Multiple sequence alignment - TraesCS1A01G422900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G422900 chr1A 100.000 4025 0 0 1 4025 578209509 578205485 0.000000e+00 7433.0
1 TraesCS1A01G422900 chr1A 82.723 1366 190 25 1247 2571 577985496 577986856 0.000000e+00 1173.0
2 TraesCS1A01G422900 chr1A 93.333 75 5 0 72 146 534025153 534025079 1.180000e-20 111.0
3 TraesCS1A01G422900 chr1D 92.237 3246 175 31 148 3359 481502735 481499533 0.000000e+00 4527.0
4 TraesCS1A01G422900 chr1D 83.772 1368 184 21 1230 2566 481453726 481452366 0.000000e+00 1262.0
5 TraesCS1A01G422900 chr1D 82.749 1368 186 31 1247 2571 481550717 481552077 0.000000e+00 1173.0
6 TraesCS1A01G422900 chr1D 82.284 683 109 9 2348 3024 481488915 481488239 7.500000e-162 580.0
7 TraesCS1A01G422900 chr1D 85.809 451 45 11 2648 3081 481452363 481451915 1.020000e-125 460.0
8 TraesCS1A01G422900 chr1D 80.303 198 36 3 1631 1827 481489130 481488935 3.240000e-31 147.0
9 TraesCS1A01G422900 chr1D 86.822 129 14 3 15 142 378722139 378722265 1.510000e-29 141.0
10 TraesCS1A01G422900 chr1D 86.486 111 15 0 1325 1435 481489241 481489131 5.460000e-24 122.0
11 TraesCS1A01G422900 chr1D 91.228 57 1 3 3114 3166 481488180 481488124 1.550000e-09 75.0
12 TraesCS1A01G422900 chr1B 95.455 1210 41 4 1134 2333 670142727 670143932 0.000000e+00 1917.0
13 TraesCS1A01G422900 chr1B 89.827 1042 62 13 145 1149 670141582 670142616 0.000000e+00 1297.0
14 TraesCS1A01G422900 chr1B 82.439 1361 193 32 1243 2571 670159096 670160442 0.000000e+00 1147.0
15 TraesCS1A01G422900 chr1B 82.091 1368 195 30 1247 2571 669922764 669924124 0.000000e+00 1123.0
16 TraesCS1A01G422900 chr1B 92.414 580 36 5 2329 2907 670149466 670150038 0.000000e+00 821.0
17 TraesCS1A01G422900 chr1B 97.347 377 10 0 3649 4025 623855681 623856057 3.390000e-180 641.0
18 TraesCS1A01G422900 chr1B 91.379 290 20 2 3355 3642 335738477 335738763 3.770000e-105 392.0
19 TraesCS1A01G422900 chr1B 83.002 453 47 10 2647 3072 670160439 670160888 2.270000e-102 383.0
20 TraesCS1A01G422900 chr1B 87.004 277 17 10 2906 3167 670150362 670150634 1.090000e-75 294.0
21 TraesCS1A01G422900 chr1B 77.863 131 10 11 367 485 670158368 670158491 3.360000e-06 63.9
22 TraesCS1A01G422900 chr5A 97.090 378 11 0 3648 4025 703111690 703112067 4.390000e-179 638.0
23 TraesCS1A01G422900 chr5A 93.668 379 14 1 3647 4025 515129719 515130087 3.510000e-155 558.0
24 TraesCS1A01G422900 chr6B 95.337 386 18 0 3640 4025 248328430 248328045 7.390000e-172 614.0
25 TraesCS1A01G422900 chr3A 92.388 289 18 1 3360 3648 743698544 743698260 3.740000e-110 409.0
26 TraesCS1A01G422900 chr3A 79.188 197 33 8 3165 3358 388093317 388093508 3.260000e-26 130.0
27 TraesCS1A01G422900 chr3B 91.753 291 21 1 3358 3648 732271628 732271341 6.270000e-108 401.0
28 TraesCS1A01G422900 chr3B 91.379 290 22 1 3359 3648 737665172 737664886 1.050000e-105 394.0
29 TraesCS1A01G422900 chr5B 91.696 289 20 2 3360 3648 522850827 522851111 8.110000e-107 398.0
30 TraesCS1A01G422900 chr5B 91.409 291 21 2 3358 3648 522853769 522854055 2.920000e-106 396.0
31 TraesCS1A01G422900 chr5B 87.413 143 17 1 1 142 622463062 622463204 3.220000e-36 163.0
32 TraesCS1A01G422900 chr2B 91.667 288 21 2 3358 3645 26321255 26320971 2.920000e-106 396.0
33 TraesCS1A01G422900 chr2B 91.409 291 22 2 3358 3648 335625552 335625839 2.920000e-106 396.0
34 TraesCS1A01G422900 chr2B 79.328 387 66 11 2196 2569 245130060 245130445 3.990000e-65 259.0
35 TraesCS1A01G422900 chr2B 80.447 179 35 0 2663 2841 245130548 245130726 1.950000e-28 137.0
36 TraesCS1A01G422900 chr2B 93.333 75 5 0 72 146 25577028 25577102 1.180000e-20 111.0
37 TraesCS1A01G422900 chr2B 91.463 82 6 1 72 153 796904443 796904523 1.180000e-20 111.0
38 TraesCS1A01G422900 chr7A 90.816 294 23 2 3356 3648 79698054 79698344 1.360000e-104 390.0
39 TraesCS1A01G422900 chr7A 83.051 177 27 3 3166 3340 64487569 64487394 1.500000e-34 158.0
40 TraesCS1A01G422900 chr7A 85.417 96 14 0 2 97 14728731 14728636 2.560000e-17 100.0
41 TraesCS1A01G422900 chr4D 92.248 129 5 1 8 136 471966176 471966299 1.150000e-40 178.0
42 TraesCS1A01G422900 chr5D 88.811 143 15 1 1 142 500941313 500941455 1.490000e-39 174.0
43 TraesCS1A01G422900 chr7B 89.216 102 11 0 40 141 579674394 579674293 1.170000e-25 128.0
44 TraesCS1A01G422900 chr7D 86.916 107 6 7 37 138 54793285 54793388 3.290000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G422900 chr1A 578205485 578209509 4024 True 7433.0 7433 100.000000 1 4025 1 chr1A.!!$R2 4024
1 TraesCS1A01G422900 chr1A 577985496 577986856 1360 False 1173.0 1173 82.723000 1247 2571 1 chr1A.!!$F1 1324
2 TraesCS1A01G422900 chr1D 481499533 481502735 3202 True 4527.0 4527 92.237000 148 3359 1 chr1D.!!$R1 3211
3 TraesCS1A01G422900 chr1D 481550717 481552077 1360 False 1173.0 1173 82.749000 1247 2571 1 chr1D.!!$F2 1324
4 TraesCS1A01G422900 chr1D 481451915 481453726 1811 True 861.0 1262 84.790500 1230 3081 2 chr1D.!!$R2 1851
5 TraesCS1A01G422900 chr1D 481488124 481489241 1117 True 231.0 580 85.075250 1325 3166 4 chr1D.!!$R3 1841
6 TraesCS1A01G422900 chr1B 670141582 670143932 2350 False 1607.0 1917 92.641000 145 2333 2 chr1B.!!$F4 2188
7 TraesCS1A01G422900 chr1B 669922764 669924124 1360 False 1123.0 1123 82.091000 1247 2571 1 chr1B.!!$F3 1324
8 TraesCS1A01G422900 chr1B 670149466 670150634 1168 False 557.5 821 89.709000 2329 3167 2 chr1B.!!$F5 838
9 TraesCS1A01G422900 chr1B 670158368 670160888 2520 False 531.3 1147 81.101333 367 3072 3 chr1B.!!$F6 2705
10 TraesCS1A01G422900 chr5B 522850827 522854055 3228 False 397.0 398 91.552500 3358 3648 2 chr5B.!!$F2 290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 810 0.038744 CCAAGCATGGGTCTTCTGGT 59.961 55.0 0.0 0.0 43.51 4.00 F
844 970 0.380378 GCCGTCACTTGCACAAAGAA 59.620 50.0 0.0 0.0 39.38 2.52 F
1808 2092 0.801067 CGTACCTTGCGTACCTGAGC 60.801 60.0 0.0 0.0 43.93 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 2866 0.827089 CCTGGTTGACAATGGTGGCA 60.827 55.0 0.00 0.0 42.77 4.92 R
2536 2868 0.827089 TGCCTGGTTGACAATGGTGG 60.827 55.0 0.00 0.0 0.00 4.61 R
3469 4184 0.033011 AGGAGCGTCCATAGTCAGGT 60.033 55.0 6.78 0.0 39.61 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.603237 TTAATGATGATGTAAGGCAACGAG 57.397 37.500 0.00 0.00 46.39 4.18
24 25 2.905075 TGATGATGTAAGGCAACGAGG 58.095 47.619 0.00 0.00 46.39 4.63
25 26 1.599542 GATGATGTAAGGCAACGAGGC 59.400 52.381 0.00 0.00 46.39 4.70
35 36 1.913317 GCAACGAGGCCAAAATCATC 58.087 50.000 5.01 0.00 0.00 2.92
36 37 1.202114 GCAACGAGGCCAAAATCATCA 59.798 47.619 5.01 0.00 0.00 3.07
37 38 2.352617 GCAACGAGGCCAAAATCATCAA 60.353 45.455 5.01 0.00 0.00 2.57
38 39 3.244976 CAACGAGGCCAAAATCATCAAC 58.755 45.455 5.01 0.00 0.00 3.18
39 40 2.513753 ACGAGGCCAAAATCATCAACA 58.486 42.857 5.01 0.00 0.00 3.33
40 41 2.890311 ACGAGGCCAAAATCATCAACAA 59.110 40.909 5.01 0.00 0.00 2.83
41 42 3.320541 ACGAGGCCAAAATCATCAACAAA 59.679 39.130 5.01 0.00 0.00 2.83
42 43 3.922240 CGAGGCCAAAATCATCAACAAAG 59.078 43.478 5.01 0.00 0.00 2.77
43 44 4.321156 CGAGGCCAAAATCATCAACAAAGA 60.321 41.667 5.01 0.00 0.00 2.52
44 45 5.143376 AGGCCAAAATCATCAACAAAGAG 57.857 39.130 5.01 0.00 0.00 2.85
45 46 4.834496 AGGCCAAAATCATCAACAAAGAGA 59.166 37.500 5.01 0.00 0.00 3.10
46 47 5.047519 AGGCCAAAATCATCAACAAAGAGAG 60.048 40.000 5.01 0.00 0.00 3.20
47 48 5.279156 GGCCAAAATCATCAACAAAGAGAGT 60.279 40.000 0.00 0.00 0.00 3.24
48 49 6.071952 GGCCAAAATCATCAACAAAGAGAGTA 60.072 38.462 0.00 0.00 0.00 2.59
49 50 6.803807 GCCAAAATCATCAACAAAGAGAGTAC 59.196 38.462 0.00 0.00 0.00 2.73
50 51 7.522073 GCCAAAATCATCAACAAAGAGAGTACA 60.522 37.037 0.00 0.00 0.00 2.90
51 52 8.352201 CCAAAATCATCAACAAAGAGAGTACAA 58.648 33.333 0.00 0.00 0.00 2.41
52 53 9.390795 CAAAATCATCAACAAAGAGAGTACAAG 57.609 33.333 0.00 0.00 0.00 3.16
53 54 8.908786 AAATCATCAACAAAGAGAGTACAAGA 57.091 30.769 0.00 0.00 0.00 3.02
54 55 7.897575 ATCATCAACAAAGAGAGTACAAGAC 57.102 36.000 0.00 0.00 0.00 3.01
55 56 6.816136 TCATCAACAAAGAGAGTACAAGACA 58.184 36.000 0.00 0.00 0.00 3.41
56 57 7.445121 TCATCAACAAAGAGAGTACAAGACAT 58.555 34.615 0.00 0.00 0.00 3.06
57 58 8.585018 TCATCAACAAAGAGAGTACAAGACATA 58.415 33.333 0.00 0.00 0.00 2.29
58 59 9.208022 CATCAACAAAGAGAGTACAAGACATAA 57.792 33.333 0.00 0.00 0.00 1.90
59 60 9.778741 ATCAACAAAGAGAGTACAAGACATAAA 57.221 29.630 0.00 0.00 0.00 1.40
60 61 9.778741 TCAACAAAGAGAGTACAAGACATAAAT 57.221 29.630 0.00 0.00 0.00 1.40
66 67 9.654663 AAGAGAGTACAAGACATAAATAACCAC 57.345 33.333 0.00 0.00 0.00 4.16
67 68 7.974501 AGAGAGTACAAGACATAAATAACCACG 59.025 37.037 0.00 0.00 0.00 4.94
68 69 7.833786 AGAGTACAAGACATAAATAACCACGA 58.166 34.615 0.00 0.00 0.00 4.35
69 70 8.475639 AGAGTACAAGACATAAATAACCACGAT 58.524 33.333 0.00 0.00 0.00 3.73
70 71 9.740239 GAGTACAAGACATAAATAACCACGATA 57.260 33.333 0.00 0.00 0.00 2.92
71 72 9.745880 AGTACAAGACATAAATAACCACGATAG 57.254 33.333 0.00 0.00 46.19 2.08
72 73 9.740239 GTACAAGACATAAATAACCACGATAGA 57.260 33.333 0.00 0.00 41.38 1.98
74 75 9.095065 ACAAGACATAAATAACCACGATAGAAC 57.905 33.333 0.00 0.00 41.38 3.01
75 76 8.548721 CAAGACATAAATAACCACGATAGAACC 58.451 37.037 0.00 0.00 41.38 3.62
76 77 7.788026 AGACATAAATAACCACGATAGAACCA 58.212 34.615 0.00 0.00 41.38 3.67
77 78 8.429641 AGACATAAATAACCACGATAGAACCAT 58.570 33.333 0.00 0.00 41.38 3.55
78 79 8.974060 ACATAAATAACCACGATAGAACCATT 57.026 30.769 0.00 0.00 41.38 3.16
82 83 8.795842 AAATAACCACGATAGAACCATTACAA 57.204 30.769 0.00 0.00 41.38 2.41
83 84 8.433421 AATAACCACGATAGAACCATTACAAG 57.567 34.615 0.00 0.00 41.38 3.16
84 85 5.670792 ACCACGATAGAACCATTACAAGA 57.329 39.130 0.00 0.00 41.38 3.02
85 86 6.235231 ACCACGATAGAACCATTACAAGAT 57.765 37.500 0.00 0.00 41.38 2.40
86 87 7.356089 ACCACGATAGAACCATTACAAGATA 57.644 36.000 0.00 0.00 41.38 1.98
87 88 7.963532 ACCACGATAGAACCATTACAAGATAT 58.036 34.615 0.00 0.00 41.38 1.63
88 89 7.872993 ACCACGATAGAACCATTACAAGATATG 59.127 37.037 0.00 0.00 41.38 1.78
89 90 8.088365 CCACGATAGAACCATTACAAGATATGA 58.912 37.037 0.00 0.00 41.38 2.15
90 91 9.476202 CACGATAGAACCATTACAAGATATGAA 57.524 33.333 0.00 0.00 41.38 2.57
99 100 8.686334 ACCATTACAAGATATGAAATCAACACC 58.314 33.333 0.00 0.00 0.00 4.16
100 101 8.906867 CCATTACAAGATATGAAATCAACACCT 58.093 33.333 0.00 0.00 0.00 4.00
103 104 7.539712 ACAAGATATGAAATCAACACCTACG 57.460 36.000 0.00 0.00 0.00 3.51
104 105 7.327975 ACAAGATATGAAATCAACACCTACGA 58.672 34.615 0.00 0.00 0.00 3.43
105 106 7.277981 ACAAGATATGAAATCAACACCTACGAC 59.722 37.037 0.00 0.00 0.00 4.34
106 107 7.113658 AGATATGAAATCAACACCTACGACT 57.886 36.000 0.00 0.00 0.00 4.18
107 108 8.234136 AGATATGAAATCAACACCTACGACTA 57.766 34.615 0.00 0.00 0.00 2.59
108 109 8.692710 AGATATGAAATCAACACCTACGACTAA 58.307 33.333 0.00 0.00 0.00 2.24
109 110 8.873215 ATATGAAATCAACACCTACGACTAAG 57.127 34.615 0.00 0.00 0.00 2.18
110 111 6.092955 TGAAATCAACACCTACGACTAAGT 57.907 37.500 0.00 0.00 0.00 2.24
111 112 6.154445 TGAAATCAACACCTACGACTAAGTC 58.846 40.000 0.00 0.00 0.00 3.01
123 124 2.517935 GACTAAGTCGACTTCTTCCGC 58.482 52.381 32.86 14.30 37.40 5.54
124 125 1.884579 ACTAAGTCGACTTCTTCCGCA 59.115 47.619 32.86 13.76 37.40 5.69
125 126 2.095161 ACTAAGTCGACTTCTTCCGCAG 60.095 50.000 32.86 23.63 37.40 5.18
126 127 0.667792 AAGTCGACTTCTTCCGCAGC 60.668 55.000 24.93 0.00 0.00 5.25
127 128 1.372997 GTCGACTTCTTCCGCAGCA 60.373 57.895 8.70 0.00 0.00 4.41
128 129 0.944311 GTCGACTTCTTCCGCAGCAA 60.944 55.000 8.70 0.00 0.00 3.91
129 130 0.944311 TCGACTTCTTCCGCAGCAAC 60.944 55.000 0.00 0.00 0.00 4.17
130 131 1.493311 GACTTCTTCCGCAGCAACG 59.507 57.895 0.00 0.00 0.00 4.10
131 132 2.174349 CTTCTTCCGCAGCAACGC 59.826 61.111 0.00 0.00 0.00 4.84
132 133 3.314388 CTTCTTCCGCAGCAACGCC 62.314 63.158 0.00 0.00 0.00 5.68
133 134 3.825160 TTCTTCCGCAGCAACGCCT 62.825 57.895 0.00 0.00 0.00 5.52
134 135 3.357079 CTTCCGCAGCAACGCCTT 61.357 61.111 0.00 0.00 0.00 4.35
135 136 3.314388 CTTCCGCAGCAACGCCTTC 62.314 63.158 0.00 0.00 0.00 3.46
136 137 4.617520 TCCGCAGCAACGCCTTCA 62.618 61.111 0.00 0.00 0.00 3.02
137 138 3.659092 CCGCAGCAACGCCTTCAA 61.659 61.111 0.00 0.00 0.00 2.69
138 139 2.427410 CGCAGCAACGCCTTCAAC 60.427 61.111 0.00 0.00 0.00 3.18
139 140 2.721231 GCAGCAACGCCTTCAACA 59.279 55.556 0.00 0.00 0.00 3.33
140 141 1.065600 GCAGCAACGCCTTCAACAA 59.934 52.632 0.00 0.00 0.00 2.83
141 142 0.936297 GCAGCAACGCCTTCAACAAG 60.936 55.000 0.00 0.00 0.00 3.16
142 143 0.662619 CAGCAACGCCTTCAACAAGA 59.337 50.000 0.00 0.00 0.00 3.02
143 144 1.267806 CAGCAACGCCTTCAACAAGAT 59.732 47.619 0.00 0.00 0.00 2.40
146 147 3.127548 AGCAACGCCTTCAACAAGATATG 59.872 43.478 0.00 0.00 0.00 1.78
242 243 0.819259 GCCAAATGCGCCCTATGAGA 60.819 55.000 4.18 0.00 0.00 3.27
247 248 3.769739 AATGCGCCCTATGAGACAATA 57.230 42.857 4.18 0.00 0.00 1.90
248 249 3.988976 ATGCGCCCTATGAGACAATAT 57.011 42.857 4.18 0.00 0.00 1.28
253 254 2.289694 GCCCTATGAGACAATATGGCGT 60.290 50.000 0.00 0.00 35.14 5.68
255 256 4.562757 GCCCTATGAGACAATATGGCGTAA 60.563 45.833 0.00 0.00 35.14 3.18
357 358 1.019278 CAACTAGGCGCACGGAACAT 61.019 55.000 10.83 0.00 0.00 2.71
360 361 0.102481 CTAGGCGCACGGAACATACT 59.898 55.000 10.83 0.00 0.00 2.12
361 362 1.335810 CTAGGCGCACGGAACATACTA 59.664 52.381 10.83 0.00 0.00 1.82
362 363 0.179119 AGGCGCACGGAACATACTAC 60.179 55.000 10.83 0.00 0.00 2.73
433 439 2.603473 ACAGCCCACAGGTAGCGA 60.603 61.111 0.00 0.00 34.57 4.93
434 440 1.990060 ACAGCCCACAGGTAGCGAT 60.990 57.895 0.00 0.00 34.57 4.58
526 566 5.106908 GCTTTTTCCAGTGACAGTCATCTAC 60.107 44.000 6.51 0.00 0.00 2.59
573 615 1.659098 CGTGAGCGGTGTAATTCTTCC 59.341 52.381 0.00 0.00 0.00 3.46
703 810 0.038744 CCAAGCATGGGTCTTCTGGT 59.961 55.000 0.00 0.00 43.51 4.00
844 970 0.380378 GCCGTCACTTGCACAAAGAA 59.620 50.000 0.00 0.00 39.38 2.52
985 1122 2.685897 GCTAGCTAGCTCCGCTATACAT 59.314 50.000 33.71 0.00 45.62 2.29
1106 1255 4.167268 GGAGACGTTATCCTGATTATCGC 58.833 47.826 12.26 0.00 33.77 4.58
1157 1432 9.520204 GCTGTAGGTGTACGATATAACTTTTTA 57.480 33.333 0.00 0.00 30.95 1.52
1224 1501 9.478768 TGTACGACTTAATTGTGATGTTTCTTA 57.521 29.630 0.00 0.00 0.00 2.10
1225 1502 9.737025 GTACGACTTAATTGTGATGTTTCTTAC 57.263 33.333 0.00 0.00 0.00 2.34
1240 1517 5.406175 TGTTTCTTACTATTGTACACGCACC 59.594 40.000 0.00 0.00 0.00 5.01
1305 1586 1.229082 ACTAACCTGCCTGACCCGA 60.229 57.895 0.00 0.00 0.00 5.14
1364 1645 2.509166 TGGTGAGGATCTACGACACT 57.491 50.000 0.00 0.00 34.92 3.55
1520 1804 3.499737 CCGGCCACGCAGATCAAC 61.500 66.667 2.24 0.00 39.22 3.18
1727 2011 3.070060 GACATCGCGTTGTCGGTC 58.930 61.111 28.53 11.76 36.93 4.79
1808 2092 0.801067 CGTACCTTGCGTACCTGAGC 60.801 60.000 0.00 0.00 43.93 4.26
2075 2362 4.892965 ACAGCCAACGCCCAAGCA 62.893 61.111 0.00 0.00 39.83 3.91
2285 2578 1.078426 GAACCAGCAGCCCGTGTAT 60.078 57.895 0.00 0.00 0.00 2.29
2297 2596 2.929592 GCCCGTGTATCAAGTCGACTTT 60.930 50.000 27.79 17.09 33.11 2.66
2503 2835 1.822990 CTACTACCAGAAGAACGGCCA 59.177 52.381 2.24 0.00 0.00 5.36
2534 2866 1.595382 GTGCGACTTCAGTGGTGCT 60.595 57.895 0.00 0.00 0.00 4.40
2536 2868 2.959357 GCGACTTCAGTGGTGCTGC 61.959 63.158 0.00 0.00 44.66 5.25
2579 2922 3.334583 TCAGGTGAGTGCTTGAATACC 57.665 47.619 0.00 0.00 0.00 2.73
2585 2928 2.000447 GAGTGCTTGAATACCACGACC 59.000 52.381 0.00 0.00 34.79 4.79
2646 2989 2.824041 ATTGCTTGCGTAGGCCGG 60.824 61.111 4.95 0.00 38.85 6.13
2918 3597 6.860023 CCAAGTAAGTTCTCTGCTTTGAATTG 59.140 38.462 0.00 0.00 0.00 2.32
2961 3642 7.754069 AACAAAATGTATGTGTCTGTTTGTG 57.246 32.000 0.00 0.00 37.67 3.33
3092 3803 7.724305 TTAAGCAATAATCCCGACAGATTAC 57.276 36.000 5.12 0.00 40.57 1.89
3171 3886 4.202461 TGGTTTTCATCAGGTGCTTAGAGT 60.202 41.667 0.00 0.00 0.00 3.24
3195 3910 8.656806 AGTAAGTACAATAATGGGCTTATAGCA 58.343 33.333 0.00 0.00 44.75 3.49
3203 3918 2.607631 GGGCTTATAGCACGGTTACA 57.392 50.000 0.67 0.00 44.75 2.41
3205 3920 3.473625 GGGCTTATAGCACGGTTACATT 58.526 45.455 0.67 0.00 44.75 2.71
3206 3921 4.634199 GGGCTTATAGCACGGTTACATTA 58.366 43.478 0.67 0.00 44.75 1.90
3226 3941 7.370383 ACATTACACTTTTGCCTATGTGAAAG 58.630 34.615 0.00 0.00 35.72 2.62
3227 3942 7.230510 ACATTACACTTTTGCCTATGTGAAAGA 59.769 33.333 0.00 0.00 34.20 2.52
3249 3964 7.009179 AGAGAGTGATGTGGAAAAATAGTGA 57.991 36.000 0.00 0.00 0.00 3.41
3277 3992 3.618351 ACTCTCGTACAAAGCCTAGCTA 58.382 45.455 0.00 0.00 38.25 3.32
3335 4050 7.546250 AAAGAAAGAGATACAGAGAAGGTGA 57.454 36.000 0.00 0.00 0.00 4.02
3336 4051 7.546250 AAGAAAGAGATACAGAGAAGGTGAA 57.454 36.000 0.00 0.00 0.00 3.18
3380 4095 3.602483 TGTTAGAATAAACCCGAGGCAC 58.398 45.455 0.00 0.00 0.00 5.01
3411 4126 6.879276 ATCATTCGAGAATCAAGCAATCAT 57.121 33.333 0.00 0.00 33.17 2.45
3433 4148 1.466866 CGAGCACGACACCGAGATTTA 60.467 52.381 0.00 0.00 42.66 1.40
3463 4178 4.081420 AGGTTCATCGATATGGCTACATCC 60.081 45.833 0.00 0.00 38.53 3.51
3469 4184 0.118346 ATATGGCTACATCCCCGGGA 59.882 55.000 26.32 9.16 38.53 5.14
3470 4185 0.834687 TATGGCTACATCCCCGGGAC 60.835 60.000 26.32 0.00 38.53 4.46
3471 4186 3.557290 GGCTACATCCCCGGGACC 61.557 72.222 26.32 7.58 32.98 4.46
3481 4196 1.075525 CCCGGGACCTGACTATGGA 60.076 63.158 18.48 0.00 0.00 3.41
3491 4206 0.259065 TGACTATGGACGCTCCTCCT 59.741 55.000 5.77 0.00 37.46 3.69
3511 4226 3.181475 CCTCATGACACCGCTACAATACT 60.181 47.826 0.00 0.00 0.00 2.12
3545 4260 2.669569 GACACCAGCACATGCCGT 60.670 61.111 0.00 0.00 43.38 5.68
3585 4300 4.314961 CGGTGCTATTATGTTGGCATAGA 58.685 43.478 0.00 0.00 38.64 1.98
3586 4301 4.754618 CGGTGCTATTATGTTGGCATAGAA 59.245 41.667 0.00 0.00 38.64 2.10
3605 4320 3.066342 AGAATACATCGTGTGTCTACCCG 59.934 47.826 0.00 0.00 42.29 5.28
3606 4321 1.097232 TACATCGTGTGTCTACCCGG 58.903 55.000 0.00 0.00 42.29 5.73
3607 4322 1.518572 CATCGTGTGTCTACCCGGC 60.519 63.158 0.00 0.00 0.00 6.13
3625 4340 2.389715 GGCCCGCTATATATGAGAGGT 58.610 52.381 0.00 0.00 32.37 3.85
3642 4357 5.044772 TGAGAGGTCTAGGATACAAGTGTCT 60.045 44.000 0.00 0.00 41.41 3.41
3648 4363 9.134055 AGGTCTAGGATACAAGTGTCTTATTAC 57.866 37.037 0.00 0.00 41.41 1.89
3649 4364 8.910944 GGTCTAGGATACAAGTGTCTTATTACA 58.089 37.037 0.00 0.00 41.41 2.41
3650 4365 9.733219 GTCTAGGATACAAGTGTCTTATTACAC 57.267 37.037 0.00 0.00 44.87 2.90
3672 4387 8.788325 ACACTACTGGAAATTAGGTCATTAAC 57.212 34.615 0.00 0.00 0.00 2.01
3673 4388 7.548075 ACACTACTGGAAATTAGGTCATTAACG 59.452 37.037 0.00 0.00 0.00 3.18
3674 4389 7.762615 CACTACTGGAAATTAGGTCATTAACGA 59.237 37.037 0.00 0.00 0.00 3.85
3675 4390 8.483758 ACTACTGGAAATTAGGTCATTAACGAT 58.516 33.333 0.00 0.00 0.00 3.73
3676 4391 7.553881 ACTGGAAATTAGGTCATTAACGATG 57.446 36.000 0.00 0.00 37.08 3.84
3678 4393 7.495934 ACTGGAAATTAGGTCATTAACGATGAG 59.504 37.037 0.00 0.00 45.16 2.90
3686 4401 5.298794 GTCATTAACGATGAGCTACGAAC 57.701 43.478 12.97 0.00 45.16 3.95
3687 4402 4.796830 GTCATTAACGATGAGCTACGAACA 59.203 41.667 12.97 0.00 45.16 3.18
3689 4404 6.019801 GTCATTAACGATGAGCTACGAACAAT 60.020 38.462 12.97 7.05 45.16 2.71
3690 4405 7.166970 GTCATTAACGATGAGCTACGAACAATA 59.833 37.037 12.97 0.00 45.16 1.90
3691 4406 6.801367 TTAACGATGAGCTACGAACAATAC 57.199 37.500 12.97 0.00 0.00 1.89
3692 4407 4.634184 ACGATGAGCTACGAACAATACT 57.366 40.909 12.97 0.00 0.00 2.12
3693 4408 4.995124 ACGATGAGCTACGAACAATACTT 58.005 39.130 12.97 0.00 0.00 2.24
3694 4409 4.798907 ACGATGAGCTACGAACAATACTTG 59.201 41.667 12.97 0.00 0.00 3.16
3695 4410 4.207224 CGATGAGCTACGAACAATACTTGG 59.793 45.833 0.00 0.00 34.12 3.61
3696 4411 4.530710 TGAGCTACGAACAATACTTGGT 57.469 40.909 0.00 0.00 34.12 3.67
3697 4412 4.491676 TGAGCTACGAACAATACTTGGTC 58.508 43.478 0.00 0.00 43.92 4.02
3706 4421 6.535274 GAACAATACTTGGTCGTTACTGTT 57.465 37.500 0.00 0.00 37.67 3.16
3707 4422 7.642071 GAACAATACTTGGTCGTTACTGTTA 57.358 36.000 0.00 0.00 37.67 2.41
3708 4423 7.647907 AACAATACTTGGTCGTTACTGTTAG 57.352 36.000 0.00 0.00 34.12 2.34
3709 4424 6.161381 ACAATACTTGGTCGTTACTGTTAGG 58.839 40.000 0.00 0.00 34.12 2.69
3711 4426 2.289257 ACTTGGTCGTTACTGTTAGGGC 60.289 50.000 0.00 0.00 0.00 5.19
3712 4427 0.244450 TGGTCGTTACTGTTAGGGCG 59.756 55.000 0.00 0.00 0.00 6.13
3713 4428 0.459063 GGTCGTTACTGTTAGGGCGG 60.459 60.000 0.00 0.00 0.00 6.13
3721 5546 3.060000 GTTAGGGCGGGCCAACAC 61.060 66.667 23.67 11.80 37.98 3.32
3724 5549 3.636929 TAGGGCGGGCCAACACATG 62.637 63.158 23.67 0.00 37.98 3.21
3726 5551 3.747976 GGCGGGCCAACACATGTC 61.748 66.667 4.39 0.00 35.81 3.06
3727 5552 3.747976 GCGGGCCAACACATGTCC 61.748 66.667 4.39 0.00 0.00 4.02
3728 5553 2.282110 CGGGCCAACACATGTCCA 60.282 61.111 4.39 0.00 0.00 4.02
3731 5556 0.827507 GGGCCAACACATGTCCAACT 60.828 55.000 4.39 0.00 0.00 3.16
3732 5557 1.039856 GGCCAACACATGTCCAACTT 58.960 50.000 0.00 0.00 0.00 2.66
3733 5558 1.269726 GGCCAACACATGTCCAACTTG 60.270 52.381 0.00 0.00 0.00 3.16
3734 5559 1.869342 GCCAACACATGTCCAACTTGC 60.869 52.381 0.00 0.00 0.00 4.01
3736 5561 0.030638 AACACATGTCCAACTTGCGC 59.969 50.000 0.00 0.00 0.00 6.09
3737 5562 1.100463 ACACATGTCCAACTTGCGCA 61.100 50.000 5.66 5.66 0.00 6.09
3738 5563 0.661187 CACATGTCCAACTTGCGCAC 60.661 55.000 11.12 0.00 0.00 5.34
3754 5579 0.101759 GCACGCGAGAACCCATAGTA 59.898 55.000 15.93 0.00 0.00 1.82
3757 5582 3.551454 GCACGCGAGAACCCATAGTATTA 60.551 47.826 15.93 0.00 0.00 0.98
3758 5583 4.227538 CACGCGAGAACCCATAGTATTAG 58.772 47.826 15.93 0.00 0.00 1.73
3759 5584 3.243336 CGCGAGAACCCATAGTATTAGC 58.757 50.000 0.00 0.00 0.00 3.09
3761 5586 4.238514 GCGAGAACCCATAGTATTAGCTG 58.761 47.826 0.00 0.00 0.00 4.24
3762 5587 4.810790 CGAGAACCCATAGTATTAGCTGG 58.189 47.826 0.00 0.00 0.00 4.85
3763 5588 4.281182 CGAGAACCCATAGTATTAGCTGGT 59.719 45.833 0.00 0.00 0.00 4.00
3765 5590 4.348168 AGAACCCATAGTATTAGCTGGTGG 59.652 45.833 0.00 0.00 0.00 4.61
3766 5591 3.665443 ACCCATAGTATTAGCTGGTGGT 58.335 45.455 0.00 0.00 0.00 4.16
3767 5592 3.646637 ACCCATAGTATTAGCTGGTGGTC 59.353 47.826 0.00 0.00 0.00 4.02
3768 5593 3.306088 CCCATAGTATTAGCTGGTGGTCG 60.306 52.174 0.00 0.00 0.00 4.79
3770 5595 4.547532 CATAGTATTAGCTGGTGGTCGTC 58.452 47.826 0.00 0.00 0.00 4.20
3771 5596 2.453521 AGTATTAGCTGGTGGTCGTCA 58.546 47.619 0.00 0.00 0.00 4.35
3772 5597 3.031736 AGTATTAGCTGGTGGTCGTCAT 58.968 45.455 0.00 0.00 0.00 3.06
3774 5599 2.093306 TTAGCTGGTGGTCGTCATTG 57.907 50.000 0.00 0.00 0.00 2.82
3777 5602 1.514678 GCTGGTGGTCGTCATTGCAA 61.515 55.000 0.00 0.00 0.00 4.08
3778 5603 1.167851 CTGGTGGTCGTCATTGCAAT 58.832 50.000 5.99 5.99 0.00 3.56
3779 5604 1.131126 CTGGTGGTCGTCATTGCAATC 59.869 52.381 9.53 0.00 0.00 2.67
3780 5605 1.271325 TGGTGGTCGTCATTGCAATCT 60.271 47.619 9.53 0.00 0.00 2.40
3781 5606 1.398390 GGTGGTCGTCATTGCAATCTC 59.602 52.381 9.53 4.69 0.00 2.75
3782 5607 1.398390 GTGGTCGTCATTGCAATCTCC 59.602 52.381 9.53 8.21 0.00 3.71
3783 5608 1.278985 TGGTCGTCATTGCAATCTCCT 59.721 47.619 9.53 0.00 0.00 3.69
3784 5609 2.290260 TGGTCGTCATTGCAATCTCCTT 60.290 45.455 9.53 0.00 0.00 3.36
3785 5610 3.055458 TGGTCGTCATTGCAATCTCCTTA 60.055 43.478 9.53 0.00 0.00 2.69
3787 5612 4.212214 GGTCGTCATTGCAATCTCCTTATC 59.788 45.833 9.53 0.00 0.00 1.75
3788 5613 5.053145 GTCGTCATTGCAATCTCCTTATCT 58.947 41.667 9.53 0.00 0.00 1.98
3791 5616 7.386299 GTCGTCATTGCAATCTCCTTATCTTAT 59.614 37.037 9.53 0.00 0.00 1.73
3793 5618 7.601886 CGTCATTGCAATCTCCTTATCTTATCT 59.398 37.037 9.53 0.00 0.00 1.98
3794 5619 9.282569 GTCATTGCAATCTCCTTATCTTATCTT 57.717 33.333 9.53 0.00 0.00 2.40
3795 5620 9.857656 TCATTGCAATCTCCTTATCTTATCTTT 57.142 29.630 9.53 0.00 0.00 2.52
3851 6415 7.241663 TCGGTGAAAAGGATAAATATCAACG 57.758 36.000 4.77 4.77 46.24 4.10
3852 6416 6.819649 TCGGTGAAAAGGATAAATATCAACGT 59.180 34.615 10.32 0.00 45.38 3.99
3869 6433 6.585695 TCAACGTATTGAGTCTAGGTTTCT 57.414 37.500 0.00 0.00 40.01 2.52
3870 6434 6.989659 TCAACGTATTGAGTCTAGGTTTCTT 58.010 36.000 0.00 0.00 40.01 2.52
3872 6436 8.746530 TCAACGTATTGAGTCTAGGTTTCTTAT 58.253 33.333 0.00 0.00 40.01 1.73
3873 6437 9.021863 CAACGTATTGAGTCTAGGTTTCTTATC 57.978 37.037 0.00 0.00 38.15 1.75
3875 6439 8.968969 ACGTATTGAGTCTAGGTTTCTTATCTT 58.031 33.333 0.00 0.00 0.00 2.40
3898 7188 2.781757 ACCTAATAACTAAGGTGGCCCC 59.218 50.000 0.00 0.03 44.53 5.80
3899 7189 5.076704 AACCTAATAACTAAGGTGGCCCCT 61.077 45.833 0.00 3.05 45.51 4.79
3907 7197 3.961414 GGTGGCCCCTTTGACCGA 61.961 66.667 0.00 0.00 0.00 4.69
3908 7198 2.114411 GTGGCCCCTTTGACCGAA 59.886 61.111 0.00 0.00 0.00 4.30
3912 7202 1.524008 GGCCCCTTTGACCGAAACAG 61.524 60.000 0.00 0.00 0.00 3.16
3914 7204 0.109723 CCCCTTTGACCGAAACAGGA 59.890 55.000 0.00 0.00 34.73 3.86
3918 7208 0.179067 TTTGACCGAAACAGGACGCT 60.179 50.000 0.00 0.00 34.73 5.07
3919 7209 0.179067 TTGACCGAAACAGGACGCTT 60.179 50.000 0.00 0.00 34.73 4.68
3922 7212 2.556287 CGAAACAGGACGCTTGCC 59.444 61.111 0.00 0.00 0.00 4.52
3925 7215 1.901650 GAAACAGGACGCTTGCCTCG 61.902 60.000 0.00 0.00 32.12 4.63
3926 7216 2.377628 AAACAGGACGCTTGCCTCGA 62.378 55.000 0.00 0.00 32.12 4.04
3927 7217 2.172483 AACAGGACGCTTGCCTCGAT 62.172 55.000 0.00 0.00 32.12 3.59
3929 7219 1.153549 AGGACGCTTGCCTCGATTC 60.154 57.895 0.00 0.00 0.00 2.52
3930 7220 1.447838 GGACGCTTGCCTCGATTCA 60.448 57.895 0.00 0.00 0.00 2.57
3932 7222 0.458543 GACGCTTGCCTCGATTCAGA 60.459 55.000 0.00 0.00 0.00 3.27
3942 7232 2.666526 GATTCAGATCGGCCCGCC 60.667 66.667 0.00 0.00 0.00 6.13
3943 7233 3.460672 GATTCAGATCGGCCCGCCA 62.461 63.158 6.52 0.00 35.37 5.69
3944 7234 2.940890 GATTCAGATCGGCCCGCCAA 62.941 60.000 6.52 0.00 35.37 4.52
3945 7235 2.343475 ATTCAGATCGGCCCGCCAAT 62.343 55.000 6.52 0.00 35.37 3.16
3946 7236 3.282157 CAGATCGGCCCGCCAATG 61.282 66.667 6.52 0.00 35.37 2.82
3968 7258 4.771356 CGACGGCGGCTTTCGAGA 62.771 66.667 20.68 0.00 42.43 4.04
3969 7259 2.431942 GACGGCGGCTTTCGAGAA 60.432 61.111 13.24 0.00 42.43 2.87
3970 7260 2.432628 ACGGCGGCTTTCGAGAAG 60.433 61.111 13.24 3.79 42.43 2.85
3971 7261 3.188786 CGGCGGCTTTCGAGAAGG 61.189 66.667 7.61 0.00 42.43 3.46
3972 7262 2.820037 GGCGGCTTTCGAGAAGGG 60.820 66.667 0.00 0.00 42.43 3.95
3973 7263 2.047179 GCGGCTTTCGAGAAGGGT 60.047 61.111 0.00 0.00 42.43 4.34
3974 7264 1.671379 GCGGCTTTCGAGAAGGGTT 60.671 57.895 0.00 0.00 42.43 4.11
3975 7265 1.912371 GCGGCTTTCGAGAAGGGTTG 61.912 60.000 0.00 0.00 42.43 3.77
3978 7268 1.912371 GCTTTCGAGAAGGGTTGCCG 61.912 60.000 8.68 0.00 0.00 5.69
3980 7270 1.760479 TTTCGAGAAGGGTTGCCGGA 61.760 55.000 5.05 0.00 0.00 5.14
3982 7272 1.815421 CGAGAAGGGTTGCCGGATG 60.815 63.158 5.05 0.00 0.00 3.51
3983 7273 2.044946 AGAAGGGTTGCCGGATGC 60.045 61.111 5.05 0.00 41.77 3.91
3984 7274 3.140814 GAAGGGTTGCCGGATGCC 61.141 66.667 5.05 2.22 40.16 4.40
4016 7306 3.264897 CCGATGCGCTGCTGGTAC 61.265 66.667 9.73 0.00 0.00 3.34
4017 7307 2.509111 CGATGCGCTGCTGGTACA 60.509 61.111 9.73 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.056480 CCTCGTTGCCTTACATCATCATTA 58.944 41.667 0.00 0.00 0.00 1.90
2 3 3.879295 CCTCGTTGCCTTACATCATCATT 59.121 43.478 0.00 0.00 0.00 2.57
3 4 3.470709 CCTCGTTGCCTTACATCATCAT 58.529 45.455 0.00 0.00 0.00 2.45
4 5 2.905075 CCTCGTTGCCTTACATCATCA 58.095 47.619 0.00 0.00 0.00 3.07
5 6 1.599542 GCCTCGTTGCCTTACATCATC 59.400 52.381 0.00 0.00 0.00 2.92
6 7 1.668419 GCCTCGTTGCCTTACATCAT 58.332 50.000 0.00 0.00 0.00 2.45
7 8 3.153024 GCCTCGTTGCCTTACATCA 57.847 52.632 0.00 0.00 0.00 3.07
16 17 1.202114 TGATGATTTTGGCCTCGTTGC 59.798 47.619 3.32 0.00 0.00 4.17
17 18 3.244976 GTTGATGATTTTGGCCTCGTTG 58.755 45.455 3.32 0.00 0.00 4.10
18 19 2.890311 TGTTGATGATTTTGGCCTCGTT 59.110 40.909 3.32 0.00 0.00 3.85
19 20 2.513753 TGTTGATGATTTTGGCCTCGT 58.486 42.857 3.32 0.00 0.00 4.18
20 21 3.574284 TTGTTGATGATTTTGGCCTCG 57.426 42.857 3.32 0.00 0.00 4.63
21 22 5.047802 TCTCTTTGTTGATGATTTTGGCCTC 60.048 40.000 3.32 0.00 0.00 4.70
22 23 4.834496 TCTCTTTGTTGATGATTTTGGCCT 59.166 37.500 3.32 0.00 0.00 5.19
23 24 5.138125 TCTCTTTGTTGATGATTTTGGCC 57.862 39.130 0.00 0.00 0.00 5.36
24 25 5.776744 ACTCTCTTTGTTGATGATTTTGGC 58.223 37.500 0.00 0.00 0.00 4.52
25 26 7.874940 TGTACTCTCTTTGTTGATGATTTTGG 58.125 34.615 0.00 0.00 0.00 3.28
26 27 9.390795 CTTGTACTCTCTTTGTTGATGATTTTG 57.609 33.333 0.00 0.00 0.00 2.44
27 28 9.342308 TCTTGTACTCTCTTTGTTGATGATTTT 57.658 29.630 0.00 0.00 0.00 1.82
28 29 8.778358 GTCTTGTACTCTCTTTGTTGATGATTT 58.222 33.333 0.00 0.00 0.00 2.17
29 30 7.933577 TGTCTTGTACTCTCTTTGTTGATGATT 59.066 33.333 0.00 0.00 0.00 2.57
30 31 7.445121 TGTCTTGTACTCTCTTTGTTGATGAT 58.555 34.615 0.00 0.00 0.00 2.45
31 32 6.816136 TGTCTTGTACTCTCTTTGTTGATGA 58.184 36.000 0.00 0.00 0.00 2.92
32 33 7.664082 ATGTCTTGTACTCTCTTTGTTGATG 57.336 36.000 0.00 0.00 0.00 3.07
33 34 9.778741 TTTATGTCTTGTACTCTCTTTGTTGAT 57.221 29.630 0.00 0.00 0.00 2.57
34 35 9.778741 ATTTATGTCTTGTACTCTCTTTGTTGA 57.221 29.630 0.00 0.00 0.00 3.18
40 41 9.654663 GTGGTTATTTATGTCTTGTACTCTCTT 57.345 33.333 0.00 0.00 0.00 2.85
41 42 7.974501 CGTGGTTATTTATGTCTTGTACTCTCT 59.025 37.037 0.00 0.00 0.00 3.10
42 43 7.972277 TCGTGGTTATTTATGTCTTGTACTCTC 59.028 37.037 0.00 0.00 0.00 3.20
43 44 7.833786 TCGTGGTTATTTATGTCTTGTACTCT 58.166 34.615 0.00 0.00 0.00 3.24
44 45 8.644318 ATCGTGGTTATTTATGTCTTGTACTC 57.356 34.615 0.00 0.00 0.00 2.59
45 46 9.745880 CTATCGTGGTTATTTATGTCTTGTACT 57.254 33.333 0.00 0.00 0.00 2.73
46 47 9.740239 TCTATCGTGGTTATTTATGTCTTGTAC 57.260 33.333 0.00 0.00 0.00 2.90
48 49 9.095065 GTTCTATCGTGGTTATTTATGTCTTGT 57.905 33.333 0.00 0.00 0.00 3.16
49 50 8.548721 GGTTCTATCGTGGTTATTTATGTCTTG 58.451 37.037 0.00 0.00 0.00 3.02
50 51 8.262227 TGGTTCTATCGTGGTTATTTATGTCTT 58.738 33.333 0.00 0.00 0.00 3.01
51 52 7.788026 TGGTTCTATCGTGGTTATTTATGTCT 58.212 34.615 0.00 0.00 0.00 3.41
52 53 8.603242 ATGGTTCTATCGTGGTTATTTATGTC 57.397 34.615 0.00 0.00 0.00 3.06
53 54 8.974060 AATGGTTCTATCGTGGTTATTTATGT 57.026 30.769 0.00 0.00 0.00 2.29
56 57 9.887629 TTGTAATGGTTCTATCGTGGTTATTTA 57.112 29.630 0.00 0.00 0.00 1.40
57 58 8.795842 TTGTAATGGTTCTATCGTGGTTATTT 57.204 30.769 0.00 0.00 0.00 1.40
58 59 8.262227 TCTTGTAATGGTTCTATCGTGGTTATT 58.738 33.333 0.00 0.00 0.00 1.40
59 60 7.788026 TCTTGTAATGGTTCTATCGTGGTTAT 58.212 34.615 0.00 0.00 0.00 1.89
60 61 7.172868 TCTTGTAATGGTTCTATCGTGGTTA 57.827 36.000 0.00 0.00 0.00 2.85
61 62 6.045072 TCTTGTAATGGTTCTATCGTGGTT 57.955 37.500 0.00 0.00 0.00 3.67
62 63 5.670792 TCTTGTAATGGTTCTATCGTGGT 57.329 39.130 0.00 0.00 0.00 4.16
63 64 8.088365 TCATATCTTGTAATGGTTCTATCGTGG 58.912 37.037 0.00 0.00 0.00 4.94
64 65 9.476202 TTCATATCTTGTAATGGTTCTATCGTG 57.524 33.333 0.00 0.00 0.00 4.35
73 74 8.686334 GGTGTTGATTTCATATCTTGTAATGGT 58.314 33.333 0.00 0.00 0.00 3.55
74 75 8.906867 AGGTGTTGATTTCATATCTTGTAATGG 58.093 33.333 0.00 0.00 0.00 3.16
77 78 9.093970 CGTAGGTGTTGATTTCATATCTTGTAA 57.906 33.333 0.00 0.00 0.00 2.41
78 79 8.471609 TCGTAGGTGTTGATTTCATATCTTGTA 58.528 33.333 0.00 0.00 0.00 2.41
79 80 7.277981 GTCGTAGGTGTTGATTTCATATCTTGT 59.722 37.037 0.00 0.00 0.00 3.16
80 81 7.492669 AGTCGTAGGTGTTGATTTCATATCTTG 59.507 37.037 0.00 0.00 0.00 3.02
81 82 7.556844 AGTCGTAGGTGTTGATTTCATATCTT 58.443 34.615 0.00 0.00 0.00 2.40
82 83 7.113658 AGTCGTAGGTGTTGATTTCATATCT 57.886 36.000 0.00 0.00 0.00 1.98
83 84 8.867112 TTAGTCGTAGGTGTTGATTTCATATC 57.133 34.615 0.00 0.00 0.00 1.63
84 85 8.475639 ACTTAGTCGTAGGTGTTGATTTCATAT 58.524 33.333 0.00 0.00 0.00 1.78
85 86 7.833786 ACTTAGTCGTAGGTGTTGATTTCATA 58.166 34.615 0.00 0.00 0.00 2.15
86 87 6.698380 ACTTAGTCGTAGGTGTTGATTTCAT 58.302 36.000 0.00 0.00 0.00 2.57
87 88 6.092955 ACTTAGTCGTAGGTGTTGATTTCA 57.907 37.500 0.00 0.00 0.00 2.69
88 89 6.629182 GACTTAGTCGTAGGTGTTGATTTC 57.371 41.667 0.00 0.00 0.00 2.17
103 104 2.095364 TGCGGAAGAAGTCGACTTAGTC 60.095 50.000 29.79 25.94 36.11 2.59
104 105 1.884579 TGCGGAAGAAGTCGACTTAGT 59.115 47.619 29.79 20.21 36.11 2.24
105 106 2.520979 CTGCGGAAGAAGTCGACTTAG 58.479 52.381 29.79 17.66 36.11 2.18
106 107 1.402456 GCTGCGGAAGAAGTCGACTTA 60.402 52.381 29.79 12.24 39.71 2.24
107 108 0.667792 GCTGCGGAAGAAGTCGACTT 60.668 55.000 30.12 30.12 39.71 3.01
108 109 1.080434 GCTGCGGAAGAAGTCGACT 60.080 57.895 13.58 13.58 39.71 4.18
109 110 0.944311 TTGCTGCGGAAGAAGTCGAC 60.944 55.000 7.70 7.70 39.71 4.20
110 111 0.944311 GTTGCTGCGGAAGAAGTCGA 60.944 55.000 0.00 0.00 39.71 4.20
111 112 1.493311 GTTGCTGCGGAAGAAGTCG 59.507 57.895 0.00 0.00 39.71 4.18
112 113 1.493311 CGTTGCTGCGGAAGAAGTC 59.507 57.895 0.00 0.00 39.71 3.01
113 114 2.607892 GCGTTGCTGCGGAAGAAGT 61.608 57.895 0.00 0.00 39.71 3.01
114 115 2.174349 GCGTTGCTGCGGAAGAAG 59.826 61.111 0.00 0.00 40.88 2.85
115 116 3.353836 GGCGTTGCTGCGGAAGAA 61.354 61.111 0.00 0.00 35.06 2.52
116 117 3.825160 AAGGCGTTGCTGCGGAAGA 62.825 57.895 0.00 0.00 35.06 2.87
117 118 3.314388 GAAGGCGTTGCTGCGGAAG 62.314 63.158 0.00 0.00 35.06 3.46
118 119 3.353836 GAAGGCGTTGCTGCGGAA 61.354 61.111 0.00 0.00 35.06 4.30
119 120 4.617520 TGAAGGCGTTGCTGCGGA 62.618 61.111 0.00 0.00 35.06 5.54
120 121 3.659092 TTGAAGGCGTTGCTGCGG 61.659 61.111 0.00 0.00 35.06 5.69
121 122 2.427410 GTTGAAGGCGTTGCTGCG 60.427 61.111 0.00 0.00 35.06 5.18
122 123 0.936297 CTTGTTGAAGGCGTTGCTGC 60.936 55.000 0.00 0.00 0.00 5.25
123 124 0.662619 TCTTGTTGAAGGCGTTGCTG 59.337 50.000 0.00 0.00 0.00 4.41
124 125 1.609208 ATCTTGTTGAAGGCGTTGCT 58.391 45.000 0.00 0.00 0.00 3.91
125 126 3.126858 TCATATCTTGTTGAAGGCGTTGC 59.873 43.478 0.00 0.00 0.00 4.17
126 127 4.944962 TCATATCTTGTTGAAGGCGTTG 57.055 40.909 0.00 0.00 0.00 4.10
127 128 5.957842 TTTCATATCTTGTTGAAGGCGTT 57.042 34.783 0.00 0.00 33.68 4.84
128 129 5.957842 TTTTCATATCTTGTTGAAGGCGT 57.042 34.783 0.00 0.00 33.68 5.68
129 130 5.973565 GGATTTTCATATCTTGTTGAAGGCG 59.026 40.000 0.00 0.00 33.68 5.52
130 131 6.866480 TGGATTTTCATATCTTGTTGAAGGC 58.134 36.000 0.00 0.00 33.68 4.35
131 132 7.340232 TCCTGGATTTTCATATCTTGTTGAAGG 59.660 37.037 0.00 0.00 33.68 3.46
132 133 8.284945 TCCTGGATTTTCATATCTTGTTGAAG 57.715 34.615 0.00 0.00 33.68 3.02
133 134 8.827832 ATCCTGGATTTTCATATCTTGTTGAA 57.172 30.769 2.57 0.00 0.00 2.69
134 135 8.689061 CAATCCTGGATTTTCATATCTTGTTGA 58.311 33.333 19.12 0.00 28.87 3.18
135 136 7.924412 CCAATCCTGGATTTTCATATCTTGTTG 59.076 37.037 19.12 4.75 46.92 3.33
136 137 8.015185 CCAATCCTGGATTTTCATATCTTGTT 57.985 34.615 19.12 0.00 46.92 2.83
137 138 7.592885 CCAATCCTGGATTTTCATATCTTGT 57.407 36.000 19.12 0.00 46.92 3.16
167 168 5.937111 TGGTAAAGGATTAGGATACCAAGC 58.063 41.667 0.70 0.00 42.14 4.01
213 214 2.857748 GGCGCATTTGGCTTACAATTAC 59.142 45.455 10.83 0.00 41.67 1.89
217 218 0.897863 AGGGCGCATTTGGCTTACAA 60.898 50.000 10.83 0.00 41.67 2.41
226 227 2.418368 TTGTCTCATAGGGCGCATTT 57.582 45.000 10.83 0.00 0.00 2.32
231 232 2.350522 GCCATATTGTCTCATAGGGCG 58.649 52.381 0.95 0.00 39.84 6.13
238 239 5.423886 TGTCATTTACGCCATATTGTCTCA 58.576 37.500 0.00 0.00 0.00 3.27
242 243 7.217200 ACTATCTGTCATTTACGCCATATTGT 58.783 34.615 0.00 0.00 0.00 2.71
247 248 4.273480 GCAACTATCTGTCATTTACGCCAT 59.727 41.667 0.00 0.00 0.00 4.40
248 249 3.621268 GCAACTATCTGTCATTTACGCCA 59.379 43.478 0.00 0.00 0.00 5.69
253 254 5.565509 TGGGTTGCAACTATCTGTCATTTA 58.434 37.500 27.64 0.00 0.00 1.40
255 256 4.032960 TGGGTTGCAACTATCTGTCATT 57.967 40.909 27.64 0.00 0.00 2.57
357 358 2.427232 AAACGTCGCTTGCAGTAGTA 57.573 45.000 0.00 0.00 0.00 1.82
360 361 1.860676 AGAAAACGTCGCTTGCAGTA 58.139 45.000 0.00 0.00 0.00 2.74
361 362 1.860676 TAGAAAACGTCGCTTGCAGT 58.139 45.000 0.00 0.00 0.00 4.40
362 363 3.366724 TGTATAGAAAACGTCGCTTGCAG 59.633 43.478 0.00 0.00 0.00 4.41
433 439 3.941483 GCGGGTCAATGCAATAGCTATAT 59.059 43.478 6.68 0.00 42.74 0.86
434 440 3.334691 GCGGGTCAATGCAATAGCTATA 58.665 45.455 6.68 0.00 42.74 1.31
573 615 5.577164 CCCGCCATTTCTCTTATCTTATACG 59.423 44.000 0.00 0.00 0.00 3.06
721 828 0.680061 GGACTTGGACTGGTCGAGTT 59.320 55.000 8.85 0.00 33.83 3.01
851 977 0.921896 AGCCATGGAGGTGCTACAAT 59.078 50.000 18.40 0.00 40.61 2.71
977 1114 1.067071 GCCCTCGGTGGTATGTATAGC 60.067 57.143 0.00 0.00 0.00 2.97
985 1122 4.155733 CATGCGCCCTCGGTGGTA 62.156 66.667 4.18 0.00 33.18 3.25
1130 1279 6.704289 AAGTTATATCGTACACCTACAGCA 57.296 37.500 0.00 0.00 0.00 4.41
1157 1432 7.761038 AGGGTTTATCGTTCTTTCTCAAAAT 57.239 32.000 0.00 0.00 0.00 1.82
1224 1501 3.675228 GCAGTAGGTGCGTGTACAATAGT 60.675 47.826 0.00 0.00 43.99 2.12
1225 1502 2.858344 GCAGTAGGTGCGTGTACAATAG 59.142 50.000 0.00 0.00 43.99 1.73
1257 1538 0.530650 CCATAGCACACGCCTACCTG 60.531 60.000 0.00 0.00 39.83 4.00
1305 1586 1.885850 GCAGTTTCACCACGGACGT 60.886 57.895 0.00 0.00 0.00 4.34
1406 1687 1.116536 TGGTTAGCTCCACCGTGACA 61.117 55.000 9.85 0.00 37.07 3.58
1520 1804 4.485834 TTCCCGATCGTCACGCCG 62.486 66.667 15.09 0.00 0.00 6.46
1565 1849 4.900154 GGGACGAGCTGAGAGTTG 57.100 61.111 0.00 0.00 0.00 3.16
1808 2092 1.524621 GATGGACATGCCGGGAGTG 60.525 63.158 2.18 3.55 40.66 3.51
2075 2362 2.484417 GCTCATGAGACCATCGGTGAAT 60.484 50.000 27.04 0.00 35.25 2.57
2285 2578 2.104111 ACCATGGACAAAGTCGACTTGA 59.896 45.455 30.33 13.01 36.12 3.02
2534 2866 0.827089 CCTGGTTGACAATGGTGGCA 60.827 55.000 0.00 0.00 42.77 4.92
2536 2868 0.827089 TGCCTGGTTGACAATGGTGG 60.827 55.000 0.00 0.00 0.00 4.61
2579 2922 1.819288 AGTGTAGAGTGGATGGTCGTG 59.181 52.381 0.00 0.00 0.00 4.35
2585 2928 4.097135 CCAGTGTAGAGTGTAGAGTGGATG 59.903 50.000 11.80 0.00 34.31 3.51
2709 3052 2.656646 CAGGCGTAGTCCAGTGCA 59.343 61.111 0.00 0.00 0.00 4.57
2712 3055 3.760035 CCGCAGGCGTAGTCCAGT 61.760 66.667 13.07 0.00 46.14 4.00
2805 3154 4.930405 TGGTAATAGTCATTGAACGCGAAA 59.070 37.500 15.93 4.36 0.00 3.46
2873 3222 1.819632 GCCTGCCGGACAATGGTAG 60.820 63.158 5.05 0.00 38.76 3.18
2918 3597 4.037469 GTTTCGTGAAACTAGAACGAGC 57.963 45.455 16.21 0.97 45.94 5.03
2948 3628 3.615155 TCACCATTCACAAACAGACACA 58.385 40.909 0.00 0.00 0.00 3.72
2961 3642 4.003648 AGAGTGGAACGAAATCACCATTC 58.996 43.478 0.00 0.00 45.86 2.67
3100 3811 3.135994 TGAAAACTAGACTTTGCCGGAC 58.864 45.455 5.05 0.00 0.00 4.79
3101 3812 3.478857 TGAAAACTAGACTTTGCCGGA 57.521 42.857 5.05 0.00 0.00 5.14
3150 3865 6.651225 ACTTACTCTAAGCACCTGATGAAAAC 59.349 38.462 0.00 0.00 39.39 2.43
3171 3886 7.601130 CGTGCTATAAGCCCATTATTGTACTTA 59.399 37.037 0.00 0.00 41.51 2.24
3195 3910 4.139038 AGGCAAAAGTGTAATGTAACCGT 58.861 39.130 0.00 0.00 0.00 4.83
3196 3911 4.759516 AGGCAAAAGTGTAATGTAACCG 57.240 40.909 0.00 0.00 0.00 4.44
3203 3918 7.665559 TCTCTTTCACATAGGCAAAAGTGTAAT 59.334 33.333 0.00 0.00 33.84 1.89
3205 3920 6.530120 TCTCTTTCACATAGGCAAAAGTGTA 58.470 36.000 0.00 0.00 33.84 2.90
3206 3921 5.376625 TCTCTTTCACATAGGCAAAAGTGT 58.623 37.500 0.00 0.00 33.84 3.55
3226 3941 7.099764 TCTCACTATTTTTCCACATCACTCTC 58.900 38.462 0.00 0.00 0.00 3.20
3227 3942 7.009179 TCTCACTATTTTTCCACATCACTCT 57.991 36.000 0.00 0.00 0.00 3.24
3277 3992 5.474876 GCAATTGCCTAGGAGTAAAGCATAT 59.525 40.000 20.06 0.00 32.67 1.78
3283 3998 7.710676 TTTATTGCAATTGCCTAGGAGTAAA 57.289 32.000 26.94 16.86 41.18 2.01
3311 4026 7.546250 TCACCTTCTCTGTATCTCTTTCTTT 57.454 36.000 0.00 0.00 0.00 2.52
3348 4063 8.979574 CGGGTTTATTCTAACAAGCTATAAGAG 58.020 37.037 0.00 0.00 0.00 2.85
3359 4074 3.262405 AGTGCCTCGGGTTTATTCTAACA 59.738 43.478 0.00 0.00 0.00 2.41
3360 4075 3.869832 GAGTGCCTCGGGTTTATTCTAAC 59.130 47.826 0.00 0.00 0.00 2.34
3361 4076 3.773119 AGAGTGCCTCGGGTTTATTCTAA 59.227 43.478 0.00 0.00 35.36 2.10
3362 4077 3.132289 CAGAGTGCCTCGGGTTTATTCTA 59.868 47.826 0.00 0.00 35.36 2.10
3363 4078 2.093447 CAGAGTGCCTCGGGTTTATTCT 60.093 50.000 0.00 0.00 35.36 2.40
3371 4086 2.343163 GATCGACAGAGTGCCTCGGG 62.343 65.000 0.00 2.74 35.36 5.14
3393 4108 4.932146 TCGTATGATTGCTTGATTCTCGA 58.068 39.130 0.00 0.00 0.00 4.04
3398 4113 3.001634 CGTGCTCGTATGATTGCTTGATT 59.998 43.478 0.00 0.00 0.00 2.57
3400 4115 1.926510 CGTGCTCGTATGATTGCTTGA 59.073 47.619 0.00 0.00 0.00 3.02
3411 4126 1.022982 ATCTCGGTGTCGTGCTCGTA 61.023 55.000 8.17 0.00 38.33 3.43
3433 4148 4.929808 GCCATATCGATGAACCTCGTTAAT 59.070 41.667 8.54 0.00 39.62 1.40
3463 4178 1.075525 TCCATAGTCAGGTCCCGGG 60.076 63.158 16.85 16.85 0.00 5.73
3469 4184 0.033011 AGGAGCGTCCATAGTCAGGT 60.033 55.000 6.78 0.00 39.61 4.00
3470 4185 0.671251 GAGGAGCGTCCATAGTCAGG 59.329 60.000 6.78 0.00 39.61 3.86
3471 4186 0.671251 GGAGGAGCGTCCATAGTCAG 59.329 60.000 4.45 0.00 39.61 3.51
3481 4196 1.608717 GGTGTCATGAGGAGGAGCGT 61.609 60.000 0.00 0.00 0.00 5.07
3491 4206 3.780902 CAGTATTGTAGCGGTGTCATGA 58.219 45.455 0.00 0.00 0.00 3.07
3545 4260 2.358247 GAACGCAGGGAAAGCCGA 60.358 61.111 0.00 0.00 33.83 5.54
3605 4320 2.362717 GACCTCTCATATATAGCGGGCC 59.637 54.545 0.00 0.00 0.00 5.80
3606 4321 3.292460 AGACCTCTCATATATAGCGGGC 58.708 50.000 0.00 0.00 0.00 6.13
3607 4322 5.067273 CCTAGACCTCTCATATATAGCGGG 58.933 50.000 0.00 0.00 0.00 6.13
3648 4363 7.762615 TCGTTAATGACCTAATTTCCAGTAGTG 59.237 37.037 0.00 0.00 0.00 2.74
3649 4364 7.844009 TCGTTAATGACCTAATTTCCAGTAGT 58.156 34.615 0.00 0.00 0.00 2.73
3650 4365 8.765219 CATCGTTAATGACCTAATTTCCAGTAG 58.235 37.037 0.00 0.00 37.59 2.57
3651 4366 8.479689 TCATCGTTAATGACCTAATTTCCAGTA 58.520 33.333 0.00 0.00 39.52 2.74
3654 4369 6.260050 GCTCATCGTTAATGACCTAATTTCCA 59.740 38.462 0.00 0.00 39.52 3.53
3655 4370 6.483640 AGCTCATCGTTAATGACCTAATTTCC 59.516 38.462 0.00 0.00 39.52 3.13
3656 4371 7.484035 AGCTCATCGTTAATGACCTAATTTC 57.516 36.000 0.00 0.00 39.52 2.17
3657 4372 7.169308 CGTAGCTCATCGTTAATGACCTAATTT 59.831 37.037 0.00 0.00 39.52 1.82
3658 4373 6.641314 CGTAGCTCATCGTTAATGACCTAATT 59.359 38.462 0.00 0.00 39.52 1.40
3659 4374 6.016527 TCGTAGCTCATCGTTAATGACCTAAT 60.017 38.462 0.00 0.00 39.52 1.73
3660 4375 5.297527 TCGTAGCTCATCGTTAATGACCTAA 59.702 40.000 0.00 0.00 39.52 2.69
3663 4378 3.961182 TCGTAGCTCATCGTTAATGACC 58.039 45.455 0.00 0.00 39.52 4.02
3664 4379 4.796830 TGTTCGTAGCTCATCGTTAATGAC 59.203 41.667 0.00 0.00 39.52 3.06
3665 4380 4.989044 TGTTCGTAGCTCATCGTTAATGA 58.011 39.130 0.00 0.00 42.21 2.57
3666 4381 5.696260 TTGTTCGTAGCTCATCGTTAATG 57.304 39.130 0.00 0.00 36.65 1.90
3669 4384 6.127810 AGTATTGTTCGTAGCTCATCGTTA 57.872 37.500 0.00 0.00 0.00 3.18
3670 4385 4.995124 AGTATTGTTCGTAGCTCATCGTT 58.005 39.130 0.00 0.00 0.00 3.85
3672 4387 4.207224 CCAAGTATTGTTCGTAGCTCATCG 59.793 45.833 0.00 0.00 46.99 3.84
3673 4388 5.109903 ACCAAGTATTGTTCGTAGCTCATC 58.890 41.667 0.00 0.00 46.99 2.92
3674 4389 5.086104 ACCAAGTATTGTTCGTAGCTCAT 57.914 39.130 0.00 0.00 46.99 2.90
3675 4390 4.491676 GACCAAGTATTGTTCGTAGCTCA 58.508 43.478 0.00 0.00 46.99 4.26
3683 4398 6.535274 AACAGTAACGACCAAGTATTGTTC 57.465 37.500 0.00 0.00 46.99 3.18
3684 4399 6.647895 CCTAACAGTAACGACCAAGTATTGTT 59.352 38.462 0.00 0.00 46.99 2.83
3685 4400 6.161381 CCTAACAGTAACGACCAAGTATTGT 58.839 40.000 0.00 0.00 46.99 2.71
3687 4402 5.727434 CCCTAACAGTAACGACCAAGTATT 58.273 41.667 0.00 0.00 0.00 1.89
3689 4404 3.056607 GCCCTAACAGTAACGACCAAGTA 60.057 47.826 0.00 0.00 0.00 2.24
3690 4405 2.289257 GCCCTAACAGTAACGACCAAGT 60.289 50.000 0.00 0.00 0.00 3.16
3691 4406 2.344025 GCCCTAACAGTAACGACCAAG 58.656 52.381 0.00 0.00 0.00 3.61
3692 4407 1.337074 CGCCCTAACAGTAACGACCAA 60.337 52.381 0.00 0.00 0.00 3.67
3693 4408 0.244450 CGCCCTAACAGTAACGACCA 59.756 55.000 0.00 0.00 0.00 4.02
3694 4409 0.459063 CCGCCCTAACAGTAACGACC 60.459 60.000 0.00 0.00 0.00 4.79
3695 4410 0.459063 CCCGCCCTAACAGTAACGAC 60.459 60.000 0.00 0.00 0.00 4.34
3696 4411 1.892338 CCCGCCCTAACAGTAACGA 59.108 57.895 0.00 0.00 0.00 3.85
3697 4412 1.812507 GCCCGCCCTAACAGTAACG 60.813 63.158 0.00 0.00 0.00 3.18
3699 4414 1.490416 TTGGCCCGCCCTAACAGTAA 61.490 55.000 0.00 0.00 34.56 2.24
3700 4415 1.919308 TTGGCCCGCCCTAACAGTA 60.919 57.895 0.00 0.00 34.56 2.74
3703 4418 3.571216 TGTTGGCCCGCCCTAACA 61.571 61.111 0.00 5.43 34.45 2.41
3704 4419 3.060000 GTGTTGGCCCGCCCTAAC 61.060 66.667 0.00 2.68 34.56 2.34
3705 4420 2.913117 ATGTGTTGGCCCGCCCTAA 61.913 57.895 0.00 0.00 34.56 2.69
3706 4421 3.334891 ATGTGTTGGCCCGCCCTA 61.335 61.111 0.00 0.00 34.56 3.53
3709 4424 3.747976 GACATGTGTTGGCCCGCC 61.748 66.667 1.15 0.00 0.00 6.13
3721 5546 1.440850 CGTGCGCAAGTTGGACATG 60.441 57.895 14.00 0.00 41.68 3.21
3726 5551 4.724697 CTCGCGTGCGCAAGTTGG 62.725 66.667 23.94 13.78 42.06 3.77
3727 5552 3.222126 TTCTCGCGTGCGCAAGTTG 62.222 57.895 23.94 16.67 42.06 3.16
3728 5553 2.964925 TTCTCGCGTGCGCAAGTT 60.965 55.556 23.94 0.00 42.06 2.66
3734 5559 2.202690 TATGGGTTCTCGCGTGCG 60.203 61.111 5.77 8.14 41.35 5.34
3736 5561 2.795175 ATACTATGGGTTCTCGCGTG 57.205 50.000 5.77 3.13 0.00 5.34
3737 5562 3.305199 GCTAATACTATGGGTTCTCGCGT 60.305 47.826 5.77 0.00 0.00 6.01
3738 5563 3.057456 AGCTAATACTATGGGTTCTCGCG 60.057 47.826 0.00 0.00 0.00 5.87
3741 5566 5.511545 CCACCAGCTAATACTATGGGTTCTC 60.512 48.000 0.00 0.00 37.13 2.87
3743 5568 4.102681 ACCACCAGCTAATACTATGGGTTC 59.897 45.833 0.00 0.00 37.13 3.62
3750 5575 3.623703 TGACGACCACCAGCTAATACTA 58.376 45.455 0.00 0.00 0.00 1.82
3754 5579 2.632377 CAATGACGACCACCAGCTAAT 58.368 47.619 0.00 0.00 0.00 1.73
3757 5582 1.672356 GCAATGACGACCACCAGCT 60.672 57.895 0.00 0.00 0.00 4.24
3758 5583 1.514678 TTGCAATGACGACCACCAGC 61.515 55.000 0.00 0.00 0.00 4.85
3759 5584 1.131126 GATTGCAATGACGACCACCAG 59.869 52.381 18.59 0.00 0.00 4.00
3761 5586 1.398390 GAGATTGCAATGACGACCACC 59.602 52.381 18.59 0.00 0.00 4.61
3762 5587 1.398390 GGAGATTGCAATGACGACCAC 59.602 52.381 18.59 0.00 0.00 4.16
3763 5588 1.278985 AGGAGATTGCAATGACGACCA 59.721 47.619 18.59 0.00 0.00 4.02
3765 5590 5.053145 AGATAAGGAGATTGCAATGACGAC 58.947 41.667 18.59 1.32 0.00 4.34
3766 5591 5.282055 AGATAAGGAGATTGCAATGACGA 57.718 39.130 18.59 0.00 0.00 4.20
3767 5592 5.998454 AAGATAAGGAGATTGCAATGACG 57.002 39.130 18.59 0.00 0.00 4.35
3768 5593 8.845413 AGATAAGATAAGGAGATTGCAATGAC 57.155 34.615 18.59 10.10 0.00 3.06
3825 5877 8.342634 CGTTGATATTTATCCTTTTCACCGATT 58.657 33.333 0.00 0.00 31.71 3.34
3846 6410 6.585695 AGAAACCTAGACTCAATACGTTGA 57.414 37.500 0.00 0.00 41.89 3.18
3847 6411 8.928270 ATAAGAAACCTAGACTCAATACGTTG 57.072 34.615 0.00 0.00 36.65 4.10
3870 6434 8.654094 GGCCACCTTAGTTATTAGGTTAAGATA 58.346 37.037 0.00 0.00 42.01 1.98
3872 6436 6.126681 GGGCCACCTTAGTTATTAGGTTAAGA 60.127 42.308 4.39 0.00 42.01 2.10
3873 6437 6.060136 GGGCCACCTTAGTTATTAGGTTAAG 58.940 44.000 4.39 0.00 42.01 1.85
3875 6439 4.413189 GGGGCCACCTTAGTTATTAGGTTA 59.587 45.833 4.39 0.00 42.01 2.85
3876 6440 3.203710 GGGGCCACCTTAGTTATTAGGTT 59.796 47.826 4.39 0.00 42.01 3.50
3877 6441 2.781757 GGGGCCACCTTAGTTATTAGGT 59.218 50.000 4.39 0.00 45.54 3.08
3893 7183 1.524008 CTGTTTCGGTCAAAGGGGCC 61.524 60.000 0.00 0.00 0.00 5.80
3898 7188 0.234884 GCGTCCTGTTTCGGTCAAAG 59.765 55.000 0.00 0.00 0.00 2.77
3899 7189 0.179067 AGCGTCCTGTTTCGGTCAAA 60.179 50.000 0.00 0.00 32.40 2.69
3900 7190 0.179067 AAGCGTCCTGTTTCGGTCAA 60.179 50.000 0.00 0.00 36.80 3.18
3901 7191 0.878523 CAAGCGTCCTGTTTCGGTCA 60.879 55.000 0.00 0.00 36.80 4.02
3902 7192 1.860078 CAAGCGTCCTGTTTCGGTC 59.140 57.895 0.00 0.00 36.80 4.79
3907 7197 1.961277 CGAGGCAAGCGTCCTGTTT 60.961 57.895 8.93 0.00 33.24 2.83
3908 7198 2.172483 ATCGAGGCAAGCGTCCTGTT 62.172 55.000 8.93 0.00 33.24 3.16
3912 7202 1.424493 CTGAATCGAGGCAAGCGTCC 61.424 60.000 8.93 0.00 0.00 4.79
3914 7204 0.176680 ATCTGAATCGAGGCAAGCGT 59.823 50.000 0.00 0.00 0.00 5.07
3925 7215 2.666526 GGCGGGCCGATCTGAATC 60.667 66.667 33.44 8.98 0.00 2.52
3926 7216 2.343475 ATTGGCGGGCCGATCTGAAT 62.343 55.000 33.44 15.48 35.32 2.57
3927 7217 3.042733 ATTGGCGGGCCGATCTGAA 62.043 57.895 33.44 13.79 35.32 3.02
3929 7219 3.282157 CATTGGCGGGCCGATCTG 61.282 66.667 33.44 16.55 38.11 2.90
3930 7220 4.569180 CCATTGGCGGGCCGATCT 62.569 66.667 33.44 7.60 38.11 2.75
3950 7240 4.771356 CTCGAAAGCCGCCGTCGA 62.771 66.667 13.59 13.59 41.22 4.20
3951 7241 4.771356 TCTCGAAAGCCGCCGTCG 62.771 66.667 6.91 6.91 38.37 5.12
3952 7242 2.431942 TTCTCGAAAGCCGCCGTC 60.432 61.111 0.00 0.00 38.37 4.79
3954 7244 3.188786 CCTTCTCGAAAGCCGCCG 61.189 66.667 0.00 0.00 38.37 6.46
3955 7245 2.820037 CCCTTCTCGAAAGCCGCC 60.820 66.667 0.00 0.00 38.37 6.13
3957 7247 1.912371 GCAACCCTTCTCGAAAGCCG 61.912 60.000 0.00 0.00 40.25 5.52
3958 7248 1.587043 GGCAACCCTTCTCGAAAGCC 61.587 60.000 0.00 0.00 0.00 4.35
3959 7249 1.876664 GGCAACCCTTCTCGAAAGC 59.123 57.895 0.00 0.00 0.00 3.51
3960 7250 1.298859 CCGGCAACCCTTCTCGAAAG 61.299 60.000 0.00 0.00 0.00 2.62
3961 7251 1.302192 CCGGCAACCCTTCTCGAAA 60.302 57.895 0.00 0.00 0.00 3.46
3962 7252 1.550130 ATCCGGCAACCCTTCTCGAA 61.550 55.000 0.00 0.00 0.00 3.71
3965 7255 2.115291 GCATCCGGCAACCCTTCTC 61.115 63.158 0.00 0.00 43.97 2.87
3966 7256 2.044946 GCATCCGGCAACCCTTCT 60.045 61.111 0.00 0.00 43.97 2.85
3999 7289 3.264897 GTACCAGCAGCGCATCGG 61.265 66.667 11.47 6.92 0.00 4.18
4000 7290 2.509111 TGTACCAGCAGCGCATCG 60.509 61.111 11.47 0.00 0.00 3.84
4001 7291 0.740868 TTCTGTACCAGCAGCGCATC 60.741 55.000 11.47 0.00 36.49 3.91
4003 7293 1.374631 CTTCTGTACCAGCAGCGCA 60.375 57.895 11.47 0.00 36.49 6.09
4004 7294 2.103042 CCTTCTGTACCAGCAGCGC 61.103 63.158 0.00 0.00 36.49 5.92
4005 7295 1.016130 CACCTTCTGTACCAGCAGCG 61.016 60.000 0.00 0.00 36.49 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.