Multiple sequence alignment - TraesCS1A01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G423600 chr1A 100.000 2336 0 0 1 2336 578836402 578834067 0.000000e+00 4314
1 TraesCS1A01G423600 chr1A 90.385 104 9 1 1883 1985 478423680 478423783 4.050000e-28 135
2 TraesCS1A01G423600 chr1A 89.623 106 10 1 1881 1985 2826000 2826105 1.460000e-27 134
3 TraesCS1A01G423600 chr1A 89.524 105 10 1 1882 1985 2839830 2839934 5.240000e-27 132
4 TraesCS1A01G423600 chr1D 88.312 1232 98 22 505 1703 482109935 482108717 0.000000e+00 1435
5 TraesCS1A01G423600 chr1D 79.051 253 20 15 2011 2263 482106934 482106715 2.420000e-30 143
6 TraesCS1A01G423600 chr1D 90.566 106 10 0 1882 1987 365430515 365430410 8.700000e-30 141
7 TraesCS1A01G423600 chr1B 86.744 860 72 20 1443 2284 670675048 670674213 0.000000e+00 918
8 TraesCS1A01G423600 chr1B 85.926 675 57 15 686 1336 670675802 670675142 0.000000e+00 686
9 TraesCS1A01G423600 chr1B 78.966 561 81 19 808 1348 670673920 670673377 4.780000e-92 348
10 TraesCS1A01G423600 chr6B 87.931 116 11 3 1871 1985 717139029 717139142 1.460000e-27 134
11 TraesCS1A01G423600 chr7D 89.623 106 8 3 1882 1985 5318956 5318852 5.240000e-27 132
12 TraesCS1A01G423600 chr7D 88.889 108 10 2 1882 1987 459077909 459077802 5.240000e-27 132
13 TraesCS1A01G423600 chr6D 89.524 105 10 1 1882 1985 472426129 472426233 5.240000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G423600 chr1A 578834067 578836402 2335 True 4314.000000 4314 100.000000 1 2336 1 chr1A.!!$R1 2335
1 TraesCS1A01G423600 chr1D 482106715 482109935 3220 True 789.000000 1435 83.681500 505 2263 2 chr1D.!!$R2 1758
2 TraesCS1A01G423600 chr1B 670673377 670675802 2425 True 650.666667 918 83.878667 686 2284 3 chr1B.!!$R1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.03254 CCTTGCAGTTGCTTTGGGAC 59.967 55.0 5.62 0.0 42.66 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1612 0.029167 TGTGCATGTGTTTGTGAGCG 59.971 50.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.897621 CAAAGAAGCCCATTCCCACC 59.102 55.000 0.00 0.00 38.84 4.61
20 21 0.786435 AAAGAAGCCCATTCCCACCT 59.214 50.000 0.00 0.00 38.84 4.00
21 22 0.332972 AAGAAGCCCATTCCCACCTC 59.667 55.000 0.00 0.00 38.84 3.85
22 23 0.846427 AGAAGCCCATTCCCACCTCA 60.846 55.000 0.00 0.00 38.84 3.86
23 24 0.259938 GAAGCCCATTCCCACCTCAT 59.740 55.000 0.00 0.00 31.14 2.90
24 25 0.032813 AAGCCCATTCCCACCTCATG 60.033 55.000 0.00 0.00 0.00 3.07
35 36 1.747355 CCACCTCATGGTTGAAGATGC 59.253 52.381 0.00 0.00 46.05 3.91
36 37 1.747355 CACCTCATGGTTGAAGATGCC 59.253 52.381 0.00 0.00 46.05 4.40
37 38 1.355381 ACCTCATGGTTGAAGATGCCA 59.645 47.619 0.00 0.00 46.05 4.92
38 39 2.024655 ACCTCATGGTTGAAGATGCCAT 60.025 45.455 0.00 0.00 46.05 4.40
39 40 3.028850 CCTCATGGTTGAAGATGCCATT 58.971 45.455 0.00 0.00 40.68 3.16
40 41 3.181479 CCTCATGGTTGAAGATGCCATTG 60.181 47.826 0.00 0.00 40.68 2.82
41 42 2.166870 TCATGGTTGAAGATGCCATTGC 59.833 45.455 0.00 0.00 40.68 3.56
42 43 0.896923 TGGTTGAAGATGCCATTGCC 59.103 50.000 0.00 0.00 36.33 4.52
43 44 0.176449 GGTTGAAGATGCCATTGCCC 59.824 55.000 0.00 0.00 36.33 5.36
44 45 0.179129 GTTGAAGATGCCATTGCCCG 60.179 55.000 0.00 0.00 36.33 6.13
45 46 1.947597 TTGAAGATGCCATTGCCCGC 61.948 55.000 0.00 0.00 36.33 6.13
46 47 2.362760 AAGATGCCATTGCCCGCA 60.363 55.556 0.00 0.00 39.79 5.69
47 48 1.947597 GAAGATGCCATTGCCCGCAA 61.948 55.000 4.31 4.31 38.75 4.85
48 49 1.332144 AAGATGCCATTGCCCGCAAT 61.332 50.000 9.10 9.10 46.35 3.56
55 56 2.657297 ATTGCCCGCAATGTTGACT 58.343 47.368 13.92 0.00 44.05 3.41
56 57 0.244450 ATTGCCCGCAATGTTGACTG 59.756 50.000 13.92 0.00 44.05 3.51
57 58 2.126346 GCCCGCAATGTTGACTGC 60.126 61.111 0.00 0.00 35.14 4.40
58 59 2.918345 GCCCGCAATGTTGACTGCA 61.918 57.895 0.00 0.00 38.52 4.41
59 60 1.885157 CCCGCAATGTTGACTGCAT 59.115 52.632 0.00 0.00 38.52 3.96
60 61 0.179156 CCCGCAATGTTGACTGCATC 60.179 55.000 0.00 0.00 38.52 3.91
61 62 0.806868 CCGCAATGTTGACTGCATCT 59.193 50.000 0.00 0.00 38.52 2.90
62 63 1.466866 CCGCAATGTTGACTGCATCTG 60.467 52.381 0.00 0.00 38.52 2.90
63 64 1.466866 CGCAATGTTGACTGCATCTGG 60.467 52.381 0.00 0.00 38.52 3.86
64 65 1.542915 GCAATGTTGACTGCATCTGGT 59.457 47.619 0.00 0.00 38.48 4.00
65 66 2.415090 GCAATGTTGACTGCATCTGGTC 60.415 50.000 0.00 0.00 38.48 4.02
66 67 2.119801 ATGTTGACTGCATCTGGTCC 57.880 50.000 1.77 0.00 0.00 4.46
67 68 1.059098 TGTTGACTGCATCTGGTCCT 58.941 50.000 1.77 0.00 0.00 3.85
68 69 1.271001 TGTTGACTGCATCTGGTCCTG 60.271 52.381 1.77 0.00 0.00 3.86
69 70 1.002430 GTTGACTGCATCTGGTCCTGA 59.998 52.381 0.28 0.28 0.00 3.86
70 71 1.351076 TGACTGCATCTGGTCCTGAA 58.649 50.000 2.14 0.00 0.00 3.02
71 72 1.699083 TGACTGCATCTGGTCCTGAAA 59.301 47.619 2.14 0.00 0.00 2.69
72 73 2.106338 TGACTGCATCTGGTCCTGAAAA 59.894 45.455 2.14 0.00 0.00 2.29
73 74 2.746362 GACTGCATCTGGTCCTGAAAAG 59.254 50.000 2.14 3.86 0.00 2.27
74 75 2.107204 ACTGCATCTGGTCCTGAAAAGT 59.893 45.455 2.14 4.43 0.00 2.66
75 76 3.152341 CTGCATCTGGTCCTGAAAAGTT 58.848 45.455 2.14 0.00 0.00 2.66
76 77 3.565307 TGCATCTGGTCCTGAAAAGTTT 58.435 40.909 2.14 0.00 0.00 2.66
77 78 3.569701 TGCATCTGGTCCTGAAAAGTTTC 59.430 43.478 2.14 0.00 37.69 2.78
78 79 3.057245 GCATCTGGTCCTGAAAAGTTTCC 60.057 47.826 2.14 0.00 36.36 3.13
79 80 2.846193 TCTGGTCCTGAAAAGTTTCCG 58.154 47.619 0.00 0.00 36.36 4.30
80 81 2.171870 TCTGGTCCTGAAAAGTTTCCGT 59.828 45.455 0.00 0.00 36.36 4.69
81 82 3.388676 TCTGGTCCTGAAAAGTTTCCGTA 59.611 43.478 0.00 0.00 36.36 4.02
82 83 4.131596 CTGGTCCTGAAAAGTTTCCGTAA 58.868 43.478 1.46 0.00 36.36 3.18
83 84 4.131596 TGGTCCTGAAAAGTTTCCGTAAG 58.868 43.478 1.46 0.00 36.36 2.34
84 85 4.141665 TGGTCCTGAAAAGTTTCCGTAAGA 60.142 41.667 1.46 0.00 36.36 2.10
85 86 4.451435 GGTCCTGAAAAGTTTCCGTAAGAG 59.549 45.833 1.46 0.00 36.36 2.85
86 87 5.055144 GTCCTGAAAAGTTTCCGTAAGAGT 58.945 41.667 1.46 0.00 36.36 3.24
87 88 5.050295 GTCCTGAAAAGTTTCCGTAAGAGTG 60.050 44.000 1.46 0.00 36.36 3.51
88 89 5.054477 CCTGAAAAGTTTCCGTAAGAGTGA 58.946 41.667 1.46 0.00 36.36 3.41
89 90 5.526111 CCTGAAAAGTTTCCGTAAGAGTGAA 59.474 40.000 1.46 0.00 36.36 3.18
90 91 6.292919 CCTGAAAAGTTTCCGTAAGAGTGAAG 60.293 42.308 1.46 0.00 36.36 3.02
91 92 5.526111 TGAAAAGTTTCCGTAAGAGTGAAGG 59.474 40.000 1.46 0.00 36.36 3.46
92 93 4.684484 AAGTTTCCGTAAGAGTGAAGGT 57.316 40.909 0.00 0.00 43.02 3.50
93 94 4.684484 AGTTTCCGTAAGAGTGAAGGTT 57.316 40.909 0.00 0.00 43.02 3.50
94 95 5.032327 AGTTTCCGTAAGAGTGAAGGTTT 57.968 39.130 0.00 0.00 43.02 3.27
95 96 5.434408 AGTTTCCGTAAGAGTGAAGGTTTT 58.566 37.500 0.00 0.00 43.02 2.43
96 97 5.526479 AGTTTCCGTAAGAGTGAAGGTTTTC 59.474 40.000 0.00 0.00 43.02 2.29
97 98 4.675976 TCCGTAAGAGTGAAGGTTTTCA 57.324 40.909 0.00 0.00 39.64 2.69
107 108 4.164843 TGAAGGTTTTCACTTGGCTACT 57.835 40.909 0.00 0.00 38.37 2.57
108 109 4.134563 TGAAGGTTTTCACTTGGCTACTC 58.865 43.478 0.00 0.00 38.37 2.59
109 110 4.141482 TGAAGGTTTTCACTTGGCTACTCT 60.141 41.667 0.00 0.00 38.37 3.24
110 111 5.071250 TGAAGGTTTTCACTTGGCTACTCTA 59.929 40.000 0.00 0.00 38.37 2.43
111 112 5.763876 AGGTTTTCACTTGGCTACTCTAT 57.236 39.130 0.00 0.00 0.00 1.98
112 113 5.491982 AGGTTTTCACTTGGCTACTCTATG 58.508 41.667 0.00 0.00 0.00 2.23
113 114 5.248477 AGGTTTTCACTTGGCTACTCTATGA 59.752 40.000 0.00 0.00 0.00 2.15
114 115 6.069963 AGGTTTTCACTTGGCTACTCTATGAT 60.070 38.462 0.00 0.00 0.00 2.45
115 116 6.037610 GGTTTTCACTTGGCTACTCTATGATG 59.962 42.308 0.00 0.00 0.00 3.07
116 117 6.544928 TTTCACTTGGCTACTCTATGATGA 57.455 37.500 0.00 0.00 0.00 2.92
117 118 5.521906 TCACTTGGCTACTCTATGATGAC 57.478 43.478 0.00 0.00 0.00 3.06
118 119 4.956075 TCACTTGGCTACTCTATGATGACA 59.044 41.667 0.00 0.00 0.00 3.58
119 120 5.422012 TCACTTGGCTACTCTATGATGACAA 59.578 40.000 0.00 0.00 0.00 3.18
120 121 5.752472 CACTTGGCTACTCTATGATGACAAG 59.248 44.000 5.46 5.46 38.85 3.16
121 122 4.327982 TGGCTACTCTATGATGACAAGC 57.672 45.455 0.00 0.00 0.00 4.01
122 123 3.963374 TGGCTACTCTATGATGACAAGCT 59.037 43.478 0.00 0.00 0.00 3.74
123 124 4.038522 TGGCTACTCTATGATGACAAGCTC 59.961 45.833 0.00 0.00 0.00 4.09
124 125 4.225984 GCTACTCTATGATGACAAGCTCG 58.774 47.826 0.00 0.00 0.00 5.03
125 126 3.724508 ACTCTATGATGACAAGCTCGG 57.275 47.619 0.00 0.00 0.00 4.63
126 127 2.223923 ACTCTATGATGACAAGCTCGGC 60.224 50.000 0.00 0.00 0.00 5.54
127 128 1.756538 TCTATGATGACAAGCTCGGCA 59.243 47.619 0.00 0.00 0.00 5.69
128 129 1.863454 CTATGATGACAAGCTCGGCAC 59.137 52.381 0.00 0.00 0.00 5.01
129 130 0.745845 ATGATGACAAGCTCGGCACC 60.746 55.000 0.00 0.00 0.00 5.01
130 131 1.375908 GATGACAAGCTCGGCACCA 60.376 57.895 0.00 0.00 0.00 4.17
131 132 0.955428 GATGACAAGCTCGGCACCAA 60.955 55.000 0.00 0.00 0.00 3.67
132 133 0.957395 ATGACAAGCTCGGCACCAAG 60.957 55.000 0.00 0.00 0.00 3.61
133 134 2.281761 ACAAGCTCGGCACCAAGG 60.282 61.111 0.00 0.00 0.00 3.61
134 135 3.741476 CAAGCTCGGCACCAAGGC 61.741 66.667 0.00 0.00 39.93 4.35
135 136 4.269523 AAGCTCGGCACCAAGGCA 62.270 61.111 0.00 0.00 44.47 4.75
136 137 3.790416 AAGCTCGGCACCAAGGCAA 62.790 57.895 0.00 0.00 44.47 4.52
137 138 3.294493 GCTCGGCACCAAGGCAAA 61.294 61.111 0.00 0.00 44.47 3.68
138 139 2.639327 GCTCGGCACCAAGGCAAAT 61.639 57.895 0.00 0.00 44.47 2.32
139 140 1.312371 GCTCGGCACCAAGGCAAATA 61.312 55.000 0.00 0.00 44.47 1.40
140 141 1.392589 CTCGGCACCAAGGCAAATAT 58.607 50.000 0.00 0.00 44.47 1.28
141 142 1.750778 CTCGGCACCAAGGCAAATATT 59.249 47.619 0.00 0.00 44.47 1.28
142 143 1.748493 TCGGCACCAAGGCAAATATTC 59.252 47.619 0.00 0.00 44.47 1.75
143 144 1.750778 CGGCACCAAGGCAAATATTCT 59.249 47.619 0.00 0.00 44.47 2.40
144 145 2.223572 CGGCACCAAGGCAAATATTCTC 60.224 50.000 0.00 0.00 44.47 2.87
145 146 2.101415 GGCACCAAGGCAAATATTCTCC 59.899 50.000 0.00 0.00 43.51 3.71
146 147 2.760092 GCACCAAGGCAAATATTCTCCA 59.240 45.455 8.20 0.00 0.00 3.86
147 148 3.195396 GCACCAAGGCAAATATTCTCCAA 59.805 43.478 8.20 0.00 0.00 3.53
148 149 4.322650 GCACCAAGGCAAATATTCTCCAAA 60.323 41.667 8.20 0.00 0.00 3.28
149 150 5.792741 CACCAAGGCAAATATTCTCCAAAA 58.207 37.500 8.20 0.00 0.00 2.44
150 151 5.870978 CACCAAGGCAAATATTCTCCAAAAG 59.129 40.000 8.20 0.00 0.00 2.27
151 152 4.872124 CCAAGGCAAATATTCTCCAAAAGC 59.128 41.667 8.20 0.00 0.00 3.51
152 153 5.481105 CAAGGCAAATATTCTCCAAAAGCA 58.519 37.500 8.20 0.00 0.00 3.91
153 154 5.077134 AGGCAAATATTCTCCAAAAGCAC 57.923 39.130 8.20 0.00 0.00 4.40
154 155 4.527816 AGGCAAATATTCTCCAAAAGCACA 59.472 37.500 8.20 0.00 0.00 4.57
155 156 5.188359 AGGCAAATATTCTCCAAAAGCACAT 59.812 36.000 8.20 0.00 0.00 3.21
156 157 5.292589 GGCAAATATTCTCCAAAAGCACATG 59.707 40.000 0.00 0.00 0.00 3.21
157 158 5.292589 GCAAATATTCTCCAAAAGCACATGG 59.707 40.000 0.00 0.00 38.09 3.66
158 159 5.603170 AATATTCTCCAAAAGCACATGGG 57.397 39.130 0.00 0.00 37.31 4.00
159 160 0.968405 TTCTCCAAAAGCACATGGGC 59.032 50.000 13.49 13.49 37.31 5.36
160 161 0.899717 TCTCCAAAAGCACATGGGCC 60.900 55.000 18.42 0.00 37.31 5.80
161 162 1.152376 TCCAAAAGCACATGGGCCA 60.152 52.632 18.42 9.61 37.31 5.36
162 163 0.762082 TCCAAAAGCACATGGGCCAA 60.762 50.000 18.42 0.00 37.31 4.52
163 164 0.108207 CCAAAAGCACATGGGCCAAA 59.892 50.000 18.42 0.00 32.87 3.28
164 165 1.476471 CCAAAAGCACATGGGCCAAAA 60.476 47.619 18.42 0.00 32.87 2.44
165 166 2.295885 CAAAAGCACATGGGCCAAAAA 58.704 42.857 18.42 0.00 0.00 1.94
180 181 3.034924 AAAAAGCTCATGCCCGACA 57.965 47.368 0.00 0.00 40.80 4.35
181 182 1.549203 AAAAAGCTCATGCCCGACAT 58.451 45.000 0.00 0.00 40.66 3.06
188 189 3.814268 ATGCCCGACATGCAACGC 61.814 61.111 0.00 0.00 42.92 4.84
190 191 4.166011 GCCCGACATGCAACGCTC 62.166 66.667 0.00 0.00 0.00 5.03
191 192 3.499737 CCCGACATGCAACGCTCC 61.500 66.667 0.00 0.00 0.00 4.70
192 193 2.741985 CCGACATGCAACGCTCCA 60.742 61.111 0.00 0.00 0.00 3.86
193 194 2.743752 CCGACATGCAACGCTCCAG 61.744 63.158 0.00 0.00 0.00 3.86
194 195 2.029288 CGACATGCAACGCTCCAGT 61.029 57.895 0.00 0.00 0.00 4.00
195 196 1.568612 CGACATGCAACGCTCCAGTT 61.569 55.000 0.00 0.00 34.15 3.16
202 203 2.900528 AACGCTCCAGTTGAAGACG 58.099 52.632 0.00 0.00 32.39 4.18
203 204 0.387929 AACGCTCCAGTTGAAGACGA 59.612 50.000 0.00 0.00 32.39 4.20
204 205 0.387929 ACGCTCCAGTTGAAGACGAA 59.612 50.000 0.00 0.00 0.00 3.85
205 206 1.202486 ACGCTCCAGTTGAAGACGAAA 60.202 47.619 0.00 0.00 0.00 3.46
206 207 2.069273 CGCTCCAGTTGAAGACGAAAT 58.931 47.619 0.00 0.00 0.00 2.17
207 208 2.159787 CGCTCCAGTTGAAGACGAAATG 60.160 50.000 0.00 0.00 0.00 2.32
208 209 2.413371 GCTCCAGTTGAAGACGAAATGC 60.413 50.000 0.00 0.00 0.00 3.56
209 210 2.807967 CTCCAGTTGAAGACGAAATGCA 59.192 45.455 0.00 0.00 0.00 3.96
210 211 2.548057 TCCAGTTGAAGACGAAATGCAC 59.452 45.455 0.00 0.00 0.00 4.57
211 212 2.549754 CCAGTTGAAGACGAAATGCACT 59.450 45.455 0.00 0.00 0.00 4.40
212 213 3.003689 CCAGTTGAAGACGAAATGCACTT 59.996 43.478 0.00 0.00 0.00 3.16
213 214 4.213270 CCAGTTGAAGACGAAATGCACTTA 59.787 41.667 0.00 0.00 0.00 2.24
214 215 5.106555 CCAGTTGAAGACGAAATGCACTTAT 60.107 40.000 0.00 0.00 0.00 1.73
215 216 6.373779 CAGTTGAAGACGAAATGCACTTATT 58.626 36.000 0.00 0.00 0.00 1.40
216 217 6.521133 CAGTTGAAGACGAAATGCACTTATTC 59.479 38.462 0.00 0.00 0.00 1.75
217 218 6.204688 AGTTGAAGACGAAATGCACTTATTCA 59.795 34.615 0.00 0.00 0.00 2.57
218 219 6.741992 TGAAGACGAAATGCACTTATTCAT 57.258 33.333 0.00 0.00 0.00 2.57
219 220 6.775088 TGAAGACGAAATGCACTTATTCATC 58.225 36.000 0.00 0.00 0.00 2.92
220 221 6.371271 TGAAGACGAAATGCACTTATTCATCA 59.629 34.615 0.00 0.00 0.00 3.07
221 222 6.932356 AGACGAAATGCACTTATTCATCAT 57.068 33.333 0.00 0.00 0.00 2.45
222 223 7.325660 AGACGAAATGCACTTATTCATCATT 57.674 32.000 0.00 0.00 0.00 2.57
223 224 7.765307 AGACGAAATGCACTTATTCATCATTT 58.235 30.769 0.00 0.00 39.28 2.32
224 225 8.246180 AGACGAAATGCACTTATTCATCATTTT 58.754 29.630 0.00 0.00 37.45 1.82
225 226 8.176814 ACGAAATGCACTTATTCATCATTTTG 57.823 30.769 10.15 10.15 41.12 2.44
226 227 7.114920 CGAAATGCACTTATTCATCATTTTGC 58.885 34.615 0.00 0.00 37.45 3.68
227 228 6.913873 AATGCACTTATTCATCATTTTGCC 57.086 33.333 0.00 0.00 0.00 4.52
228 229 5.402997 TGCACTTATTCATCATTTTGCCA 57.597 34.783 0.00 0.00 0.00 4.92
229 230 5.979993 TGCACTTATTCATCATTTTGCCAT 58.020 33.333 0.00 0.00 0.00 4.40
230 231 6.408035 TGCACTTATTCATCATTTTGCCATT 58.592 32.000 0.00 0.00 0.00 3.16
231 232 6.314152 TGCACTTATTCATCATTTTGCCATTG 59.686 34.615 0.00 0.00 0.00 2.82
232 233 6.238266 GCACTTATTCATCATTTTGCCATTGG 60.238 38.462 0.00 0.00 0.00 3.16
233 234 6.819649 CACTTATTCATCATTTTGCCATTGGT 59.180 34.615 4.26 0.00 0.00 3.67
234 235 7.010738 CACTTATTCATCATTTTGCCATTGGTC 59.989 37.037 4.26 0.00 0.00 4.02
235 236 3.891422 TCATCATTTTGCCATTGGTCC 57.109 42.857 4.26 0.00 0.00 4.46
236 237 3.443052 TCATCATTTTGCCATTGGTCCT 58.557 40.909 4.26 0.00 0.00 3.85
237 238 3.839490 TCATCATTTTGCCATTGGTCCTT 59.161 39.130 4.26 0.00 0.00 3.36
238 239 3.681593 TCATTTTGCCATTGGTCCTTG 57.318 42.857 4.26 0.00 0.00 3.61
239 240 2.302445 TCATTTTGCCATTGGTCCTTGG 59.698 45.455 4.26 6.98 36.03 3.61
243 244 4.792066 CCATTGGTCCTTGGCCAT 57.208 55.556 6.09 0.00 37.08 4.40
244 245 2.995480 CCATTGGTCCTTGGCCATT 58.005 52.632 6.09 0.00 37.08 3.16
245 246 1.278537 CCATTGGTCCTTGGCCATTT 58.721 50.000 6.09 0.00 37.08 2.32
246 247 1.065998 CCATTGGTCCTTGGCCATTTG 60.066 52.381 6.09 0.00 37.08 2.32
247 248 1.065998 CATTGGTCCTTGGCCATTTGG 60.066 52.381 6.09 10.13 37.08 3.28
259 260 2.335316 CCATTTGGCAATGAATGGGG 57.665 50.000 17.87 2.72 45.45 4.96
260 261 1.838715 CCATTTGGCAATGAATGGGGA 59.161 47.619 17.87 0.00 45.45 4.81
261 262 2.440253 CCATTTGGCAATGAATGGGGAT 59.560 45.455 17.87 0.00 45.45 3.85
262 263 3.472652 CATTTGGCAATGAATGGGGATG 58.527 45.455 0.00 0.00 42.35 3.51
263 264 0.831966 TTGGCAATGAATGGGGATGC 59.168 50.000 0.00 0.00 36.31 3.91
265 266 2.830475 GCAATGAATGGGGATGCCT 58.170 52.632 2.19 0.00 0.00 4.75
266 267 0.677842 GCAATGAATGGGGATGCCTC 59.322 55.000 2.19 0.00 0.00 4.70
267 268 1.335145 CAATGAATGGGGATGCCTCC 58.665 55.000 2.19 0.00 41.26 4.30
268 269 1.133262 CAATGAATGGGGATGCCTCCT 60.133 52.381 8.03 0.00 41.74 3.69
269 270 0.776176 ATGAATGGGGATGCCTCCTC 59.224 55.000 8.03 4.26 43.10 3.71
270 271 1.355718 TGAATGGGGATGCCTCCTCC 61.356 60.000 5.33 6.98 41.97 4.30
271 272 1.006631 AATGGGGATGCCTCCTCCT 59.993 57.895 5.33 0.00 41.97 3.69
272 273 1.358830 AATGGGGATGCCTCCTCCTG 61.359 60.000 5.33 0.00 41.97 3.86
273 274 3.174265 GGGGATGCCTCCTCCTGG 61.174 72.222 8.03 0.00 41.74 4.45
279 280 2.690510 GCCTCCTCCTGGCTCCTT 60.691 66.667 0.00 0.00 46.38 3.36
280 281 3.041469 GCCTCCTCCTGGCTCCTTG 62.041 68.421 0.00 0.00 46.38 3.61
281 282 2.588989 CTCCTCCTGGCTCCTTGC 59.411 66.667 0.00 0.00 41.94 4.01
282 283 2.203983 TCCTCCTGGCTCCTTGCA 60.204 61.111 0.00 0.00 45.15 4.08
283 284 2.254737 CTCCTCCTGGCTCCTTGCAG 62.255 65.000 0.00 0.00 45.15 4.41
284 285 2.600729 CCTCCTGGCTCCTTGCAGT 61.601 63.158 0.00 0.00 45.15 4.40
285 286 1.377994 CTCCTGGCTCCTTGCAGTT 59.622 57.895 0.00 0.00 45.15 3.16
286 287 0.959372 CTCCTGGCTCCTTGCAGTTG 60.959 60.000 0.00 0.00 45.15 3.16
287 288 2.633509 CCTGGCTCCTTGCAGTTGC 61.634 63.158 0.00 0.00 45.15 4.17
288 289 1.602888 CTGGCTCCTTGCAGTTGCT 60.603 57.895 5.62 0.00 45.15 3.91
289 290 1.152694 TGGCTCCTTGCAGTTGCTT 60.153 52.632 5.62 0.00 45.15 3.91
290 291 0.756442 TGGCTCCTTGCAGTTGCTTT 60.756 50.000 5.62 0.00 45.15 3.51
291 292 0.319297 GGCTCCTTGCAGTTGCTTTG 60.319 55.000 5.62 0.00 45.15 2.77
292 293 0.319297 GCTCCTTGCAGTTGCTTTGG 60.319 55.000 5.62 5.21 42.66 3.28
293 294 0.316204 CTCCTTGCAGTTGCTTTGGG 59.684 55.000 5.62 2.97 42.66 4.12
294 295 0.106268 TCCTTGCAGTTGCTTTGGGA 60.106 50.000 5.62 5.07 42.66 4.37
295 296 0.032540 CCTTGCAGTTGCTTTGGGAC 59.967 55.000 5.62 0.00 42.66 4.46
296 297 0.318107 CTTGCAGTTGCTTTGGGACG 60.318 55.000 5.62 0.00 42.66 4.79
297 298 1.034838 TTGCAGTTGCTTTGGGACGT 61.035 50.000 5.62 0.00 42.66 4.34
298 299 1.034838 TGCAGTTGCTTTGGGACGTT 61.035 50.000 5.62 0.00 42.66 3.99
299 300 0.594796 GCAGTTGCTTTGGGACGTTG 60.595 55.000 0.00 0.00 38.21 4.10
300 301 0.594796 CAGTTGCTTTGGGACGTTGC 60.595 55.000 0.00 0.00 0.00 4.17
301 302 0.751643 AGTTGCTTTGGGACGTTGCT 60.752 50.000 0.00 0.00 0.00 3.91
302 303 0.948678 GTTGCTTTGGGACGTTGCTA 59.051 50.000 0.00 0.00 0.00 3.49
303 304 0.948678 TTGCTTTGGGACGTTGCTAC 59.051 50.000 0.00 0.00 0.00 3.58
304 305 0.107831 TGCTTTGGGACGTTGCTACT 59.892 50.000 0.00 0.00 0.00 2.57
305 306 0.796927 GCTTTGGGACGTTGCTACTC 59.203 55.000 0.00 0.00 0.00 2.59
306 307 1.439679 CTTTGGGACGTTGCTACTCC 58.560 55.000 0.00 7.79 0.00 3.85
307 308 1.002087 CTTTGGGACGTTGCTACTCCT 59.998 52.381 13.31 0.00 0.00 3.69
308 309 0.606604 TTGGGACGTTGCTACTCCTC 59.393 55.000 13.31 7.18 0.00 3.71
309 310 1.255667 TGGGACGTTGCTACTCCTCC 61.256 60.000 13.31 7.14 0.00 4.30
310 311 1.255667 GGGACGTTGCTACTCCTCCA 61.256 60.000 13.31 0.00 0.00 3.86
311 312 0.173708 GGACGTTGCTACTCCTCCAG 59.826 60.000 0.00 0.00 0.00 3.86
312 313 0.173708 GACGTTGCTACTCCTCCAGG 59.826 60.000 0.00 0.00 0.00 4.45
313 314 0.251653 ACGTTGCTACTCCTCCAGGA 60.252 55.000 0.00 0.00 43.08 3.86
314 315 0.173708 CGTTGCTACTCCTCCAGGAC 59.826 60.000 0.00 0.00 39.78 3.85
315 316 1.562783 GTTGCTACTCCTCCAGGACT 58.437 55.000 0.00 0.00 39.78 3.85
316 317 2.736347 GTTGCTACTCCTCCAGGACTA 58.264 52.381 0.00 0.00 39.78 2.59
317 318 3.301274 GTTGCTACTCCTCCAGGACTAT 58.699 50.000 0.00 0.00 39.78 2.12
318 319 3.689872 TGCTACTCCTCCAGGACTATT 57.310 47.619 0.00 0.00 39.78 1.73
319 320 3.995636 TGCTACTCCTCCAGGACTATTT 58.004 45.455 0.00 0.00 39.78 1.40
320 321 3.961408 TGCTACTCCTCCAGGACTATTTC 59.039 47.826 0.00 0.00 39.78 2.17
321 322 3.322541 GCTACTCCTCCAGGACTATTTCC 59.677 52.174 0.00 0.00 46.33 3.13
332 333 2.357952 GGACTATTTCCGGACATTTGGC 59.642 50.000 8.70 4.60 33.46 4.52
333 334 2.357952 GACTATTTCCGGACATTTGGCC 59.642 50.000 8.70 0.00 40.84 5.36
334 335 2.025321 ACTATTTCCGGACATTTGGCCT 60.025 45.455 8.70 0.00 42.58 5.19
335 336 2.818751 ATTTCCGGACATTTGGCCTA 57.181 45.000 1.83 0.00 42.58 3.93
336 337 1.828979 TTTCCGGACATTTGGCCTAC 58.171 50.000 1.83 0.00 42.58 3.18
337 338 0.034863 TTCCGGACATTTGGCCTACC 60.035 55.000 1.83 0.00 42.58 3.18
348 349 0.837272 TGGCCTACCATCCTACTTGC 59.163 55.000 3.32 0.00 42.67 4.01
349 350 0.108774 GGCCTACCATCCTACTTGCC 59.891 60.000 0.00 0.00 35.26 4.52
350 351 0.837272 GCCTACCATCCTACTTGCCA 59.163 55.000 0.00 0.00 0.00 4.92
351 352 1.421646 GCCTACCATCCTACTTGCCAT 59.578 52.381 0.00 0.00 0.00 4.40
352 353 2.158608 GCCTACCATCCTACTTGCCATT 60.159 50.000 0.00 0.00 0.00 3.16
353 354 3.744660 CCTACCATCCTACTTGCCATTC 58.255 50.000 0.00 0.00 0.00 2.67
354 355 3.392616 CCTACCATCCTACTTGCCATTCT 59.607 47.826 0.00 0.00 0.00 2.40
355 356 4.141390 CCTACCATCCTACTTGCCATTCTT 60.141 45.833 0.00 0.00 0.00 2.52
356 357 4.322057 ACCATCCTACTTGCCATTCTTT 57.678 40.909 0.00 0.00 0.00 2.52
357 358 4.019174 ACCATCCTACTTGCCATTCTTTG 58.981 43.478 0.00 0.00 0.00 2.77
370 371 3.841643 CATTCTTTGGAAGATGTGTGGC 58.158 45.455 0.00 0.00 37.38 5.01
371 372 2.957402 TCTTTGGAAGATGTGTGGCT 57.043 45.000 0.00 0.00 31.20 4.75
372 373 2.783135 TCTTTGGAAGATGTGTGGCTC 58.217 47.619 0.00 0.00 31.20 4.70
373 374 2.106338 TCTTTGGAAGATGTGTGGCTCA 59.894 45.455 0.00 0.00 31.20 4.26
374 375 1.896220 TTGGAAGATGTGTGGCTCAC 58.104 50.000 12.54 12.54 46.31 3.51
375 376 0.036732 TGGAAGATGTGTGGCTCACC 59.963 55.000 16.29 2.89 45.61 4.02
376 377 0.326264 GGAAGATGTGTGGCTCACCT 59.674 55.000 16.29 7.19 45.61 4.00
377 378 1.555075 GGAAGATGTGTGGCTCACCTA 59.445 52.381 16.29 0.00 45.61 3.08
378 379 2.027192 GGAAGATGTGTGGCTCACCTAA 60.027 50.000 16.29 0.00 45.61 2.69
379 380 2.770164 AGATGTGTGGCTCACCTAAC 57.230 50.000 16.29 5.98 45.61 2.34
380 381 1.977854 AGATGTGTGGCTCACCTAACA 59.022 47.619 16.29 0.00 45.61 2.41
381 382 2.371841 AGATGTGTGGCTCACCTAACAA 59.628 45.455 16.29 0.00 45.61 2.83
382 383 2.719531 TGTGTGGCTCACCTAACAAA 57.280 45.000 16.29 0.00 45.61 2.83
383 384 3.006112 TGTGTGGCTCACCTAACAAAA 57.994 42.857 16.29 0.00 45.61 2.44
384 385 3.357203 TGTGTGGCTCACCTAACAAAAA 58.643 40.909 16.29 0.00 45.61 1.94
405 406 6.371809 AAAAGTTTAACGCAATGAGTCTCA 57.628 33.333 4.68 4.68 0.00 3.27
406 407 4.992381 AGTTTAACGCAATGAGTCTCAC 57.008 40.909 4.21 0.00 0.00 3.51
407 408 3.746492 AGTTTAACGCAATGAGTCTCACC 59.254 43.478 4.21 0.00 0.00 4.02
408 409 2.380084 TAACGCAATGAGTCTCACCC 57.620 50.000 4.21 0.00 0.00 4.61
409 410 0.321653 AACGCAATGAGTCTCACCCC 60.322 55.000 4.21 0.00 0.00 4.95
410 411 1.194781 ACGCAATGAGTCTCACCCCT 61.195 55.000 4.21 0.00 0.00 4.79
411 412 0.460987 CGCAATGAGTCTCACCCCTC 60.461 60.000 4.21 0.00 0.00 4.30
412 413 0.908198 GCAATGAGTCTCACCCCTCT 59.092 55.000 4.21 0.00 0.00 3.69
413 414 1.134551 GCAATGAGTCTCACCCCTCTC 60.135 57.143 4.21 0.00 0.00 3.20
414 415 1.135915 CAATGAGTCTCACCCCTCTCG 59.864 57.143 4.21 0.00 0.00 4.04
415 416 1.040339 ATGAGTCTCACCCCTCTCGC 61.040 60.000 4.21 0.00 0.00 5.03
416 417 2.363147 AGTCTCACCCCTCTCGCC 60.363 66.667 0.00 0.00 0.00 5.54
417 418 2.363147 GTCTCACCCCTCTCGCCT 60.363 66.667 0.00 0.00 0.00 5.52
418 419 2.043852 TCTCACCCCTCTCGCCTC 60.044 66.667 0.00 0.00 0.00 4.70
419 420 2.363018 CTCACCCCTCTCGCCTCA 60.363 66.667 0.00 0.00 0.00 3.86
420 421 2.680352 TCACCCCTCTCGCCTCAC 60.680 66.667 0.00 0.00 0.00 3.51
421 422 3.775654 CACCCCTCTCGCCTCACC 61.776 72.222 0.00 0.00 0.00 4.02
424 425 3.382832 CCCTCTCGCCTCACCGTT 61.383 66.667 0.00 0.00 0.00 4.44
425 426 2.657237 CCTCTCGCCTCACCGTTT 59.343 61.111 0.00 0.00 0.00 3.60
426 427 1.738099 CCTCTCGCCTCACCGTTTG 60.738 63.158 0.00 0.00 0.00 2.93
427 428 1.289066 CTCTCGCCTCACCGTTTGA 59.711 57.895 0.00 0.00 0.00 2.69
428 429 0.319555 CTCTCGCCTCACCGTTTGAA 60.320 55.000 0.00 0.00 32.21 2.69
429 430 0.105224 TCTCGCCTCACCGTTTGAAA 59.895 50.000 0.00 0.00 32.21 2.69
430 431 0.234884 CTCGCCTCACCGTTTGAAAC 59.765 55.000 0.00 0.00 32.21 2.78
431 432 0.462225 TCGCCTCACCGTTTGAAACA 60.462 50.000 8.93 0.00 32.21 2.83
432 433 0.591170 CGCCTCACCGTTTGAAACAT 59.409 50.000 8.93 0.00 32.21 2.71
433 434 1.001815 CGCCTCACCGTTTGAAACATT 60.002 47.619 8.93 0.00 32.21 2.71
434 435 2.393764 GCCTCACCGTTTGAAACATTG 58.606 47.619 8.93 4.40 32.21 2.82
435 436 2.223711 GCCTCACCGTTTGAAACATTGT 60.224 45.455 8.93 0.00 32.21 2.71
436 437 3.736740 GCCTCACCGTTTGAAACATTGTT 60.737 43.478 8.93 0.00 32.21 2.83
437 438 3.796178 CCTCACCGTTTGAAACATTGTTG 59.204 43.478 8.93 0.00 32.21 3.33
438 439 4.439426 CCTCACCGTTTGAAACATTGTTGA 60.439 41.667 8.93 2.19 32.21 3.18
439 440 4.416620 TCACCGTTTGAAACATTGTTGAC 58.583 39.130 8.93 1.82 0.00 3.18
440 441 3.239483 CACCGTTTGAAACATTGTTGACG 59.761 43.478 8.93 10.82 0.00 4.35
441 442 3.127203 ACCGTTTGAAACATTGTTGACGA 59.873 39.130 20.10 9.68 0.00 4.20
442 443 4.099120 CCGTTTGAAACATTGTTGACGAA 58.901 39.130 20.10 13.49 0.00 3.85
443 444 4.737765 CCGTTTGAAACATTGTTGACGAAT 59.262 37.500 20.10 0.70 0.00 3.34
444 445 5.231147 CCGTTTGAAACATTGTTGACGAATT 59.769 36.000 20.10 0.10 0.00 2.17
445 446 6.237701 CCGTTTGAAACATTGTTGACGAATTT 60.238 34.615 20.10 0.00 0.00 1.82
446 447 7.043986 CCGTTTGAAACATTGTTGACGAATTTA 60.044 33.333 20.10 0.00 0.00 1.40
447 448 7.781156 CGTTTGAAACATTGTTGACGAATTTAC 59.219 33.333 8.93 5.26 0.00 2.01
448 449 8.587950 GTTTGAAACATTGTTGACGAATTTACA 58.412 29.630 2.13 0.00 0.00 2.41
449 450 7.672351 TGAAACATTGTTGACGAATTTACAC 57.328 32.000 2.13 0.00 0.00 2.90
450 451 7.476667 TGAAACATTGTTGACGAATTTACACT 58.523 30.769 2.13 0.00 0.00 3.55
451 452 7.971168 TGAAACATTGTTGACGAATTTACACTT 59.029 29.630 2.13 0.00 0.00 3.16
452 453 8.696410 AAACATTGTTGACGAATTTACACTTT 57.304 26.923 2.13 0.00 0.00 2.66
453 454 7.678194 ACATTGTTGACGAATTTACACTTTG 57.322 32.000 0.00 0.00 0.00 2.77
454 455 6.695278 ACATTGTTGACGAATTTACACTTTGG 59.305 34.615 0.00 0.00 0.00 3.28
455 456 6.438259 TTGTTGACGAATTTACACTTTGGA 57.562 33.333 0.00 0.00 0.00 3.53
456 457 5.812652 TGTTGACGAATTTACACTTTGGAC 58.187 37.500 0.00 0.00 0.00 4.02
457 458 5.587043 TGTTGACGAATTTACACTTTGGACT 59.413 36.000 0.00 0.00 0.00 3.85
458 459 6.094325 TGTTGACGAATTTACACTTTGGACTT 59.906 34.615 0.00 0.00 0.00 3.01
459 460 6.055231 TGACGAATTTACACTTTGGACTTG 57.945 37.500 0.00 0.00 0.00 3.16
460 461 5.587043 TGACGAATTTACACTTTGGACTTGT 59.413 36.000 0.00 0.00 0.00 3.16
461 462 6.762187 TGACGAATTTACACTTTGGACTTGTA 59.238 34.615 0.00 0.00 0.00 2.41
462 463 7.042321 TGACGAATTTACACTTTGGACTTGTAG 60.042 37.037 0.00 0.00 0.00 2.74
463 464 6.987992 ACGAATTTACACTTTGGACTTGTAGA 59.012 34.615 0.00 0.00 0.00 2.59
464 465 7.170998 ACGAATTTACACTTTGGACTTGTAGAG 59.829 37.037 0.00 0.00 0.00 2.43
465 466 7.360101 CGAATTTACACTTTGGACTTGTAGAGG 60.360 40.741 0.00 0.00 0.00 3.69
466 467 5.881923 TTACACTTTGGACTTGTAGAGGT 57.118 39.130 0.00 0.00 0.00 3.85
467 468 4.772886 ACACTTTGGACTTGTAGAGGTT 57.227 40.909 0.00 0.00 0.00 3.50
468 469 5.112129 ACACTTTGGACTTGTAGAGGTTT 57.888 39.130 0.00 0.00 0.00 3.27
469 470 5.506708 ACACTTTGGACTTGTAGAGGTTTT 58.493 37.500 0.00 0.00 0.00 2.43
470 471 5.589050 ACACTTTGGACTTGTAGAGGTTTTC 59.411 40.000 0.00 0.00 0.00 2.29
471 472 5.588648 CACTTTGGACTTGTAGAGGTTTTCA 59.411 40.000 0.00 0.00 0.00 2.69
472 473 5.823045 ACTTTGGACTTGTAGAGGTTTTCAG 59.177 40.000 0.00 0.00 0.00 3.02
473 474 5.623956 TTGGACTTGTAGAGGTTTTCAGA 57.376 39.130 0.00 0.00 0.00 3.27
474 475 5.623956 TGGACTTGTAGAGGTTTTCAGAA 57.376 39.130 0.00 0.00 0.00 3.02
475 476 5.365619 TGGACTTGTAGAGGTTTTCAGAAC 58.634 41.667 0.00 0.00 0.00 3.01
476 477 4.755629 GGACTTGTAGAGGTTTTCAGAACC 59.244 45.833 0.00 0.00 40.58 3.62
487 488 5.489249 GGTTTTCAGAACCTAGTCTAAGGG 58.511 45.833 0.81 0.00 41.32 3.95
488 489 5.012871 GGTTTTCAGAACCTAGTCTAAGGGT 59.987 44.000 0.81 0.00 40.13 4.34
489 490 6.212187 GGTTTTCAGAACCTAGTCTAAGGGTA 59.788 42.308 0.81 0.00 36.40 3.69
490 491 6.847421 TTTCAGAACCTAGTCTAAGGGTAC 57.153 41.667 0.00 0.00 36.40 3.34
491 492 5.525454 TCAGAACCTAGTCTAAGGGTACA 57.475 43.478 0.00 0.00 36.40 2.90
492 493 5.259632 TCAGAACCTAGTCTAAGGGTACAC 58.740 45.833 0.00 0.00 36.40 2.90
493 494 4.096081 CAGAACCTAGTCTAAGGGTACACG 59.904 50.000 0.00 0.00 36.40 4.49
494 495 3.728385 ACCTAGTCTAAGGGTACACGT 57.272 47.619 0.00 0.00 41.32 4.49
495 496 4.039603 ACCTAGTCTAAGGGTACACGTT 57.960 45.455 0.00 0.00 41.32 3.99
496 497 5.179452 ACCTAGTCTAAGGGTACACGTTA 57.821 43.478 0.00 0.00 41.32 3.18
497 498 5.760131 ACCTAGTCTAAGGGTACACGTTAT 58.240 41.667 0.00 0.00 41.32 1.89
498 499 5.591877 ACCTAGTCTAAGGGTACACGTTATG 59.408 44.000 0.00 0.00 41.32 1.90
499 500 4.382345 AGTCTAAGGGTACACGTTATGC 57.618 45.455 0.00 0.00 0.00 3.14
500 501 3.131755 AGTCTAAGGGTACACGTTATGCC 59.868 47.826 0.00 0.00 0.00 4.40
501 502 3.131755 GTCTAAGGGTACACGTTATGCCT 59.868 47.826 0.00 0.00 0.00 4.75
502 503 3.770933 TCTAAGGGTACACGTTATGCCTT 59.229 43.478 0.00 0.00 34.01 4.35
503 504 2.396590 AGGGTACACGTTATGCCTTG 57.603 50.000 0.00 0.00 0.00 3.61
504 505 1.065709 AGGGTACACGTTATGCCTTGG 60.066 52.381 0.00 0.00 0.00 3.61
505 506 1.339342 GGGTACACGTTATGCCTTGGT 60.339 52.381 0.00 0.00 0.00 3.67
506 507 1.735571 GGTACACGTTATGCCTTGGTG 59.264 52.381 0.00 0.00 34.87 4.17
507 508 2.613474 GGTACACGTTATGCCTTGGTGA 60.613 50.000 0.00 0.00 33.08 4.02
508 509 2.264005 ACACGTTATGCCTTGGTGAA 57.736 45.000 0.00 0.00 33.08 3.18
509 510 2.790433 ACACGTTATGCCTTGGTGAAT 58.210 42.857 0.00 0.00 33.08 2.57
510 511 3.945346 ACACGTTATGCCTTGGTGAATA 58.055 40.909 0.00 0.00 33.08 1.75
551 552 5.805994 AGCGCTAACTTATCTCTTGTAACAC 59.194 40.000 8.99 0.00 0.00 3.32
552 553 5.805994 GCGCTAACTTATCTCTTGTAACACT 59.194 40.000 0.00 0.00 0.00 3.55
553 554 6.971184 GCGCTAACTTATCTCTTGTAACACTA 59.029 38.462 0.00 0.00 0.00 2.74
554 555 7.487189 GCGCTAACTTATCTCTTGTAACACTAA 59.513 37.037 0.00 0.00 0.00 2.24
555 556 9.350357 CGCTAACTTATCTCTTGTAACACTAAA 57.650 33.333 0.00 0.00 0.00 1.85
593 594 1.204704 TCAACCTCTGTGTATCCTGCG 59.795 52.381 0.00 0.00 0.00 5.18
594 595 0.108138 AACCTCTGTGTATCCTGCGC 60.108 55.000 0.00 0.00 0.00 6.09
595 596 1.227380 CCTCTGTGTATCCTGCGCC 60.227 63.158 4.18 0.00 0.00 6.53
613 614 2.741878 CGCCATTCGTCTTGGGTATTCT 60.742 50.000 3.83 0.00 34.66 2.40
644 645 9.586435 GGTATTTTTGAATTTATCAGTTCCCAG 57.414 33.333 0.00 0.00 39.77 4.45
650 651 8.698973 TTGAATTTATCAGTTCCCAGTGTTTA 57.301 30.769 0.00 0.00 39.77 2.01
655 656 4.286297 TCAGTTCCCAGTGTTTAGATGG 57.714 45.455 0.00 0.00 0.00 3.51
658 659 3.191182 CCCAGTGTTTAGATGGGCC 57.809 57.895 0.00 0.00 46.86 5.80
659 660 0.331278 CCCAGTGTTTAGATGGGCCA 59.669 55.000 9.61 9.61 46.86 5.36
693 696 3.058914 GGCCGTGTGCATCTTAATCATAC 60.059 47.826 0.00 0.00 43.89 2.39
706 709 9.661187 CATCTTAATCATACAGAAACTGAATGC 57.339 33.333 5.76 0.00 35.18 3.56
725 728 1.417592 GTGCTCGCTTGATGTGACG 59.582 57.895 0.00 0.00 0.00 4.35
728 731 1.336424 TGCTCGCTTGATGTGACGTTA 60.336 47.619 0.00 0.00 0.00 3.18
745 748 8.233868 TGTGACGTTATGAATCAATAAAAGTGG 58.766 33.333 0.00 0.00 0.00 4.00
754 757 8.554835 TGAATCAATAAAAGTGGTCGTTATCA 57.445 30.769 0.00 0.00 0.00 2.15
762 768 9.804758 ATAAAAGTGGTCGTTATCAAAAACAAA 57.195 25.926 0.00 0.00 0.00 2.83
831 837 1.149361 GAACGCGTGACTCAACCACA 61.149 55.000 14.98 0.00 34.36 4.17
857 863 4.619227 AACACAGGTCCACGCCCG 62.619 66.667 0.00 0.00 0.00 6.13
906 928 1.084289 GCACGGTACAAATCCCTCAC 58.916 55.000 0.00 0.00 0.00 3.51
932 954 2.049433 CGAGACCACACACCGTCC 60.049 66.667 0.00 0.00 0.00 4.79
942 964 2.555325 CACACACCGTCCTAGTAGTCAA 59.445 50.000 0.00 0.00 0.00 3.18
951 973 4.922103 CGTCCTAGTAGTCAAAGTTGAACC 59.078 45.833 0.00 0.00 39.21 3.62
967 989 1.452145 AACCCAACACACACATCCGC 61.452 55.000 0.00 0.00 0.00 5.54
980 1002 2.749865 ATCCGCACGCACAAATCCG 61.750 57.895 0.00 0.00 0.00 4.18
1056 1078 2.433318 GTGTGCGTGCTCCTCCTC 60.433 66.667 0.00 0.00 0.00 3.71
1062 1084 2.124693 CGTGCTCCTCCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
1077 1099 3.827898 CTCCTCCTGTCGGCCGAC 61.828 72.222 43.88 43.88 44.77 4.79
1134 1156 3.625897 CCAGAGGTGGCCGTGACA 61.626 66.667 0.00 0.00 36.89 3.58
1143 1165 2.032634 GGCCGTGACAATCGAAGCA 61.033 57.895 0.00 0.00 0.00 3.91
1146 1168 0.716108 CCGTGACAATCGAAGCAGAC 59.284 55.000 0.00 0.00 0.00 3.51
1153 1175 2.486636 AATCGAAGCAGACGCCGACA 62.487 55.000 0.00 0.00 39.83 4.35
1224 1249 1.079543 GCTGAGCACCATCGACTGT 60.080 57.895 0.00 0.00 0.00 3.55
1314 1339 3.434319 CGCTGCAAGGCCGACAAT 61.434 61.111 0.00 0.00 0.00 2.71
1336 1361 1.271656 GCAACGACTGGTGTAGGTAGT 59.728 52.381 0.00 0.00 0.00 2.73
1338 1363 2.555325 CAACGACTGGTGTAGGTAGTCA 59.445 50.000 0.00 0.00 40.57 3.41
1339 1364 2.434428 ACGACTGGTGTAGGTAGTCAG 58.566 52.381 0.00 0.00 40.57 3.51
1343 1368 0.968901 TGGTGTAGGTAGTCAGCCGG 60.969 60.000 0.00 0.00 0.00 6.13
1348 1373 2.547640 TAGGTAGTCAGCCGGCGAGT 62.548 60.000 23.20 24.21 0.00 4.18
1349 1374 2.102553 GTAGTCAGCCGGCGAGTC 59.897 66.667 25.03 18.00 0.00 3.36
1351 1376 2.697761 TAGTCAGCCGGCGAGTCAC 61.698 63.158 25.03 16.80 0.00 3.67
1360 1402 2.355837 GCGAGTCACGGCACAAGA 60.356 61.111 0.00 0.00 42.83 3.02
1370 1412 2.486966 GCACAAGAATGGAGCCGC 59.513 61.111 0.00 0.00 0.00 6.53
1430 1472 6.865834 ATAGATGTCCTTGTGTCTCTCTTT 57.134 37.500 0.00 0.00 0.00 2.52
1433 1475 6.872920 AGATGTCCTTGTGTCTCTCTTTATC 58.127 40.000 0.00 0.00 0.00 1.75
1462 1506 3.605749 ATGTCCTTGTGTCCCGCCG 62.606 63.158 0.00 0.00 0.00 6.46
1470 1514 3.781307 TGTCCCGCCGCTGCTAAT 61.781 61.111 0.00 0.00 34.43 1.73
1471 1515 2.513897 GTCCCGCCGCTGCTAATT 60.514 61.111 0.00 0.00 34.43 1.40
1472 1516 2.112815 GTCCCGCCGCTGCTAATTT 61.113 57.895 0.00 0.00 34.43 1.82
1528 1573 9.284594 GACGCTGCTATTTTAATTTCATTTACA 57.715 29.630 0.00 0.00 0.00 2.41
1546 1591 7.382488 TCATTTACATATAAACTCGAGCTCAGC 59.618 37.037 13.61 0.00 33.09 4.26
1550 1595 0.038618 TAAACTCGAGCTCAGCGCAA 60.039 50.000 13.61 0.00 42.61 4.85
1567 1612 3.360289 GCGCAAACAATACAAACGTTGAC 60.360 43.478 0.30 0.00 0.00 3.18
1588 1633 2.746269 GCTCACAAACACATGCACATT 58.254 42.857 0.00 0.00 0.00 2.71
1589 1634 3.608941 CGCTCACAAACACATGCACATTA 60.609 43.478 0.00 0.00 0.00 1.90
1628 1680 5.487488 TCCTATGAATTCACACACCCTAAGT 59.513 40.000 11.07 0.00 0.00 2.24
1678 1730 0.527565 ACATGAATGTTTCCCTGCGC 59.472 50.000 0.00 0.00 37.90 6.09
1688 1740 1.172180 TTCCCTGCGCCTTTGTTCTG 61.172 55.000 4.18 0.00 0.00 3.02
1692 1744 1.066908 CCTGCGCCTTTGTTCTGAAAA 59.933 47.619 4.18 0.00 0.00 2.29
1748 2217 3.679917 GCGGTGCTATATCCTACATGCAT 60.680 47.826 0.00 0.00 32.98 3.96
1750 2219 4.194640 GGTGCTATATCCTACATGCATGG 58.805 47.826 29.41 13.24 32.98 3.66
1767 2236 6.061022 TGCATGGGAAACTATAGAACAAGA 57.939 37.500 6.78 0.00 0.00 3.02
1798 2273 5.348164 ACAATTCAAAAGTGTTTTCCTCGG 58.652 37.500 0.00 0.00 36.06 4.63
1809 2285 3.067461 TGTTTTCCTCGGACCAACAAATG 59.933 43.478 7.21 0.00 29.61 2.32
1815 2291 3.334691 CTCGGACCAACAAATGAGCTAA 58.665 45.455 0.00 0.00 0.00 3.09
1826 2302 9.294030 CCAACAAATGAGCTAATCTATGTTTTC 57.706 33.333 6.97 0.00 31.08 2.29
1827 2303 9.294030 CAACAAATGAGCTAATCTATGTTTTCC 57.706 33.333 6.97 0.00 31.08 3.13
1939 2429 0.872388 CACCGGAAGTACAAAGCACC 59.128 55.000 9.46 0.00 0.00 5.01
1941 2431 1.270678 ACCGGAAGTACAAAGCACCTC 60.271 52.381 9.46 0.00 0.00 3.85
1946 2436 3.630312 GGAAGTACAAAGCACCTCAAACA 59.370 43.478 0.00 0.00 0.00 2.83
1979 2470 3.004839 ACATGAAGATATCGAGACCACCG 59.995 47.826 0.00 0.00 0.00 4.94
2052 3619 1.578583 CGACGGAACTTTCACCAACT 58.421 50.000 0.00 0.00 0.00 3.16
2055 3622 3.460103 GACGGAACTTTCACCAACTGTA 58.540 45.455 0.00 0.00 0.00 2.74
2181 3749 8.313292 GCTAAGACCTCATGAAGATATCTCAAT 58.687 37.037 5.51 0.00 0.00 2.57
2184 3752 7.669427 AGACCTCATGAAGATATCTCAATGAC 58.331 38.462 19.24 13.19 0.00 3.06
2186 3754 8.032045 ACCTCATGAAGATATCTCAATGACTT 57.968 34.615 19.24 10.75 0.00 3.01
2190 3758 9.993454 TCATGAAGATATCTCAATGACTTAAGG 57.007 33.333 19.24 0.00 0.00 2.69
2204 3772 4.016444 GACTTAAGGGAACATGGCATTCA 58.984 43.478 7.53 0.00 0.00 2.57
2209 3777 4.210724 AGGGAACATGGCATTCAATTTG 57.789 40.909 0.00 0.00 0.00 2.32
2210 3778 3.583966 AGGGAACATGGCATTCAATTTGT 59.416 39.130 0.00 0.00 0.00 2.83
2211 3779 4.776837 AGGGAACATGGCATTCAATTTGTA 59.223 37.500 0.00 0.00 0.00 2.41
2212 3780 5.248020 AGGGAACATGGCATTCAATTTGTAA 59.752 36.000 0.00 0.00 0.00 2.41
2213 3781 6.070078 AGGGAACATGGCATTCAATTTGTAAT 60.070 34.615 0.00 0.00 0.00 1.89
2214 3782 6.598850 GGGAACATGGCATTCAATTTGTAATT 59.401 34.615 0.00 0.00 0.00 1.40
2215 3783 7.121020 GGGAACATGGCATTCAATTTGTAATTT 59.879 33.333 0.00 0.00 0.00 1.82
2216 3784 7.964011 GGAACATGGCATTCAATTTGTAATTTG 59.036 33.333 0.00 0.00 0.00 2.32
2271 3840 1.920351 CCTATTGGGTAAGGGTGTGGT 59.080 52.381 0.00 0.00 0.00 4.16
2278 3847 1.280133 GGTAAGGGTGTGGTTAGGTCC 59.720 57.143 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.897621 GGTGGGAATGGGCTTCTTTG 59.102 55.000 0.00 0.00 34.08 2.77
1 2 0.786435 AGGTGGGAATGGGCTTCTTT 59.214 50.000 0.00 0.00 34.08 2.52
2 3 0.332972 GAGGTGGGAATGGGCTTCTT 59.667 55.000 0.00 0.00 34.08 2.52
4 5 0.259938 ATGAGGTGGGAATGGGCTTC 59.740 55.000 0.00 0.00 0.00 3.86
5 6 0.032813 CATGAGGTGGGAATGGGCTT 60.033 55.000 0.00 0.00 0.00 4.35
6 7 1.616921 CATGAGGTGGGAATGGGCT 59.383 57.895 0.00 0.00 0.00 5.19
7 8 1.456331 CCATGAGGTGGGAATGGGC 60.456 63.158 0.00 0.00 44.79 5.36
18 19 2.133281 TGGCATCTTCAACCATGAGG 57.867 50.000 0.00 0.00 36.78 3.86
19 20 3.737047 GCAATGGCATCTTCAACCATGAG 60.737 47.826 0.00 0.00 43.40 2.90
20 21 2.166870 GCAATGGCATCTTCAACCATGA 59.833 45.455 0.00 0.00 43.40 3.07
21 22 2.546778 GCAATGGCATCTTCAACCATG 58.453 47.619 0.00 0.00 43.40 3.66
22 23 1.483415 GGCAATGGCATCTTCAACCAT 59.517 47.619 0.00 0.00 46.15 3.55
23 24 0.896923 GGCAATGGCATCTTCAACCA 59.103 50.000 0.00 0.00 43.71 3.67
24 25 0.176449 GGGCAATGGCATCTTCAACC 59.824 55.000 9.51 0.00 43.71 3.77
25 26 0.179129 CGGGCAATGGCATCTTCAAC 60.179 55.000 9.51 0.00 43.71 3.18
26 27 1.947597 GCGGGCAATGGCATCTTCAA 61.948 55.000 9.51 0.00 43.71 2.69
27 28 2.417257 GCGGGCAATGGCATCTTCA 61.417 57.895 9.51 0.00 43.71 3.02
28 29 1.947597 TTGCGGGCAATGGCATCTTC 61.948 55.000 9.51 0.00 43.71 2.87
29 30 1.332144 ATTGCGGGCAATGGCATCTT 61.332 50.000 17.39 0.00 44.05 2.40
30 31 1.759299 ATTGCGGGCAATGGCATCT 60.759 52.632 17.39 0.00 44.05 2.90
31 32 2.816718 ATTGCGGGCAATGGCATC 59.183 55.556 17.39 0.00 44.05 3.91
37 38 0.244450 CAGTCAACATTGCGGGCAAT 59.756 50.000 12.85 12.85 46.35 3.56
38 39 1.659233 CAGTCAACATTGCGGGCAA 59.341 52.632 8.72 8.72 40.47 4.52
39 40 2.918345 GCAGTCAACATTGCGGGCA 61.918 57.895 0.00 0.00 0.00 5.36
40 41 2.126346 GCAGTCAACATTGCGGGC 60.126 61.111 0.00 0.00 0.00 6.13
41 42 0.179156 GATGCAGTCAACATTGCGGG 60.179 55.000 0.00 0.00 43.13 6.13
42 43 0.806868 AGATGCAGTCAACATTGCGG 59.193 50.000 0.00 0.00 43.13 5.69
43 44 1.466866 CCAGATGCAGTCAACATTGCG 60.467 52.381 0.00 0.00 43.13 4.85
44 45 1.542915 ACCAGATGCAGTCAACATTGC 59.457 47.619 0.00 0.00 40.67 3.56
45 46 2.163010 GGACCAGATGCAGTCAACATTG 59.837 50.000 6.21 0.00 34.58 2.82
46 47 2.040813 AGGACCAGATGCAGTCAACATT 59.959 45.455 6.21 0.00 34.58 2.71
47 48 1.632409 AGGACCAGATGCAGTCAACAT 59.368 47.619 6.21 0.00 34.58 2.71
48 49 1.059098 AGGACCAGATGCAGTCAACA 58.941 50.000 6.21 0.00 34.58 3.33
49 50 1.002430 TCAGGACCAGATGCAGTCAAC 59.998 52.381 6.21 0.00 34.58 3.18
50 51 1.351076 TCAGGACCAGATGCAGTCAA 58.649 50.000 6.21 0.00 34.58 3.18
51 52 1.351076 TTCAGGACCAGATGCAGTCA 58.649 50.000 6.21 0.00 34.58 3.41
52 53 2.479566 TTTCAGGACCAGATGCAGTC 57.520 50.000 0.00 0.00 0.00 3.51
53 54 2.107204 ACTTTTCAGGACCAGATGCAGT 59.893 45.455 0.00 0.00 0.00 4.40
54 55 2.787994 ACTTTTCAGGACCAGATGCAG 58.212 47.619 0.00 0.00 0.00 4.41
55 56 2.957402 ACTTTTCAGGACCAGATGCA 57.043 45.000 0.00 0.00 0.00 3.96
56 57 3.057245 GGAAACTTTTCAGGACCAGATGC 60.057 47.826 4.18 0.00 38.92 3.91
57 58 3.189287 CGGAAACTTTTCAGGACCAGATG 59.811 47.826 4.18 0.00 38.92 2.90
58 59 3.181443 ACGGAAACTTTTCAGGACCAGAT 60.181 43.478 6.77 0.00 38.92 2.90
59 60 2.171870 ACGGAAACTTTTCAGGACCAGA 59.828 45.455 6.77 0.00 38.92 3.86
60 61 2.572290 ACGGAAACTTTTCAGGACCAG 58.428 47.619 6.77 0.00 38.92 4.00
61 62 2.721425 ACGGAAACTTTTCAGGACCA 57.279 45.000 6.77 0.00 38.92 4.02
62 63 4.383173 TCTTACGGAAACTTTTCAGGACC 58.617 43.478 6.77 0.00 38.92 4.46
63 64 5.050295 CACTCTTACGGAAACTTTTCAGGAC 60.050 44.000 6.77 0.00 38.92 3.85
64 65 5.054477 CACTCTTACGGAAACTTTTCAGGA 58.946 41.667 6.77 0.00 38.92 3.86
65 66 5.054477 TCACTCTTACGGAAACTTTTCAGG 58.946 41.667 6.77 0.05 38.92 3.86
66 67 6.292919 CCTTCACTCTTACGGAAACTTTTCAG 60.293 42.308 4.18 2.51 38.92 3.02
67 68 5.526111 CCTTCACTCTTACGGAAACTTTTCA 59.474 40.000 4.18 0.00 38.92 2.69
68 69 5.526479 ACCTTCACTCTTACGGAAACTTTTC 59.474 40.000 0.00 0.00 36.46 2.29
69 70 5.434408 ACCTTCACTCTTACGGAAACTTTT 58.566 37.500 0.00 0.00 0.00 2.27
70 71 5.032327 ACCTTCACTCTTACGGAAACTTT 57.968 39.130 0.00 0.00 0.00 2.66
71 72 4.684484 ACCTTCACTCTTACGGAAACTT 57.316 40.909 0.00 0.00 0.00 2.66
72 73 4.684484 AACCTTCACTCTTACGGAAACT 57.316 40.909 0.00 0.00 0.00 2.66
73 74 5.295045 TGAAAACCTTCACTCTTACGGAAAC 59.705 40.000 0.00 0.00 36.62 2.78
74 75 5.430007 TGAAAACCTTCACTCTTACGGAAA 58.570 37.500 0.00 0.00 36.62 3.13
75 76 5.026038 TGAAAACCTTCACTCTTACGGAA 57.974 39.130 0.00 0.00 36.62 4.30
76 77 4.675976 TGAAAACCTTCACTCTTACGGA 57.324 40.909 0.00 0.00 36.62 4.69
86 87 4.134563 GAGTAGCCAAGTGAAAACCTTCA 58.865 43.478 0.00 0.00 39.30 3.02
87 88 4.390264 AGAGTAGCCAAGTGAAAACCTTC 58.610 43.478 0.00 0.00 0.00 3.46
88 89 4.439253 AGAGTAGCCAAGTGAAAACCTT 57.561 40.909 0.00 0.00 0.00 3.50
89 90 5.248477 TCATAGAGTAGCCAAGTGAAAACCT 59.752 40.000 0.00 0.00 0.00 3.50
90 91 5.488341 TCATAGAGTAGCCAAGTGAAAACC 58.512 41.667 0.00 0.00 0.00 3.27
91 92 6.818644 TCATCATAGAGTAGCCAAGTGAAAAC 59.181 38.462 0.00 0.00 0.00 2.43
92 93 6.818644 GTCATCATAGAGTAGCCAAGTGAAAA 59.181 38.462 0.00 0.00 0.00 2.29
93 94 6.070824 TGTCATCATAGAGTAGCCAAGTGAAA 60.071 38.462 0.00 0.00 0.00 2.69
94 95 5.422012 TGTCATCATAGAGTAGCCAAGTGAA 59.578 40.000 0.00 0.00 0.00 3.18
95 96 4.956075 TGTCATCATAGAGTAGCCAAGTGA 59.044 41.667 0.00 0.00 0.00 3.41
96 97 5.268118 TGTCATCATAGAGTAGCCAAGTG 57.732 43.478 0.00 0.00 0.00 3.16
97 98 5.683509 GCTTGTCATCATAGAGTAGCCAAGT 60.684 44.000 0.00 0.00 31.73 3.16
98 99 4.749099 GCTTGTCATCATAGAGTAGCCAAG 59.251 45.833 0.00 0.00 0.00 3.61
99 100 4.406972 AGCTTGTCATCATAGAGTAGCCAA 59.593 41.667 0.00 0.00 0.00 4.52
100 101 3.963374 AGCTTGTCATCATAGAGTAGCCA 59.037 43.478 0.00 0.00 0.00 4.75
101 102 4.555262 GAGCTTGTCATCATAGAGTAGCC 58.445 47.826 0.00 0.00 0.00 3.93
102 103 4.225984 CGAGCTTGTCATCATAGAGTAGC 58.774 47.826 0.00 0.00 0.00 3.58
103 104 4.793071 CCGAGCTTGTCATCATAGAGTAG 58.207 47.826 0.00 0.00 0.00 2.57
104 105 3.004839 GCCGAGCTTGTCATCATAGAGTA 59.995 47.826 0.00 0.00 0.00 2.59
105 106 2.223923 GCCGAGCTTGTCATCATAGAGT 60.224 50.000 0.00 0.00 0.00 3.24
106 107 2.223900 TGCCGAGCTTGTCATCATAGAG 60.224 50.000 0.00 0.00 0.00 2.43
107 108 1.756538 TGCCGAGCTTGTCATCATAGA 59.243 47.619 0.00 0.00 0.00 1.98
108 109 1.863454 GTGCCGAGCTTGTCATCATAG 59.137 52.381 0.00 0.00 0.00 2.23
109 110 1.473257 GGTGCCGAGCTTGTCATCATA 60.473 52.381 0.00 0.00 0.00 2.15
110 111 0.745845 GGTGCCGAGCTTGTCATCAT 60.746 55.000 0.00 0.00 0.00 2.45
111 112 1.375908 GGTGCCGAGCTTGTCATCA 60.376 57.895 0.00 0.00 0.00 3.07
112 113 0.955428 TTGGTGCCGAGCTTGTCATC 60.955 55.000 0.00 0.00 0.00 2.92
113 114 0.957395 CTTGGTGCCGAGCTTGTCAT 60.957 55.000 0.00 0.00 0.00 3.06
114 115 1.597854 CTTGGTGCCGAGCTTGTCA 60.598 57.895 0.00 0.00 0.00 3.58
115 116 2.328099 CCTTGGTGCCGAGCTTGTC 61.328 63.158 0.00 0.00 0.00 3.18
116 117 2.281761 CCTTGGTGCCGAGCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
117 118 3.741476 GCCTTGGTGCCGAGCTTG 61.741 66.667 0.00 0.00 0.00 4.01
118 119 3.790416 TTGCCTTGGTGCCGAGCTT 62.790 57.895 0.00 0.00 0.00 3.74
119 120 3.675126 TATTTGCCTTGGTGCCGAGCT 62.675 52.381 0.00 0.00 0.00 4.09
120 121 1.312371 TATTTGCCTTGGTGCCGAGC 61.312 55.000 0.00 0.00 0.00 5.03
121 122 1.392589 ATATTTGCCTTGGTGCCGAG 58.607 50.000 0.00 0.00 0.00 4.63
122 123 1.748493 GAATATTTGCCTTGGTGCCGA 59.252 47.619 0.00 0.00 0.00 5.54
123 124 1.750778 AGAATATTTGCCTTGGTGCCG 59.249 47.619 0.00 0.00 0.00 5.69
124 125 2.101415 GGAGAATATTTGCCTTGGTGCC 59.899 50.000 0.00 0.00 0.00 5.01
125 126 2.760092 TGGAGAATATTTGCCTTGGTGC 59.240 45.455 8.46 0.00 0.00 5.01
126 127 5.404466 TTTGGAGAATATTTGCCTTGGTG 57.596 39.130 8.46 0.00 0.00 4.17
127 128 5.569428 GCTTTTGGAGAATATTTGCCTTGGT 60.569 40.000 8.46 0.00 0.00 3.67
128 129 4.872124 GCTTTTGGAGAATATTTGCCTTGG 59.128 41.667 8.46 0.00 0.00 3.61
129 130 5.349543 GTGCTTTTGGAGAATATTTGCCTTG 59.650 40.000 8.46 0.30 0.00 3.61
130 131 5.011943 TGTGCTTTTGGAGAATATTTGCCTT 59.988 36.000 8.46 0.00 0.00 4.35
131 132 4.527816 TGTGCTTTTGGAGAATATTTGCCT 59.472 37.500 8.46 0.00 0.00 4.75
132 133 4.819769 TGTGCTTTTGGAGAATATTTGCC 58.180 39.130 0.00 0.00 0.00 4.52
133 134 5.292589 CCATGTGCTTTTGGAGAATATTTGC 59.707 40.000 0.00 0.00 34.81 3.68
134 135 5.813672 CCCATGTGCTTTTGGAGAATATTTG 59.186 40.000 0.00 0.00 34.81 2.32
135 136 5.627503 GCCCATGTGCTTTTGGAGAATATTT 60.628 40.000 0.00 0.00 34.81 1.40
136 137 4.141869 GCCCATGTGCTTTTGGAGAATATT 60.142 41.667 0.00 0.00 34.81 1.28
137 138 3.385755 GCCCATGTGCTTTTGGAGAATAT 59.614 43.478 0.00 0.00 34.81 1.28
138 139 2.760092 GCCCATGTGCTTTTGGAGAATA 59.240 45.455 0.00 0.00 34.81 1.75
139 140 1.551883 GCCCATGTGCTTTTGGAGAAT 59.448 47.619 0.00 0.00 34.81 2.40
140 141 0.968405 GCCCATGTGCTTTTGGAGAA 59.032 50.000 0.00 0.00 34.81 2.87
141 142 0.899717 GGCCCATGTGCTTTTGGAGA 60.900 55.000 0.00 0.00 34.81 3.71
142 143 1.186917 TGGCCCATGTGCTTTTGGAG 61.187 55.000 0.00 0.00 34.81 3.86
143 144 0.762082 TTGGCCCATGTGCTTTTGGA 60.762 50.000 0.00 0.00 34.81 3.53
144 145 0.108207 TTTGGCCCATGTGCTTTTGG 59.892 50.000 0.00 0.00 0.00 3.28
145 146 1.964552 TTTTGGCCCATGTGCTTTTG 58.035 45.000 0.00 0.00 0.00 2.44
146 147 2.725221 TTTTTGGCCCATGTGCTTTT 57.275 40.000 0.00 0.00 0.00 2.27
162 163 1.549203 ATGTCGGGCATGAGCTTTTT 58.451 45.000 0.00 0.00 41.70 1.94
163 164 3.271250 ATGTCGGGCATGAGCTTTT 57.729 47.368 0.00 0.00 41.70 2.27
171 172 3.814268 GCGTTGCATGTCGGGCAT 61.814 61.111 0.00 0.00 41.58 4.40
173 174 4.166011 GAGCGTTGCATGTCGGGC 62.166 66.667 0.00 0.00 0.00 6.13
174 175 3.499737 GGAGCGTTGCATGTCGGG 61.500 66.667 0.00 0.00 0.00 5.14
175 176 2.741985 TGGAGCGTTGCATGTCGG 60.742 61.111 0.00 0.00 0.00 4.79
176 177 1.568612 AACTGGAGCGTTGCATGTCG 61.569 55.000 0.00 0.00 0.00 4.35
177 178 0.110056 CAACTGGAGCGTTGCATGTC 60.110 55.000 0.00 0.00 37.98 3.06
178 179 0.534877 TCAACTGGAGCGTTGCATGT 60.535 50.000 0.00 0.00 42.98 3.21
179 180 0.592637 TTCAACTGGAGCGTTGCATG 59.407 50.000 0.00 0.00 42.98 4.06
180 181 0.877071 CTTCAACTGGAGCGTTGCAT 59.123 50.000 0.00 0.00 42.98 3.96
181 182 0.179059 TCTTCAACTGGAGCGTTGCA 60.179 50.000 0.00 0.00 42.98 4.08
182 183 0.235926 GTCTTCAACTGGAGCGTTGC 59.764 55.000 0.00 0.00 42.98 4.17
183 184 0.508641 CGTCTTCAACTGGAGCGTTG 59.491 55.000 0.00 0.00 44.26 4.10
184 185 0.387929 TCGTCTTCAACTGGAGCGTT 59.612 50.000 3.04 0.00 0.00 4.84
185 186 0.387929 TTCGTCTTCAACTGGAGCGT 59.612 50.000 3.04 0.00 0.00 5.07
186 187 1.497991 TTTCGTCTTCAACTGGAGCG 58.502 50.000 0.00 0.00 0.00 5.03
187 188 2.413371 GCATTTCGTCTTCAACTGGAGC 60.413 50.000 0.00 0.00 0.00 4.70
188 189 2.807967 TGCATTTCGTCTTCAACTGGAG 59.192 45.455 0.00 0.00 0.00 3.86
189 190 2.548057 GTGCATTTCGTCTTCAACTGGA 59.452 45.455 0.00 0.00 0.00 3.86
190 191 2.549754 AGTGCATTTCGTCTTCAACTGG 59.450 45.455 0.00 0.00 0.00 4.00
191 192 3.885484 AGTGCATTTCGTCTTCAACTG 57.115 42.857 0.00 0.00 0.00 3.16
192 193 6.204688 TGAATAAGTGCATTTCGTCTTCAACT 59.795 34.615 0.00 0.00 0.00 3.16
193 194 6.370593 TGAATAAGTGCATTTCGTCTTCAAC 58.629 36.000 0.00 0.00 0.00 3.18
194 195 6.552859 TGAATAAGTGCATTTCGTCTTCAA 57.447 33.333 0.00 0.00 0.00 2.69
195 196 6.371271 TGATGAATAAGTGCATTTCGTCTTCA 59.629 34.615 17.32 15.73 36.69 3.02
196 197 6.775088 TGATGAATAAGTGCATTTCGTCTTC 58.225 36.000 17.32 14.17 36.69 2.87
197 198 6.741992 TGATGAATAAGTGCATTTCGTCTT 57.258 33.333 17.32 7.49 36.69 3.01
198 199 6.932356 ATGATGAATAAGTGCATTTCGTCT 57.068 33.333 17.32 0.00 36.69 4.18
199 200 7.975866 AAATGATGAATAAGTGCATTTCGTC 57.024 32.000 0.00 7.21 35.02 4.20
200 201 7.201461 GCAAAATGATGAATAAGTGCATTTCGT 60.201 33.333 0.00 0.00 37.97 3.85
201 202 7.114920 GCAAAATGATGAATAAGTGCATTTCG 58.885 34.615 0.00 0.00 37.97 3.46
202 203 7.064847 TGGCAAAATGATGAATAAGTGCATTTC 59.935 33.333 0.00 0.00 37.97 2.17
203 204 6.879993 TGGCAAAATGATGAATAAGTGCATTT 59.120 30.769 0.00 0.00 39.92 2.32
204 205 6.408035 TGGCAAAATGATGAATAAGTGCATT 58.592 32.000 0.00 0.00 32.41 3.56
205 206 5.979993 TGGCAAAATGATGAATAAGTGCAT 58.020 33.333 0.00 0.00 32.41 3.96
206 207 5.402997 TGGCAAAATGATGAATAAGTGCA 57.597 34.783 0.00 0.00 32.41 4.57
207 208 6.238266 CCAATGGCAAAATGATGAATAAGTGC 60.238 38.462 0.00 0.00 0.00 4.40
208 209 6.819649 ACCAATGGCAAAATGATGAATAAGTG 59.180 34.615 0.00 0.00 0.00 3.16
209 210 6.949715 ACCAATGGCAAAATGATGAATAAGT 58.050 32.000 0.00 0.00 0.00 2.24
210 211 6.480981 GGACCAATGGCAAAATGATGAATAAG 59.519 38.462 0.00 0.00 0.00 1.73
211 212 6.156602 AGGACCAATGGCAAAATGATGAATAA 59.843 34.615 0.00 0.00 0.00 1.40
212 213 5.662208 AGGACCAATGGCAAAATGATGAATA 59.338 36.000 0.00 0.00 0.00 1.75
213 214 4.472108 AGGACCAATGGCAAAATGATGAAT 59.528 37.500 0.00 0.00 0.00 2.57
214 215 3.839490 AGGACCAATGGCAAAATGATGAA 59.161 39.130 0.00 0.00 0.00 2.57
215 216 3.443052 AGGACCAATGGCAAAATGATGA 58.557 40.909 0.00 0.00 0.00 2.92
216 217 3.899052 AGGACCAATGGCAAAATGATG 57.101 42.857 0.00 0.00 0.00 3.07
217 218 3.054948 CCAAGGACCAATGGCAAAATGAT 60.055 43.478 0.00 0.00 0.00 2.45
218 219 2.302445 CCAAGGACCAATGGCAAAATGA 59.698 45.455 0.00 0.00 0.00 2.57
219 220 2.702261 CCAAGGACCAATGGCAAAATG 58.298 47.619 0.00 0.00 0.00 2.32
226 227 1.065998 CAAATGGCCAAGGACCAATGG 60.066 52.381 10.96 11.13 41.49 3.16
227 228 1.065998 CCAAATGGCCAAGGACCAATG 60.066 52.381 10.96 0.00 41.49 2.82
228 229 1.278537 CCAAATGGCCAAGGACCAAT 58.721 50.000 10.96 0.00 41.49 3.16
229 230 2.757313 CCAAATGGCCAAGGACCAA 58.243 52.632 10.96 0.00 41.49 3.67
230 231 4.537260 CCAAATGGCCAAGGACCA 57.463 55.556 10.96 5.03 42.61 4.02
241 242 3.472652 CATCCCCATTCATTGCCAAATG 58.527 45.455 0.00 0.00 43.94 2.32
242 243 2.158726 GCATCCCCATTCATTGCCAAAT 60.159 45.455 0.00 0.00 0.00 2.32
243 244 1.209990 GCATCCCCATTCATTGCCAAA 59.790 47.619 0.00 0.00 0.00 3.28
244 245 0.831966 GCATCCCCATTCATTGCCAA 59.168 50.000 0.00 0.00 0.00 4.52
245 246 2.518772 GCATCCCCATTCATTGCCA 58.481 52.632 0.00 0.00 0.00 4.92
246 247 1.750297 GGCATCCCCATTCATTGCC 59.250 57.895 0.00 0.00 45.31 4.52
247 248 0.677842 GAGGCATCCCCATTCATTGC 59.322 55.000 0.00 0.00 35.39 3.56
248 249 1.335145 GGAGGCATCCCCATTCATTG 58.665 55.000 5.99 0.00 40.03 2.82
249 250 3.856774 GGAGGCATCCCCATTCATT 57.143 52.632 5.99 0.00 40.03 2.57
263 264 3.041469 GCAAGGAGCCAGGAGGAGG 62.041 68.421 0.00 0.00 36.89 4.30
264 265 2.254737 CTGCAAGGAGCCAGGAGGAG 62.255 65.000 0.00 0.00 44.83 3.69
265 266 2.203983 TGCAAGGAGCCAGGAGGA 60.204 61.111 0.00 0.00 44.83 3.71
266 267 2.134630 AACTGCAAGGAGCCAGGAGG 62.135 60.000 0.00 0.00 44.83 4.30
267 268 0.959372 CAACTGCAAGGAGCCAGGAG 60.959 60.000 0.00 0.00 44.83 3.69
268 269 1.073722 CAACTGCAAGGAGCCAGGA 59.926 57.895 0.00 0.00 44.83 3.86
269 270 2.633509 GCAACTGCAAGGAGCCAGG 61.634 63.158 0.00 0.00 44.83 4.45
270 271 1.177256 AAGCAACTGCAAGGAGCCAG 61.177 55.000 4.22 0.00 44.83 4.85
271 272 0.756442 AAAGCAACTGCAAGGAGCCA 60.756 50.000 4.22 0.00 44.83 4.75
272 273 0.319297 CAAAGCAACTGCAAGGAGCC 60.319 55.000 4.22 0.00 44.83 4.70
273 274 0.319297 CCAAAGCAACTGCAAGGAGC 60.319 55.000 4.22 0.00 45.16 4.70
274 275 0.316204 CCCAAAGCAACTGCAAGGAG 59.684 55.000 4.22 0.00 45.16 3.69
275 276 0.106268 TCCCAAAGCAACTGCAAGGA 60.106 50.000 4.22 1.60 45.16 3.36
276 277 0.032540 GTCCCAAAGCAACTGCAAGG 59.967 55.000 4.22 2.60 45.16 3.61
277 278 0.318107 CGTCCCAAAGCAACTGCAAG 60.318 55.000 4.22 0.00 45.16 4.01
278 279 1.034838 ACGTCCCAAAGCAACTGCAA 61.035 50.000 4.22 0.00 45.16 4.08
279 280 1.034838 AACGTCCCAAAGCAACTGCA 61.035 50.000 4.22 0.00 45.16 4.41
280 281 0.594796 CAACGTCCCAAAGCAACTGC 60.595 55.000 0.00 0.00 42.49 4.40
281 282 0.594796 GCAACGTCCCAAAGCAACTG 60.595 55.000 0.00 0.00 0.00 3.16
282 283 0.751643 AGCAACGTCCCAAAGCAACT 60.752 50.000 0.00 0.00 0.00 3.16
283 284 0.948678 TAGCAACGTCCCAAAGCAAC 59.051 50.000 0.00 0.00 0.00 4.17
284 285 0.948678 GTAGCAACGTCCCAAAGCAA 59.051 50.000 0.00 0.00 0.00 3.91
285 286 0.107831 AGTAGCAACGTCCCAAAGCA 59.892 50.000 0.00 0.00 0.00 3.91
286 287 0.796927 GAGTAGCAACGTCCCAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
287 288 1.002087 AGGAGTAGCAACGTCCCAAAG 59.998 52.381 0.00 0.00 0.00 2.77
288 289 1.001633 GAGGAGTAGCAACGTCCCAAA 59.998 52.381 0.00 0.00 0.00 3.28
289 290 0.606604 GAGGAGTAGCAACGTCCCAA 59.393 55.000 0.00 0.00 0.00 4.12
290 291 1.255667 GGAGGAGTAGCAACGTCCCA 61.256 60.000 0.00 0.00 35.75 4.37
291 292 1.255667 TGGAGGAGTAGCAACGTCCC 61.256 60.000 0.00 0.00 39.41 4.46
292 293 0.173708 CTGGAGGAGTAGCAACGTCC 59.826 60.000 0.00 0.00 40.22 4.79
293 294 0.173708 CCTGGAGGAGTAGCAACGTC 59.826 60.000 0.00 0.00 37.39 4.34
294 295 0.251653 TCCTGGAGGAGTAGCAACGT 60.252 55.000 0.00 0.00 39.78 3.99
295 296 0.173708 GTCCTGGAGGAGTAGCAACG 59.826 60.000 0.00 0.00 46.49 4.10
296 297 1.562783 AGTCCTGGAGGAGTAGCAAC 58.437 55.000 0.00 0.00 45.66 4.17
302 303 2.389715 CGGAAATAGTCCTGGAGGAGT 58.610 52.381 8.14 8.14 46.49 3.85
303 304 1.689273 CCGGAAATAGTCCTGGAGGAG 59.311 57.143 0.00 0.00 46.49 3.69
304 305 1.289830 TCCGGAAATAGTCCTGGAGGA 59.710 52.381 0.00 0.00 45.36 3.71
305 306 1.413077 GTCCGGAAATAGTCCTGGAGG 59.587 57.143 5.23 0.00 44.57 4.30
306 307 2.108168 TGTCCGGAAATAGTCCTGGAG 58.892 52.381 5.23 0.00 44.57 3.86
307 308 2.241281 TGTCCGGAAATAGTCCTGGA 57.759 50.000 5.23 0.00 45.36 3.86
308 309 3.560636 AATGTCCGGAAATAGTCCTGG 57.439 47.619 7.79 0.00 45.36 4.45
309 310 3.627577 CCAAATGTCCGGAAATAGTCCTG 59.372 47.826 7.79 1.01 45.36 3.86
310 311 3.886123 CCAAATGTCCGGAAATAGTCCT 58.114 45.455 7.79 0.00 45.36 3.85
311 312 2.357952 GCCAAATGTCCGGAAATAGTCC 59.642 50.000 7.79 0.00 43.90 3.85
312 313 2.357952 GGCCAAATGTCCGGAAATAGTC 59.642 50.000 7.79 0.00 0.00 2.59
313 314 2.025321 AGGCCAAATGTCCGGAAATAGT 60.025 45.455 7.79 0.00 0.00 2.12
314 315 2.654863 AGGCCAAATGTCCGGAAATAG 58.345 47.619 7.79 3.72 0.00 1.73
315 316 2.818751 AGGCCAAATGTCCGGAAATA 57.181 45.000 7.79 0.00 0.00 1.40
316 317 2.375146 GTAGGCCAAATGTCCGGAAAT 58.625 47.619 5.23 2.15 0.00 2.17
317 318 1.614850 GGTAGGCCAAATGTCCGGAAA 60.615 52.381 5.23 0.00 34.09 3.13
318 319 0.034863 GGTAGGCCAAATGTCCGGAA 60.035 55.000 5.23 0.00 34.09 4.30
319 320 1.202099 TGGTAGGCCAAATGTCCGGA 61.202 55.000 5.01 0.00 42.83 5.14
320 321 1.301623 TGGTAGGCCAAATGTCCGG 59.698 57.895 5.01 0.00 42.83 5.14
330 331 0.108774 GGCAAGTAGGATGGTAGGCC 59.891 60.000 0.00 0.00 0.00 5.19
331 332 0.837272 TGGCAAGTAGGATGGTAGGC 59.163 55.000 0.00 0.00 0.00 3.93
332 333 3.392616 AGAATGGCAAGTAGGATGGTAGG 59.607 47.826 0.00 0.00 0.00 3.18
333 334 4.696479 AGAATGGCAAGTAGGATGGTAG 57.304 45.455 0.00 0.00 0.00 3.18
334 335 5.192927 CAAAGAATGGCAAGTAGGATGGTA 58.807 41.667 0.00 0.00 0.00 3.25
335 336 4.019174 CAAAGAATGGCAAGTAGGATGGT 58.981 43.478 0.00 0.00 0.00 3.55
336 337 3.382546 CCAAAGAATGGCAAGTAGGATGG 59.617 47.826 0.00 0.00 43.80 3.51
337 338 4.644103 CCAAAGAATGGCAAGTAGGATG 57.356 45.455 0.00 0.00 43.80 3.51
349 350 3.508793 AGCCACACATCTTCCAAAGAATG 59.491 43.478 0.00 0.00 41.63 2.67
350 351 3.760684 GAGCCACACATCTTCCAAAGAAT 59.239 43.478 0.00 0.00 41.63 2.40
351 352 3.149196 GAGCCACACATCTTCCAAAGAA 58.851 45.455 0.00 0.00 41.63 2.52
352 353 2.106338 TGAGCCACACATCTTCCAAAGA 59.894 45.455 0.00 0.00 42.69 2.52
353 354 2.507484 TGAGCCACACATCTTCCAAAG 58.493 47.619 0.00 0.00 0.00 2.77
354 355 2.655090 TGAGCCACACATCTTCCAAA 57.345 45.000 0.00 0.00 0.00 3.28
381 382 6.691388 GTGAGACTCATTGCGTTAAACTTTTT 59.309 34.615 8.73 0.00 0.00 1.94
382 383 6.199393 GTGAGACTCATTGCGTTAAACTTTT 58.801 36.000 8.73 0.00 0.00 2.27
383 384 5.277828 GGTGAGACTCATTGCGTTAAACTTT 60.278 40.000 8.73 0.00 0.00 2.66
384 385 4.213482 GGTGAGACTCATTGCGTTAAACTT 59.787 41.667 8.73 0.00 0.00 2.66
385 386 3.746492 GGTGAGACTCATTGCGTTAAACT 59.254 43.478 8.73 0.00 0.00 2.66
386 387 3.120304 GGGTGAGACTCATTGCGTTAAAC 60.120 47.826 8.73 0.00 0.00 2.01
387 388 3.071479 GGGTGAGACTCATTGCGTTAAA 58.929 45.455 8.73 0.00 0.00 1.52
388 389 2.614481 GGGGTGAGACTCATTGCGTTAA 60.614 50.000 8.73 0.00 0.00 2.01
389 390 1.066430 GGGGTGAGACTCATTGCGTTA 60.066 52.381 8.73 0.00 0.00 3.18
390 391 0.321653 GGGGTGAGACTCATTGCGTT 60.322 55.000 8.73 0.00 0.00 4.84
391 392 1.194781 AGGGGTGAGACTCATTGCGT 61.195 55.000 8.73 0.00 0.00 5.24
392 393 0.460987 GAGGGGTGAGACTCATTGCG 60.461 60.000 8.73 0.00 33.95 4.85
393 394 0.908198 AGAGGGGTGAGACTCATTGC 59.092 55.000 8.73 0.00 36.20 3.56
394 395 1.135915 CGAGAGGGGTGAGACTCATTG 59.864 57.143 8.73 0.00 36.20 2.82
395 396 1.479709 CGAGAGGGGTGAGACTCATT 58.520 55.000 8.73 0.00 36.20 2.57
396 397 1.040339 GCGAGAGGGGTGAGACTCAT 61.040 60.000 8.73 0.00 36.20 2.90
397 398 1.679305 GCGAGAGGGGTGAGACTCA 60.679 63.158 0.00 0.00 36.20 3.41
398 399 2.419739 GGCGAGAGGGGTGAGACTC 61.420 68.421 0.00 0.00 0.00 3.36
399 400 2.363147 GGCGAGAGGGGTGAGACT 60.363 66.667 0.00 0.00 0.00 3.24
400 401 2.363147 AGGCGAGAGGGGTGAGAC 60.363 66.667 0.00 0.00 0.00 3.36
401 402 2.043852 GAGGCGAGAGGGGTGAGA 60.044 66.667 0.00 0.00 0.00 3.27
402 403 2.363018 TGAGGCGAGAGGGGTGAG 60.363 66.667 0.00 0.00 0.00 3.51
403 404 2.680352 GTGAGGCGAGAGGGGTGA 60.680 66.667 0.00 0.00 0.00 4.02
404 405 3.775654 GGTGAGGCGAGAGGGGTG 61.776 72.222 0.00 0.00 0.00 4.61
407 408 2.943978 AAACGGTGAGGCGAGAGGG 61.944 63.158 0.00 0.00 0.00 4.30
408 409 1.738099 CAAACGGTGAGGCGAGAGG 60.738 63.158 0.00 0.00 0.00 3.69
409 410 0.319555 TTCAAACGGTGAGGCGAGAG 60.320 55.000 0.00 0.00 37.61 3.20
410 411 0.105224 TTTCAAACGGTGAGGCGAGA 59.895 50.000 0.00 0.00 37.61 4.04
411 412 0.234884 GTTTCAAACGGTGAGGCGAG 59.765 55.000 0.00 0.00 37.61 5.03
412 413 0.462225 TGTTTCAAACGGTGAGGCGA 60.462 50.000 0.00 0.00 37.61 5.54
413 414 0.591170 ATGTTTCAAACGGTGAGGCG 59.409 50.000 0.00 0.00 37.61 5.52
414 415 2.223711 ACAATGTTTCAAACGGTGAGGC 60.224 45.455 9.40 0.00 37.61 4.70
415 416 3.708563 ACAATGTTTCAAACGGTGAGG 57.291 42.857 9.40 0.00 37.61 3.86
416 417 4.499040 GTCAACAATGTTTCAAACGGTGAG 59.501 41.667 9.40 3.19 37.61 3.51
417 418 4.416620 GTCAACAATGTTTCAAACGGTGA 58.583 39.130 9.40 0.90 0.00 4.02
418 419 3.239483 CGTCAACAATGTTTCAAACGGTG 59.761 43.478 0.00 0.00 0.00 4.94
419 420 3.127203 TCGTCAACAATGTTTCAAACGGT 59.873 39.130 15.25 0.00 0.00 4.83
420 421 3.686128 TCGTCAACAATGTTTCAAACGG 58.314 40.909 15.25 0.00 0.00 4.44
421 422 5.864830 ATTCGTCAACAATGTTTCAAACG 57.135 34.783 0.00 4.98 0.00 3.60
422 423 8.587950 TGTAAATTCGTCAACAATGTTTCAAAC 58.412 29.630 0.00 0.00 0.00 2.93
423 424 8.587950 GTGTAAATTCGTCAACAATGTTTCAAA 58.412 29.630 0.00 0.00 0.00 2.69
424 425 7.971168 AGTGTAAATTCGTCAACAATGTTTCAA 59.029 29.630 0.00 0.00 0.00 2.69
425 426 7.476667 AGTGTAAATTCGTCAACAATGTTTCA 58.523 30.769 0.00 0.00 0.00 2.69
426 427 7.908193 AGTGTAAATTCGTCAACAATGTTTC 57.092 32.000 0.00 0.00 0.00 2.78
427 428 8.591312 CAAAGTGTAAATTCGTCAACAATGTTT 58.409 29.630 0.00 0.00 0.00 2.83
428 429 7.221838 CCAAAGTGTAAATTCGTCAACAATGTT 59.778 33.333 0.00 0.00 0.00 2.71
429 430 6.695278 CCAAAGTGTAAATTCGTCAACAATGT 59.305 34.615 0.00 0.00 0.00 2.71
430 431 6.915300 TCCAAAGTGTAAATTCGTCAACAATG 59.085 34.615 0.00 0.00 0.00 2.82
431 432 6.915843 GTCCAAAGTGTAAATTCGTCAACAAT 59.084 34.615 0.00 0.00 0.00 2.71
432 433 6.094325 AGTCCAAAGTGTAAATTCGTCAACAA 59.906 34.615 0.00 0.00 0.00 2.83
433 434 5.587043 AGTCCAAAGTGTAAATTCGTCAACA 59.413 36.000 0.00 0.00 0.00 3.33
434 435 6.056428 AGTCCAAAGTGTAAATTCGTCAAC 57.944 37.500 0.00 0.00 0.00 3.18
435 436 6.094325 ACAAGTCCAAAGTGTAAATTCGTCAA 59.906 34.615 0.00 0.00 0.00 3.18
436 437 5.587043 ACAAGTCCAAAGTGTAAATTCGTCA 59.413 36.000 0.00 0.00 0.00 4.35
437 438 6.056428 ACAAGTCCAAAGTGTAAATTCGTC 57.944 37.500 0.00 0.00 0.00 4.20
438 439 6.987992 TCTACAAGTCCAAAGTGTAAATTCGT 59.012 34.615 0.00 0.00 0.00 3.85
439 440 7.360101 CCTCTACAAGTCCAAAGTGTAAATTCG 60.360 40.741 0.00 0.00 0.00 3.34
440 441 7.444487 ACCTCTACAAGTCCAAAGTGTAAATTC 59.556 37.037 0.00 0.00 0.00 2.17
441 442 7.287810 ACCTCTACAAGTCCAAAGTGTAAATT 58.712 34.615 0.00 0.00 0.00 1.82
442 443 6.838382 ACCTCTACAAGTCCAAAGTGTAAAT 58.162 36.000 0.00 0.00 0.00 1.40
443 444 6.243216 ACCTCTACAAGTCCAAAGTGTAAA 57.757 37.500 0.00 0.00 0.00 2.01
444 445 5.881923 ACCTCTACAAGTCCAAAGTGTAA 57.118 39.130 0.00 0.00 0.00 2.41
445 446 5.881923 AACCTCTACAAGTCCAAAGTGTA 57.118 39.130 0.00 0.00 0.00 2.90
446 447 4.772886 AACCTCTACAAGTCCAAAGTGT 57.227 40.909 0.00 0.00 0.00 3.55
447 448 5.588648 TGAAAACCTCTACAAGTCCAAAGTG 59.411 40.000 0.00 0.00 0.00 3.16
448 449 5.751586 TGAAAACCTCTACAAGTCCAAAGT 58.248 37.500 0.00 0.00 0.00 2.66
449 450 6.055588 TCTGAAAACCTCTACAAGTCCAAAG 58.944 40.000 0.00 0.00 0.00 2.77
450 451 5.996644 TCTGAAAACCTCTACAAGTCCAAA 58.003 37.500 0.00 0.00 0.00 3.28
451 452 5.623956 TCTGAAAACCTCTACAAGTCCAA 57.376 39.130 0.00 0.00 0.00 3.53
452 453 5.365619 GTTCTGAAAACCTCTACAAGTCCA 58.634 41.667 0.00 0.00 0.00 4.02
453 454 4.755629 GGTTCTGAAAACCTCTACAAGTCC 59.244 45.833 0.00 0.00 37.34 3.85
454 455 5.926214 GGTTCTGAAAACCTCTACAAGTC 57.074 43.478 0.00 0.00 37.34 3.01
464 465 5.012871 ACCCTTAGACTAGGTTCTGAAAACC 59.987 44.000 0.00 0.00 40.58 3.27
465 466 6.111669 ACCCTTAGACTAGGTTCTGAAAAC 57.888 41.667 0.00 0.00 33.17 2.43
466 467 6.783977 TGTACCCTTAGACTAGGTTCTGAAAA 59.216 38.462 0.00 0.00 35.02 2.29
467 468 6.210185 GTGTACCCTTAGACTAGGTTCTGAAA 59.790 42.308 0.00 0.00 35.02 2.69
468 469 5.713861 GTGTACCCTTAGACTAGGTTCTGAA 59.286 44.000 0.00 0.00 35.02 3.02
469 470 5.259632 GTGTACCCTTAGACTAGGTTCTGA 58.740 45.833 0.00 0.00 35.02 3.27
470 471 4.096081 CGTGTACCCTTAGACTAGGTTCTG 59.904 50.000 0.00 0.00 35.02 3.02
471 472 4.263683 ACGTGTACCCTTAGACTAGGTTCT 60.264 45.833 0.00 0.00 35.02 3.01
472 473 4.013050 ACGTGTACCCTTAGACTAGGTTC 58.987 47.826 0.00 0.00 35.02 3.62
473 474 4.039603 ACGTGTACCCTTAGACTAGGTT 57.960 45.455 0.00 0.00 35.02 3.50
474 475 3.728385 ACGTGTACCCTTAGACTAGGT 57.272 47.619 0.00 0.00 37.69 3.08
475 476 5.506982 GCATAACGTGTACCCTTAGACTAGG 60.507 48.000 0.00 0.00 34.92 3.02
476 477 5.506982 GGCATAACGTGTACCCTTAGACTAG 60.507 48.000 0.00 0.00 0.00 2.57
477 478 4.339247 GGCATAACGTGTACCCTTAGACTA 59.661 45.833 0.00 0.00 0.00 2.59
478 479 3.131755 GGCATAACGTGTACCCTTAGACT 59.868 47.826 0.00 0.00 0.00 3.24
479 480 3.131755 AGGCATAACGTGTACCCTTAGAC 59.868 47.826 0.00 0.00 0.00 2.59
480 481 3.368248 AGGCATAACGTGTACCCTTAGA 58.632 45.455 0.00 0.00 0.00 2.10
481 482 3.814005 AGGCATAACGTGTACCCTTAG 57.186 47.619 0.00 0.00 0.00 2.18
482 483 3.369681 CCAAGGCATAACGTGTACCCTTA 60.370 47.826 9.58 0.00 29.83 2.69
483 484 2.617021 CCAAGGCATAACGTGTACCCTT 60.617 50.000 0.00 0.00 30.66 3.95
484 485 1.065709 CCAAGGCATAACGTGTACCCT 60.066 52.381 0.00 0.00 0.00 4.34
485 486 1.339342 ACCAAGGCATAACGTGTACCC 60.339 52.381 0.00 0.00 0.00 3.69
486 487 1.735571 CACCAAGGCATAACGTGTACC 59.264 52.381 0.00 0.00 0.00 3.34
487 488 2.690786 TCACCAAGGCATAACGTGTAC 58.309 47.619 0.00 0.00 0.00 2.90
488 489 3.404224 TTCACCAAGGCATAACGTGTA 57.596 42.857 0.00 0.00 0.00 2.90
489 490 2.264005 TTCACCAAGGCATAACGTGT 57.736 45.000 0.00 0.00 0.00 4.49
490 491 3.064820 GGTATTCACCAAGGCATAACGTG 59.935 47.826 0.00 0.00 45.04 4.49
491 492 3.275999 GGTATTCACCAAGGCATAACGT 58.724 45.455 0.00 0.00 45.04 3.99
492 493 3.963383 GGTATTCACCAAGGCATAACG 57.037 47.619 0.00 0.00 45.04 3.18
503 504 0.030908 CGCGAGGAGAGGTATTCACC 59.969 60.000 0.00 0.00 46.19 4.02
504 505 0.595310 GCGCGAGGAGAGGTATTCAC 60.595 60.000 12.10 0.00 0.00 3.18
505 506 1.035385 TGCGCGAGGAGAGGTATTCA 61.035 55.000 12.10 0.00 0.00 2.57
506 507 0.102481 TTGCGCGAGGAGAGGTATTC 59.898 55.000 12.10 0.00 0.00 1.75
507 508 0.179108 GTTGCGCGAGGAGAGGTATT 60.179 55.000 12.10 0.00 0.00 1.89
508 509 1.320344 TGTTGCGCGAGGAGAGGTAT 61.320 55.000 12.10 0.00 0.00 2.73
509 510 1.934220 CTGTTGCGCGAGGAGAGGTA 61.934 60.000 12.10 0.00 0.00 3.08
510 511 3.288308 CTGTTGCGCGAGGAGAGGT 62.288 63.158 12.10 0.00 0.00 3.85
582 583 0.810031 ACGAATGGCGCAGGATACAC 60.810 55.000 10.83 0.00 46.04 2.90
593 594 2.872858 GAGAATACCCAAGACGAATGGC 59.127 50.000 0.00 0.00 36.58 4.40
594 595 4.408182 AGAGAATACCCAAGACGAATGG 57.592 45.455 0.00 0.00 37.71 3.16
595 596 5.065218 CCAAAGAGAATACCCAAGACGAATG 59.935 44.000 0.00 0.00 0.00 2.67
641 642 2.026641 CATGGCCCATCTAAACACTGG 58.973 52.381 0.00 0.00 0.00 4.00
644 645 2.164219 CACACATGGCCCATCTAAACAC 59.836 50.000 0.00 0.00 0.00 3.32
645 646 2.445427 CACACATGGCCCATCTAAACA 58.555 47.619 0.00 0.00 0.00 2.83
658 659 2.192861 ACGGCCAACACCACACATG 61.193 57.895 2.24 0.00 0.00 3.21
659 660 2.192861 CACGGCCAACACCACACAT 61.193 57.895 2.24 0.00 0.00 3.21
693 696 1.463034 CGAGCACGCATTCAGTTTCTG 60.463 52.381 0.00 0.00 0.00 3.02
706 709 1.417592 GTCACATCAAGCGAGCACG 59.582 57.895 0.00 0.00 42.93 5.34
728 731 9.173021 TGATAACGACCACTTTTATTGATTCAT 57.827 29.630 0.00 0.00 0.00 2.57
831 837 1.039856 GGACCTGTGTTTGGTGCATT 58.960 50.000 0.00 0.00 43.95 3.56
857 863 3.895102 TTTTGCGCGTGATGGCAGC 62.895 57.895 8.43 0.00 40.75 5.25
870 876 1.299850 GCGGTTCCTGGTGTTTTGC 60.300 57.895 0.00 0.00 0.00 3.68
918 940 1.471684 CTACTAGGACGGTGTGTGGTC 59.528 57.143 0.00 0.00 0.00 4.02
927 949 4.778534 TCAACTTTGACTACTAGGACGG 57.221 45.455 0.00 0.00 31.01 4.79
951 973 1.282570 GTGCGGATGTGTGTGTTGG 59.717 57.895 0.00 0.00 0.00 3.77
963 985 3.418913 CGGATTTGTGCGTGCGGA 61.419 61.111 0.00 0.00 0.00 5.54
980 1002 1.495951 GATCGGTTGGTTCGTGCAC 59.504 57.895 6.82 6.82 0.00 4.57
1050 1072 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
1053 1075 1.454847 CGACAGGAGGAGGAGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
1056 1078 3.151022 GCCGACAGGAGGAGGAGG 61.151 72.222 0.00 0.00 41.02 4.30
1130 1152 1.014044 GGCGTCTGCTTCGATTGTCA 61.014 55.000 0.00 0.00 42.25 3.58
1134 1156 1.805945 GTCGGCGTCTGCTTCGATT 60.806 57.895 6.85 0.00 42.25 3.34
1185 1207 3.234630 CTTCCTCGCGGTGTTCCCA 62.235 63.158 6.13 0.00 0.00 4.37
1192 1217 4.379243 CAGCACCTTCCTCGCGGT 62.379 66.667 6.13 0.00 0.00 5.68
1224 1249 1.019805 ACGTCGACTCGCAGATCTGA 61.020 55.000 27.04 5.37 33.89 3.27
1287 1312 2.743538 TTGCAGCGCTGGTAGCAG 60.744 61.111 36.47 17.67 42.58 4.24
1314 1339 0.466543 ACCTACACCAGTCGTTGCAA 59.533 50.000 0.00 0.00 0.00 4.08
1343 1368 1.291877 ATTCTTGTGCCGTGACTCGC 61.292 55.000 0.00 0.00 38.35 5.03
1348 1373 0.955428 GCTCCATTCTTGTGCCGTGA 60.955 55.000 0.00 0.00 0.00 4.35
1349 1374 1.503542 GCTCCATTCTTGTGCCGTG 59.496 57.895 0.00 0.00 0.00 4.94
1351 1376 3.190878 GGCTCCATTCTTGTGCCG 58.809 61.111 0.00 0.00 33.12 5.69
1352 1377 3.056313 GCGGCTCCATTCTTGTGCC 62.056 63.158 0.00 0.00 37.27 5.01
1360 1402 0.886490 GATCCATTCGCGGCTCCATT 60.886 55.000 6.13 0.00 0.00 3.16
1370 1412 2.213499 GCTGTACTTGGGATCCATTCG 58.787 52.381 15.23 0.93 31.53 3.34
1528 1573 2.667137 GCGCTGAGCTCGAGTTTATAT 58.333 47.619 15.13 0.00 44.04 0.86
1546 1591 3.122288 CGTCAACGTTTGTATTGTTTGCG 60.122 43.478 0.00 0.00 34.11 4.85
1550 1595 3.310227 TGAGCGTCAACGTTTGTATTGTT 59.690 39.130 0.00 0.00 42.22 2.83
1567 1612 0.029167 TGTGCATGTGTTTGTGAGCG 59.971 50.000 0.00 0.00 0.00 5.03
1628 1680 6.631971 TGTAAATGAAACTGTGCTCAATGA 57.368 33.333 0.00 0.00 0.00 2.57
1723 2192 1.268625 TGTAGGATATAGCACCGCACG 59.731 52.381 0.00 0.00 0.00 5.34
1748 2217 9.581289 TGAATTTTCTTGTTCTATAGTTTCCCA 57.419 29.630 0.00 0.00 0.00 4.37
1798 2273 7.559590 ACATAGATTAGCTCATTTGTTGGTC 57.440 36.000 0.00 0.00 0.00 4.02
1904 2394 7.659186 ACTTCCGGTGAACTATGATTATAGAC 58.341 38.462 11.24 5.74 38.88 2.59
1906 2396 8.573885 TGTACTTCCGGTGAACTATGATTATAG 58.426 37.037 0.00 3.05 41.68 1.31
1910 2400 5.670792 TGTACTTCCGGTGAACTATGATT 57.329 39.130 0.00 0.00 0.00 2.57
1917 2407 2.032290 GTGCTTTGTACTTCCGGTGAAC 60.032 50.000 0.00 0.00 0.00 3.18
1955 2445 5.278315 CGGTGGTCTCGATATCTTCATGTAA 60.278 44.000 0.34 0.00 0.00 2.41
1957 2447 3.004839 CGGTGGTCTCGATATCTTCATGT 59.995 47.826 0.34 0.00 0.00 3.21
1958 2448 3.253432 TCGGTGGTCTCGATATCTTCATG 59.747 47.826 0.34 0.00 0.00 3.07
1959 2449 3.487372 TCGGTGGTCTCGATATCTTCAT 58.513 45.455 0.34 0.00 0.00 2.57
1961 2451 3.630101 GTTCGGTGGTCTCGATATCTTC 58.370 50.000 0.34 0.00 36.49 2.87
1968 2459 0.675837 AGATCGTTCGGTGGTCTCGA 60.676 55.000 0.00 0.00 35.14 4.04
2007 2498 7.390162 GGAATCCTCTAAATCTAATGAGCCTTG 59.610 40.741 0.00 0.00 0.00 3.61
2156 3724 9.642327 CATTGAGATATCTTCATGAGGTCTTAG 57.358 37.037 15.42 0.00 0.00 2.18
2181 3749 3.737559 ATGCCATGTTCCCTTAAGTCA 57.262 42.857 0.97 0.00 0.00 3.41
2184 3752 5.603170 ATTGAATGCCATGTTCCCTTAAG 57.397 39.130 0.00 0.00 0.00 1.85
2186 3754 5.248020 ACAAATTGAATGCCATGTTCCCTTA 59.752 36.000 0.00 0.00 0.00 2.69
2190 3758 7.614124 AATTACAAATTGAATGCCATGTTCC 57.386 32.000 0.00 0.00 0.00 3.62
2271 3840 6.722590 TGTTATGTCACTTGACTAGGACCTAA 59.277 38.462 10.63 0.00 44.99 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.