Multiple sequence alignment - TraesCS1A01G422400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G422400 chr1A 100.000 8572 0 0 1 8572 577919629 577928200 0.000000e+00 15830.0
1 TraesCS1A01G422400 chr1A 81.065 169 21 5 8404 8569 577936142 577936302 3.250000e-24 124.0
2 TraesCS1A01G422400 chr1D 96.334 6547 178 31 1527 8026 481413906 481420437 0.000000e+00 10704.0
3 TraesCS1A01G422400 chr1D 85.371 458 32 13 8136 8572 481420470 481420913 7.900000e-120 442.0
4 TraesCS1A01G422400 chr1B 95.066 6627 231 51 582 7187 669895524 669902075 0.000000e+00 10338.0
5 TraesCS1A01G422400 chr1B 84.474 1198 79 44 7424 8572 669902076 669903215 0.000000e+00 1083.0
6 TraesCS1A01G422400 chr1B 84.600 500 50 19 91 580 669894452 669894934 1.010000e-128 472.0
7 TraesCS1A01G422400 chr1B 77.928 222 30 10 8352 8569 669912146 669912352 4.200000e-23 121.0
8 TraesCS1A01G422400 chr2B 91.838 1752 81 28 1019 2754 335374221 335375926 0.000000e+00 2386.0
9 TraesCS1A01G422400 chr2B 95.359 237 10 1 1830 2065 657784819 657784583 8.120000e-100 375.0
10 TraesCS1A01G422400 chr6D 100.000 28 0 0 5483 5510 413800387 413800360 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G422400 chr1A 577919629 577928200 8571 False 15830.000000 15830 100.000000 1 8572 1 chr1A.!!$F1 8571
1 TraesCS1A01G422400 chr1D 481413906 481420913 7007 False 5573.000000 10704 90.852500 1527 8572 2 chr1D.!!$F1 7045
2 TraesCS1A01G422400 chr1B 669894452 669903215 8763 False 3964.333333 10338 88.046667 91 8572 3 chr1B.!!$F2 8481
3 TraesCS1A01G422400 chr2B 335374221 335375926 1705 False 2386.000000 2386 91.838000 1019 2754 1 chr2B.!!$F1 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 1301 0.389817 TCGACAAGGTCAAGCCGATG 60.390 55.000 0.00 0.0 43.70 3.84 F
1229 1830 0.589223 GCCGTGATTTTGGTTGACGA 59.411 50.000 0.00 0.0 31.71 4.20 F
1230 1831 1.399727 GCCGTGATTTTGGTTGACGAG 60.400 52.381 0.00 0.0 31.71 4.18 F
2898 3535 1.139989 ACTGTTTGTGAGACATCGCG 58.860 50.000 0.00 0.0 38.88 5.87 F
3734 4386 0.257039 ATTGGATGTCAGCTCCCACC 59.743 55.000 0.00 0.0 31.32 4.61 F
4471 5123 0.374758 CCTCATCATTGTCGTTGGCG 59.625 55.000 0.00 0.0 39.92 5.69 F
4980 5632 1.565305 CTCCGAAGCATTTCCTCTCG 58.435 55.000 0.00 0.0 0.00 4.04 F
6573 7229 0.175531 GTTGCCAAGTGCCAACAACT 59.824 50.000 0.55 0.0 40.16 3.16 F
6895 7551 0.240945 CCCGTTGGTTTGCTGATGTC 59.759 55.000 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2614 2.582687 CGGAAGTCGTAGTCAAGTGAC 58.417 52.381 3.12 3.12 45.08 3.67 R
2816 3453 0.035317 TGTGTTGACCTAGCAGGCTG 59.965 55.000 10.94 10.94 39.63 4.85 R
2998 3635 1.816835 CATGTTGCCAAGATGCTCAGT 59.183 47.619 1.25 0.00 0.00 3.41 R
4865 5517 0.318120 GCACAGAAAACCACATGGGG 59.682 55.000 14.08 14.08 42.91 4.96 R
5705 6357 2.686915 GCACCCCTCTCATTTGATCTTG 59.313 50.000 0.00 0.00 0.00 3.02 R
5829 6481 0.467844 AACCACCATCAACAGCAGCA 60.468 50.000 0.00 0.00 0.00 4.41 R
6735 7391 1.133668 AGGAGCAGCTGGTTTTCTGTT 60.134 47.619 21.18 0.00 33.09 3.16 R
7523 8183 0.034059 CTTCGTGCCACTTCCTCACT 59.966 55.000 0.00 0.00 0.00 3.41 R
8411 9133 0.162507 TCGTCGTCGTCTTCGTCTTC 59.837 55.000 1.33 0.00 38.33 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.698008 TTGCATGATAATCTTCGAATTGGT 57.302 33.333 0.00 0.00 0.00 3.67
24 25 6.698008 TGCATGATAATCTTCGAATTGGTT 57.302 33.333 0.00 0.00 0.00 3.67
25 26 6.497437 TGCATGATAATCTTCGAATTGGTTG 58.503 36.000 0.00 0.00 0.00 3.77
26 27 6.095300 TGCATGATAATCTTCGAATTGGTTGT 59.905 34.615 0.00 0.00 0.00 3.32
27 28 6.415867 GCATGATAATCTTCGAATTGGTTGTG 59.584 38.462 0.00 0.00 0.00 3.33
28 29 7.475015 CATGATAATCTTCGAATTGGTTGTGT 58.525 34.615 0.00 0.00 0.00 3.72
29 30 7.447374 TGATAATCTTCGAATTGGTTGTGTT 57.553 32.000 0.00 0.00 0.00 3.32
30 31 7.881142 TGATAATCTTCGAATTGGTTGTGTTT 58.119 30.769 0.00 0.00 0.00 2.83
31 32 8.356657 TGATAATCTTCGAATTGGTTGTGTTTT 58.643 29.630 0.00 0.00 0.00 2.43
32 33 9.191995 GATAATCTTCGAATTGGTTGTGTTTTT 57.808 29.630 0.00 0.00 0.00 1.94
33 34 7.463469 AATCTTCGAATTGGTTGTGTTTTTC 57.537 32.000 0.00 0.00 0.00 2.29
34 35 6.202516 TCTTCGAATTGGTTGTGTTTTTCT 57.797 33.333 0.00 0.00 0.00 2.52
35 36 7.323049 TCTTCGAATTGGTTGTGTTTTTCTA 57.677 32.000 0.00 0.00 0.00 2.10
36 37 7.763356 TCTTCGAATTGGTTGTGTTTTTCTAA 58.237 30.769 0.00 0.00 0.00 2.10
37 38 7.913297 TCTTCGAATTGGTTGTGTTTTTCTAAG 59.087 33.333 0.00 0.00 0.00 2.18
38 39 6.500041 TCGAATTGGTTGTGTTTTTCTAAGG 58.500 36.000 0.00 0.00 0.00 2.69
39 40 6.095720 TCGAATTGGTTGTGTTTTTCTAAGGT 59.904 34.615 0.00 0.00 0.00 3.50
40 41 6.754675 CGAATTGGTTGTGTTTTTCTAAGGTT 59.245 34.615 0.00 0.00 0.00 3.50
41 42 7.276878 CGAATTGGTTGTGTTTTTCTAAGGTTT 59.723 33.333 0.00 0.00 0.00 3.27
42 43 8.856153 AATTGGTTGTGTTTTTCTAAGGTTTT 57.144 26.923 0.00 0.00 0.00 2.43
43 44 8.856153 ATTGGTTGTGTTTTTCTAAGGTTTTT 57.144 26.923 0.00 0.00 0.00 1.94
44 45 7.659652 TGGTTGTGTTTTTCTAAGGTTTTTG 57.340 32.000 0.00 0.00 0.00 2.44
45 46 6.651225 TGGTTGTGTTTTTCTAAGGTTTTTGG 59.349 34.615 0.00 0.00 0.00 3.28
46 47 6.402766 GGTTGTGTTTTTCTAAGGTTTTTGGC 60.403 38.462 0.00 0.00 0.00 4.52
47 48 6.043854 TGTGTTTTTCTAAGGTTTTTGGCT 57.956 33.333 0.00 0.00 0.00 4.75
48 49 6.468543 TGTGTTTTTCTAAGGTTTTTGGCTT 58.531 32.000 0.00 0.00 0.00 4.35
49 50 7.612677 TGTGTTTTTCTAAGGTTTTTGGCTTA 58.387 30.769 0.00 0.00 0.00 3.09
50 51 7.762159 TGTGTTTTTCTAAGGTTTTTGGCTTAG 59.238 33.333 0.00 0.00 0.00 2.18
51 52 7.762615 GTGTTTTTCTAAGGTTTTTGGCTTAGT 59.237 33.333 0.00 0.00 32.85 2.24
52 53 8.315482 TGTTTTTCTAAGGTTTTTGGCTTAGTT 58.685 29.630 0.00 0.00 32.85 2.24
53 54 9.158233 GTTTTTCTAAGGTTTTTGGCTTAGTTT 57.842 29.630 0.00 0.00 32.85 2.66
54 55 9.727859 TTTTTCTAAGGTTTTTGGCTTAGTTTT 57.272 25.926 0.00 0.00 32.85 2.43
55 56 8.936070 TTTCTAAGGTTTTTGGCTTAGTTTTC 57.064 30.769 0.00 0.00 32.85 2.29
56 57 7.891498 TCTAAGGTTTTTGGCTTAGTTTTCT 57.109 32.000 0.00 0.00 32.85 2.52
57 58 8.301252 TCTAAGGTTTTTGGCTTAGTTTTCTT 57.699 30.769 0.00 0.00 32.85 2.52
58 59 9.411189 TCTAAGGTTTTTGGCTTAGTTTTCTTA 57.589 29.630 0.00 0.00 32.85 2.10
65 66 9.465985 TTTTTGGCTTAGTTTTCTTATTAACCG 57.534 29.630 0.00 0.00 0.00 4.44
66 67 6.746745 TGGCTTAGTTTTCTTATTAACCGG 57.253 37.500 0.00 0.00 0.00 5.28
67 68 6.474630 TGGCTTAGTTTTCTTATTAACCGGA 58.525 36.000 9.46 0.00 0.00 5.14
68 69 6.372381 TGGCTTAGTTTTCTTATTAACCGGAC 59.628 38.462 9.46 0.00 0.00 4.79
69 70 6.183360 GGCTTAGTTTTCTTATTAACCGGACC 60.183 42.308 9.46 0.00 0.00 4.46
70 71 6.372381 GCTTAGTTTTCTTATTAACCGGACCA 59.628 38.462 9.46 0.00 0.00 4.02
71 72 7.094677 GCTTAGTTTTCTTATTAACCGGACCAA 60.095 37.037 9.46 0.00 0.00 3.67
72 73 8.866970 TTAGTTTTCTTATTAACCGGACCAAT 57.133 30.769 9.46 6.82 0.00 3.16
73 74 9.956640 TTAGTTTTCTTATTAACCGGACCAATA 57.043 29.630 9.46 5.75 0.00 1.90
75 76 9.117183 AGTTTTCTTATTAACCGGACCAATATC 57.883 33.333 9.46 0.00 0.00 1.63
76 77 8.895737 GTTTTCTTATTAACCGGACCAATATCA 58.104 33.333 9.46 0.00 0.00 2.15
77 78 9.635404 TTTTCTTATTAACCGGACCAATATCAT 57.365 29.630 9.46 0.00 0.00 2.45
78 79 8.615878 TTCTTATTAACCGGACCAATATCATG 57.384 34.615 9.46 0.00 0.00 3.07
79 80 6.653320 TCTTATTAACCGGACCAATATCATGC 59.347 38.462 9.46 0.00 0.00 4.06
80 81 2.727123 AACCGGACCAATATCATGCA 57.273 45.000 9.46 0.00 0.00 3.96
81 82 2.727123 ACCGGACCAATATCATGCAA 57.273 45.000 9.46 0.00 0.00 4.08
82 83 2.575532 ACCGGACCAATATCATGCAAG 58.424 47.619 9.46 0.00 0.00 4.01
83 84 2.172505 ACCGGACCAATATCATGCAAGA 59.827 45.455 9.46 0.00 0.00 3.02
84 85 2.810274 CCGGACCAATATCATGCAAGAG 59.190 50.000 0.00 0.00 0.00 2.85
85 86 2.225019 CGGACCAATATCATGCAAGAGC 59.775 50.000 0.00 0.00 42.57 4.09
97 98 2.056094 GCAAGAGCACAATGTGAACC 57.944 50.000 18.66 4.85 41.58 3.62
98 99 1.337703 GCAAGAGCACAATGTGAACCA 59.662 47.619 18.66 0.00 41.58 3.67
99 100 2.223782 GCAAGAGCACAATGTGAACCAA 60.224 45.455 18.66 0.00 41.58 3.67
100 101 3.737663 GCAAGAGCACAATGTGAACCAAA 60.738 43.478 18.66 0.00 41.58 3.28
101 102 3.996150 AGAGCACAATGTGAACCAAAG 57.004 42.857 18.66 0.00 35.23 2.77
102 103 2.624838 AGAGCACAATGTGAACCAAAGG 59.375 45.455 18.66 0.00 35.23 3.11
103 104 1.069049 AGCACAATGTGAACCAAAGGC 59.931 47.619 18.66 0.00 35.23 4.35
104 105 1.202510 GCACAATGTGAACCAAAGGCA 60.203 47.619 18.66 0.00 35.23 4.75
105 106 2.548493 GCACAATGTGAACCAAAGGCAT 60.548 45.455 18.66 0.00 35.23 4.40
106 107 3.305950 GCACAATGTGAACCAAAGGCATA 60.306 43.478 18.66 0.00 35.23 3.14
107 108 4.621274 GCACAATGTGAACCAAAGGCATAT 60.621 41.667 18.66 0.00 35.23 1.78
185 186 9.965824 TTCAAAGTCAATTTCTTCCTATTTGAC 57.034 29.630 6.09 6.09 44.00 3.18
186 187 8.576442 TCAAAGTCAATTTCTTCCTATTTGACC 58.424 33.333 9.72 0.00 44.48 4.02
187 188 8.579863 CAAAGTCAATTTCTTCCTATTTGACCT 58.420 33.333 9.72 0.00 44.48 3.85
188 189 9.807921 AAAGTCAATTTCTTCCTATTTGACCTA 57.192 29.630 9.72 0.00 44.48 3.08
189 190 9.807921 AAGTCAATTTCTTCCTATTTGACCTAA 57.192 29.630 9.72 0.00 44.48 2.69
190 191 9.232473 AGTCAATTTCTTCCTATTTGACCTAAC 57.768 33.333 9.72 0.00 44.48 2.34
191 192 9.232473 GTCAATTTCTTCCTATTTGACCTAACT 57.768 33.333 0.00 0.00 39.99 2.24
192 193 9.231297 TCAATTTCTTCCTATTTGACCTAACTG 57.769 33.333 0.00 0.00 0.00 3.16
193 194 8.462016 CAATTTCTTCCTATTTGACCTAACTGG 58.538 37.037 0.00 0.00 42.93 4.00
194 195 5.099042 TCTTCCTATTTGACCTAACTGGC 57.901 43.478 0.00 0.00 40.22 4.85
195 196 4.783227 TCTTCCTATTTGACCTAACTGGCT 59.217 41.667 0.00 0.00 40.22 4.75
196 197 5.962031 TCTTCCTATTTGACCTAACTGGCTA 59.038 40.000 0.00 0.00 40.22 3.93
197 198 6.442564 TCTTCCTATTTGACCTAACTGGCTAA 59.557 38.462 0.00 0.00 40.22 3.09
198 199 5.985911 TCCTATTTGACCTAACTGGCTAAC 58.014 41.667 0.00 0.00 40.22 2.34
199 200 5.724854 TCCTATTTGACCTAACTGGCTAACT 59.275 40.000 0.00 0.00 40.22 2.24
200 201 6.214819 TCCTATTTGACCTAACTGGCTAACTT 59.785 38.462 0.00 0.00 40.22 2.66
201 202 7.400915 TCCTATTTGACCTAACTGGCTAACTTA 59.599 37.037 0.00 0.00 40.22 2.24
202 203 7.494952 CCTATTTGACCTAACTGGCTAACTTAC 59.505 40.741 0.00 0.00 40.22 2.34
203 204 5.811796 TTGACCTAACTGGCTAACTTACA 57.188 39.130 0.00 0.00 40.22 2.41
204 205 5.401531 TGACCTAACTGGCTAACTTACAG 57.598 43.478 0.00 0.00 40.22 2.74
205 206 5.081728 TGACCTAACTGGCTAACTTACAGA 58.918 41.667 0.00 0.00 40.22 3.41
206 207 5.720041 TGACCTAACTGGCTAACTTACAGAT 59.280 40.000 0.00 0.00 40.22 2.90
210 211 8.258708 ACCTAACTGGCTAACTTACAGATAAAG 58.741 37.037 0.00 0.00 40.22 1.85
281 283 4.692625 CGTCATTTTCAGGACTCATTCTGT 59.307 41.667 0.00 0.00 33.13 3.41
308 310 3.342627 CGCTTTCGGTGCCGTTCA 61.343 61.111 10.60 0.00 40.74 3.18
320 322 3.359194 CCGTTCAGAGAGGCATCAG 57.641 57.895 0.00 0.00 0.00 2.90
325 327 4.437239 CGTTCAGAGAGGCATCAGTTTAT 58.563 43.478 0.00 0.00 0.00 1.40
363 366 6.602009 GCAACTACCAAACCATATTCCTACTT 59.398 38.462 0.00 0.00 0.00 2.24
384 390 6.711277 ACTTAGTGATGCATTCTTGGACTTA 58.289 36.000 0.00 0.00 0.00 2.24
393 399 5.716228 TGCATTCTTGGACTTATTGGACAAT 59.284 36.000 2.80 2.80 34.93 2.71
401 407 5.473162 TGGACTTATTGGACAATGAACAGTG 59.527 40.000 7.76 0.74 32.50 3.66
406 412 7.233348 ACTTATTGGACAATGAACAGTGGAAAT 59.767 33.333 7.76 6.07 32.50 2.17
418 424 6.756542 TGAACAGTGGAAATGAGTACGATATG 59.243 38.462 0.00 0.00 34.17 1.78
420 426 6.042777 ACAGTGGAAATGAGTACGATATGTG 58.957 40.000 0.00 0.00 34.17 3.21
422 428 7.147966 ACAGTGGAAATGAGTACGATATGTGTA 60.148 37.037 0.00 0.00 34.17 2.90
424 430 6.420008 GTGGAAATGAGTACGATATGTGTACC 59.580 42.308 9.97 0.00 42.46 3.34
426 432 6.420008 GGAAATGAGTACGATATGTGTACCAC 59.580 42.308 9.97 6.84 42.46 4.16
427 433 4.906065 TGAGTACGATATGTGTACCACC 57.094 45.455 9.97 3.47 42.46 4.61
428 434 3.313249 TGAGTACGATATGTGTACCACCG 59.687 47.826 9.97 0.00 42.46 4.94
429 435 3.544684 AGTACGATATGTGTACCACCGA 58.455 45.455 9.97 0.00 42.46 4.69
431 437 4.581824 AGTACGATATGTGTACCACCGAAT 59.418 41.667 9.97 0.00 42.46 3.34
432 438 4.395959 ACGATATGTGTACCACCGAATT 57.604 40.909 0.00 0.00 32.73 2.17
434 440 5.284079 ACGATATGTGTACCACCGAATTAC 58.716 41.667 0.00 0.00 32.73 1.89
435 441 5.163530 ACGATATGTGTACCACCGAATTACA 60.164 40.000 0.00 0.00 32.73 2.41
436 442 5.401376 CGATATGTGTACCACCGAATTACAG 59.599 44.000 0.00 0.00 32.73 2.74
449 455 6.199154 CACCGAATTACAGATGTGTCTATGTC 59.801 42.308 0.00 0.00 38.19 3.06
450 456 6.096987 ACCGAATTACAGATGTGTCTATGTCT 59.903 38.462 0.00 0.00 38.19 3.41
462 468 2.037251 GTCTATGTCTGTGTGTGGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
470 476 1.961394 TGTGTGTGGTGGTCTAGACTC 59.039 52.381 21.88 14.69 0.00 3.36
471 477 1.961394 GTGTGTGGTGGTCTAGACTCA 59.039 52.381 21.88 15.01 0.00 3.41
472 478 1.961394 TGTGTGGTGGTCTAGACTCAC 59.039 52.381 24.80 24.80 34.18 3.51
492 498 9.486857 GACTCACAAGTTTAAGTTTCACTAAAC 57.513 33.333 0.00 0.00 39.66 2.01
526 533 9.694137 TTAAGTTTAAATTCAAAATACGGGTGG 57.306 29.630 0.00 0.00 0.00 4.61
531 538 3.651803 TTCAAAATACGGGTGGCAAAG 57.348 42.857 0.00 0.00 0.00 2.77
545 552 4.202151 GGTGGCAAAGATTTGTGAGAAACT 60.202 41.667 7.12 0.00 40.24 2.66
549 556 4.848299 GCAAAGATTTGTGAGAAACTAGCG 59.152 41.667 7.12 0.00 40.24 4.26
550 557 5.334105 GCAAAGATTTGTGAGAAACTAGCGA 60.334 40.000 7.12 0.00 40.24 4.93
580 587 8.091449 AGCTGGTCTAGTTTATGCAAGTATATC 58.909 37.037 0.00 0.00 0.00 1.63
581 588 7.872993 GCTGGTCTAGTTTATGCAAGTATATCA 59.127 37.037 0.00 0.00 0.00 2.15
605 1200 3.734463 TGGTGTAAGTCGCTTCAAATCA 58.266 40.909 0.00 0.00 0.00 2.57
624 1219 4.952071 TCAATTCAAAGGTTCAATGGCA 57.048 36.364 0.00 0.00 0.00 4.92
626 1221 4.344679 TCAATTCAAAGGTTCAATGGCAGT 59.655 37.500 0.00 0.00 0.00 4.40
631 1226 2.664402 AGGTTCAATGGCAGTGACTT 57.336 45.000 18.25 6.72 0.00 3.01
632 1227 2.949447 AGGTTCAATGGCAGTGACTTT 58.051 42.857 18.25 2.80 0.00 2.66
638 1233 2.283145 ATGGCAGTGACTTTTGCTCT 57.717 45.000 0.00 0.00 40.15 4.09
643 1238 1.140312 AGTGACTTTTGCTCTGGGGA 58.860 50.000 0.00 0.00 0.00 4.81
644 1239 1.494721 AGTGACTTTTGCTCTGGGGAA 59.505 47.619 0.00 0.00 0.00 3.97
647 1242 2.708861 TGACTTTTGCTCTGGGGAACTA 59.291 45.455 0.00 0.00 0.00 2.24
655 1250 3.105283 GCTCTGGGGAACTAGTCCTTAA 58.895 50.000 0.00 0.00 46.92 1.85
656 1251 3.118702 GCTCTGGGGAACTAGTCCTTAAC 60.119 52.174 0.00 0.00 46.92 2.01
660 1255 1.551883 GGGAACTAGTCCTTAACGGCA 59.448 52.381 0.00 0.00 46.92 5.69
676 1271 2.352503 GGCACGTGCATGAAGAATTT 57.647 45.000 38.60 0.00 44.36 1.82
677 1272 2.253603 GGCACGTGCATGAAGAATTTC 58.746 47.619 38.60 15.36 44.36 2.17
678 1273 2.095059 GGCACGTGCATGAAGAATTTCT 60.095 45.455 38.60 0.00 44.36 2.52
679 1274 2.912967 GCACGTGCATGAAGAATTTCTG 59.087 45.455 34.52 0.00 41.59 3.02
680 1275 3.495193 CACGTGCATGAAGAATTTCTGG 58.505 45.455 14.17 0.00 34.31 3.86
681 1276 3.058016 CACGTGCATGAAGAATTTCTGGT 60.058 43.478 14.17 0.00 34.31 4.00
682 1277 3.569701 ACGTGCATGAAGAATTTCTGGTT 59.430 39.130 14.17 0.00 34.31 3.67
683 1278 3.916172 CGTGCATGAAGAATTTCTGGTTG 59.084 43.478 0.00 0.00 34.31 3.77
685 1280 4.919754 GTGCATGAAGAATTTCTGGTTGTC 59.080 41.667 0.00 0.00 34.31 3.18
686 1281 4.161333 GCATGAAGAATTTCTGGTTGTCG 58.839 43.478 0.00 0.00 34.31 4.35
687 1282 4.320494 GCATGAAGAATTTCTGGTTGTCGT 60.320 41.667 0.00 0.00 34.31 4.34
688 1283 5.385617 CATGAAGAATTTCTGGTTGTCGTC 58.614 41.667 0.00 0.00 34.31 4.20
689 1284 3.493129 TGAAGAATTTCTGGTTGTCGTCG 59.507 43.478 0.00 0.00 34.31 5.12
691 1286 3.057734 AGAATTTCTGGTTGTCGTCGAC 58.942 45.455 18.51 18.51 0.00 4.20
692 1287 2.519377 ATTTCTGGTTGTCGTCGACA 57.481 45.000 23.70 23.70 41.09 4.35
700 1295 1.847818 TTGTCGTCGACAAGGTCAAG 58.152 50.000 31.49 0.00 45.88 3.02
702 1297 1.006571 TCGTCGACAAGGTCAAGCC 60.007 57.895 17.16 0.00 32.09 4.35
703 1298 2.372690 CGTCGACAAGGTCAAGCCG 61.373 63.158 17.16 0.00 43.70 5.52
704 1299 1.006571 GTCGACAAGGTCAAGCCGA 60.007 57.895 11.55 0.00 43.70 5.54
705 1300 0.389948 GTCGACAAGGTCAAGCCGAT 60.390 55.000 11.55 0.00 43.70 4.18
706 1301 0.389817 TCGACAAGGTCAAGCCGATG 60.390 55.000 0.00 0.00 43.70 3.84
707 1302 1.361668 CGACAAGGTCAAGCCGATGG 61.362 60.000 0.00 0.00 43.70 3.51
708 1303 1.002134 ACAAGGTCAAGCCGATGGG 60.002 57.895 0.00 0.00 43.70 4.00
721 1316 1.097547 CGATGGGCTCAGGCGAAATT 61.098 55.000 5.77 0.00 39.81 1.82
735 1330 6.655003 TCAGGCGAAATTGATTTAGACTTCTT 59.345 34.615 2.64 0.00 38.46 2.52
893 1491 2.664085 ACCGCAACAGAAAACAAAAACG 59.336 40.909 0.00 0.00 0.00 3.60
915 1513 1.302192 CTCCAGTCGCCCGGAAAAA 60.302 57.895 0.73 0.00 0.00 1.94
944 1542 1.670083 CCGTCCCCTTTCCGAACAC 60.670 63.158 0.00 0.00 0.00 3.32
1127 1728 0.895530 TTCCTCATGTCCCGTGAGTC 59.104 55.000 11.39 0.00 43.64 3.36
1134 1735 2.053277 GTCCCGTGAGTCCCCTCTC 61.053 68.421 0.00 0.00 38.61 3.20
1155 1756 3.012722 CCCCAAACCCTAGGGCGA 61.013 66.667 28.88 0.00 44.06 5.54
1157 1758 2.298661 CCCAAACCCTAGGGCGACT 61.299 63.158 28.88 5.07 38.44 4.18
1158 1759 1.221021 CCAAACCCTAGGGCGACTC 59.779 63.158 28.88 0.00 39.32 3.36
1160 1761 1.080538 AAACCCTAGGGCGACTCCT 59.919 57.895 28.88 2.89 40.79 3.69
1161 1762 0.976590 AAACCCTAGGGCGACTCCTC 60.977 60.000 28.88 0.00 38.30 3.71
1162 1763 2.907917 CCCTAGGGCGACTCCTCG 60.908 72.222 16.90 0.00 43.28 4.63
1163 1764 2.192443 CCTAGGGCGACTCCTCGA 59.808 66.667 0.00 0.00 43.06 4.04
1168 1769 4.176851 GGCGACTCCTCGACCGTC 62.177 72.222 0.00 0.00 42.75 4.79
1169 1770 4.176851 GCGACTCCTCGACCGTCC 62.177 72.222 0.00 0.00 43.06 4.79
1170 1771 3.507009 CGACTCCTCGACCGTCCC 61.507 72.222 0.00 0.00 43.06 4.46
1171 1772 3.139469 GACTCCTCGACCGTCCCC 61.139 72.222 0.00 0.00 0.00 4.81
1172 1773 4.755507 ACTCCTCGACCGTCCCCC 62.756 72.222 0.00 0.00 0.00 5.40
1220 1821 4.398598 GGTGCGCGCCGTGATTTT 62.399 61.111 30.77 0.00 0.00 1.82
1224 1825 2.254051 CGCGCCGTGATTTTGGTT 59.746 55.556 0.00 0.00 0.00 3.67
1225 1826 2.080062 CGCGCCGTGATTTTGGTTG 61.080 57.895 0.00 0.00 0.00 3.77
1226 1827 1.284408 GCGCCGTGATTTTGGTTGA 59.716 52.632 0.00 0.00 0.00 3.18
1227 1828 1.001745 GCGCCGTGATTTTGGTTGAC 61.002 55.000 0.00 0.00 0.00 3.18
1228 1829 0.724453 CGCCGTGATTTTGGTTGACG 60.724 55.000 0.00 0.00 0.00 4.35
1229 1830 0.589223 GCCGTGATTTTGGTTGACGA 59.411 50.000 0.00 0.00 31.71 4.20
1230 1831 1.399727 GCCGTGATTTTGGTTGACGAG 60.400 52.381 0.00 0.00 31.71 4.18
1231 1832 1.399727 CCGTGATTTTGGTTGACGAGC 60.400 52.381 0.00 0.00 31.71 5.03
1232 1833 1.399727 CGTGATTTTGGTTGACGAGCC 60.400 52.381 0.00 0.00 31.71 4.70
1306 1914 2.124487 CGGGCGCTAATTTGGGGA 60.124 61.111 7.64 0.00 0.00 4.81
1380 1988 4.213059 GTGTTGTAATTTGTTGCATTGGGG 59.787 41.667 0.00 0.00 0.00 4.96
1385 1993 4.637387 AATTTGTTGCATTGGGGATTGA 57.363 36.364 0.00 0.00 0.00 2.57
1412 2021 2.225547 TGGACTTAGCCCTGAGTAGGTT 60.226 50.000 0.00 0.00 42.96 3.50
1731 2356 5.662674 AAAGACAAGGAGTATACGAGCTT 57.337 39.130 0.00 0.00 0.00 3.74
1738 2363 3.954904 AGGAGTATACGAGCTTGACATGT 59.045 43.478 8.31 0.00 0.00 3.21
1740 2365 5.008811 AGGAGTATACGAGCTTGACATGTAC 59.991 44.000 8.31 0.00 0.00 2.90
1933 2563 2.216898 GCAGTGACAAGCTCTTCAGTT 58.783 47.619 0.00 0.00 0.00 3.16
1984 2614 4.744570 TGATAGTTCTGTTTCGCTACCTG 58.255 43.478 0.00 0.00 0.00 4.00
2017 2647 2.251893 GACTTCCGTAGAAAGAGCACG 58.748 52.381 0.00 0.00 35.50 5.34
2092 2723 3.876309 TTGAGTAAACCTTCCCTTGCT 57.124 42.857 0.00 0.00 0.00 3.91
2356 2987 8.143193 AGTTTGTTTTATCTCATCAAATGCACA 58.857 29.630 0.00 0.00 32.16 4.57
2369 3000 5.527951 TCAAATGCACAAACAGTTGTATCC 58.472 37.500 4.86 0.00 46.47 2.59
2385 3016 7.587757 CAGTTGTATCCTTTTCTTTTCAGAACG 59.412 37.037 0.00 0.00 38.86 3.95
2392 3023 5.394224 TTTTCTTTTCAGAACGTTGGGTT 57.606 34.783 5.00 0.00 38.86 4.11
2407 3038 4.984161 CGTTGGGTTTCTTACGAAGACTTA 59.016 41.667 0.00 0.00 37.23 2.24
2408 3039 5.107722 CGTTGGGTTTCTTACGAAGACTTAC 60.108 44.000 0.00 0.00 37.23 2.34
2546 3182 2.222027 CTGAACTGAAACTCGCCCTTT 58.778 47.619 0.00 0.00 0.00 3.11
2607 3243 5.882557 CCAGTGCTGAATACAAGGTAAAGAT 59.117 40.000 0.02 0.00 0.00 2.40
2699 3335 1.955778 TGGCACCTTGATGAACACTTG 59.044 47.619 0.00 0.00 0.00 3.16
2705 3341 4.030216 ACCTTGATGAACACTTGGGTTTT 58.970 39.130 0.00 0.00 0.00 2.43
2758 3394 4.129148 GGCTCCTTTCCCCGGCAT 62.129 66.667 0.00 0.00 0.00 4.40
2782 3418 3.982576 TGCATCATAAGCTTCATGCAG 57.017 42.857 25.63 14.52 45.19 4.41
2807 3444 9.603189 AGTACTTATGTAGGATAATTAGGTGCT 57.397 33.333 0.00 0.00 0.00 4.40
2816 3453 4.156739 GGATAATTAGGTGCTGCTATTGCC 59.843 45.833 0.00 0.00 38.71 4.52
2892 3529 4.515191 TCCTGCATAAACTGTTTGTGAGAC 59.485 41.667 27.25 13.99 34.14 3.36
2895 3532 6.000891 TGCATAAACTGTTTGTGAGACATC 57.999 37.500 27.25 12.85 34.14 3.06
2898 3535 1.139989 ACTGTTTGTGAGACATCGCG 58.860 50.000 0.00 0.00 38.88 5.87
2908 3545 2.263077 GAGACATCGCGTTCACATCTT 58.737 47.619 5.77 0.00 0.00 2.40
2944 3581 8.661257 TGGTGTATTTATATCTTTGACAACACG 58.339 33.333 0.00 0.00 35.51 4.49
2957 3594 5.066968 TGACAACACGCACTATCTCATAA 57.933 39.130 0.00 0.00 0.00 1.90
2998 3635 6.260714 AGCACTTGCATATGATTATTGACGAA 59.739 34.615 6.97 0.00 45.16 3.85
2999 3636 6.358030 GCACTTGCATATGATTATTGACGAAC 59.642 38.462 6.97 0.00 41.59 3.95
3033 3670 3.551890 GCAACATGTCTGTATCCGTGTAG 59.448 47.826 0.00 0.00 33.36 2.74
3035 3672 3.362706 ACATGTCTGTATCCGTGTAGGT 58.637 45.455 0.00 0.00 35.98 3.08
3052 3689 9.355215 CCGTGTAGGTATCAAAGTTATATGATC 57.645 37.037 0.00 0.00 37.46 2.92
3143 3780 6.240894 TCAATCACAGTAAAGCCTGAGAATT 58.759 36.000 0.00 0.00 36.01 2.17
3254 3891 7.609532 GGTAGTAACATACCGTATCTGGTCTAT 59.390 40.741 0.00 0.00 42.62 1.98
3281 3918 4.816385 ACATGGTATTTTCTAGTGCCATCG 59.184 41.667 0.00 0.00 38.53 3.84
3585 4222 6.515696 GCCCTTAATTCTTCTATGGTCAATGC 60.516 42.308 0.00 0.00 0.00 3.56
3617 4254 0.320421 TGAGTCAGGCAGTTTACCGC 60.320 55.000 0.00 0.00 0.00 5.68
3637 4274 2.783135 CCCAATTCCCACATCTATCCG 58.217 52.381 0.00 0.00 0.00 4.18
3657 4294 4.572985 CGGATACCGGTATTTCTGTACA 57.427 45.455 27.43 0.00 44.15 2.90
3658 4295 4.293415 CGGATACCGGTATTTCTGTACAC 58.707 47.826 27.43 11.50 44.15 2.90
3659 4296 4.625028 GGATACCGGTATTTCTGTACACC 58.375 47.826 27.43 16.44 0.00 4.16
3660 4297 4.502087 GGATACCGGTATTTCTGTACACCC 60.502 50.000 27.43 15.75 0.00 4.61
3661 4298 1.556451 ACCGGTATTTCTGTACACCCC 59.444 52.381 4.49 0.00 0.00 4.95
3662 4299 1.134310 CCGGTATTTCTGTACACCCCC 60.134 57.143 0.00 0.00 0.00 5.40
3663 4300 1.555992 CGGTATTTCTGTACACCCCCA 59.444 52.381 0.00 0.00 0.00 4.96
3664 4301 2.027007 CGGTATTTCTGTACACCCCCAA 60.027 50.000 0.00 0.00 0.00 4.12
3665 4302 3.617284 GGTATTTCTGTACACCCCCAAG 58.383 50.000 0.00 0.00 0.00 3.61
3722 4374 5.008415 GGAGAGTCAGCACAAATATTGGATG 59.992 44.000 0.00 0.00 34.12 3.51
3734 4386 0.257039 ATTGGATGTCAGCTCCCACC 59.743 55.000 0.00 0.00 31.32 4.61
3783 4435 5.189736 AGCACCTTGAGAATATGTGGACTAA 59.810 40.000 0.00 0.00 0.00 2.24
3897 4549 3.795688 TCCCTTCAGCACTTCAATTCT 57.204 42.857 0.00 0.00 0.00 2.40
4217 4869 7.382218 CACTTGAAATGTCTGGTTTCCATAAAC 59.618 37.037 0.00 0.00 43.58 2.01
4258 4910 1.330306 CGAGCAAGTTGAAAATGGCG 58.670 50.000 7.16 0.00 0.00 5.69
4283 4935 3.127425 CTTCGTCAGGAAGGAAAAGGT 57.873 47.619 0.00 0.00 46.89 3.50
4367 5019 6.042143 GGTGGTGATTTTGGCATACTAAATG 58.958 40.000 0.00 0.00 35.22 2.32
4471 5123 0.374758 CCTCATCATTGTCGTTGGCG 59.625 55.000 0.00 0.00 39.92 5.69
4676 5328 4.549458 GCATGTTTGCTGTGTATTCTGTT 58.451 39.130 0.00 0.00 45.77 3.16
4802 5454 5.353394 TGCCTATACCTCGAAACAAAGAT 57.647 39.130 0.00 0.00 0.00 2.40
4865 5517 9.031360 TCGAGTATGTTAGTTGCATTCTAATTC 57.969 33.333 12.70 4.83 31.47 2.17
4878 5530 5.338300 GCATTCTAATTCCCCATGTGGTTTT 60.338 40.000 0.00 0.00 0.00 2.43
4980 5632 1.565305 CTCCGAAGCATTTCCTCTCG 58.435 55.000 0.00 0.00 0.00 4.04
5025 5677 1.925847 CGAGAGAGATGCAACTTGCTC 59.074 52.381 14.78 13.52 45.31 4.26
5058 5710 1.720781 AGGTGCATTTCTTTGCCCTT 58.279 45.000 0.00 0.00 42.06 3.95
5107 5759 7.560991 TCCATAAGTTTGAGTATTGGCATTGAT 59.439 33.333 0.00 0.00 0.00 2.57
5109 5761 9.888878 CATAAGTTTGAGTATTGGCATTGATAG 57.111 33.333 0.00 0.00 0.00 2.08
5232 5884 8.035984 TCATTACGTGTGATCCATGTTACTTTA 58.964 33.333 12.42 0.00 40.46 1.85
5340 5992 5.336150 TCTTTTGTCATGTTTGCTTTCCA 57.664 34.783 0.00 0.00 0.00 3.53
5356 6008 4.390297 GCTTTCCATAGCGATCTGTTATCC 59.610 45.833 0.00 0.00 0.00 2.59
5367 6019 5.050091 GCGATCTGTTATCCGTTCATGAAAT 60.050 40.000 10.35 2.93 0.00 2.17
5368 6020 6.511767 GCGATCTGTTATCCGTTCATGAAATT 60.512 38.462 10.35 0.00 0.00 1.82
5705 6357 8.861033 TTATTTCATGCAGTCAATTTAGATGC 57.139 30.769 0.00 0.00 37.40 3.91
5961 6613 2.890945 TCCTGAACAGAACGATCACTCA 59.109 45.455 3.19 0.00 0.00 3.41
5981 6633 9.912634 TCACTCATTTTTGATAAATTCAGGAAC 57.087 29.630 0.00 0.00 35.27 3.62
6344 6996 1.145738 ACTGACCTTGGGATTTGCACT 59.854 47.619 0.00 0.00 0.00 4.40
6573 7229 0.175531 GTTGCCAAGTGCCAACAACT 59.824 50.000 0.55 0.00 40.16 3.16
6735 7391 5.481105 GAATTTTCATGACAAAGCATCCCA 58.519 37.500 0.00 0.00 0.00 4.37
6801 7457 5.879223 AGCAGGACAAACTATCTGATTGAAG 59.121 40.000 6.11 0.00 33.41 3.02
6895 7551 0.240945 CCCGTTGGTTTGCTGATGTC 59.759 55.000 0.00 0.00 0.00 3.06
6897 7553 2.422597 CCGTTGGTTTGCTGATGTCTA 58.577 47.619 0.00 0.00 0.00 2.59
6898 7554 2.416547 CCGTTGGTTTGCTGATGTCTAG 59.583 50.000 0.00 0.00 0.00 2.43
6903 7559 4.318332 TGGTTTGCTGATGTCTAGTTCTG 58.682 43.478 0.00 0.00 0.00 3.02
6956 7613 3.066900 TCGCCTCTGTGATTTCTAGCTAC 59.933 47.826 0.00 0.00 0.00 3.58
6965 7622 8.150945 TCTGTGATTTCTAGCTACTTTTTCAGT 58.849 33.333 0.00 0.00 39.87 3.41
6986 7643 7.671302 TCAGTGTTCTTCTATTAGCTTTCAGT 58.329 34.615 0.00 0.00 0.00 3.41
7126 7783 8.455903 ACATTATTGGTGGATTCAGTTCATAG 57.544 34.615 0.00 0.00 0.00 2.23
7127 7784 6.942532 TTATTGGTGGATTCAGTTCATAGC 57.057 37.500 0.00 0.00 0.00 2.97
7149 7806 4.032104 GCGAATGAAAATCTGCCATTTCAC 59.968 41.667 3.33 0.00 45.34 3.18
7179 7836 1.598407 ACGCACATTGCCGGTTGTA 60.598 52.632 1.90 0.00 41.12 2.41
7213 7870 5.880901 TGAAAGCTCCTAGTTTTCTCCAAT 58.119 37.500 14.58 0.00 43.17 3.16
7271 7930 6.970613 TCATCTTCATCTCATTTTTGCATTCG 59.029 34.615 0.00 0.00 0.00 3.34
7350 8009 6.939163 GGAAGATCATACTGGTCATTATGCTT 59.061 38.462 0.00 3.54 27.47 3.91
7429 8089 9.987272 TGATCCTTAGACTGATATGTACAATTG 57.013 33.333 3.24 3.24 0.00 2.32
7490 8150 1.137825 CGAACTCGTGGAGCTCCTC 59.862 63.158 32.28 27.21 36.82 3.71
7550 8210 0.250467 AGTGGCACGAAGACAAGCAT 60.250 50.000 12.71 0.00 0.00 3.79
7579 8239 1.339055 CGCCCTGGACTGATTCTTTCA 60.339 52.381 0.00 0.00 0.00 2.69
7694 8354 5.739630 CAGTGTGAATACGAGTAGTTAGCAG 59.260 44.000 0.00 0.00 0.00 4.24
7788 8451 5.529800 GGTTTCCGTATATGTAATGCAGGTT 59.470 40.000 0.00 0.00 0.00 3.50
7944 8632 0.796312 CGATCGGTTCCTGGTTGTTG 59.204 55.000 7.38 0.00 0.00 3.33
7995 8689 8.522830 TGATAAGATGCTTCATGTATGTCGATA 58.477 33.333 2.07 0.00 0.00 2.92
8028 8722 6.535150 TCGTTGCTGAACATTCTAGGAAATAG 59.465 38.462 0.00 0.00 31.78 1.73
8029 8723 6.490534 GTTGCTGAACATTCTAGGAAATAGC 58.509 40.000 0.00 0.00 31.78 2.97
8030 8724 5.744171 TGCTGAACATTCTAGGAAATAGCA 58.256 37.500 0.00 0.00 35.36 3.49
8031 8725 6.359804 TGCTGAACATTCTAGGAAATAGCAT 58.640 36.000 0.00 0.00 33.10 3.79
8032 8726 6.830324 TGCTGAACATTCTAGGAAATAGCATT 59.170 34.615 0.00 0.00 33.10 3.56
8033 8727 7.137426 GCTGAACATTCTAGGAAATAGCATTG 58.863 38.462 0.00 0.00 0.00 2.82
8034 8728 7.031226 TGAACATTCTAGGAAATAGCATTGC 57.969 36.000 0.00 0.00 0.00 3.56
8035 8729 6.830324 TGAACATTCTAGGAAATAGCATTGCT 59.170 34.615 16.63 16.63 43.41 3.91
8036 8730 6.630444 ACATTCTAGGAAATAGCATTGCTG 57.370 37.500 21.31 1.76 40.10 4.41
8037 8731 6.359804 ACATTCTAGGAAATAGCATTGCTGA 58.640 36.000 21.31 4.26 40.10 4.26
8038 8732 6.830324 ACATTCTAGGAAATAGCATTGCTGAA 59.170 34.615 21.31 12.84 40.10 3.02
8039 8733 6.683974 TTCTAGGAAATAGCATTGCTGAAC 57.316 37.500 21.31 9.38 40.10 3.18
8040 8734 5.744171 TCTAGGAAATAGCATTGCTGAACA 58.256 37.500 21.31 0.95 40.10 3.18
8041 8735 6.359804 TCTAGGAAATAGCATTGCTGAACAT 58.640 36.000 21.31 3.57 40.10 2.71
8042 8736 5.927281 AGGAAATAGCATTGCTGAACATT 57.073 34.783 21.31 9.73 40.10 2.71
8043 8737 5.899299 AGGAAATAGCATTGCTGAACATTC 58.101 37.500 21.31 15.38 40.10 2.67
8044 8738 5.655532 AGGAAATAGCATTGCTGAACATTCT 59.344 36.000 21.31 7.09 40.10 2.40
8045 8739 6.830324 AGGAAATAGCATTGCTGAACATTCTA 59.170 34.615 21.31 0.00 40.10 2.10
8046 8740 6.914757 GGAAATAGCATTGCTGAACATTCTAC 59.085 38.462 21.31 7.85 40.10 2.59
8047 8741 7.201767 GGAAATAGCATTGCTGAACATTCTACT 60.202 37.037 21.31 0.00 40.10 2.57
8048 8742 8.737168 AAATAGCATTGCTGAACATTCTACTA 57.263 30.769 21.31 0.00 40.10 1.82
8049 8743 7.959689 ATAGCATTGCTGAACATTCTACTAG 57.040 36.000 21.31 0.00 40.10 2.57
8050 8744 5.121811 AGCATTGCTGAACATTCTACTAGG 58.878 41.667 11.09 0.00 37.57 3.02
8051 8745 5.104776 AGCATTGCTGAACATTCTACTAGGA 60.105 40.000 11.09 0.00 37.57 2.94
8052 8746 5.586243 GCATTGCTGAACATTCTACTAGGAA 59.414 40.000 0.16 0.00 0.00 3.36
8053 8747 6.094048 GCATTGCTGAACATTCTACTAGGAAA 59.906 38.462 0.16 0.00 0.00 3.13
8080 8774 5.184671 GCATGAATGAAGGAAAGAAGGACTT 59.815 40.000 0.00 0.00 40.98 3.01
8108 8803 2.951642 CCAGTTTTGGCAGTTGAGAGAA 59.048 45.455 0.00 0.00 37.73 2.87
8110 8805 4.320788 CCAGTTTTGGCAGTTGAGAGAATC 60.321 45.833 0.00 0.00 37.73 2.52
8114 8809 3.170791 TGGCAGTTGAGAGAATCGATC 57.829 47.619 0.00 0.00 42.67 3.69
8302 9024 1.475280 CCGTACGTGATTTGAGGAGGA 59.525 52.381 15.21 0.00 0.00 3.71
8377 9099 1.289066 CTTCACCGGAGAGCGTGAA 59.711 57.895 9.46 5.49 44.55 3.18
8392 9114 3.056328 GAACGTGCAGGGGAAGCC 61.056 66.667 11.67 0.00 0.00 4.35
8399 9121 3.787001 CAGGGGAAGCCGGAGACC 61.787 72.222 5.05 3.84 0.00 3.85
8400 9122 4.332543 AGGGGAAGCCGGAGACCA 62.333 66.667 5.05 0.00 0.00 4.02
8438 9169 0.163360 AGACGACGACGACGAAGAAG 59.837 55.000 25.15 2.87 42.66 2.85
8444 9175 2.510190 CGACGACGAAGAAGGCGACT 62.510 60.000 0.00 0.00 40.65 4.18
8452 9183 0.737715 AAGAAGGCGACTGACGATGC 60.738 55.000 0.00 0.00 45.77 3.91
8539 9273 3.470888 CCGCCCCTTCCGTGATCT 61.471 66.667 0.00 0.00 0.00 2.75
8540 9274 2.107141 CGCCCCTTCCGTGATCTC 59.893 66.667 0.00 0.00 0.00 2.75
8541 9275 2.506472 GCCCCTTCCGTGATCTCC 59.494 66.667 0.00 0.00 0.00 3.71
8555 9289 1.541310 ATCTCCAACCGCGTCCAAGA 61.541 55.000 4.92 1.41 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.095300 ACAACCAATTCGAAGATTATCATGCA 59.905 34.615 3.35 0.00 35.04 3.96
2 3 6.415867 CACAACCAATTCGAAGATTATCATGC 59.584 38.462 3.35 0.00 35.04 4.06
3 4 7.475015 ACACAACCAATTCGAAGATTATCATG 58.525 34.615 3.35 0.00 35.04 3.07
5 6 7.447374 AACACAACCAATTCGAAGATTATCA 57.553 32.000 3.35 0.00 35.04 2.15
6 7 8.742554 AAAACACAACCAATTCGAAGATTATC 57.257 30.769 3.35 0.00 35.04 1.75
7 8 9.191995 GAAAAACACAACCAATTCGAAGATTAT 57.808 29.630 3.35 0.00 35.04 1.28
8 9 8.410141 AGAAAAACACAACCAATTCGAAGATTA 58.590 29.630 3.35 0.00 35.04 1.75
11 12 6.202516 AGAAAAACACAACCAATTCGAAGA 57.797 33.333 3.35 0.00 0.00 2.87
12 13 7.167468 CCTTAGAAAAACACAACCAATTCGAAG 59.833 37.037 3.35 0.00 32.70 3.79
13 14 6.975772 CCTTAGAAAAACACAACCAATTCGAA 59.024 34.615 0.00 0.00 0.00 3.71
14 15 6.095720 ACCTTAGAAAAACACAACCAATTCGA 59.904 34.615 0.00 0.00 0.00 3.71
15 16 6.270064 ACCTTAGAAAAACACAACCAATTCG 58.730 36.000 0.00 0.00 0.00 3.34
17 18 8.856153 AAAACCTTAGAAAAACACAACCAATT 57.144 26.923 0.00 0.00 0.00 2.32
19 20 7.173390 CCAAAAACCTTAGAAAAACACAACCAA 59.827 33.333 0.00 0.00 0.00 3.67
20 21 6.651225 CCAAAAACCTTAGAAAAACACAACCA 59.349 34.615 0.00 0.00 0.00 3.67
21 22 6.402766 GCCAAAAACCTTAGAAAAACACAACC 60.403 38.462 0.00 0.00 0.00 3.77
22 23 6.370442 AGCCAAAAACCTTAGAAAAACACAAC 59.630 34.615 0.00 0.00 0.00 3.32
23 24 6.468543 AGCCAAAAACCTTAGAAAAACACAA 58.531 32.000 0.00 0.00 0.00 3.33
24 25 6.043854 AGCCAAAAACCTTAGAAAAACACA 57.956 33.333 0.00 0.00 0.00 3.72
25 26 6.978343 AAGCCAAAAACCTTAGAAAAACAC 57.022 33.333 0.00 0.00 0.00 3.32
26 27 7.842982 ACTAAGCCAAAAACCTTAGAAAAACA 58.157 30.769 12.75 0.00 41.81 2.83
27 28 8.712285 AACTAAGCCAAAAACCTTAGAAAAAC 57.288 30.769 12.75 0.00 41.81 2.43
28 29 9.727859 AAAACTAAGCCAAAAACCTTAGAAAAA 57.272 25.926 12.75 0.00 41.81 1.94
29 30 9.373603 GAAAACTAAGCCAAAAACCTTAGAAAA 57.626 29.630 12.75 0.00 41.81 2.29
30 31 8.755028 AGAAAACTAAGCCAAAAACCTTAGAAA 58.245 29.630 12.75 0.00 41.81 2.52
31 32 8.301252 AGAAAACTAAGCCAAAAACCTTAGAA 57.699 30.769 12.75 0.00 41.81 2.10
32 33 7.891498 AGAAAACTAAGCCAAAAACCTTAGA 57.109 32.000 12.75 0.00 41.81 2.10
39 40 9.465985 CGGTTAATAAGAAAACTAAGCCAAAAA 57.534 29.630 0.00 0.00 0.00 1.94
40 41 8.083462 CCGGTTAATAAGAAAACTAAGCCAAAA 58.917 33.333 0.00 0.00 0.00 2.44
41 42 7.447853 TCCGGTTAATAAGAAAACTAAGCCAAA 59.552 33.333 0.00 0.00 0.00 3.28
42 43 6.941436 TCCGGTTAATAAGAAAACTAAGCCAA 59.059 34.615 0.00 0.00 0.00 4.52
43 44 6.372381 GTCCGGTTAATAAGAAAACTAAGCCA 59.628 38.462 0.00 0.00 0.00 4.75
44 45 6.183360 GGTCCGGTTAATAAGAAAACTAAGCC 60.183 42.308 0.00 0.00 0.00 4.35
45 46 6.372381 TGGTCCGGTTAATAAGAAAACTAAGC 59.628 38.462 0.00 0.00 0.00 3.09
46 47 7.910441 TGGTCCGGTTAATAAGAAAACTAAG 57.090 36.000 0.00 0.00 0.00 2.18
47 48 8.866970 ATTGGTCCGGTTAATAAGAAAACTAA 57.133 30.769 0.00 0.00 0.00 2.24
49 50 9.117183 GATATTGGTCCGGTTAATAAGAAAACT 57.883 33.333 0.00 0.00 0.00 2.66
50 51 8.895737 TGATATTGGTCCGGTTAATAAGAAAAC 58.104 33.333 0.00 0.00 0.00 2.43
51 52 9.635404 ATGATATTGGTCCGGTTAATAAGAAAA 57.365 29.630 0.00 0.00 0.00 2.29
52 53 9.062524 CATGATATTGGTCCGGTTAATAAGAAA 57.937 33.333 0.00 0.00 0.00 2.52
53 54 7.174253 GCATGATATTGGTCCGGTTAATAAGAA 59.826 37.037 0.00 0.00 0.00 2.52
54 55 6.653320 GCATGATATTGGTCCGGTTAATAAGA 59.347 38.462 0.00 0.00 0.00 2.10
55 56 6.429692 TGCATGATATTGGTCCGGTTAATAAG 59.570 38.462 0.00 0.22 0.00 1.73
56 57 6.299922 TGCATGATATTGGTCCGGTTAATAA 58.700 36.000 0.00 0.00 0.00 1.40
57 58 5.870706 TGCATGATATTGGTCCGGTTAATA 58.129 37.500 0.00 5.84 0.00 0.98
58 59 4.724399 TGCATGATATTGGTCCGGTTAAT 58.276 39.130 0.00 3.61 0.00 1.40
59 60 4.157849 TGCATGATATTGGTCCGGTTAA 57.842 40.909 0.00 0.00 0.00 2.01
60 61 3.847671 TGCATGATATTGGTCCGGTTA 57.152 42.857 0.00 0.00 0.00 2.85
61 62 2.727123 TGCATGATATTGGTCCGGTT 57.273 45.000 0.00 0.00 0.00 4.44
62 63 2.172505 TCTTGCATGATATTGGTCCGGT 59.827 45.455 0.00 0.00 0.00 5.28
63 64 2.810274 CTCTTGCATGATATTGGTCCGG 59.190 50.000 2.33 0.00 0.00 5.14
64 65 2.225019 GCTCTTGCATGATATTGGTCCG 59.775 50.000 2.33 0.00 39.41 4.79
65 66 3.216800 TGCTCTTGCATGATATTGGTCC 58.783 45.455 2.33 0.00 45.31 4.46
78 79 1.337703 TGGTTCACATTGTGCTCTTGC 59.662 47.619 12.04 0.00 40.20 4.01
79 80 3.713858 TTGGTTCACATTGTGCTCTTG 57.286 42.857 12.04 0.00 32.98 3.02
80 81 3.068590 CCTTTGGTTCACATTGTGCTCTT 59.931 43.478 12.04 0.00 32.98 2.85
81 82 2.624838 CCTTTGGTTCACATTGTGCTCT 59.375 45.455 12.04 0.00 32.98 4.09
82 83 2.863704 GCCTTTGGTTCACATTGTGCTC 60.864 50.000 12.04 7.12 32.98 4.26
83 84 1.069049 GCCTTTGGTTCACATTGTGCT 59.931 47.619 12.04 0.00 32.98 4.40
84 85 1.202510 TGCCTTTGGTTCACATTGTGC 60.203 47.619 12.04 0.00 32.98 4.57
85 86 2.886862 TGCCTTTGGTTCACATTGTG 57.113 45.000 10.64 10.64 34.45 3.33
86 87 6.849085 TTATATGCCTTTGGTTCACATTGT 57.151 33.333 0.00 0.00 0.00 2.71
87 88 8.545229 TTTTTATATGCCTTTGGTTCACATTG 57.455 30.769 0.00 0.00 0.00 2.82
90 91 9.030452 ACTATTTTTATATGCCTTTGGTTCACA 57.970 29.630 0.00 0.00 0.00 3.58
91 92 9.869757 AACTATTTTTATATGCCTTTGGTTCAC 57.130 29.630 0.00 0.00 0.00 3.18
161 162 8.579863 AGGTCAAATAGGAAGAAATTGACTTTG 58.420 33.333 14.36 0.00 45.62 2.77
169 170 6.603599 GCCAGTTAGGTCAAATAGGAAGAAAT 59.396 38.462 0.00 0.00 40.61 2.17
173 174 5.104259 AGCCAGTTAGGTCAAATAGGAAG 57.896 43.478 0.00 0.00 40.61 3.46
175 176 5.724854 AGTTAGCCAGTTAGGTCAAATAGGA 59.275 40.000 0.00 0.00 40.61 2.94
177 178 8.038944 TGTAAGTTAGCCAGTTAGGTCAAATAG 58.961 37.037 0.00 0.00 40.61 1.73
179 180 6.775708 TGTAAGTTAGCCAGTTAGGTCAAAT 58.224 36.000 0.00 0.00 40.61 2.32
180 181 6.042322 TCTGTAAGTTAGCCAGTTAGGTCAAA 59.958 38.462 1.65 0.00 35.58 2.69
181 182 5.541101 TCTGTAAGTTAGCCAGTTAGGTCAA 59.459 40.000 1.65 0.00 35.58 3.18
183 184 5.656213 TCTGTAAGTTAGCCAGTTAGGTC 57.344 43.478 1.65 0.00 35.58 3.85
184 185 7.729124 TTATCTGTAAGTTAGCCAGTTAGGT 57.271 36.000 1.65 0.00 35.58 3.08
185 186 8.258708 ACTTTATCTGTAAGTTAGCCAGTTAGG 58.741 37.037 1.65 0.00 34.68 2.69
186 187 9.654663 AACTTTATCTGTAAGTTAGCCAGTTAG 57.345 33.333 0.00 0.00 42.39 2.34
227 228 9.332713 AGGGATTTTGGTAATGAAGGAATAAAA 57.667 29.630 0.00 0.00 0.00 1.52
281 283 0.391597 ACCGAAAGCGAGGACAAGAA 59.608 50.000 0.00 0.00 40.82 2.52
320 322 4.339247 AGTTGCATAGCCCACATCATAAAC 59.661 41.667 0.00 0.00 0.00 2.01
325 327 2.421388 GGTAGTTGCATAGCCCACATCA 60.421 50.000 0.00 0.00 0.00 3.07
332 334 2.442413 TGGTTTGGTAGTTGCATAGCC 58.558 47.619 0.00 0.00 0.00 3.93
363 366 6.543465 CCAATAAGTCCAAGAATGCATCACTA 59.457 38.462 0.00 0.00 0.00 2.74
384 390 5.539574 TCATTTCCACTGTTCATTGTCCAAT 59.460 36.000 0.00 0.00 0.00 3.16
393 399 4.594123 TCGTACTCATTTCCACTGTTCA 57.406 40.909 0.00 0.00 0.00 3.18
401 407 6.509656 TGGTACACATATCGTACTCATTTCC 58.490 40.000 10.38 0.00 39.36 3.13
420 426 4.501071 ACACATCTGTAATTCGGTGGTAC 58.499 43.478 0.00 0.00 0.00 3.34
422 428 3.260884 AGACACATCTGTAATTCGGTGGT 59.739 43.478 0.00 0.00 32.29 4.16
424 430 6.042777 ACATAGACACATCTGTAATTCGGTG 58.957 40.000 0.00 0.00 36.29 4.94
426 432 6.419116 CAGACATAGACACATCTGTAATTCGG 59.581 42.308 0.00 0.00 36.29 4.30
427 433 7.386978 CAGACATAGACACATCTGTAATTCG 57.613 40.000 0.00 0.00 36.29 3.34
434 440 4.624452 CACACACAGACATAGACACATCTG 59.376 45.833 0.00 0.00 43.47 2.90
435 441 4.322273 CCACACACAGACATAGACACATCT 60.322 45.833 0.00 0.00 39.15 2.90
436 442 3.928992 CCACACACAGACATAGACACATC 59.071 47.826 0.00 0.00 0.00 3.06
449 455 1.964223 AGTCTAGACCACCACACACAG 59.036 52.381 19.38 0.00 0.00 3.66
450 456 1.961394 GAGTCTAGACCACCACACACA 59.039 52.381 19.38 0.00 0.00 3.72
462 468 8.644318 GTGAAACTTAAACTTGTGAGTCTAGA 57.356 34.615 0.00 0.00 34.21 2.43
503 510 6.160684 GCCACCCGTATTTTGAATTTAAACT 58.839 36.000 0.00 0.00 0.00 2.66
520 527 0.958091 TCACAAATCTTTGCCACCCG 59.042 50.000 2.63 0.00 41.79 5.28
522 529 4.051237 GTTTCTCACAAATCTTTGCCACC 58.949 43.478 2.63 0.00 41.79 4.61
523 530 4.936891 AGTTTCTCACAAATCTTTGCCAC 58.063 39.130 2.63 0.00 41.79 5.01
525 532 5.157067 GCTAGTTTCTCACAAATCTTTGCC 58.843 41.667 2.63 0.00 41.79 4.52
526 533 4.848299 CGCTAGTTTCTCACAAATCTTTGC 59.152 41.667 2.63 0.00 41.79 3.68
531 538 6.902417 GCTTTATCGCTAGTTTCTCACAAATC 59.098 38.462 0.00 0.00 0.00 2.17
545 552 5.593679 AAACTAGACCAGCTTTATCGCTA 57.406 39.130 0.00 0.00 38.41 4.26
549 556 7.281100 ACTTGCATAAACTAGACCAGCTTTATC 59.719 37.037 0.00 0.00 0.00 1.75
550 557 7.112779 ACTTGCATAAACTAGACCAGCTTTAT 58.887 34.615 0.00 0.00 0.00 1.40
563 570 9.189156 ACACCAAATGATATACTTGCATAAACT 57.811 29.630 0.00 0.00 0.00 2.66
568 575 8.752005 ACTTACACCAAATGATATACTTGCAT 57.248 30.769 0.00 0.00 0.00 3.96
580 587 4.481930 TTGAAGCGACTTACACCAAATG 57.518 40.909 0.00 0.00 0.00 2.32
581 588 5.240623 TGATTTGAAGCGACTTACACCAAAT 59.759 36.000 12.37 12.37 36.03 2.32
586 593 6.370593 TGAATTGATTTGAAGCGACTTACAC 58.629 36.000 0.00 0.00 0.00 2.90
588 595 7.061094 CCTTTGAATTGATTTGAAGCGACTTAC 59.939 37.037 0.00 0.00 0.00 2.34
590 597 5.922544 CCTTTGAATTGATTTGAAGCGACTT 59.077 36.000 0.00 0.00 0.00 3.01
605 1200 4.344679 TCACTGCCATTGAACCTTTGAATT 59.655 37.500 0.00 0.00 0.00 2.17
624 1219 1.140312 TCCCCAGAGCAAAAGTCACT 58.860 50.000 0.00 0.00 0.00 3.41
626 1221 1.494721 AGTTCCCCAGAGCAAAAGTCA 59.505 47.619 0.00 0.00 0.00 3.41
631 1226 1.628846 GGACTAGTTCCCCAGAGCAAA 59.371 52.381 0.00 0.00 38.70 3.68
632 1227 1.276622 GGACTAGTTCCCCAGAGCAA 58.723 55.000 0.00 0.00 38.70 3.91
643 1238 1.615392 ACGTGCCGTTAAGGACTAGTT 59.385 47.619 0.00 0.00 45.00 2.24
644 1239 1.068055 CACGTGCCGTTAAGGACTAGT 60.068 52.381 0.82 0.00 45.00 2.57
647 1242 1.666872 GCACGTGCCGTTAAGGACT 60.667 57.895 30.12 0.00 45.00 3.85
655 1250 0.955428 ATTCTTCATGCACGTGCCGT 60.955 50.000 35.72 22.52 42.36 5.68
656 1251 0.168788 AATTCTTCATGCACGTGCCG 59.831 50.000 35.72 26.48 41.18 5.69
660 1255 3.149196 ACCAGAAATTCTTCATGCACGT 58.851 40.909 0.00 0.00 33.64 4.49
667 1262 3.493129 CGACGACAACCAGAAATTCTTCA 59.507 43.478 0.00 0.00 33.64 3.02
670 1265 3.057734 GTCGACGACAACCAGAAATTCT 58.942 45.455 22.66 0.00 32.09 2.40
674 1269 2.198406 CTTGTCGACGACAACCAGAAA 58.802 47.619 33.39 16.06 45.88 2.52
675 1270 1.537348 CCTTGTCGACGACAACCAGAA 60.537 52.381 33.39 16.73 45.88 3.02
676 1271 0.031585 CCTTGTCGACGACAACCAGA 59.968 55.000 33.39 17.40 45.88 3.86
677 1272 0.249322 ACCTTGTCGACGACAACCAG 60.249 55.000 33.39 26.17 45.88 4.00
678 1273 0.249155 GACCTTGTCGACGACAACCA 60.249 55.000 33.39 18.09 45.88 3.67
679 1274 0.249155 TGACCTTGTCGACGACAACC 60.249 55.000 33.39 24.85 45.88 3.77
680 1275 1.521423 CTTGACCTTGTCGACGACAAC 59.479 52.381 33.39 25.09 45.88 3.32
682 1277 0.596600 GCTTGACCTTGTCGACGACA 60.597 55.000 26.04 26.04 41.09 4.35
683 1278 1.282930 GGCTTGACCTTGTCGACGAC 61.283 60.000 20.97 20.97 34.95 4.34
685 1280 2.372690 CGGCTTGACCTTGTCGACG 61.373 63.158 11.62 0.00 34.95 5.12
686 1281 0.389948 ATCGGCTTGACCTTGTCGAC 60.390 55.000 9.11 9.11 43.07 4.20
687 1282 0.389817 CATCGGCTTGACCTTGTCGA 60.390 55.000 0.00 0.00 44.36 4.20
688 1283 1.361668 CCATCGGCTTGACCTTGTCG 61.362 60.000 0.00 0.00 34.95 4.35
689 1284 1.026718 CCCATCGGCTTGACCTTGTC 61.027 60.000 0.00 0.00 35.61 3.18
691 1286 3.909662 CCCATCGGCTTGACCTTG 58.090 61.111 0.00 0.00 35.61 3.61
702 1297 1.097547 AATTTCGCCTGAGCCCATCG 61.098 55.000 0.00 0.00 34.57 3.84
703 1298 0.383231 CAATTTCGCCTGAGCCCATC 59.617 55.000 0.00 0.00 34.57 3.51
704 1299 0.034186 TCAATTTCGCCTGAGCCCAT 60.034 50.000 0.00 0.00 34.57 4.00
705 1300 0.034186 ATCAATTTCGCCTGAGCCCA 60.034 50.000 0.00 0.00 34.57 5.36
706 1301 1.106285 AATCAATTTCGCCTGAGCCC 58.894 50.000 0.00 0.00 34.57 5.19
707 1302 2.947448 AAATCAATTTCGCCTGAGCC 57.053 45.000 0.00 0.00 34.57 4.70
708 1303 4.333926 AGTCTAAATCAATTTCGCCTGAGC 59.666 41.667 0.00 0.00 0.00 4.26
709 1304 6.314896 AGAAGTCTAAATCAATTTCGCCTGAG 59.685 38.462 0.00 0.00 0.00 3.35
710 1305 6.173339 AGAAGTCTAAATCAATTTCGCCTGA 58.827 36.000 0.00 0.00 0.00 3.86
711 1306 6.428385 AGAAGTCTAAATCAATTTCGCCTG 57.572 37.500 0.00 0.00 0.00 4.85
712 1307 6.623767 GCAAGAAGTCTAAATCAATTTCGCCT 60.624 38.462 0.00 0.00 0.00 5.52
715 1310 8.506140 TTTGCAAGAAGTCTAAATCAATTTCG 57.494 30.769 0.00 0.00 0.00 3.46
748 1346 9.995003 TTGGCTTCTTATGTTTAAATCAATGTT 57.005 25.926 0.00 0.00 0.00 2.71
785 1383 9.794719 GGCAGGAAAATTATAGGTCTACTAATT 57.205 33.333 0.00 0.00 34.79 1.40
786 1384 8.945193 TGGCAGGAAAATTATAGGTCTACTAAT 58.055 33.333 0.00 0.00 34.79 1.73
787 1385 8.326765 TGGCAGGAAAATTATAGGTCTACTAA 57.673 34.615 0.00 0.00 34.79 2.24
788 1386 7.924358 TGGCAGGAAAATTATAGGTCTACTA 57.076 36.000 0.00 0.00 35.80 1.82
789 1387 6.824958 TGGCAGGAAAATTATAGGTCTACT 57.175 37.500 0.00 0.00 0.00 2.57
790 1388 7.012421 CAGTTGGCAGGAAAATTATAGGTCTAC 59.988 40.741 0.00 0.00 0.00 2.59
791 1389 7.054124 CAGTTGGCAGGAAAATTATAGGTCTA 58.946 38.462 0.00 0.00 0.00 2.59
792 1390 5.888161 CAGTTGGCAGGAAAATTATAGGTCT 59.112 40.000 0.00 0.00 0.00 3.85
793 1391 5.067805 CCAGTTGGCAGGAAAATTATAGGTC 59.932 44.000 0.00 0.00 0.00 3.85
807 1405 0.179020 TGAGTTGGACCAGTTGGCAG 60.179 55.000 0.00 0.00 39.32 4.85
1155 1756 4.755507 GGGGGACGGTCGAGGAGT 62.756 72.222 1.43 0.00 0.00 3.85
1169 1770 4.101448 CGAGCCTTCTGGTGGGGG 62.101 72.222 0.00 0.00 35.27 5.40
1170 1771 4.101448 CCGAGCCTTCTGGTGGGG 62.101 72.222 0.00 0.00 36.75 4.96
1171 1772 4.785453 GCCGAGCCTTCTGGTGGG 62.785 72.222 0.00 0.00 42.68 4.61
1172 1773 4.785453 GGCCGAGCCTTCTGGTGG 62.785 72.222 7.58 0.00 46.69 4.61
1204 1805 3.165318 CAAAATCACGGCGCGCAC 61.165 61.111 34.42 20.89 0.00 5.34
1205 1806 4.397090 CCAAAATCACGGCGCGCA 62.397 61.111 34.42 13.24 0.00 6.09
1206 1807 3.889831 AACCAAAATCACGGCGCGC 62.890 57.895 25.94 25.94 0.00 6.86
1207 1808 2.080062 CAACCAAAATCACGGCGCG 61.080 57.895 6.90 0.00 0.00 6.86
1208 1809 1.001745 GTCAACCAAAATCACGGCGC 61.002 55.000 6.90 0.00 0.00 6.53
1209 1810 0.724453 CGTCAACCAAAATCACGGCG 60.724 55.000 4.80 4.80 0.00 6.46
1210 1811 0.589223 TCGTCAACCAAAATCACGGC 59.411 50.000 0.00 0.00 0.00 5.68
1220 1821 2.915659 ACCGAGGCTCGTCAACCA 60.916 61.111 32.41 0.00 38.40 3.67
1225 1826 4.176851 GACCGACCGAGGCTCGTC 62.177 72.222 32.41 26.21 38.40 4.20
1380 1988 4.591072 AGGGCTAAGTCCAGTCTATCAATC 59.409 45.833 0.00 0.00 0.00 2.67
1385 1993 3.052490 ACTCAGGGCTAAGTCCAGTCTAT 60.052 47.826 0.00 0.00 0.00 1.98
1412 2021 2.887783 TCGGCTAAAATGGAAGCAAACA 59.112 40.909 0.00 0.00 40.61 2.83
1720 2345 4.595116 ACGTACATGTCAAGCTCGTATAC 58.405 43.478 0.00 0.00 0.00 1.47
1731 2356 8.560374 TCAATTTAACATCAAACGTACATGTCA 58.440 29.630 0.00 0.00 30.22 3.58
1933 2563 3.020984 GGCGAATGGGAAGTTAATCCAA 58.979 45.455 0.00 0.00 41.55 3.53
1984 2614 2.582687 CGGAAGTCGTAGTCAAGTGAC 58.417 52.381 3.12 3.12 45.08 3.67
2092 2723 4.623932 ACCAGTACTTGCAATCTTCTGA 57.376 40.909 16.82 0.00 0.00 3.27
2356 2987 8.966868 TCTGAAAAGAAAAGGATACAACTGTTT 58.033 29.630 0.00 0.00 41.41 2.83
2369 3000 4.993905 ACCCAACGTTCTGAAAAGAAAAG 58.006 39.130 0.00 0.00 0.00 2.27
2546 3182 3.057315 GGATGCAACTTGCTTTGAGCTAA 60.057 43.478 14.78 0.00 45.31 3.09
2607 3243 7.446001 ACCAAAAGCTTCAAAATCAACAAAA 57.554 28.000 0.00 0.00 0.00 2.44
2617 3253 9.638239 CTATAAGCAATAACCAAAAGCTTCAAA 57.362 29.630 0.00 0.00 43.74 2.69
2699 3335 4.681074 TCCAAATTCCAGTTCAAAACCC 57.319 40.909 0.00 0.00 0.00 4.11
2705 3341 8.187913 TGAAACATAATCCAAATTCCAGTTCA 57.812 30.769 0.00 0.00 0.00 3.18
2758 3394 4.822896 TGCATGAAGCTTATGATGCACATA 59.177 37.500 25.41 11.37 44.75 2.29
2782 3418 9.640963 CAGCACCTAATTATCCTACATAAGTAC 57.359 37.037 0.00 0.00 0.00 2.73
2807 3444 0.179037 CTAGCAGGCTGGCAATAGCA 60.179 55.000 17.64 0.00 45.46 3.49
2816 3453 0.035317 TGTGTTGACCTAGCAGGCTG 59.965 55.000 10.94 10.94 39.63 4.85
2873 3510 5.082059 CGATGTCTCACAAACAGTTTATGC 58.918 41.667 0.00 0.00 0.00 3.14
2931 3568 3.987868 GAGATAGTGCGTGTTGTCAAAGA 59.012 43.478 0.00 0.00 0.00 2.52
2944 3581 8.146479 TGAACACATGAATTATGAGATAGTGC 57.854 34.615 0.00 0.00 39.21 4.40
2957 3594 5.865552 GCAAGTGCTAAATGAACACATGAAT 59.134 36.000 0.00 0.00 35.60 2.57
2998 3635 1.816835 CATGTTGCCAAGATGCTCAGT 59.183 47.619 1.25 0.00 0.00 3.41
2999 3636 1.816835 ACATGTTGCCAAGATGCTCAG 59.183 47.619 13.93 0.00 35.71 3.35
3027 3664 9.908152 TGATCATATAACTTTGATACCTACACG 57.092 33.333 0.00 0.00 32.84 4.49
3143 3780 3.678056 ATGGAAGAACGAGCACTGTAA 57.322 42.857 0.00 0.00 0.00 2.41
3232 3869 6.585322 GCAATAGACCAGATACGGTATGTTAC 59.415 42.308 5.18 0.00 40.22 2.50
3254 3891 5.309323 GCACTAGAAAATACCATGTGCAA 57.691 39.130 9.82 0.00 45.64 4.08
3281 3918 8.986477 AACCTGCAAATTTTACATCTCAATAC 57.014 30.769 0.00 0.00 0.00 1.89
3585 4222 3.332919 CCTGACTCAAGTGGATGTGAAG 58.667 50.000 0.00 0.00 0.00 3.02
3617 4254 2.553028 CCGGATAGATGTGGGAATTGGG 60.553 54.545 0.00 0.00 0.00 4.12
3637 4274 4.502087 GGGTGTACAGAAATACCGGTATCC 60.502 50.000 26.95 20.31 34.01 2.59
3651 4288 0.110486 ACAAGCTTGGGGGTGTACAG 59.890 55.000 29.18 0.86 0.00 2.74
3652 4289 0.179004 CACAAGCTTGGGGGTGTACA 60.179 55.000 29.18 0.00 0.00 2.90
3653 4290 2.641197 CACAAGCTTGGGGGTGTAC 58.359 57.895 29.18 0.00 0.00 2.90
3660 4297 1.747355 CTATCTTGCCACAAGCTTGGG 59.253 52.381 29.18 25.96 44.23 4.12
3661 4298 1.133790 GCTATCTTGCCACAAGCTTGG 59.866 52.381 29.18 15.63 44.23 3.61
3662 4299 2.089980 AGCTATCTTGCCACAAGCTTG 58.910 47.619 24.84 24.84 40.52 4.01
3663 4300 2.089980 CAGCTATCTTGCCACAAGCTT 58.910 47.619 0.00 0.00 41.44 3.74
3664 4301 1.747709 CAGCTATCTTGCCACAAGCT 58.252 50.000 2.41 0.00 44.08 3.74
3665 4302 0.100146 GCAGCTATCTTGCCACAAGC 59.900 55.000 2.41 0.00 44.14 4.01
3722 4374 1.534729 ATTTTTCGGTGGGAGCTGAC 58.465 50.000 0.00 0.00 0.00 3.51
3783 4435 9.933723 CATTTTCTGATTTGTAATTCTTCCCTT 57.066 29.630 0.00 0.00 0.00 3.95
3897 4549 1.909302 GTGGAACAGGAGGAGGATGAA 59.091 52.381 0.00 0.00 41.80 2.57
4217 4869 4.201851 CGCATGACTTCTATTTGTCCTTGG 60.202 45.833 0.00 0.00 32.67 3.61
4267 4919 3.149981 CCTTGACCTTTTCCTTCCTGAC 58.850 50.000 0.00 0.00 0.00 3.51
4283 4935 7.147759 TGGAATCTTTTGAACATTTGACCTTGA 60.148 33.333 0.00 0.00 0.00 3.02
4342 4994 3.456380 AGTATGCCAAAATCACCACCT 57.544 42.857 0.00 0.00 0.00 4.00
4367 5019 4.110482 GTCCTTGAATCATTTGCTGATGC 58.890 43.478 0.00 0.00 44.03 3.91
4471 5123 6.872920 AGATGAATAGGAAGAGTCACTTGAC 58.127 40.000 0.77 0.77 45.08 3.18
4637 5289 2.738587 TGCCAGACCCACTTTTTACA 57.261 45.000 0.00 0.00 0.00 2.41
4676 5328 2.224426 ACTGTTGGCATCAGTTACGGAA 60.224 45.455 22.27 0.00 42.50 4.30
4802 5454 2.063266 CGTAGGCAGCGTCTGTTTTTA 58.937 47.619 8.32 0.00 33.43 1.52
4865 5517 0.318120 GCACAGAAAACCACATGGGG 59.682 55.000 14.08 14.08 42.91 4.96
4878 5530 4.154015 CGAAACCTGATTACAATGCACAGA 59.846 41.667 0.00 0.00 0.00 3.41
4980 5632 4.065789 CAACAGAAACCTCTAACCCTGAC 58.934 47.826 0.00 0.00 0.00 3.51
5025 5677 7.642669 AGAAATGCACCTTCAAATATATGTCG 58.357 34.615 11.79 0.00 0.00 4.35
5145 5797 7.038659 AGCTGATACTGAACTATGACTTGAAC 58.961 38.462 0.00 0.00 0.00 3.18
5232 5884 7.928307 AAACTGACTGATGTTATAAGCATGT 57.072 32.000 0.00 0.50 0.00 3.21
5260 5912 6.223852 AGCAATCGTAGAACAGAAAGAAAGA 58.776 36.000 0.00 0.00 43.58 2.52
5261 5913 6.473397 AGCAATCGTAGAACAGAAAGAAAG 57.527 37.500 0.00 0.00 43.58 2.62
5309 5961 9.328845 AGCAAACATGACAAAAGATAAAATGTT 57.671 25.926 0.00 0.00 38.14 2.71
5340 5992 4.848562 TGAACGGATAACAGATCGCTAT 57.151 40.909 0.00 0.00 0.00 2.97
5356 6008 9.190858 TCAGAATTTAACCAAATTTCATGAACG 57.809 29.630 7.89 0.00 42.97 3.95
5705 6357 2.686915 GCACCCCTCTCATTTGATCTTG 59.313 50.000 0.00 0.00 0.00 3.02
5829 6481 0.467844 AACCACCATCAACAGCAGCA 60.468 50.000 0.00 0.00 0.00 4.41
6573 7229 4.647424 CAGTTCCCTTTGCAAACTGTTA 57.353 40.909 16.63 0.00 43.03 2.41
6735 7391 1.133668 AGGAGCAGCTGGTTTTCTGTT 60.134 47.619 21.18 0.00 33.09 3.16
6801 7457 6.561166 CGATGAGCATCTTCTAATCGTTGTTC 60.561 42.308 8.66 0.00 40.75 3.18
6895 7551 4.551388 GATCATTACGCCTCCAGAACTAG 58.449 47.826 0.00 0.00 0.00 2.57
6897 7553 2.103263 GGATCATTACGCCTCCAGAACT 59.897 50.000 0.00 0.00 0.00 3.01
6898 7554 2.103263 AGGATCATTACGCCTCCAGAAC 59.897 50.000 0.00 0.00 0.00 3.01
7005 7662 3.623703 TGATGGTGCTTTATCTGTGCAT 58.376 40.909 0.00 0.00 39.00 3.96
7126 7783 4.032104 GTGAAATGGCAGATTTTCATTCGC 59.968 41.667 15.49 2.52 42.12 4.70
7127 7784 4.563976 GGTGAAATGGCAGATTTTCATTCG 59.436 41.667 15.49 0.00 42.12 3.34
7149 7806 1.509644 ATGTGCGTGCAGACTGTTGG 61.510 55.000 3.99 0.00 0.00 3.77
7213 7870 3.882888 GGTGATGTTTCAAGAGTGTTCCA 59.117 43.478 0.00 0.00 32.48 3.53
7271 7930 3.065575 CTGGAAGTATGTGGACGCC 57.934 57.895 0.00 0.00 0.00 5.68
7421 8080 3.243267 ACTGCACGGAAAACCAATTGTAC 60.243 43.478 4.43 0.00 0.00 2.90
7429 8089 2.265904 GGGGACTGCACGGAAAACC 61.266 63.158 0.00 0.00 0.00 3.27
7467 8127 1.371389 GCTCCACGAGTTCGAACGT 60.371 57.895 21.87 14.77 43.02 3.99
7490 8150 2.202756 GGGAACGCAGCTAGGACG 60.203 66.667 0.00 0.00 0.00 4.79
7518 8178 1.072159 GCCACTTCCTCACTGTGCT 59.928 57.895 2.12 0.00 0.00 4.40
7523 8183 0.034059 CTTCGTGCCACTTCCTCACT 59.966 55.000 0.00 0.00 0.00 3.41
7550 8210 2.119611 TCCAGGGCGGAGAACTCA 59.880 61.111 4.23 0.00 39.64 3.41
7579 8239 2.727798 CGACACGAAAATACAACCGTCT 59.272 45.455 0.00 0.00 32.50 4.18
7694 8354 1.002544 GACCATCCTACCCATGCTAGC 59.997 57.143 8.10 8.10 0.00 3.42
7754 8417 0.751277 TACGGAAACCCTATCGGCGA 60.751 55.000 13.87 13.87 33.26 5.54
7776 8439 6.545666 TCTCTTTCTTTTCAACCTGCATTACA 59.454 34.615 0.00 0.00 0.00 2.41
7788 8451 6.936900 CCTGTACCAATCTCTCTTTCTTTTCA 59.063 38.462 0.00 0.00 0.00 2.69
7831 8497 1.920051 CGCTAGCATAGTGTGTGCG 59.080 57.895 16.45 8.79 46.86 5.34
7852 8518 3.372954 CAAAACGGCCGATTTACAAACA 58.627 40.909 35.90 0.00 0.00 2.83
8014 8708 6.872628 TCAGCAATGCTATTTCCTAGAATG 57.127 37.500 7.70 0.00 36.40 2.67
8028 8722 5.118990 TCCTAGTAGAATGTTCAGCAATGC 58.881 41.667 0.00 0.00 0.00 3.56
8029 8723 7.615582 TTTCCTAGTAGAATGTTCAGCAATG 57.384 36.000 0.00 0.00 0.00 2.82
8030 8724 9.553064 CTATTTCCTAGTAGAATGTTCAGCAAT 57.447 33.333 0.00 0.00 0.00 3.56
8031 8725 7.495934 GCTATTTCCTAGTAGAATGTTCAGCAA 59.504 37.037 0.00 0.00 0.00 3.91
8032 8726 6.986817 GCTATTTCCTAGTAGAATGTTCAGCA 59.013 38.462 0.00 0.00 0.00 4.41
8033 8727 6.986817 TGCTATTTCCTAGTAGAATGTTCAGC 59.013 38.462 0.00 0.00 0.00 4.26
8034 8728 8.986847 CATGCTATTTCCTAGTAGAATGTTCAG 58.013 37.037 0.00 0.00 31.85 3.02
8035 8729 8.704668 TCATGCTATTTCCTAGTAGAATGTTCA 58.295 33.333 0.00 0.00 36.03 3.18
8036 8730 9.547753 TTCATGCTATTTCCTAGTAGAATGTTC 57.452 33.333 0.00 0.00 36.03 3.18
8038 8732 9.499479 CATTCATGCTATTTCCTAGTAGAATGT 57.501 33.333 0.00 0.00 36.03 2.71
8039 8733 9.716531 TCATTCATGCTATTTCCTAGTAGAATG 57.283 33.333 0.00 0.00 38.00 2.67
8041 8735 9.770097 CTTCATTCATGCTATTTCCTAGTAGAA 57.230 33.333 0.00 0.00 0.00 2.10
8042 8736 8.370940 CCTTCATTCATGCTATTTCCTAGTAGA 58.629 37.037 0.00 0.00 0.00 2.59
8043 8737 8.370940 TCCTTCATTCATGCTATTTCCTAGTAG 58.629 37.037 0.00 0.00 0.00 2.57
8044 8738 8.262601 TCCTTCATTCATGCTATTTCCTAGTA 57.737 34.615 0.00 0.00 0.00 1.82
8045 8739 7.141758 TCCTTCATTCATGCTATTTCCTAGT 57.858 36.000 0.00 0.00 0.00 2.57
8046 8740 8.455903 TTTCCTTCATTCATGCTATTTCCTAG 57.544 34.615 0.00 0.00 0.00 3.02
8047 8741 8.274322 TCTTTCCTTCATTCATGCTATTTCCTA 58.726 33.333 0.00 0.00 0.00 2.94
8048 8742 7.121382 TCTTTCCTTCATTCATGCTATTTCCT 58.879 34.615 0.00 0.00 0.00 3.36
8049 8743 7.338800 TCTTTCCTTCATTCATGCTATTTCC 57.661 36.000 0.00 0.00 0.00 3.13
8050 8744 7.919621 CCTTCTTTCCTTCATTCATGCTATTTC 59.080 37.037 0.00 0.00 0.00 2.17
8051 8745 7.616935 TCCTTCTTTCCTTCATTCATGCTATTT 59.383 33.333 0.00 0.00 0.00 1.40
8052 8746 7.067981 GTCCTTCTTTCCTTCATTCATGCTATT 59.932 37.037 0.00 0.00 0.00 1.73
8053 8747 6.545298 GTCCTTCTTTCCTTCATTCATGCTAT 59.455 38.462 0.00 0.00 0.00 2.97
8080 8774 0.746063 CTGCCAAAACTGGAGTTGCA 59.254 50.000 0.00 3.76 38.44 4.08
8132 8828 1.735376 CTGGTGGAGGTACGATCCGG 61.735 65.000 0.00 0.00 39.91 5.14
8156 8852 8.078060 TCTGAATCTGATTATACCAACAGACA 57.922 34.615 2.28 0.00 41.16 3.41
8302 9024 5.105635 TCGACCTACGTAACATGGAAGATTT 60.106 40.000 5.65 0.00 43.13 2.17
8403 9125 1.447838 TCTTCGTCTTCGCCATGGC 60.448 57.895 27.67 27.67 36.96 4.40
8404 9126 1.413767 CGTCTTCGTCTTCGCCATGG 61.414 60.000 7.63 7.63 36.96 3.66
8405 9127 0.456142 TCGTCTTCGTCTTCGCCATG 60.456 55.000 0.00 0.00 38.33 3.66
8406 9128 0.456312 GTCGTCTTCGTCTTCGCCAT 60.456 55.000 0.00 0.00 38.33 4.40
8407 9129 1.081641 GTCGTCTTCGTCTTCGCCA 60.082 57.895 0.00 0.00 38.33 5.69
8408 9130 2.144680 CGTCGTCTTCGTCTTCGCC 61.145 63.158 0.00 0.00 38.33 5.54
8411 9133 0.162507 TCGTCGTCGTCTTCGTCTTC 59.837 55.000 1.33 0.00 38.33 2.87
8413 9135 1.490692 GTCGTCGTCGTCTTCGTCT 59.509 57.895 1.33 0.00 38.33 4.18
8415 9137 1.821241 TTCGTCGTCGTCGTCTTCGT 61.821 55.000 11.41 0.00 38.33 3.85
8438 9169 3.558411 GCAGCATCGTCAGTCGCC 61.558 66.667 0.00 0.00 39.67 5.54
8533 9267 1.810030 GGACGCGGTTGGAGATCAC 60.810 63.158 12.47 0.00 0.00 3.06
8534 9268 1.822114 TTGGACGCGGTTGGAGATCA 61.822 55.000 12.47 0.00 0.00 2.92
8537 9271 2.154798 CTCTTGGACGCGGTTGGAGA 62.155 60.000 12.47 6.18 0.00 3.71
8538 9272 1.738099 CTCTTGGACGCGGTTGGAG 60.738 63.158 12.47 7.49 0.00 3.86
8539 9273 2.342279 CTCTTGGACGCGGTTGGA 59.658 61.111 12.47 0.76 0.00 3.53
8540 9274 2.742372 CCTCTTGGACGCGGTTGG 60.742 66.667 12.47 0.00 34.57 3.77
8541 9275 3.423154 GCCTCTTGGACGCGGTTG 61.423 66.667 12.47 0.00 34.57 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.