Multiple sequence alignment - TraesCS1A01G422100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G422100 chr1A 100.000 6367 0 0 1332 7698 577846424 577840058 0.000000e+00 11758.0
1 TraesCS1A01G422100 chr1A 100.000 1087 0 0 1 1087 577847755 577846669 0.000000e+00 2008.0
2 TraesCS1A01G422100 chr1A 82.896 2286 220 85 4765 6964 553539872 553542072 0.000000e+00 1897.0
3 TraesCS1A01G422100 chr1A 96.367 578 21 0 1 578 82088870 82089447 0.000000e+00 952.0
4 TraesCS1A01G422100 chr1A 95.848 578 19 1 1 578 393483476 393484048 0.000000e+00 929.0
5 TraesCS1A01G422100 chr1A 84.807 441 41 10 1931 2362 553536931 553537354 3.320000e-113 420.0
6 TraesCS1A01G422100 chr1A 86.614 381 37 10 2436 2808 553537361 553537735 7.190000e-110 409.0
7 TraesCS1A01G422100 chr1A 86.707 331 38 6 4430 4760 553539436 553539760 5.680000e-96 363.0
8 TraesCS1A01G422100 chr1A 89.474 266 26 2 2813 3077 553537900 553538164 1.240000e-87 335.0
9 TraesCS1A01G422100 chr1A 84.637 358 29 12 743 1085 553535723 553536069 4.450000e-87 333.0
10 TraesCS1A01G422100 chr1A 77.394 637 79 24 3161 3733 553538166 553538801 1.250000e-82 318.0
11 TraesCS1A01G422100 chr1A 90.698 172 15 1 4145 4316 553539257 553539427 2.160000e-55 228.0
12 TraesCS1A01G422100 chr1A 100.000 32 0 0 573 604 577845278 577845247 8.340000e-05 60.2
13 TraesCS1A01G422100 chr1A 100.000 32 0 0 2478 2509 577847183 577847152 8.340000e-05 60.2
14 TraesCS1A01G422100 chr1D 96.592 2670 75 7 1656 4316 481389429 481386767 0.000000e+00 4412.0
15 TraesCS1A01G422100 chr1D 91.724 2187 111 30 4936 7084 481385974 481383820 0.000000e+00 2972.0
16 TraesCS1A01G422100 chr1D 83.268 2301 256 66 4721 6945 461905767 461908014 0.000000e+00 1997.0
17 TraesCS1A01G422100 chr1D 82.857 1750 209 49 2616 4316 461904005 461905712 0.000000e+00 1485.0
18 TraesCS1A01G422100 chr1D 96.721 488 16 0 4573 5060 481386455 481385968 0.000000e+00 813.0
19 TraesCS1A01G422100 chr1D 86.252 611 58 12 7112 7698 481383824 481383216 2.340000e-179 640.0
20 TraesCS1A01G422100 chr1D 84.480 625 73 18 1931 2543 461903363 461903975 5.140000e-166 595.0
21 TraesCS1A01G422100 chr1D 88.732 497 26 13 599 1087 481390128 481389654 1.440000e-161 580.0
22 TraesCS1A01G422100 chr1D 98.000 200 4 0 1332 1531 481389624 481389425 1.590000e-91 348.0
23 TraesCS1A01G422100 chr1D 84.488 361 29 18 740 1085 461902228 461902576 1.600000e-86 331.0
24 TraesCS1A01G422100 chr1D 98.065 155 3 0 4419 4573 481386769 481386615 3.540000e-68 270.0
25 TraesCS1A01G422100 chr1B 92.686 2420 130 22 4573 6963 669757141 669754740 0.000000e+00 3445.0
26 TraesCS1A01G422100 chr1B 93.065 1716 93 9 1642 3332 669760297 669758583 0.000000e+00 2486.0
27 TraesCS1A01G422100 chr1B 86.038 1898 186 37 4759 6623 635924061 635925912 0.000000e+00 1964.0
28 TraesCS1A01G422100 chr1B 93.436 975 52 7 3343 4316 669758414 669757451 0.000000e+00 1435.0
29 TraesCS1A01G422100 chr1B 82.222 1755 220 45 2616 4316 635921934 635923650 0.000000e+00 1428.0
30 TraesCS1A01G422100 chr1B 89.601 577 58 2 1 576 504679957 504680532 0.000000e+00 732.0
31 TraesCS1A01G422100 chr1B 84.751 623 67 17 1933 2543 635921298 635921904 3.980000e-167 599.0
32 TraesCS1A01G422100 chr1B 92.754 414 17 9 660 1064 669768884 669768475 3.100000e-163 586.0
33 TraesCS1A01G422100 chr1B 91.475 434 20 12 660 1087 669764746 669764324 1.440000e-161 580.0
34 TraesCS1A01G422100 chr1B 88.955 335 27 9 2039 2363 635435743 635436077 9.300000e-109 405.0
35 TraesCS1A01G422100 chr1B 85.674 356 37 6 4419 4762 635923648 635924001 5.680000e-96 363.0
36 TraesCS1A01G422100 chr1B 84.066 364 31 15 743 1085 635920002 635920359 7.450000e-85 326.0
37 TraesCS1A01G422100 chr1B 82.967 364 35 15 743 1085 635432834 635433191 3.490000e-78 303.0
38 TraesCS1A01G422100 chr1B 90.000 210 10 8 660 858 669761092 669760883 2.130000e-65 261.0
39 TraesCS1A01G422100 chr1B 88.785 214 16 3 1338 1551 669760676 669760471 9.910000e-64 255.0
40 TraesCS1A01G422100 chr1B 94.631 149 7 1 940 1087 669760854 669760706 6.010000e-56 230.0
41 TraesCS1A01G422100 chr1B 90.506 158 7 2 4419 4573 669757453 669757301 1.310000e-47 202.0
42 TraesCS1A01G422100 chr1B 95.763 118 5 0 4309 4426 359907351 359907234 2.840000e-44 191.0
43 TraesCS1A01G422100 chr3A 96.021 578 23 0 1 578 712291948 712292525 0.000000e+00 941.0
44 TraesCS1A01G422100 chr5A 95.329 578 27 0 1 578 688274228 688274805 0.000000e+00 918.0
45 TraesCS1A01G422100 chr5A 97.414 116 3 0 4312 4427 455465757 455465642 1.690000e-46 198.0
46 TraesCS1A01G422100 chr5B 94.810 578 30 0 1 578 454354687 454355264 0.000000e+00 902.0
47 TraesCS1A01G422100 chr6B 92.267 569 44 0 1 569 45916785 45917353 0.000000e+00 808.0
48 TraesCS1A01G422100 chr6B 90.972 576 50 2 1 576 716704162 716703589 0.000000e+00 774.0
49 TraesCS1A01G422100 chr5D 91.334 577 48 2 1 575 483628212 483628788 0.000000e+00 787.0
50 TraesCS1A01G422100 chr3B 98.198 111 2 0 4313 4423 12156860 12156970 2.190000e-45 195.0
51 TraesCS1A01G422100 chr2A 98.198 111 2 0 4314 4424 96153218 96153108 2.190000e-45 195.0
52 TraesCS1A01G422100 chr2A 96.581 117 4 0 4314 4430 448553180 448553064 2.190000e-45 195.0
53 TraesCS1A01G422100 chr2A 81.609 87 5 10 4394 4471 532494980 532494896 2.320000e-05 62.1
54 TraesCS1A01G422100 chr6D 95.763 118 5 0 4303 4420 464671979 464671862 2.840000e-44 191.0
55 TraesCS1A01G422100 chr2D 95.763 118 5 0 4314 4431 107719707 107719590 2.840000e-44 191.0
56 TraesCS1A01G422100 chr3D 95.000 120 5 1 4314 4433 350668495 350668377 3.670000e-43 187.0
57 TraesCS1A01G422100 chr3D 91.241 137 9 3 4314 4447 98597493 98597629 4.740000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G422100 chr1A 577840058 577847755 7697 True 3471.600000 11758 100.000000 1 7698 4 chr1A.!!$R1 7697
1 TraesCS1A01G422100 chr1A 82088870 82089447 577 False 952.000000 952 96.367000 1 578 1 chr1A.!!$F1 577
2 TraesCS1A01G422100 chr1A 393483476 393484048 572 False 929.000000 929 95.848000 1 578 1 chr1A.!!$F2 577
3 TraesCS1A01G422100 chr1A 553535723 553542072 6349 False 537.875000 1897 85.403375 743 6964 8 chr1A.!!$F3 6221
4 TraesCS1A01G422100 chr1D 481383216 481390128 6912 True 1433.571429 4412 93.726571 599 7698 7 chr1D.!!$R1 7099
5 TraesCS1A01G422100 chr1D 461902228 461908014 5786 False 1102.000000 1997 83.773250 740 6945 4 chr1D.!!$F1 6205
6 TraesCS1A01G422100 chr1B 669754740 669768884 14144 True 1053.333333 3445 91.926444 660 6963 9 chr1B.!!$R2 6303
7 TraesCS1A01G422100 chr1B 635920002 635925912 5910 False 936.000000 1964 84.550200 743 6623 5 chr1B.!!$F3 5880
8 TraesCS1A01G422100 chr1B 504679957 504680532 575 False 732.000000 732 89.601000 1 576 1 chr1B.!!$F1 575
9 TraesCS1A01G422100 chr1B 635432834 635436077 3243 False 354.000000 405 85.961000 743 2363 2 chr1B.!!$F2 1620
10 TraesCS1A01G422100 chr3A 712291948 712292525 577 False 941.000000 941 96.021000 1 578 1 chr3A.!!$F1 577
11 TraesCS1A01G422100 chr5A 688274228 688274805 577 False 918.000000 918 95.329000 1 578 1 chr5A.!!$F1 577
12 TraesCS1A01G422100 chr5B 454354687 454355264 577 False 902.000000 902 94.810000 1 578 1 chr5B.!!$F1 577
13 TraesCS1A01G422100 chr6B 45916785 45917353 568 False 808.000000 808 92.267000 1 569 1 chr6B.!!$F1 568
14 TraesCS1A01G422100 chr6B 716703589 716704162 573 True 774.000000 774 90.972000 1 576 1 chr6B.!!$R1 575
15 TraesCS1A01G422100 chr5D 483628212 483628788 576 False 787.000000 787 91.334000 1 575 1 chr5D.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 676 0.409484 AACTATGGCAAACAGGGGCT 59.591 50.000 0.00 0.00 0.00 5.19 F
907 935 1.448013 GCCGAGGCTTGAGGTACAC 60.448 63.158 6.90 0.00 38.26 2.90 F
2357 12051 0.532573 ACGGTCAGTATCTGCAGTGG 59.467 55.000 14.67 0.19 0.00 4.00 F
3040 12910 1.212688 TGGGGTCTTGATGGTATGCAG 59.787 52.381 0.00 0.00 0.00 4.41 F
4323 14515 0.741915 GCTCTCTGTTACTCCCTCCG 59.258 60.000 0.00 0.00 0.00 4.63 F
4328 14520 1.203087 TCTGTTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53 F
4407 14599 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55 F
5589 16352 1.471287 CACAACATGGTCAGCTGATGG 59.529 52.381 21.47 12.01 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 11455 1.204704 TCATGACCGTGCAGTTCCTAG 59.795 52.381 0.00 0.00 0.00 3.02 R
2778 12488 0.801251 GCAGAAGCCAAGCTACACAG 59.199 55.000 0.00 0.00 38.25 3.66 R
3967 14078 1.538204 GGGAACGATATGAAGCGCTCA 60.538 52.381 12.06 11.46 38.29 4.26 R
4403 14595 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55 R
6240 17030 2.835156 TGGAATCCGACACCTGAACATA 59.165 45.455 0.00 0.00 0.00 2.29 R
6488 17303 3.738429 TAGCGGTGCTGCATGCGAT 62.738 57.895 14.09 9.49 46.63 4.58 R
6536 17351 2.438795 AGACGGGTCGAGGAGCTC 60.439 66.667 4.71 4.71 34.09 4.09 R
6963 17842 0.036952 AGTGCGCTAACATGAGCAGT 60.037 50.000 9.73 3.23 42.86 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.040616 GGACACCTTCGGAGAGATATAAAGAA 59.959 42.308 0.00 0.00 38.43 2.52
117 118 5.379706 AATACCTTTAGCTCTGCTGGATT 57.620 39.130 1.96 0.00 40.10 3.01
132 133 5.649265 TGCTGGATTAGATATCTCCACTCT 58.351 41.667 8.95 0.00 35.29 3.24
135 136 6.210385 GCTGGATTAGATATCTCCACTCTCAA 59.790 42.308 8.95 0.00 35.29 3.02
150 151 5.186797 CCACTCTCAAGGAATTCTGTAGAGT 59.813 44.000 18.86 18.86 43.47 3.24
177 179 3.753842 TCATATTTTTCTTGCGCCGAAC 58.246 40.909 4.18 0.00 0.00 3.95
306 309 7.458409 TCAGCTTCTCATTGATTTTTAGCTT 57.542 32.000 0.00 0.00 33.14 3.74
466 469 2.202797 CGTAGCGCTGCCACAGAT 60.203 61.111 22.90 0.00 32.44 2.90
482 485 3.918253 GATGTGCACGGAGGGCCAA 62.918 63.158 13.13 0.00 0.00 4.52
578 581 0.655733 AGTCCGCTCGTTGTTTTGTG 59.344 50.000 0.00 0.00 0.00 3.33
579 582 0.653636 GTCCGCTCGTTGTTTTGTGA 59.346 50.000 0.00 0.00 0.00 3.58
580 583 1.263217 GTCCGCTCGTTGTTTTGTGAT 59.737 47.619 0.00 0.00 0.00 3.06
581 584 1.262950 TCCGCTCGTTGTTTTGTGATG 59.737 47.619 0.00 0.00 0.00 3.07
582 585 1.662876 CCGCTCGTTGTTTTGTGATGG 60.663 52.381 0.00 0.00 0.00 3.51
583 586 1.662876 CGCTCGTTGTTTTGTGATGGG 60.663 52.381 0.00 0.00 0.00 4.00
584 587 1.606668 GCTCGTTGTTTTGTGATGGGA 59.393 47.619 0.00 0.00 0.00 4.37
585 588 2.228822 GCTCGTTGTTTTGTGATGGGAT 59.771 45.455 0.00 0.00 0.00 3.85
586 589 3.305335 GCTCGTTGTTTTGTGATGGGATT 60.305 43.478 0.00 0.00 0.00 3.01
587 590 4.795962 GCTCGTTGTTTTGTGATGGGATTT 60.796 41.667 0.00 0.00 0.00 2.17
588 591 5.269505 TCGTTGTTTTGTGATGGGATTTT 57.730 34.783 0.00 0.00 0.00 1.82
589 592 6.392625 TCGTTGTTTTGTGATGGGATTTTA 57.607 33.333 0.00 0.00 0.00 1.52
590 593 6.987386 TCGTTGTTTTGTGATGGGATTTTAT 58.013 32.000 0.00 0.00 0.00 1.40
591 594 8.112016 TCGTTGTTTTGTGATGGGATTTTATA 57.888 30.769 0.00 0.00 0.00 0.98
592 595 8.577296 TCGTTGTTTTGTGATGGGATTTTATAA 58.423 29.630 0.00 0.00 0.00 0.98
593 596 9.197694 CGTTGTTTTGTGATGGGATTTTATAAA 57.802 29.630 0.00 0.00 0.00 1.40
625 628 4.928615 CCATTTTCAAACGGTGCATACATT 59.071 37.500 0.00 0.00 0.00 2.71
640 643 7.496591 GGTGCATACATTCATCCAAATTCAAAT 59.503 33.333 0.00 0.00 0.00 2.32
641 644 8.332464 GTGCATACATTCATCCAAATTCAAATG 58.668 33.333 0.00 0.00 0.00 2.32
642 645 7.496263 TGCATACATTCATCCAAATTCAAATGG 59.504 33.333 0.00 0.00 38.09 3.16
643 646 7.519328 GCATACATTCATCCAAATTCAAATGGC 60.519 37.037 0.00 0.00 36.62 4.40
645 648 3.523606 TCATCCAAATTCAAATGGCCG 57.476 42.857 0.00 0.00 36.62 6.13
647 650 3.119173 TCATCCAAATTCAAATGGCCGAC 60.119 43.478 0.00 0.00 36.62 4.79
648 651 2.524306 TCCAAATTCAAATGGCCGACT 58.476 42.857 0.00 0.00 36.62 4.18
649 652 3.691575 TCCAAATTCAAATGGCCGACTA 58.308 40.909 0.00 0.00 36.62 2.59
651 654 3.438360 CAAATTCAAATGGCCGACTAGC 58.562 45.455 0.00 0.00 0.00 3.42
673 676 0.409484 AACTATGGCAAACAGGGGCT 59.591 50.000 0.00 0.00 0.00 5.19
749 753 4.499116 TCCTAGCCCCTCCCTGCC 62.499 72.222 0.00 0.00 0.00 4.85
781 789 4.789075 GAGCCGCCGTAGAACGCA 62.789 66.667 0.00 0.00 40.91 5.24
906 934 2.978824 GCCGAGGCTTGAGGTACA 59.021 61.111 6.90 0.00 38.26 2.90
907 935 1.448013 GCCGAGGCTTGAGGTACAC 60.448 63.158 6.90 0.00 38.26 2.90
1570 9383 7.838696 TCTGGATAATTTGGTGTGGACATATTT 59.161 33.333 0.00 0.00 0.00 1.40
1571 9384 7.780064 TGGATAATTTGGTGTGGACATATTTG 58.220 34.615 0.00 0.00 0.00 2.32
1575 9388 5.703978 TTTGGTGTGGACATATTTGTGAG 57.296 39.130 0.00 0.00 35.79 3.51
1576 9389 3.684908 TGGTGTGGACATATTTGTGAGG 58.315 45.455 0.00 0.00 35.79 3.86
1578 9391 4.018506 TGGTGTGGACATATTTGTGAGGAT 60.019 41.667 0.00 0.00 35.79 3.24
1582 9395 7.122055 GGTGTGGACATATTTGTGAGGATTTTA 59.878 37.037 0.00 0.00 35.79 1.52
1618 9431 6.371809 TGTTAATATGCGAGGGAAATTGTC 57.628 37.500 0.00 0.00 0.00 3.18
1650 10808 7.840342 TTGTAAAATTGTTTGTGATTGCTGT 57.160 28.000 0.00 0.00 0.00 4.40
1652 10810 6.815641 TGTAAAATTGTTTGTGATTGCTGTGT 59.184 30.769 0.00 0.00 0.00 3.72
1973 11455 1.070758 TCTGTGCAACTTCTCCCACTC 59.929 52.381 0.00 0.00 38.04 3.51
1993 11475 1.204704 CTAGGAACTGCACGGTCATGA 59.795 52.381 0.00 0.00 41.52 3.07
2014 11500 4.039973 TGAGGTAACAGTACTCAAGGTTGG 59.960 45.833 6.58 0.00 41.41 3.77
2034 11522 6.606395 GGTTGGACCTTAGATTAGAGTGAGTA 59.394 42.308 0.00 0.00 34.73 2.59
2125 11818 3.902261 TCTGTGTGCTGCTTGTTATTG 57.098 42.857 0.00 0.00 0.00 1.90
2188 11882 7.331026 TCTTATGAACCCACTGAATTAGTCTG 58.669 38.462 0.00 0.00 37.60 3.51
2357 12051 0.532573 ACGGTCAGTATCTGCAGTGG 59.467 55.000 14.67 0.19 0.00 4.00
2589 12299 9.271828 ACCAATTGAGAAAATATGTTTTGTTCC 57.728 29.630 7.12 0.00 37.65 3.62
2641 12351 2.238521 TGACTTTTCCAGGTGAATGGC 58.761 47.619 0.00 0.00 40.41 4.40
2778 12488 5.355910 TGTTCAGTTTCTTTTGGTGTCCTAC 59.644 40.000 0.00 0.00 0.00 3.18
3007 12877 3.589988 CGATGCTATTGGTATCTGTCCC 58.410 50.000 0.00 0.00 35.36 4.46
3040 12910 1.212688 TGGGGTCTTGATGGTATGCAG 59.787 52.381 0.00 0.00 0.00 4.41
3077 12947 3.813529 GACACTTTGTCCCTTTGATCG 57.186 47.619 0.00 0.00 41.37 3.69
3193 13063 4.953940 TGGTCGATCCATGTATCATGAA 57.046 40.909 0.00 0.00 41.93 2.57
3213 13083 2.222027 AGAGGAGAAAAACAGGTTGCG 58.778 47.619 0.00 0.00 0.00 4.85
3232 13102 4.270834 TGCGTGTAGGCCCATTTAAATTA 58.729 39.130 0.00 0.00 0.00 1.40
3445 13494 9.142014 GCCACTCACTATCTGGATATATAAGAT 57.858 37.037 12.67 12.67 34.99 2.40
3575 13649 8.197988 ACTCACATATCGTAGGATTGTTTTTC 57.802 34.615 2.78 0.00 34.00 2.29
3637 13721 2.431419 GACTAAGGGAGTGCCTAGGTTC 59.569 54.545 11.31 6.11 39.06 3.62
3758 13861 4.450053 AGCTATGCCAAAGATTCTGAGTC 58.550 43.478 0.00 0.00 0.00 3.36
3862 13965 5.468746 TGTATCTGTTACAACTTGGCTCAAC 59.531 40.000 0.00 0.00 37.87 3.18
3967 14078 2.479566 AGGCGTTGAGTGATGATTGT 57.520 45.000 0.00 0.00 0.00 2.71
4023 14134 2.099756 ACTCAAGCAAAGCAGGTTCAAC 59.900 45.455 0.00 0.00 0.00 3.18
4027 14138 2.930950 AGCAAAGCAGGTTCAACACTA 58.069 42.857 0.00 0.00 0.00 2.74
4028 14139 3.490348 AGCAAAGCAGGTTCAACACTAT 58.510 40.909 0.00 0.00 0.00 2.12
4029 14140 4.651778 AGCAAAGCAGGTTCAACACTATA 58.348 39.130 0.00 0.00 0.00 1.31
4076 14187 6.017605 ACAAATTGACGATCTTATCAGGCATC 60.018 38.462 0.00 0.00 0.00 3.91
4313 14505 5.471456 CACACCTTTCTTTATGCTCTCTGTT 59.529 40.000 0.00 0.00 0.00 3.16
4314 14506 6.650807 CACACCTTTCTTTATGCTCTCTGTTA 59.349 38.462 0.00 0.00 0.00 2.41
4315 14507 6.651225 ACACCTTTCTTTATGCTCTCTGTTAC 59.349 38.462 0.00 0.00 0.00 2.50
4316 14508 6.876257 CACCTTTCTTTATGCTCTCTGTTACT 59.124 38.462 0.00 0.00 0.00 2.24
4317 14509 7.064016 CACCTTTCTTTATGCTCTCTGTTACTC 59.936 40.741 0.00 0.00 0.00 2.59
4318 14510 6.536941 CCTTTCTTTATGCTCTCTGTTACTCC 59.463 42.308 0.00 0.00 0.00 3.85
4319 14511 5.599999 TCTTTATGCTCTCTGTTACTCCC 57.400 43.478 0.00 0.00 0.00 4.30
4320 14512 5.273208 TCTTTATGCTCTCTGTTACTCCCT 58.727 41.667 0.00 0.00 0.00 4.20
4321 14513 5.361285 TCTTTATGCTCTCTGTTACTCCCTC 59.639 44.000 0.00 0.00 0.00 4.30
4322 14514 1.853963 TGCTCTCTGTTACTCCCTCC 58.146 55.000 0.00 0.00 0.00 4.30
4323 14515 0.741915 GCTCTCTGTTACTCCCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
4324 14516 1.956159 GCTCTCTGTTACTCCCTCCGT 60.956 57.143 0.00 0.00 0.00 4.69
4325 14517 2.448453 CTCTCTGTTACTCCCTCCGTT 58.552 52.381 0.00 0.00 0.00 4.44
4326 14518 2.424246 CTCTCTGTTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 0.00 3.95
4327 14519 1.477295 CTCTGTTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
4328 14520 1.203087 TCTGTTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4329 14521 1.621814 CTGTTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4330 14522 2.038033 CTGTTACTCCCTCCGTTCCAAA 59.962 50.000 0.00 0.00 0.00 3.28
4331 14523 2.640826 TGTTACTCCCTCCGTTCCAAAT 59.359 45.455 0.00 0.00 0.00 2.32
4332 14524 3.073356 TGTTACTCCCTCCGTTCCAAATT 59.927 43.478 0.00 0.00 0.00 1.82
4333 14525 4.286549 TGTTACTCCCTCCGTTCCAAATTA 59.713 41.667 0.00 0.00 0.00 1.40
4334 14526 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4335 14527 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4336 14528 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4337 14529 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4338 14530 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4339 14531 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4340 14532 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4341 14533 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4342 14534 3.190327 TCCGTTCCAAATTACTCGTCGTA 59.810 43.478 0.00 0.00 0.00 3.43
4343 14535 3.545078 CCGTTCCAAATTACTCGTCGTAG 59.455 47.826 0.00 0.00 0.00 3.51
4344 14536 4.406069 CGTTCCAAATTACTCGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
4345 14537 4.853196 CGTTCCAAATTACTCGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
4346 14538 5.514204 CGTTCCAAATTACTCGTCGTAGAAT 59.486 40.000 0.00 0.00 39.69 2.40
4347 14539 6.034256 CGTTCCAAATTACTCGTCGTAGAATT 59.966 38.462 0.00 0.00 39.69 2.17
4348 14540 6.880822 TCCAAATTACTCGTCGTAGAATTG 57.119 37.500 0.00 0.00 39.69 2.32
4349 14541 5.808540 TCCAAATTACTCGTCGTAGAATTGG 59.191 40.000 14.34 14.34 39.69 3.16
4350 14542 5.808540 CCAAATTACTCGTCGTAGAATTGGA 59.191 40.000 14.84 0.00 39.69 3.53
4351 14543 6.479001 CCAAATTACTCGTCGTAGAATTGGAT 59.521 38.462 14.84 0.00 39.69 3.41
4352 14544 7.337718 CAAATTACTCGTCGTAGAATTGGATG 58.662 38.462 0.00 0.00 39.69 3.51
4353 14545 5.571784 TTACTCGTCGTAGAATTGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
4354 14546 6.682423 TTACTCGTCGTAGAATTGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
4355 14547 5.769484 ACTCGTCGTAGAATTGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
4356 14548 5.759963 ACTCGTCGTAGAATTGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
4357 14549 5.531659 ACTCGTCGTAGAATTGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
4358 14550 6.709397 ACTCGTCGTAGAATTGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
4359 14551 7.095144 ACTCGTCGTAGAATTGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
4360 14552 6.932960 TCGTCGTAGAATTGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
4361 14553 7.443272 TCGTCGTAGAATTGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
4362 14554 7.534578 CGTCGTAGAATTGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
4363 14555 8.569641 GTCGTAGAATTGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
4364 14556 9.788889 TCGTAGAATTGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
4392 14584 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
4393 14585 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
4394 14586 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
4395 14587 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
4396 14588 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
4397 14589 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
4398 14590 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
4399 14591 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
4400 14592 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
4401 14593 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
4402 14594 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
4403 14595 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
4404 14596 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
4405 14597 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
4406 14598 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
4407 14599 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
4408 14600 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
4409 14601 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
4664 15188 8.065473 ACATAGATGGCATGTTATTCAAAACA 57.935 30.769 3.81 0.00 43.16 2.83
4874 15510 2.172505 TGACTCTTCTTTGGTGGCTTCA 59.827 45.455 0.00 0.00 0.00 3.02
5034 15789 6.936335 AGGCCATCTTTCAAAATTTAAGTTGG 59.064 34.615 17.61 17.61 39.82 3.77
5074 15829 9.614792 TGAGTATCTTTTATAAGAAAAGGAGGC 57.385 33.333 8.83 0.00 43.32 4.70
5259 16018 3.526931 TTCGTCCTTTGCATAGAGGAG 57.473 47.619 12.71 8.46 42.49 3.69
5339 16102 8.682710 GCATTGGAAGAAGTTATTTACCACATA 58.317 33.333 0.00 0.00 0.00 2.29
5444 16207 3.716872 TGGTTCTTTCAGGAGAAGGTTCT 59.283 43.478 0.00 0.00 41.00 3.01
5529 16292 4.159879 AGGAGACGTGTAGGAAGGTAATTG 59.840 45.833 0.00 0.00 0.00 2.32
5539 16302 7.117956 GTGTAGGAAGGTAATTGAAGACAGAAC 59.882 40.741 0.00 0.00 0.00 3.01
5549 16312 4.406648 TGAAGACAGAACTGCTCTTTCA 57.593 40.909 15.13 11.05 33.87 2.69
5589 16352 1.471287 CACAACATGGTCAGCTGATGG 59.529 52.381 21.47 12.01 0.00 3.51
5595 16358 3.201290 CATGGTCAGCTGATGGACTTAC 58.799 50.000 21.47 4.41 34.49 2.34
5609 16372 7.506114 TGATGGACTTACTAGAGTTGTTTTGT 58.494 34.615 0.00 0.00 0.00 2.83
5611 16374 6.285990 TGGACTTACTAGAGTTGTTTTGTCC 58.714 40.000 0.00 0.00 40.20 4.02
5612 16375 6.099269 TGGACTTACTAGAGTTGTTTTGTCCT 59.901 38.462 0.00 0.00 40.37 3.85
5705 16468 2.224523 TGAGGCTCGTGTTCCATTTCTT 60.225 45.455 10.42 0.00 0.00 2.52
5999 16787 2.687425 TGTGTTACTTGCACATGCTTGT 59.313 40.909 5.31 0.00 41.32 3.16
6000 16788 3.879892 TGTGTTACTTGCACATGCTTGTA 59.120 39.130 4.73 5.58 41.32 2.41
6001 16789 4.219033 GTGTTACTTGCACATGCTTGTAC 58.781 43.478 4.73 0.12 42.66 2.90
6100 16888 2.025416 TGGGTACAGTTGGATTGATGGG 60.025 50.000 0.00 0.00 0.00 4.00
6118 16906 2.109128 TGGGTTGAAGGACCATGCTAAA 59.891 45.455 0.00 0.00 41.65 1.85
6213 17001 6.043854 TGCTTTTGTTTCACTTTTTACCCT 57.956 33.333 0.00 0.00 0.00 4.34
6240 17030 9.775854 CATCAGAATTGACAGTATCTCCTATTT 57.224 33.333 0.00 0.00 35.83 1.40
6488 17303 4.980592 TGCCAGGAGGTCCCAGCA 62.981 66.667 6.49 6.49 42.09 4.41
6664 17482 1.069022 CCTGCACATGACGTCAAAAGG 60.069 52.381 24.13 19.09 0.00 3.11
6703 17524 2.911484 GCAGCTGCTGTATAACCTTCT 58.089 47.619 31.33 0.00 38.21 2.85
6788 17631 2.747989 CAGTCATGCAGTGCAGAAATCT 59.252 45.455 24.20 13.38 43.65 2.40
6948 17813 8.586570 CAAACTTGCACTAATAAATTCCAACA 57.413 30.769 0.00 0.00 0.00 3.33
6951 17816 8.761575 ACTTGCACTAATAAATTCCAACAATG 57.238 30.769 0.00 0.00 0.00 2.82
6952 17817 8.584157 ACTTGCACTAATAAATTCCAACAATGA 58.416 29.630 0.00 0.00 0.00 2.57
6954 17819 8.929827 TGCACTAATAAATTCCAACAATGATG 57.070 30.769 0.00 0.00 0.00 3.07
6964 17843 9.807649 AAATTCCAACAATGATGCTTTCTATAC 57.192 29.630 0.00 0.00 0.00 1.47
6973 17852 5.922053 TGATGCTTTCTATACTGCTCATGT 58.078 37.500 0.00 0.00 0.00 3.21
6982 17861 0.036952 ACTGCTCATGTTAGCGCACT 60.037 50.000 11.47 0.00 45.85 4.40
6985 17864 2.204237 TGCTCATGTTAGCGCACTATG 58.796 47.619 11.47 8.86 45.85 2.23
6987 17866 2.219674 GCTCATGTTAGCGCACTATGAC 59.780 50.000 11.47 0.00 31.76 3.06
6989 17868 3.706698 TCATGTTAGCGCACTATGACTC 58.293 45.455 11.47 0.00 0.00 3.36
6990 17869 3.381590 TCATGTTAGCGCACTATGACTCT 59.618 43.478 11.47 0.00 0.00 3.24
6992 17871 2.223272 TGTTAGCGCACTATGACTCTCG 60.223 50.000 11.47 0.00 0.00 4.04
6995 17874 1.725557 GCGCACTATGACTCTCGGGA 61.726 60.000 0.30 0.00 0.00 5.14
6996 17875 0.738975 CGCACTATGACTCTCGGGAA 59.261 55.000 0.00 0.00 0.00 3.97
6997 17876 1.534175 CGCACTATGACTCTCGGGAAC 60.534 57.143 0.00 0.00 0.00 3.62
6998 17877 1.476891 GCACTATGACTCTCGGGAACA 59.523 52.381 0.00 0.00 0.00 3.18
6999 17878 2.735762 GCACTATGACTCTCGGGAACAC 60.736 54.545 0.00 0.00 0.00 3.32
7000 17879 2.755655 CACTATGACTCTCGGGAACACT 59.244 50.000 0.00 0.00 0.00 3.55
7019 17908 3.829601 CACTTCTAGTCTGGAACCTCACT 59.170 47.826 0.00 0.00 0.00 3.41
7023 17912 4.082845 TCTAGTCTGGAACCTCACTGAAG 58.917 47.826 0.00 0.00 0.00 3.02
7029 17918 2.029020 TGGAACCTCACTGAAGATGTCG 60.029 50.000 0.00 0.00 0.00 4.35
7035 17924 4.058124 CCTCACTGAAGATGTCGTGAAAA 58.942 43.478 0.00 0.00 38.45 2.29
7040 17929 7.132213 TCACTGAAGATGTCGTGAAAATTTTC 58.868 34.615 21.60 21.60 37.07 2.29
7066 17955 5.649782 AATAAGAGAAACCAAGTGGCATG 57.350 39.130 0.00 0.00 39.32 4.06
7071 17960 0.104671 AAACCAAGTGGCATGCACAC 59.895 50.000 23.70 23.70 39.32 3.82
7073 17962 2.652530 CAAGTGGCATGCACACCC 59.347 61.111 25.98 9.29 39.63 4.61
7080 17969 0.956633 GGCATGCACACCCATATCAG 59.043 55.000 21.36 0.00 0.00 2.90
7084 17973 3.483421 CATGCACACCCATATCAGTCAT 58.517 45.455 0.00 0.00 0.00 3.06
7085 17974 2.921821 TGCACACCCATATCAGTCATG 58.078 47.619 0.00 0.00 0.00 3.07
7086 17975 2.239402 TGCACACCCATATCAGTCATGT 59.761 45.455 0.00 0.00 0.00 3.21
7087 17976 3.282021 GCACACCCATATCAGTCATGTT 58.718 45.455 0.00 0.00 0.00 2.71
7088 17977 4.080638 TGCACACCCATATCAGTCATGTTA 60.081 41.667 0.00 0.00 0.00 2.41
7089 17978 4.273480 GCACACCCATATCAGTCATGTTAC 59.727 45.833 0.00 0.00 0.00 2.50
7091 17980 5.525012 CACACCCATATCAGTCATGTTACAG 59.475 44.000 0.00 0.00 0.00 2.74
7092 17981 5.425217 ACACCCATATCAGTCATGTTACAGA 59.575 40.000 0.00 0.00 0.00 3.41
7093 17982 6.070251 ACACCCATATCAGTCATGTTACAGAA 60.070 38.462 0.00 0.00 0.00 3.02
7094 17983 6.994496 CACCCATATCAGTCATGTTACAGAAT 59.006 38.462 0.00 0.00 0.00 2.40
7095 17984 8.150296 CACCCATATCAGTCATGTTACAGAATA 58.850 37.037 0.00 0.00 0.00 1.75
7096 17985 8.884323 ACCCATATCAGTCATGTTACAGAATAT 58.116 33.333 0.00 0.00 0.00 1.28
7097 17986 9.730705 CCCATATCAGTCATGTTACAGAATATT 57.269 33.333 0.00 0.00 0.00 1.28
7106 17995 9.520204 GTCATGTTACAGAATATTCAATTTGGG 57.480 33.333 17.56 1.54 0.00 4.12
7107 17996 8.196771 TCATGTTACAGAATATTCAATTTGGGC 58.803 33.333 17.56 3.23 0.00 5.36
7108 17997 7.716799 TGTTACAGAATATTCAATTTGGGCT 57.283 32.000 17.56 0.00 0.00 5.19
7109 17998 7.546358 TGTTACAGAATATTCAATTTGGGCTG 58.454 34.615 17.56 6.18 0.00 4.85
7110 17999 7.178274 TGTTACAGAATATTCAATTTGGGCTGT 59.822 33.333 17.56 11.26 37.73 4.40
7111 18000 8.682710 GTTACAGAATATTCAATTTGGGCTGTA 58.317 33.333 17.56 10.37 35.83 2.74
7112 18001 7.902920 ACAGAATATTCAATTTGGGCTGTAT 57.097 32.000 17.56 0.00 32.86 2.29
7113 18002 8.310122 ACAGAATATTCAATTTGGGCTGTATT 57.690 30.769 17.56 0.00 32.86 1.89
7114 18003 9.420118 ACAGAATATTCAATTTGGGCTGTATTA 57.580 29.630 17.56 0.00 32.86 0.98
7117 18006 9.196552 GAATATTCAATTTGGGCTGTATTAAGC 57.803 33.333 10.68 0.00 42.75 3.09
7118 18007 4.630894 TCAATTTGGGCTGTATTAAGCG 57.369 40.909 0.00 0.00 44.52 4.68
7119 18008 3.380004 TCAATTTGGGCTGTATTAAGCGG 59.620 43.478 0.00 0.00 44.52 5.52
7120 18009 2.500392 TTTGGGCTGTATTAAGCGGT 57.500 45.000 0.00 0.00 44.52 5.68
7121 18010 2.500392 TTGGGCTGTATTAAGCGGTT 57.500 45.000 4.76 4.76 44.52 4.44
7122 18011 2.500392 TGGGCTGTATTAAGCGGTTT 57.500 45.000 4.64 0.00 44.52 3.27
7140 18029 4.541779 GGTTTGCATTCAACATGTTCGTA 58.458 39.130 8.48 0.00 30.75 3.43
7158 18047 6.876789 TGTTCGTATTCAATCTTAGCTTGGAA 59.123 34.615 0.00 0.00 0.00 3.53
7169 18058 9.390795 CAATCTTAGCTTGGAATAATTCGAATG 57.609 33.333 12.25 0.00 0.00 2.67
7172 18061 9.778741 TCTTAGCTTGGAATAATTCGAATGTAT 57.221 29.630 12.25 8.85 0.00 2.29
7180 18069 8.075574 TGGAATAATTCGAATGTATTGTCATGC 58.924 33.333 12.25 5.44 0.00 4.06
7187 18076 6.781138 TCGAATGTATTGTCATGCTTTAACC 58.219 36.000 0.00 0.00 0.00 2.85
7196 18085 4.253685 GTCATGCTTTAACCTGCAGTCTA 58.746 43.478 13.81 0.04 42.74 2.59
7200 18089 5.414789 TGCTTTAACCTGCAGTCTATACA 57.585 39.130 13.81 0.00 34.84 2.29
7201 18090 5.175859 TGCTTTAACCTGCAGTCTATACAC 58.824 41.667 13.81 0.00 34.84 2.90
7210 18099 2.455032 CAGTCTATACACGCTGACTGC 58.545 52.381 8.68 0.00 46.09 4.40
7225 18114 0.661020 ACTGCAGTTCCCGTTTTTCG 59.339 50.000 15.25 0.00 39.52 3.46
7253 18142 5.946377 GGACCAATCTTACATTTTGGAGACT 59.054 40.000 7.85 0.00 42.02 3.24
7261 18170 6.374333 TCTTACATTTTGGAGACTTATGTGGC 59.626 38.462 0.00 0.00 0.00 5.01
7280 18189 3.709141 TGGCACTATAGCACTGTGGAATA 59.291 43.478 10.21 0.00 35.83 1.75
7285 18194 8.424918 GGCACTATAGCACTGTGGAATATATAT 58.575 37.037 10.21 0.00 35.83 0.86
7331 18240 7.023575 CACATTCTTATCCTTAAAGCACACAC 58.976 38.462 0.00 0.00 0.00 3.82
7336 18246 8.232913 TCTTATCCTTAAAGCACACACTTTTT 57.767 30.769 0.00 0.00 40.32 1.94
7386 18296 5.993748 ACTCCTTTTGTCCTTGAAAACAA 57.006 34.783 0.00 0.00 33.74 2.83
7408 18318 5.957842 ACATTACCATGTCAATCACGTTT 57.042 34.783 0.00 0.00 39.69 3.60
7480 18390 4.130118 GTGGTCAGCGAATATCCTTCATT 58.870 43.478 0.00 0.00 0.00 2.57
7488 18398 4.972440 GCGAATATCCTTCATTGAAGCAAC 59.028 41.667 19.04 7.29 38.24 4.17
7505 18415 4.036518 AGCAACTGAGATCCAACCTATCT 58.963 43.478 0.00 0.00 36.40 1.98
7513 18423 0.249120 TCCAACCTATCTGGCACACG 59.751 55.000 0.00 0.00 40.22 4.49
7517 18427 0.391661 ACCTATCTGGCACACGCAAG 60.392 55.000 0.00 0.00 41.00 4.01
7521 18431 6.434661 ACCTATCTGGCACACGCAAGTTAT 62.435 45.833 0.00 0.00 45.79 1.89
7611 18528 5.014755 ACATTCCAACCATAACCAGGTTCTA 59.985 40.000 8.57 0.00 45.98 2.10
7626 18543 2.740447 GGTTCTACACCGTGGACAAATC 59.260 50.000 3.03 0.00 35.12 2.17
7628 18545 3.587797 TCTACACCGTGGACAAATCTC 57.412 47.619 3.03 0.00 0.00 2.75
7632 18549 0.246635 ACCGTGGACAAATCTCGAGG 59.753 55.000 13.56 0.00 0.00 4.63
7635 18552 1.337823 CGTGGACAAATCTCGAGGGTT 60.338 52.381 13.56 5.36 0.00 4.11
7665 18582 4.158025 AGACCACCATTAGTAGAACTGACG 59.842 45.833 0.00 0.00 0.00 4.35
7667 18584 4.525487 ACCACCATTAGTAGAACTGACGAA 59.475 41.667 0.00 0.00 0.00 3.85
7690 18607 4.364415 AAAAACACGAAGCTTACTGCAA 57.636 36.364 0.00 0.00 45.94 4.08
7691 18608 4.568152 AAAACACGAAGCTTACTGCAAT 57.432 36.364 0.00 0.00 45.94 3.56
7692 18609 4.568152 AAACACGAAGCTTACTGCAATT 57.432 36.364 0.00 0.00 45.94 2.32
7695 18612 5.682943 ACACGAAGCTTACTGCAATTAAA 57.317 34.783 0.00 0.00 45.94 1.52
7696 18613 6.067263 ACACGAAGCTTACTGCAATTAAAA 57.933 33.333 0.00 0.00 45.94 1.52
7697 18614 6.142817 ACACGAAGCTTACTGCAATTAAAAG 58.857 36.000 0.00 0.00 45.94 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 8.231007 AGAATTCCTTGAGAGTGGAGATATCTA 58.769 37.037 4.89 0.00 33.46 1.98
132 133 9.035890 TGATAAAGACTCTACAGAATTCCTTGA 57.964 33.333 0.65 0.00 0.00 3.02
150 151 6.037720 TCGGCGCAAGAAAAATATGATAAAGA 59.962 34.615 10.83 0.00 43.02 2.52
177 179 1.205655 TCTTTCATCTCCGAGCCAGTG 59.794 52.381 0.00 0.00 0.00 3.66
385 388 0.533951 GGGATACGTTCGGGAGTGTT 59.466 55.000 0.00 0.00 37.60 3.32
466 469 4.947147 GTTGGCCCTCCGTGCACA 62.947 66.667 18.64 0.00 34.14 4.57
497 500 5.711036 ACGAGACTTTCCTTGATACAGTAGT 59.289 40.000 0.00 0.00 0.00 2.73
589 592 9.801873 CCGTTTGAAAATGGAGATAACATTTAT 57.198 29.630 8.12 0.00 45.07 1.40
590 593 8.798402 ACCGTTTGAAAATGGAGATAACATTTA 58.202 29.630 18.70 0.00 45.07 1.40
592 595 7.090173 CACCGTTTGAAAATGGAGATAACATT 58.910 34.615 18.70 0.00 45.89 2.71
593 596 6.620678 CACCGTTTGAAAATGGAGATAACAT 58.379 36.000 18.70 0.00 45.89 2.71
594 597 5.563867 GCACCGTTTGAAAATGGAGATAACA 60.564 40.000 18.70 0.00 45.89 2.41
595 598 4.857037 GCACCGTTTGAAAATGGAGATAAC 59.143 41.667 18.70 0.00 45.89 1.89
596 599 4.520874 TGCACCGTTTGAAAATGGAGATAA 59.479 37.500 18.70 0.96 45.89 1.75
597 600 4.075682 TGCACCGTTTGAAAATGGAGATA 58.924 39.130 18.70 3.71 45.89 1.98
611 614 2.997980 TGGATGAATGTATGCACCGTT 58.002 42.857 0.00 0.00 0.00 4.44
612 615 2.708216 TGGATGAATGTATGCACCGT 57.292 45.000 0.00 0.00 0.00 4.83
625 628 3.095332 TCGGCCATTTGAATTTGGATGA 58.905 40.909 2.24 0.00 34.81 2.92
642 645 1.583054 CCATAGTTTGGCTAGTCGGC 58.417 55.000 0.00 0.00 39.09 5.54
652 655 1.066929 GCCCCTGTTTGCCATAGTTTG 60.067 52.381 0.00 0.00 0.00 2.93
653 656 1.203174 AGCCCCTGTTTGCCATAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
654 657 0.409484 AGCCCCTGTTTGCCATAGTT 59.591 50.000 0.00 0.00 0.00 2.24
656 659 1.106285 GAAGCCCCTGTTTGCCATAG 58.894 55.000 0.00 0.00 0.00 2.23
657 660 0.679640 CGAAGCCCCTGTTTGCCATA 60.680 55.000 0.00 0.00 0.00 2.74
658 661 1.978617 CGAAGCCCCTGTTTGCCAT 60.979 57.895 0.00 0.00 0.00 4.40
659 662 2.597217 CGAAGCCCCTGTTTGCCA 60.597 61.111 0.00 0.00 0.00 4.92
660 663 2.597510 ACGAAGCCCCTGTTTGCC 60.598 61.111 0.00 0.00 0.00 4.52
661 664 2.644992 CACGAAGCCCCTGTTTGC 59.355 61.111 0.00 0.00 0.00 3.68
662 665 2.268076 CCCACGAAGCCCCTGTTTG 61.268 63.158 0.00 0.00 0.00 2.93
663 666 2.115266 CCCACGAAGCCCCTGTTT 59.885 61.111 0.00 0.00 0.00 2.83
749 753 2.490217 CTCGGTGGTGGTAGAGCG 59.510 66.667 0.00 0.00 34.44 5.03
889 917 1.448013 GTGTACCTCAAGCCTCGGC 60.448 63.158 0.00 0.00 42.33 5.54
906 934 3.296854 GAAAGAAACAGGGGAACAAGGT 58.703 45.455 0.00 0.00 0.00 3.50
907 935 2.628178 GGAAAGAAACAGGGGAACAAGG 59.372 50.000 0.00 0.00 0.00 3.61
909 937 3.390175 TGGAAAGAAACAGGGGAACAA 57.610 42.857 0.00 0.00 0.00 2.83
911 939 3.895041 TGAATGGAAAGAAACAGGGGAAC 59.105 43.478 0.00 0.00 0.00 3.62
912 940 4.151883 CTGAATGGAAAGAAACAGGGGAA 58.848 43.478 0.00 0.00 0.00 3.97
914 942 2.232208 GCTGAATGGAAAGAAACAGGGG 59.768 50.000 0.00 0.00 0.00 4.79
1545 9327 7.587037 AATATGTCCACACCAAATTATCCAG 57.413 36.000 0.00 0.00 0.00 3.86
1570 9383 9.166173 CAACTCATCTAACATAAAATCCTCACA 57.834 33.333 0.00 0.00 0.00 3.58
1571 9384 9.167311 ACAACTCATCTAACATAAAATCCTCAC 57.833 33.333 0.00 0.00 0.00 3.51
1582 9395 8.887036 TCGCATATTAACAACTCATCTAACAT 57.113 30.769 0.00 0.00 0.00 2.71
1618 9431 7.943952 TCACAAACAATTTTACAAAGTTGACG 58.056 30.769 14.53 6.67 37.69 4.35
1684 10842 3.197116 ACATACTCTGTTCCCTAAACCCG 59.803 47.826 0.00 0.00 37.03 5.28
1973 11455 1.204704 TCATGACCGTGCAGTTCCTAG 59.795 52.381 0.00 0.00 0.00 3.02
1993 11475 4.040095 GTCCAACCTTGAGTACTGTTACCT 59.960 45.833 0.00 0.00 0.00 3.08
2014 11500 8.400186 GTCAACTACTCACTCTAATCTAAGGTC 58.600 40.741 0.00 0.00 0.00 3.85
2057 11740 7.471721 TGAATCCAGTTTAATCTAATGCAACG 58.528 34.615 0.00 0.00 0.00 4.10
2125 11818 4.396166 CCATGTGTCACCTAAGGACATTTC 59.604 45.833 0.00 0.00 46.01 2.17
2170 11863 2.375174 TGGCAGACTAATTCAGTGGGTT 59.625 45.455 0.00 0.00 37.72 4.11
2188 11882 4.976116 GTGCCGTAATCTATGAAAAATGGC 59.024 41.667 0.00 0.00 39.18 4.40
2308 12002 3.869246 ACTGTTTTGTCCTCGTTGTACAG 59.131 43.478 0.00 0.00 38.12 2.74
2357 12051 4.612943 TGAAAACAGTAAAACGGCATTCC 58.387 39.130 0.00 0.00 0.00 3.01
2424 12118 6.208988 AGCAGAATAGTGAGACGTAATCAA 57.791 37.500 4.62 0.00 0.00 2.57
2641 12351 9.905171 TTCAGTTCTTCATGATTATAGATCTCG 57.095 33.333 0.00 0.00 0.00 4.04
2778 12488 0.801251 GCAGAAGCCAAGCTACACAG 59.199 55.000 0.00 0.00 38.25 3.66
2886 12756 6.630131 TCTTCCCCATATTCCTCATACTGTA 58.370 40.000 0.00 0.00 0.00 2.74
3007 12877 2.057922 AGACCCCAGCCCATGTATAAG 58.942 52.381 0.00 0.00 0.00 1.73
3040 12910 9.646427 ACAAAGTGTCTATAAGAACAGAATCTC 57.354 33.333 0.00 0.00 0.00 2.75
3193 13063 2.222027 CGCAACCTGTTTTTCTCCTCT 58.778 47.619 0.00 0.00 0.00 3.69
3213 13083 8.308207 TCAAACTTAATTTAAATGGGCCTACAC 58.692 33.333 4.53 0.00 0.00 2.90
3289 13165 6.900568 TTTGCAAATTAATTGGCCTTATCG 57.099 33.333 22.13 0.00 39.54 2.92
3575 13649 2.099098 GGTTGGCCGAATATTTGACCAG 59.901 50.000 10.32 0.00 0.00 4.00
3588 13662 3.866883 ACAAGATAATTTGGTTGGCCG 57.133 42.857 0.00 0.00 37.67 6.13
3637 13721 3.999046 TGCACACTATCATAGGCATCAG 58.001 45.455 0.00 0.00 0.00 2.90
3758 13861 9.398170 CAACTATATTTTTCAACAGTTCACAGG 57.602 33.333 0.00 0.00 0.00 4.00
3862 13965 7.382110 AGTAGCCACTACATAAATGCATAGAG 58.618 38.462 0.00 0.00 39.22 2.43
3967 14078 1.538204 GGGAACGATATGAAGCGCTCA 60.538 52.381 12.06 11.46 38.29 4.26
4076 14187 8.623903 AGTTTGCAAATCTACATGTATGGTATG 58.376 33.333 16.21 4.08 0.00 2.39
4220 14412 3.321968 AGGGAATGCTTTCTGAAAACCAC 59.678 43.478 11.68 0.00 32.16 4.16
4299 14491 4.406003 GGAGGGAGTAACAGAGAGCATAAA 59.594 45.833 0.00 0.00 0.00 1.40
4313 14505 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4314 14506 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4315 14507 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4316 14508 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4317 14509 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4318 14510 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4319 14511 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4320 14512 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4321 14513 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
4322 14514 4.406069 TCTACGACGAGTAATTTGGAACG 58.594 43.478 0.00 0.00 34.45 3.95
4323 14515 6.882458 ATTCTACGACGAGTAATTTGGAAC 57.118 37.500 0.00 0.00 34.45 3.62
4324 14516 6.311935 CCAATTCTACGACGAGTAATTTGGAA 59.688 38.462 0.00 0.00 34.02 3.53
4325 14517 5.808540 CCAATTCTACGACGAGTAATTTGGA 59.191 40.000 0.00 0.00 34.02 3.53
4326 14518 5.808540 TCCAATTCTACGACGAGTAATTTGG 59.191 40.000 0.00 7.74 34.45 3.28
4327 14519 6.880822 TCCAATTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.78 34.45 2.32
4328 14520 7.039882 ACATCCAATTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
4329 14521 6.570692 ACATCCAATTCTACGACGAGTAATT 58.429 36.000 0.00 1.19 34.45 1.40
4330 14522 6.145338 ACATCCAATTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
4331 14523 5.571784 ACATCCAATTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
4332 14524 6.709397 AGATACATCCAATTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
4333 14525 5.531659 AGATACATCCAATTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
4334 14526 6.003234 AGATACATCCAATTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
4335 14527 6.932960 TCTAGATACATCCAATTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
4336 14528 7.130303 TCTAGATACATCCAATTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
4337 14529 8.569641 AGTTCTAGATACATCCAATTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
4338 14530 8.693120 AGTTCTAGATACATCCAATTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
4366 14558 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
4367 14559 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
4368 14560 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
4369 14561 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
4370 14562 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
4371 14563 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
4372 14564 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
4373 14565 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
4374 14566 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
4375 14567 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
4376 14568 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
4377 14569 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
4378 14570 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
4379 14571 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
4380 14572 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
4381 14573 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
4382 14574 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
4383 14575 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
4384 14576 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
4385 14577 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
4386 14578 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
4387 14579 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
4388 14580 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
4389 14581 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
4390 14582 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
4391 14583 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
4392 14584 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4393 14585 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4394 14586 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4395 14587 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4396 14588 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4397 14589 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4398 14590 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4399 14591 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4400 14592 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
4401 14593 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4402 14594 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
4403 14595 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
4404 14596 0.822164 AATGTACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
4405 14597 3.345508 AAAATGTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
4406 14598 3.119955 GCAAAAATGTACTCCCTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
4407 14599 2.817844 GCAAAAATGTACTCCCTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
4408 14600 2.224670 TGCAAAAATGTACTCCCTCCGT 60.225 45.455 0.00 0.00 0.00 4.69
4409 14601 2.161609 GTGCAAAAATGTACTCCCTCCG 59.838 50.000 0.00 0.00 0.00 4.63
4410 14602 2.492088 GGTGCAAAAATGTACTCCCTCC 59.508 50.000 0.00 0.00 0.00 4.30
4411 14603 3.421844 AGGTGCAAAAATGTACTCCCTC 58.578 45.455 0.00 0.00 0.00 4.30
4412 14604 3.525800 AGGTGCAAAAATGTACTCCCT 57.474 42.857 0.00 0.00 0.00 4.20
4413 14605 4.600692 AAAGGTGCAAAAATGTACTCCC 57.399 40.909 0.00 0.00 0.00 4.30
4414 14606 5.596845 TCAAAAGGTGCAAAAATGTACTCC 58.403 37.500 0.00 0.00 0.00 3.85
4415 14607 6.346838 GCATCAAAAGGTGCAAAAATGTACTC 60.347 38.462 0.00 0.00 40.94 2.59
4416 14608 5.466393 GCATCAAAAGGTGCAAAAATGTACT 59.534 36.000 0.00 0.00 40.94 2.73
4417 14609 5.678921 GCATCAAAAGGTGCAAAAATGTAC 58.321 37.500 0.00 0.00 40.94 2.90
4640 15164 8.929827 TTGTTTTGAATAACATGCCATCTATG 57.070 30.769 0.00 0.00 37.81 2.23
4874 15510 0.738389 CCAAGTGCCGTGAAACAACT 59.262 50.000 0.00 0.00 35.74 3.16
5074 15829 5.176774 TGCTTGTATCACTCAACTAAACACG 59.823 40.000 0.00 0.00 0.00 4.49
5513 16276 6.698380 TCTGTCTTCAATTACCTTCCTACAC 58.302 40.000 0.00 0.00 0.00 2.90
5529 16292 4.376146 ACTGAAAGAGCAGTTCTGTCTTC 58.624 43.478 6.06 0.00 46.42 2.87
5539 16302 5.413833 ACACCATGATAAACTGAAAGAGCAG 59.586 40.000 0.00 0.00 41.63 4.24
5549 16312 7.555914 TGTTGTGCATATACACCATGATAAACT 59.444 33.333 3.59 0.00 39.93 2.66
5589 16352 7.169476 GTCAGGACAAAACAACTCTAGTAAGTC 59.831 40.741 0.00 0.00 0.00 3.01
5595 16358 6.867662 AATGTCAGGACAAAACAACTCTAG 57.132 37.500 6.17 0.00 45.41 2.43
5609 16372 8.321353 TGAAGAGCTTTTATCTAAATGTCAGGA 58.679 33.333 0.00 0.00 0.00 3.86
5705 16468 7.213216 TGCTACATTGATAAAGCTTTTGTCA 57.787 32.000 18.47 18.10 35.95 3.58
5993 16780 4.098807 TCCTTATGAGCATACGTACAAGCA 59.901 41.667 15.93 6.02 0.00 3.91
6000 16788 9.561069 AAATAAATCTTCCTTATGAGCATACGT 57.439 29.630 0.00 0.00 0.00 3.57
6049 16837 3.057596 CGCTGAATTGTTCCTTTTGCCTA 60.058 43.478 0.00 0.00 0.00 3.93
6100 16888 3.494045 GCTTTAGCATGGTCCTTCAAC 57.506 47.619 0.00 0.00 41.59 3.18
6118 16906 7.394359 ACAAAGAAAAGATGGTATACATGTGCT 59.606 33.333 9.11 0.00 40.72 4.40
6213 17001 8.718158 ATAGGAGATACTGTCAATTCTGATGA 57.282 34.615 0.00 0.00 33.05 2.92
6240 17030 2.835156 TGGAATCCGACACCTGAACATA 59.165 45.455 0.00 0.00 0.00 2.29
6488 17303 3.738429 TAGCGGTGCTGCATGCGAT 62.738 57.895 14.09 9.49 46.63 4.58
6536 17351 2.438795 AGACGGGTCGAGGAGCTC 60.439 66.667 4.71 4.71 34.09 4.09
6595 17413 1.522580 GACCGATGCAGGAGCCTTC 60.523 63.158 0.00 0.00 41.13 3.46
6664 17482 1.701704 CTGAAATGGCGGTTTTGAGC 58.298 50.000 0.00 0.00 0.00 4.26
6703 17524 4.382470 CGGCATTTTTGGAACCATGGAATA 60.382 41.667 21.47 0.00 0.00 1.75
6788 17631 6.260050 ACATGAACGAAAAAGTAGAGCAAAGA 59.740 34.615 0.00 0.00 0.00 2.52
6927 17792 8.984891 TCATTGTTGGAATTTATTAGTGCAAG 57.015 30.769 0.00 0.00 32.78 4.01
6947 17812 6.856135 TGAGCAGTATAGAAAGCATCATTG 57.144 37.500 0.00 0.00 0.00 2.82
6948 17813 6.996879 ACATGAGCAGTATAGAAAGCATCATT 59.003 34.615 0.00 0.00 0.00 2.57
6951 17816 6.857777 AACATGAGCAGTATAGAAAGCATC 57.142 37.500 0.00 0.00 0.00 3.91
6952 17817 6.426328 GCTAACATGAGCAGTATAGAAAGCAT 59.574 38.462 0.00 0.00 42.36 3.79
6954 17819 5.107683 CGCTAACATGAGCAGTATAGAAAGC 60.108 44.000 0.00 0.00 42.99 3.51
6963 17842 0.036952 AGTGCGCTAACATGAGCAGT 60.037 50.000 9.73 3.23 42.86 4.40
6964 17843 1.926561 TAGTGCGCTAACATGAGCAG 58.073 50.000 9.73 0.00 42.86 4.24
6973 17852 1.333931 CCGAGAGTCATAGTGCGCTAA 59.666 52.381 11.71 0.00 0.00 3.09
6982 17861 3.698289 AGAAGTGTTCCCGAGAGTCATA 58.302 45.455 0.00 0.00 0.00 2.15
6985 17864 3.083293 ACTAGAAGTGTTCCCGAGAGTC 58.917 50.000 0.00 0.00 0.00 3.36
6987 17866 3.127895 CAGACTAGAAGTGTTCCCGAGAG 59.872 52.174 0.00 0.00 0.00 3.20
6989 17868 2.164624 CCAGACTAGAAGTGTTCCCGAG 59.835 54.545 0.00 0.00 0.00 4.63
6990 17869 2.168496 CCAGACTAGAAGTGTTCCCGA 58.832 52.381 0.00 0.00 0.00 5.14
6992 17871 3.306849 GGTTCCAGACTAGAAGTGTTCCC 60.307 52.174 0.00 0.00 0.00 3.97
6995 17874 4.039366 GTGAGGTTCCAGACTAGAAGTGTT 59.961 45.833 0.00 0.00 0.00 3.32
6996 17875 3.574826 GTGAGGTTCCAGACTAGAAGTGT 59.425 47.826 0.00 0.00 0.00 3.55
6997 17876 3.829601 AGTGAGGTTCCAGACTAGAAGTG 59.170 47.826 0.00 0.00 0.00 3.16
6998 17877 3.829601 CAGTGAGGTTCCAGACTAGAAGT 59.170 47.826 0.00 0.00 0.00 3.01
6999 17878 4.082845 TCAGTGAGGTTCCAGACTAGAAG 58.917 47.826 0.00 0.00 0.00 2.85
7000 17879 4.114015 TCAGTGAGGTTCCAGACTAGAA 57.886 45.455 0.00 0.00 0.00 2.10
7035 17924 9.533253 CACTTGGTTTCTCTTATTTGTGAAAAT 57.467 29.630 0.00 0.00 33.26 1.82
7040 17929 5.221224 TGCCACTTGGTTTCTCTTATTTGTG 60.221 40.000 0.00 0.00 37.57 3.33
7043 17932 5.567423 GCATGCCACTTGGTTTCTCTTATTT 60.567 40.000 6.36 0.00 37.57 1.40
7046 17935 2.819608 GCATGCCACTTGGTTTCTCTTA 59.180 45.455 6.36 0.00 37.57 2.10
7049 17938 0.961019 TGCATGCCACTTGGTTTCTC 59.039 50.000 16.68 0.00 37.57 2.87
7050 17939 0.675633 GTGCATGCCACTTGGTTTCT 59.324 50.000 16.68 0.00 41.35 2.52
7051 17940 0.388659 TGTGCATGCCACTTGGTTTC 59.611 50.000 16.68 0.00 44.92 2.78
7052 17941 0.104671 GTGTGCATGCCACTTGGTTT 59.895 50.000 23.79 0.00 44.92 3.27
7053 17942 1.741525 GTGTGCATGCCACTTGGTT 59.258 52.632 23.79 0.00 44.92 3.67
7054 17943 2.202395 GGTGTGCATGCCACTTGGT 61.202 57.895 27.36 0.00 44.92 3.67
7055 17944 2.652530 GGTGTGCATGCCACTTGG 59.347 61.111 27.36 0.00 44.92 3.61
7056 17945 1.537814 ATGGGTGTGCATGCCACTTG 61.538 55.000 27.36 0.00 44.92 3.16
7066 17955 2.923121 ACATGACTGATATGGGTGTGC 58.077 47.619 0.00 0.00 0.00 4.57
7071 17960 9.730705 AATATTCTGTAACATGACTGATATGGG 57.269 33.333 0.00 0.00 0.00 4.00
7080 17969 9.520204 CCCAAATTGAATATTCTGTAACATGAC 57.480 33.333 16.24 0.00 0.00 3.06
7084 17973 7.178274 ACAGCCCAAATTGAATATTCTGTAACA 59.822 33.333 16.24 0.00 31.40 2.41
7085 17974 7.547227 ACAGCCCAAATTGAATATTCTGTAAC 58.453 34.615 16.24 0.00 31.40 2.50
7086 17975 7.716799 ACAGCCCAAATTGAATATTCTGTAA 57.283 32.000 16.24 3.33 31.40 2.41
7087 17976 8.995027 ATACAGCCCAAATTGAATATTCTGTA 57.005 30.769 16.24 12.33 38.40 2.74
7088 17977 7.902920 ATACAGCCCAAATTGAATATTCTGT 57.097 32.000 16.24 10.73 36.41 3.41
7091 17980 9.196552 GCTTAATACAGCCCAAATTGAATATTC 57.803 33.333 8.60 8.60 33.21 1.75
7092 17981 7.867403 CGCTTAATACAGCCCAAATTGAATATT 59.133 33.333 0.00 0.00 36.31 1.28
7093 17982 7.370383 CGCTTAATACAGCCCAAATTGAATAT 58.630 34.615 0.00 0.00 36.31 1.28
7094 17983 6.238897 CCGCTTAATACAGCCCAAATTGAATA 60.239 38.462 0.00 0.00 36.31 1.75
7095 17984 5.451798 CCGCTTAATACAGCCCAAATTGAAT 60.452 40.000 0.00 0.00 36.31 2.57
7096 17985 4.142271 CCGCTTAATACAGCCCAAATTGAA 60.142 41.667 0.00 0.00 36.31 2.69
7097 17986 3.380004 CCGCTTAATACAGCCCAAATTGA 59.620 43.478 0.00 0.00 36.31 2.57
7098 17987 3.130340 ACCGCTTAATACAGCCCAAATTG 59.870 43.478 0.00 0.00 36.31 2.32
7099 17988 3.361786 ACCGCTTAATACAGCCCAAATT 58.638 40.909 0.00 0.00 36.31 1.82
7100 17989 3.012934 ACCGCTTAATACAGCCCAAAT 57.987 42.857 0.00 0.00 36.31 2.32
7101 17990 2.500392 ACCGCTTAATACAGCCCAAA 57.500 45.000 0.00 0.00 36.31 3.28
7102 17991 2.490115 CAAACCGCTTAATACAGCCCAA 59.510 45.455 0.00 0.00 36.31 4.12
7103 17992 2.088423 CAAACCGCTTAATACAGCCCA 58.912 47.619 0.00 0.00 36.31 5.36
7104 17993 1.202256 GCAAACCGCTTAATACAGCCC 60.202 52.381 0.00 0.00 36.31 5.19
7105 17994 1.470890 TGCAAACCGCTTAATACAGCC 59.529 47.619 0.00 0.00 43.06 4.85
7106 17995 2.911819 TGCAAACCGCTTAATACAGC 57.088 45.000 0.00 0.00 43.06 4.40
7107 17996 4.980590 TGAATGCAAACCGCTTAATACAG 58.019 39.130 0.00 0.00 43.06 2.74
7108 17997 5.157781 GTTGAATGCAAACCGCTTAATACA 58.842 37.500 0.00 0.00 43.06 2.29
7109 17998 5.157781 TGTTGAATGCAAACCGCTTAATAC 58.842 37.500 0.00 0.00 43.06 1.89
7110 17999 5.378292 TGTTGAATGCAAACCGCTTAATA 57.622 34.783 0.00 0.00 43.06 0.98
7111 18000 4.250116 TGTTGAATGCAAACCGCTTAAT 57.750 36.364 0.00 0.00 43.06 1.40
7112 18001 3.717400 TGTTGAATGCAAACCGCTTAA 57.283 38.095 0.00 0.00 43.06 1.85
7113 18002 3.005261 ACATGTTGAATGCAAACCGCTTA 59.995 39.130 0.00 0.00 43.06 3.09
7114 18003 2.224018 ACATGTTGAATGCAAACCGCTT 60.224 40.909 0.00 0.00 43.06 4.68
7115 18004 1.340889 ACATGTTGAATGCAAACCGCT 59.659 42.857 0.00 0.00 43.06 5.52
7116 18005 1.782044 ACATGTTGAATGCAAACCGC 58.218 45.000 0.00 0.00 42.89 5.68
7117 18006 2.404693 CGAACATGTTGAATGCAAACCG 59.595 45.455 17.58 5.20 35.42 4.44
7118 18007 3.380142 ACGAACATGTTGAATGCAAACC 58.620 40.909 17.58 0.00 35.42 3.27
7119 18008 6.362016 TGAATACGAACATGTTGAATGCAAAC 59.638 34.615 17.58 0.00 35.42 2.93
7120 18009 6.442112 TGAATACGAACATGTTGAATGCAAA 58.558 32.000 17.58 0.00 35.42 3.68
7121 18010 6.006759 TGAATACGAACATGTTGAATGCAA 57.993 33.333 17.58 0.00 0.00 4.08
7122 18011 5.619625 TGAATACGAACATGTTGAATGCA 57.380 34.783 17.58 8.26 0.00 3.96
7132 18021 7.047891 TCCAAGCTAAGATTGAATACGAACAT 58.952 34.615 0.00 0.00 0.00 2.71
7140 18029 9.342308 TCGAATTATTCCAAGCTAAGATTGAAT 57.658 29.630 0.00 0.00 0.00 2.57
7151 18040 8.128582 TGACAATACATTCGAATTATTCCAAGC 58.871 33.333 8.21 4.86 0.00 4.01
7164 18053 6.688385 CAGGTTAAAGCATGACAATACATTCG 59.312 38.462 0.00 0.00 0.00 3.34
7169 18058 5.106157 ACTGCAGGTTAAAGCATGACAATAC 60.106 40.000 19.93 0.00 40.42 1.89
7172 18061 3.221771 ACTGCAGGTTAAAGCATGACAA 58.778 40.909 19.93 0.00 40.42 3.18
7180 18069 4.267928 GCGTGTATAGACTGCAGGTTAAAG 59.732 45.833 19.93 2.00 0.00 1.85
7187 18076 2.098280 AGTCAGCGTGTATAGACTGCAG 59.902 50.000 13.48 13.48 39.67 4.41
7225 18114 5.245075 TCCAAAATGTAAGATTGGTCCAACC 59.755 40.000 6.41 0.00 43.27 3.77
7227 18116 6.208599 GTCTCCAAAATGTAAGATTGGTCCAA 59.791 38.462 6.80 6.80 43.27 3.53
7231 18120 8.960591 CATAAGTCTCCAAAATGTAAGATTGGT 58.039 33.333 3.92 0.00 43.27 3.67
7253 18142 4.441792 CACAGTGCTATAGTGCCACATAA 58.558 43.478 10.44 0.00 32.72 1.90
7286 18195 9.284968 GAATGTGCAAATACCCTAGTTACATAT 57.715 33.333 0.00 0.00 0.00 1.78
7287 18196 8.491134 AGAATGTGCAAATACCCTAGTTACATA 58.509 33.333 0.00 0.00 0.00 2.29
7288 18197 7.346471 AGAATGTGCAAATACCCTAGTTACAT 58.654 34.615 0.00 0.00 0.00 2.29
7289 18198 6.717289 AGAATGTGCAAATACCCTAGTTACA 58.283 36.000 0.00 0.00 0.00 2.41
7302 18211 7.090173 GTGCTTTAAGGATAAGAATGTGCAAA 58.910 34.615 0.00 0.00 0.00 3.68
7307 18216 6.942576 AGTGTGTGCTTTAAGGATAAGAATGT 59.057 34.615 0.00 0.00 0.00 2.71
7336 18246 8.924691 CGAATCCATTTTCTGCAAAGATTTTTA 58.075 29.630 0.00 0.00 0.00 1.52
7408 18318 9.612066 ATCAGCTTTTGTTTTCCTGAATAAAAA 57.388 25.926 0.00 0.00 36.29 1.94
7480 18390 2.373169 AGGTTGGATCTCAGTTGCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
7488 18398 2.702478 TGCCAGATAGGTTGGATCTCAG 59.298 50.000 0.00 0.00 40.61 3.35
7505 18415 3.058570 CACTTTATAACTTGCGTGTGCCA 60.059 43.478 0.00 0.00 41.78 4.92
7578 18495 6.934083 GGTTATGGTTGGAATGTCAATTTTGT 59.066 34.615 0.00 0.00 0.00 2.83
7579 18496 6.933521 TGGTTATGGTTGGAATGTCAATTTTG 59.066 34.615 0.00 0.00 0.00 2.44
7611 18528 0.677288 TCGAGATTTGTCCACGGTGT 59.323 50.000 7.45 0.00 0.00 4.16
7626 18543 3.024547 TGGTCTTATCTCAACCCTCGAG 58.975 50.000 5.13 5.13 31.78 4.04
7628 18545 2.159085 GGTGGTCTTATCTCAACCCTCG 60.159 54.545 0.00 0.00 31.78 4.63
7632 18549 5.990668 ACTAATGGTGGTCTTATCTCAACC 58.009 41.667 0.00 0.00 0.00 3.77
7635 18552 7.839705 AGTTCTACTAATGGTGGTCTTATCTCA 59.160 37.037 0.00 0.00 0.00 3.27
7640 18557 6.127814 CGTCAGTTCTACTAATGGTGGTCTTA 60.128 42.308 0.00 0.00 0.00 2.10
7645 18562 4.713824 TCGTCAGTTCTACTAATGGTGG 57.286 45.455 0.00 0.00 0.00 4.61
7673 18590 5.682943 TTTAATTGCAGTAAGCTTCGTGT 57.317 34.783 0.00 0.00 45.94 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.