGCTGCCAAGAAATGTTTGA 60.603 47.619 0.00 0.00 0.00 2.69
1950 6019 0.785979 GCGCTGCCAAGAAATGTTTG 59.214 50.000 0.00 0.00 0.00 2.93
1951 6020 0.388659 TGCGCTGCCAAGAAATGTTT 59.611 45.000 9.73 0.00 0.00 2.83
1952 6021 0.388659 TTGCGCTGCCAAGAAATGTT 59.611 45.000 9.73 0.00 0.00 2.71
1953 6022 0.318955 GTTGCGCTGCCAAGAAATGT 60.319 50.000 9.73 0.00 0.00 2.71
1954 6023 1.010419 GGTTGCGCTGCCAAGAAATG 61.010 55.000 9.73 0.00 0.00 2.32
1955 6024 1.290009 GGTTGCGCTGCCAAGAAAT 59.710 52.632 9.73 0.00 0.00 2.17
1956 6025 1.670949 TTGGTTGCGCTGCCAAGAAA 61.671 50.000 24.87 9.61 39.57 2.52
1957 6026 1.462731 ATTGGTTGCGCTGCCAAGAA 61.463 50.000 29.34 15.59 46.41 2.52
1958 6027 1.462731 AATTGGTTGCGCTGCCAAGA 61.463 50.000 29.34 16.15 46.41 3.02
1959 6028 1.005867 AATTGGTTGCGCTGCCAAG 60.006 52.632 29.34 0.00 46.41 3.61
1961 6030 2.650196 GAATTGGTTGCGCTGCCA 59.350 55.556 17.23 17.23 0.00 4.92
1962 6031 2.125952 GGAATTGGTTGCGCTGCC 60.126 61.111 9.73 11.58 0.00 4.85
1963 6032 1.444895 CAGGAATTGGTTGCGCTGC 60.445 57.895 9.73 0.25 0.00 5.25
1964 6033 1.444895 GCAGGAATTGGTTGCGCTG 60.445 57.895 9.73 0.00 0.00 5.18
1965 6034 1.870055 CTGCAGGAATTGGTTGCGCT 61.870 55.000 9.73 0.00 40.62 5.92
1966 6035 1.444895 CTGCAGGAATTGGTTGCGC 60.445 57.895 5.57 0.00 40.62 6.09
1967 6036 1.444895 GCTGCAGGAATTGGTTGCG 60.445 57.895 17.12 0.00 40.62 4.85
1968 6037 0.033781 TTGCTGCAGGAATTGGTTGC 59.966 50.000 17.55 0.00 38.30 4.17
1969 6038 2.343101 CATTGCTGCAGGAATTGGTTG 58.657 47.619 28.57 16.25 33.70 3.77
1970 6039 2.754946 CATTGCTGCAGGAATTGGTT 57.245 45.000 28.57 7.96 33.70 3.67
1982 6051 7.309177 AGTAGACGATACTATAAGCATTGCTG 58.691 38.462 12.82 1.81 39.62 4.41
1983 6052 7.455641 AGTAGACGATACTATAAGCATTGCT 57.544 36.000 5.03 5.03 42.56 3.91
1984 6053 7.273815 GGAAGTAGACGATACTATAAGCATTGC 59.726 40.741 0.00 0.00 0.00 3.56
1985 6054 8.516234 AGGAAGTAGACGATACTATAAGCATTG 58.484 37.037 5.68 0.00 0.00 2.82
1986 6055 8.638629 AGGAAGTAGACGATACTATAAGCATT 57.361 34.615 5.68 0.00 0.00 3.56
1987 6056 7.337436 GGAGGAAGTAGACGATACTATAAGCAT 59.663 40.741 5.68 0.00 0.00 3.79
1988 6057 6.654161 GGAGGAAGTAGACGATACTATAAGCA 59.346 42.308 5.68 0.00 0.00 3.91
1989 6058 6.183360 CGGAGGAAGTAGACGATACTATAAGC 60.183 46.154 5.68 0.00 0.00 3.09
1990 6059 7.095910 TCGGAGGAAGTAGACGATACTATAAG 58.904 42.308 5.68 0.00 0.00 1.73
1991 6060 6.997655 TCGGAGGAAGTAGACGATACTATAA 58.002 40.000 5.68 0.00 0.00 0.98
1992 6061 6.596309 TCGGAGGAAGTAGACGATACTATA 57.404 41.667 5.68 0.00 0.00 1.31
1993 6062 5.480642 TCGGAGGAAGTAGACGATACTAT 57.519 43.478 5.68 0.00 0.00 2.12
1994 6063 4.944619 TCGGAGGAAGTAGACGATACTA 57.055 45.455 5.68 0.00 0.00 1.82
1995 6064 3.834489 TCGGAGGAAGTAGACGATACT 57.166 47.619 0.00 0.00 0.00 2.12
1996 6065 4.083377 GGAATCGGAGGAAGTAGACGATAC 60.083 50.000 0.00 0.00 42.69 2.24
1997 6066 4.070716 GGAATCGGAGGAAGTAGACGATA 58.929 47.826 0.00 0.00 42.69 2.92
1998 6067 2.885894 GGAATCGGAGGAAGTAGACGAT 59.114 50.000 0.00 0.00 45.06 3.73
1999 6068 2.092538 AGGAATCGGAGGAAGTAGACGA 60.093 50.000 0.00 0.00 38.00 4.20
2000 6069 2.299521 AGGAATCGGAGGAAGTAGACG 58.700 52.381 0.00 0.00 0.00 4.18
2001 6070 5.848833 TTTAGGAATCGGAGGAAGTAGAC 57.151 43.478 0.00 0.00 0.00 2.59
2002 6071 8.722622 AATATTTAGGAATCGGAGGAAGTAGA 57.277 34.615 0.00 0.00 0.00 2.59
2004 6073 9.597681 ACTAATATTTAGGAATCGGAGGAAGTA 57.402 33.333 0.00 0.00 0.00 2.24
2005 6074 8.493787 ACTAATATTTAGGAATCGGAGGAAGT 57.506 34.615 0.00 0.00 0.00 3.01
2006 6075 8.585881 TGACTAATATTTAGGAATCGGAGGAAG 58.414 37.037 0.00 0.00 0.00 3.46
2007 6076 8.486942 TGACTAATATTTAGGAATCGGAGGAA 57.513 34.615 0.00 0.00 0.00 3.36
2008 6077 8.666129 ATGACTAATATTTAGGAATCGGAGGA 57.334 34.615 0.00 0.00 0.00 3.71
2009 6078 9.726438 AAATGACTAATATTTAGGAATCGGAGG 57.274 33.333 0.00 0.00 0.00 4.30
2125 6194 9.495382 AGTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
2137 6206 8.881262 TCTTTAGAAATTAGTCCCTCTGTTTCT 58.119 33.333 0.00 0.00 41.14 2.52
2138 6207 9.674068 ATCTTTAGAAATTAGTCCCTCTGTTTC 57.326 33.333 0.00 0.00 34.91 2.78
2139 6208 9.674068 GATCTTTAGAAATTAGTCCCTCTGTTT 57.326 33.333 0.00 0.00 0.00 2.83
2140 6209 8.268605 GGATCTTTAGAAATTAGTCCCTCTGTT 58.731 37.037 0.00 0.00 0.00 3.16
2141 6210 7.403231 TGGATCTTTAGAAATTAGTCCCTCTGT 59.597 37.037 0.00 0.00 0.00 3.41
2142 6211 7.796054 TGGATCTTTAGAAATTAGTCCCTCTG 58.204 38.462 0.00 0.00 0.00 3.35
2143 6212 7.996758 TGGATCTTTAGAAATTAGTCCCTCT 57.003 36.000 0.00 0.00 0.00 3.69
2144 6213 9.713713 GTATGGATCTTTAGAAATTAGTCCCTC 57.286 37.037 0.00 0.00 0.00 4.30
2145 6214 9.225682 TGTATGGATCTTTAGAAATTAGTCCCT 57.774 33.333 0.00 0.00 0.00 4.20
2146 6215 9.847224 TTGTATGGATCTTTAGAAATTAGTCCC 57.153 33.333 0.00 0.00 0.00 4.46
2169 6238 9.965824 CTGGTTCAGTTGTATAAATTTCTTTGT 57.034 29.630 0.00 0.00 0.00 2.83
2170 6239 9.965824 ACTGGTTCAGTTGTATAAATTTCTTTG 57.034 29.630 0.00 0.00 42.59 2.77
2171 6240 9.965824 CACTGGTTCAGTTGTATAAATTTCTTT 57.034 29.630 0.00 0.00 42.59 2.52
2172 6241 8.082242 GCACTGGTTCAGTTGTATAAATTTCTT 58.918 33.333 0.00 0.00 42.59 2.52
2173 6242 7.230510 TGCACTGGTTCAGTTGTATAAATTTCT 59.769 33.333 0.00 0.00 42.59 2.52
2174 6243 7.326063 GTGCACTGGTTCAGTTGTATAAATTTC 59.674 37.037 10.32 0.00 42.59 2.17
2175 6244 7.145323 GTGCACTGGTTCAGTTGTATAAATTT 58.855 34.615 10.32 0.00 42.59 1.82
2176 6245 6.294508 GGTGCACTGGTTCAGTTGTATAAATT 60.295 38.462 17.98 0.00 42.59 1.82
2177 6246 5.183140 GGTGCACTGGTTCAGTTGTATAAAT 59.817 40.000 17.98 0.00 42.59 1.40
2178 6247 4.517453 GGTGCACTGGTTCAGTTGTATAAA 59.483 41.667 17.98 0.00 42.59 1.40
2179 6248 4.069304 GGTGCACTGGTTCAGTTGTATAA 58.931 43.478 17.98 0.00 42.59 0.98
2180 6249 3.071747 TGGTGCACTGGTTCAGTTGTATA 59.928 43.478 17.98 0.00 42.59 1.47
2181 6250 2.158682 TGGTGCACTGGTTCAGTTGTAT 60.159 45.455 17.98 0.00 42.59 2.29
2182 6251 1.210722 TGGTGCACTGGTTCAGTTGTA 59.789 47.619 17.98 0.00 42.59 2.41
2183 6252 0.034574 TGGTGCACTGGTTCAGTTGT 60.035 50.000 17.98 0.00 42.59 3.32
2184 6253 1.066002 CTTGGTGCACTGGTTCAGTTG 59.934 52.381 17.98 0.00 42.59 3.16
2185 6254 1.392589 CTTGGTGCACTGGTTCAGTT 58.607 50.000 17.98 0.00 42.59 3.16
2186 6255 0.466189 CCTTGGTGCACTGGTTCAGT 60.466 55.000 17.98 0.00 46.51 3.41
2187 6256 1.799258 GCCTTGGTGCACTGGTTCAG 61.799 60.000 17.98 3.92 37.52 3.02
2188 6257 1.827789 GCCTTGGTGCACTGGTTCA 60.828 57.895 17.98 2.31 0.00 3.18
2189 6258 1.391157 TTGCCTTGGTGCACTGGTTC 61.391 55.000 17.98 0.00 41.88 3.62
2190 6259 0.760189 ATTGCCTTGGTGCACTGGTT 60.760 50.000 17.98 4.16 41.88 3.67
2191 6260 0.112218 TATTGCCTTGGTGCACTGGT 59.888 50.000 17.98 4.23 41.88 4.00
2192 6261 1.477553 ATATTGCCTTGGTGCACTGG 58.522 50.000 17.98 16.79 41.88 4.00
2193 6262 4.717233 TTAATATTGCCTTGGTGCACTG 57.283 40.909 17.98 7.39 41.88 3.66
2194 6263 5.736951 TTTTAATATTGCCTTGGTGCACT 57.263 34.783 17.98 0.00 41.88 4.40
2216 6285 6.796705 ACGAAAGGTTCATCGAGTAAATTT 57.203 33.333 1.84 0.00 41.43 1.82
2217 6286 6.035758 GCTACGAAAGGTTCATCGAGTAAATT 59.964 38.462 1.84 0.00 41.43 1.82
2218 6287 5.519206 GCTACGAAAGGTTCATCGAGTAAAT 59.481 40.000 1.84 0.00 41.43 1.40
2238 6307 9.903185 GAATCTAAAAGTTATTCGTCTTGCTAC 57.097 33.333 0.00 0.00 0.00 3.58
2259 6328 9.965824 ACTTTTACAAATTTGTTCATCGAATCT 57.034 25.926 27.66 2.17 42.35 2.40
2264 6333 8.728088 AGCTACTTTTACAAATTTGTTCATCG 57.272 30.769 27.66 15.03 42.35 3.84
2291 6361 6.752168 ACTTGACTGCAAATTAGCTCATTTT 58.248 32.000 3.06 0.00 32.73 1.82
2299 6369 9.683069 ATTTTGTCTTACTTGACTGCAAATTAG 57.317 29.630 0.00 0.00 37.79 1.73
2306 6376 7.746475 GTCACATATTTTGTCTTACTTGACTGC 59.254 37.037 0.00 0.00 36.00 4.40
2307 6377 8.773645 TGTCACATATTTTGTCTTACTTGACTG 58.226 33.333 0.00 0.00 36.00 3.51
2350 6420 1.133976 GTGGAGCCTACCAATCAGCAT 60.134 52.381 0.00 0.00 41.87 3.79
2355 6425 2.396590 TTTCGTGGAGCCTACCAATC 57.603 50.000 0.00 0.00 41.87 2.67
2359 6429 3.470645 ACATATTTCGTGGAGCCTACC 57.529 47.619 0.00 0.00 0.00 3.18
2437 6508 9.410556 GAGTGAACAAACATACTAAAATGCATT 57.589 29.630 5.99 5.99 0.00 3.56
2439 6510 7.935520 TGAGTGAACAAACATACTAAAATGCA 58.064 30.769 0.00 0.00 0.00 3.96
2496 6567 7.148154 CCCCTCATTATTACACGATGTTTTGAA 60.148 37.037 0.00 0.00 0.00 2.69
2507 6578 5.632034 ACTTCCTCCCCTCATTATTACAC 57.368 43.478 0.00 0.00 0.00 2.90
2511 6582 5.369993 GGAACTACTTCCTCCCCTCATTATT 59.630 44.000 0.00 0.00 42.72 1.40
2528 6599 8.185505 CAGATCAACTAGTAGACAAGGAACTAC 58.814 40.741 3.59 0.00 38.49 2.73
2535 6606 5.031578 GCGTCAGATCAACTAGTAGACAAG 58.968 45.833 3.59 0.00 0.00 3.16
2569 6640 8.409358 AGAGTTTAGGAAATTATGCAGTTTGT 57.591 30.769 0.00 0.00 0.00 2.83
2576 6647 7.816640 TGTTGTGAGAGTTTAGGAAATTATGC 58.183 34.615 0.00 0.00 0.00 3.14
2594 6665 5.703592 AGAACAGTTGTAGTGTTTGTTGTGA 59.296 36.000 0.00 0.00 41.47 3.58
2612 6683 2.245159 TCCACACTTGAGCAGAACAG 57.755 50.000 0.00 0.00 0.00 3.16
2620 6691 4.654091 AAATGTTGGTTCCACACTTGAG 57.346 40.909 0.00 0.00 0.00 3.02
2624 6695 4.895297 AGATGAAAATGTTGGTTCCACACT 59.105 37.500 0.00 0.00 0.00 3.55
2628 6699 5.867903 ACAAGATGAAAATGTTGGTTCCA 57.132 34.783 1.38 0.00 0.00 3.53
2629 6700 7.279758 TCAAAACAAGATGAAAATGTTGGTTCC 59.720 33.333 0.08 0.00 34.23 3.62
2638 6709 7.069826 TGGAGAACCTCAAAACAAGATGAAAAT 59.930 33.333 0.00 0.00 37.04 1.82
2639 6710 6.379703 TGGAGAACCTCAAAACAAGATGAAAA 59.620 34.615 0.00 0.00 37.04 2.29
2640 6711 5.890985 TGGAGAACCTCAAAACAAGATGAAA 59.109 36.000 0.00 0.00 37.04 2.69
2651 6722 7.563556 AGGTTTCTAAAAATGGAGAACCTCAAA 59.436 33.333 0.00 0.00 32.45 2.69
2664 6735 9.952030 TTTGTTTCTGGAAAGGTTTCTAAAAAT 57.048 25.926 2.60 0.00 37.35 1.82
2666 6737 8.038351 CCTTTGTTTCTGGAAAGGTTTCTAAAA 58.962 33.333 0.00 0.00 42.27 1.52
2683 6754 6.593770 ACAAATTTCAGGTGAACCTTTGTTTC 59.406 34.615 18.30 0.00 46.09 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.