Multiple sequence alignment - TraesCS1A01G421900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G421900 chr1A 100.000 3321 0 0 1 3321 577822778 577819458 0.000000e+00 6133.0
1 TraesCS1A01G421900 chr1A 85.544 671 74 10 1926 2592 577768018 577767367 0.000000e+00 680.0
2 TraesCS1A01G421900 chr1A 82.188 786 82 28 789 1525 577830216 577829440 1.010000e-174 623.0
3 TraesCS1A01G421900 chr1A 94.186 86 4 1 1658 1742 577769258 577769173 2.690000e-26 130.0
4 TraesCS1A01G421900 chr1A 100.000 31 0 0 6 36 101761476 101761506 1.290000e-04 58.4
5 TraesCS1A01G421900 chr1A 100.000 30 0 0 1 30 111589264 111589293 4.630000e-04 56.5
6 TraesCS1A01G421900 chr1D 91.687 806 37 15 799 1604 481343954 481343179 0.000000e+00 1090.0
7 TraesCS1A01G421900 chr1D 86.621 867 83 17 1754 2596 481342894 481342037 0.000000e+00 928.0
8 TraesCS1A01G421900 chr1D 85.921 831 78 25 1768 2593 481336521 481335725 0.000000e+00 850.0
9 TraesCS1A01G421900 chr1D 86.423 685 75 12 2639 3321 481341840 481341172 0.000000e+00 734.0
10 TraesCS1A01G421900 chr1D 82.125 800 89 23 789 1563 481368759 481367989 1.300000e-178 636.0
11 TraesCS1A01G421900 chr1D 89.506 324 31 1 2628 2951 481335506 481335186 1.110000e-109 407.0
12 TraesCS1A01G421900 chr1D 90.566 159 6 5 1602 1753 481343132 481342976 5.620000e-48 202.0
13 TraesCS1A01G421900 chr1D 95.935 123 5 0 1621 1743 481336744 481336622 2.020000e-47 200.0
14 TraesCS1A01G421900 chr1D 97.436 39 1 0 1628 1666 481367621 481367583 2.140000e-07 67.6
15 TraesCS1A01G421900 chr1D 100.000 29 0 0 1602 1630 481337142 481337114 2.000000e-03 54.7
16 TraesCS1A01G421900 chr1B 83.663 1010 106 27 1602 2593 669730480 669729512 0.000000e+00 896.0
17 TraesCS1A01G421900 chr1B 87.906 678 67 9 2647 3321 669729291 669728626 0.000000e+00 784.0
18 TraesCS1A01G421900 chr1B 85.714 770 60 14 868 1605 669731277 669730526 0.000000e+00 767.0
19 TraesCS1A01G421900 chr1B 87.184 632 68 10 1966 2593 669710610 669709988 0.000000e+00 706.0
20 TraesCS1A01G421900 chr1B 90.775 271 21 4 2683 2951 669709821 669709553 3.150000e-95 359.0
21 TraesCS1A01G421900 chr1B 75.949 790 112 40 988 1743 669713976 669713231 5.310000e-88 335.0
22 TraesCS1A01G421900 chrUn 88.350 412 23 8 1 392 2147742 2148148 3.880000e-129 472.0
23 TraesCS1A01G421900 chrUn 87.744 359 19 8 1 339 466635913 466635560 2.400000e-106 396.0
24 TraesCS1A01G421900 chrUn 90.278 288 23 2 512 799 2148476 2148758 4.050000e-99 372.0
25 TraesCS1A01G421900 chrUn 90.278 288 23 2 512 799 279295943 279296225 4.050000e-99 372.0
26 TraesCS1A01G421900 chrUn 90.278 288 23 2 512 799 279303094 279303376 4.050000e-99 372.0
27 TraesCS1A01G421900 chrUn 90.278 288 23 2 512 799 297358160 297358442 4.050000e-99 372.0
28 TraesCS1A01G421900 chrUn 78.462 195 38 4 605 798 215332390 215332199 1.250000e-24 124.0
29 TraesCS1A01G421900 chrUn 89.873 79 4 1 442 520 2148367 2148441 7.580000e-17 99.0
30 TraesCS1A01G421900 chrUn 89.873 79 4 1 442 520 279295834 279295908 7.580000e-17 99.0
31 TraesCS1A01G421900 chrUn 89.873 79 4 1 442 520 279302985 279303059 7.580000e-17 99.0
32 TraesCS1A01G421900 chrUn 89.873 79 4 1 442 520 297358051 297358125 7.580000e-17 99.0
33 TraesCS1A01G421900 chrUn 97.222 36 1 0 409 444 2148254 2148289 9.950000e-06 62.1
34 TraesCS1A01G421900 chrUn 97.222 36 1 0 409 444 279295721 279295756 9.950000e-06 62.1
35 TraesCS1A01G421900 chrUn 97.222 36 1 0 409 444 279302872 279302907 9.950000e-06 62.1
36 TraesCS1A01G421900 chrUn 97.222 36 1 0 409 444 297357938 297357973 9.950000e-06 62.1
37 TraesCS1A01G421900 chr7A 87.893 413 24 11 1 392 78082809 78083216 2.330000e-126 462.0
38 TraesCS1A01G421900 chr7A 94.595 148 7 1 512 659 78083677 78083823 9.270000e-56 228.0
39 TraesCS1A01G421900 chr7A 97.468 79 2 0 442 520 78083564 78083642 5.780000e-28 135.0
40 TraesCS1A01G421900 chr2B 87.313 268 33 1 532 799 697513364 697513098 4.160000e-79 305.0
41 TraesCS1A01G421900 chr5D 76.305 249 51 7 557 801 527892829 527893073 3.480000e-25 126.0
42 TraesCS1A01G421900 chr5D 100.000 30 0 0 1 30 374708357 374708386 4.630000e-04 56.5
43 TraesCS1A01G421900 chr4A 77.720 193 39 4 607 798 26638175 26638364 7.530000e-22 115.0
44 TraesCS1A01G421900 chr6D 100.000 38 0 0 442 479 462209733 462209770 1.650000e-08 71.3
45 TraesCS1A01G421900 chr6A 100.000 38 0 0 442 479 609044414 609044451 1.650000e-08 71.3
46 TraesCS1A01G421900 chr5A 97.222 36 1 0 766 801 667330246 667330281 9.950000e-06 62.1
47 TraesCS1A01G421900 chr6B 100.000 32 0 0 442 473 704462588 704462619 3.580000e-05 60.2
48 TraesCS1A01G421900 chr3D 100.000 28 0 0 9 36 26443049 26443022 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G421900 chr1A 577819458 577822778 3320 True 6133.000000 6133 100.000000 1 3321 1 chr1A.!!$R1 3320
1 TraesCS1A01G421900 chr1A 577829440 577830216 776 True 623.000000 623 82.188000 789 1525 1 chr1A.!!$R2 736
2 TraesCS1A01G421900 chr1A 577767367 577769258 1891 True 405.000000 680 89.865000 1658 2592 2 chr1A.!!$R3 934
3 TraesCS1A01G421900 chr1D 481341172 481343954 2782 True 738.500000 1090 88.824250 799 3321 4 chr1D.!!$R2 2522
4 TraesCS1A01G421900 chr1D 481335186 481337142 1956 True 377.925000 850 92.840500 1602 2951 4 chr1D.!!$R1 1349
5 TraesCS1A01G421900 chr1D 481367583 481368759 1176 True 351.800000 636 89.780500 789 1666 2 chr1D.!!$R3 877
6 TraesCS1A01G421900 chr1B 669728626 669731277 2651 True 815.666667 896 85.761000 868 3321 3 chr1B.!!$R2 2453
7 TraesCS1A01G421900 chr1B 669709553 669713976 4423 True 466.666667 706 84.636000 988 2951 3 chr1B.!!$R1 1963
8 TraesCS1A01G421900 chrUn 2147742 2148758 1016 False 251.275000 472 91.430750 1 799 4 chrUn.!!$F1 798
9 TraesCS1A01G421900 chr7A 78082809 78083823 1014 False 275.000000 462 93.318667 1 659 3 chr7A.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 487 0.034616 CATGGGAGGGAGCTCGATTC 59.965 60.0 7.83 4.97 0.00 2.52 F
547 548 0.114364 TGGGAAGAAAAGGGGAAGGC 59.886 55.0 0.00 0.00 0.00 4.35 F
719 720 0.248907 CGGACGGATGCTATGTTCGT 60.249 55.0 0.00 0.00 36.74 3.85 F
978 991 0.322008 CTCACCAGCTCCCAAACCTC 60.322 60.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1740 0.032540 TGTGATGATCAGCCGATCCG 59.967 55.0 8.78 0.0 46.5 4.18 R
1791 3022 0.457509 CAGCGCCAACAACAACAACA 60.458 50.0 2.29 0.0 0.0 3.33 R
2105 6624 0.916845 GCCTTCTTCTCCCCCTTCCT 60.917 60.0 0.00 0.0 0.0 3.36 R
2743 7768 0.109342 CAGCTTCTTCACCCCACACT 59.891 55.0 0.00 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.220222 CCTAGCGGACATGAGGCA 58.780 61.111 0.00 0.00 0.00 4.75
106 107 1.470632 CCAACGCAAGGTCAAAAAGCA 60.471 47.619 0.00 0.00 46.39 3.91
117 118 2.013400 TCAAAAAGCAGACACGCAAGA 58.987 42.857 0.00 0.00 43.62 3.02
118 119 2.421775 TCAAAAAGCAGACACGCAAGAA 59.578 40.909 0.00 0.00 43.62 2.52
119 120 2.763249 AAAAGCAGACACGCAAGAAG 57.237 45.000 0.00 0.00 43.62 2.85
120 121 0.308993 AAAGCAGACACGCAAGAAGC 59.691 50.000 0.00 0.00 43.62 3.86
129 130 2.982130 GCAAGAAGCGGAGGAGGA 59.018 61.111 0.00 0.00 0.00 3.71
130 131 1.153469 GCAAGAAGCGGAGGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
131 132 1.893919 GCAAGAAGCGGAGGAGGAGT 61.894 60.000 0.00 0.00 0.00 3.85
132 133 0.174617 CAAGAAGCGGAGGAGGAGTC 59.825 60.000 0.00 0.00 0.00 3.36
133 134 0.973496 AAGAAGCGGAGGAGGAGTCC 60.973 60.000 0.00 0.00 44.33 3.85
144 145 0.955905 GAGGAGTCCTCGACATAGGC 59.044 60.000 23.33 0.00 41.08 3.93
145 146 0.820074 AGGAGTCCTCGACATAGGCG 60.820 60.000 5.62 0.00 36.51 5.52
146 147 1.008309 GAGTCCTCGACATAGGCGC 60.008 63.158 0.00 0.00 36.51 6.53
147 148 1.448922 GAGTCCTCGACATAGGCGCT 61.449 60.000 7.64 0.00 36.51 5.92
148 149 1.299468 GTCCTCGACATAGGCGCTG 60.299 63.158 7.64 0.00 36.51 5.18
149 150 2.659897 CCTCGACATAGGCGCTGC 60.660 66.667 7.64 0.00 0.00 5.25
150 151 2.415010 CTCGACATAGGCGCTGCT 59.585 61.111 7.64 0.00 0.00 4.24
151 152 1.948138 CTCGACATAGGCGCTGCTG 60.948 63.158 7.64 4.64 0.00 4.41
152 153 2.963854 CGACATAGGCGCTGCTGG 60.964 66.667 7.64 0.00 0.00 4.85
153 154 3.275338 GACATAGGCGCTGCTGGC 61.275 66.667 7.64 0.00 37.64 4.85
163 164 4.537433 CTGCTGGCCGGGAGCTAC 62.537 72.222 21.27 0.00 43.05 3.58
166 167 4.208686 CTGGCCGGGAGCTACGAC 62.209 72.222 2.57 0.06 43.05 4.34
167 168 4.753662 TGGCCGGGAGCTACGACT 62.754 66.667 2.18 0.00 43.05 4.18
168 169 4.208686 GGCCGGGAGCTACGACTG 62.209 72.222 2.18 0.00 43.05 3.51
169 170 4.208686 GCCGGGAGCTACGACTGG 62.209 72.222 2.18 6.32 38.99 4.00
170 171 2.439701 CCGGGAGCTACGACTGGA 60.440 66.667 11.47 0.00 32.23 3.86
171 172 2.482333 CCGGGAGCTACGACTGGAG 61.482 68.421 11.47 0.00 32.23 3.86
172 173 2.809010 GGGAGCTACGACTGGAGC 59.191 66.667 0.00 0.00 39.08 4.70
175 176 3.503749 AGCTACGACTGGAGCTCG 58.496 61.111 7.83 0.00 46.08 5.03
176 177 1.377463 AGCTACGACTGGAGCTCGT 60.377 57.895 7.83 5.34 46.08 4.18
177 178 1.062845 GCTACGACTGGAGCTCGTC 59.937 63.158 7.83 9.55 43.23 4.20
178 179 1.722677 CTACGACTGGAGCTCGTCC 59.277 63.158 7.83 0.00 43.23 4.79
185 186 4.991024 GGAGCTCGTCCTCTACCT 57.009 61.111 7.83 0.00 42.99 3.08
186 187 2.710440 GGAGCTCGTCCTCTACCTC 58.290 63.158 7.83 0.00 42.99 3.85
187 188 0.181824 GGAGCTCGTCCTCTACCTCT 59.818 60.000 7.83 0.00 42.99 3.69
188 189 1.589803 GAGCTCGTCCTCTACCTCTC 58.410 60.000 0.00 0.00 0.00 3.20
189 190 0.179067 AGCTCGTCCTCTACCTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
190 191 1.778027 GCTCGTCCTCTACCTCTCGC 61.778 65.000 0.00 0.00 0.00 5.03
191 192 0.462225 CTCGTCCTCTACCTCTCGCA 60.462 60.000 0.00 0.00 0.00 5.10
192 193 0.462225 TCGTCCTCTACCTCTCGCAG 60.462 60.000 0.00 0.00 0.00 5.18
201 202 4.154347 CTCTCGCAGGGCCACCTC 62.154 72.222 6.18 0.00 46.95 3.85
305 306 4.069232 CAAGGAGCCCGACAGCGA 62.069 66.667 0.00 0.00 40.82 4.93
306 307 4.070552 AAGGAGCCCGACAGCGAC 62.071 66.667 0.00 0.00 40.82 5.19
308 309 4.803426 GGAGCCCGACAGCGACTG 62.803 72.222 5.47 5.47 40.82 3.51
309 310 3.749064 GAGCCCGACAGCGACTGA 61.749 66.667 12.77 0.00 40.82 3.41
310 311 3.973267 GAGCCCGACAGCGACTGAC 62.973 68.421 12.77 6.56 40.82 3.51
312 313 4.436998 CCCGACAGCGACTGACCC 62.437 72.222 12.77 2.62 40.82 4.46
313 314 4.436998 CCGACAGCGACTGACCCC 62.437 72.222 12.77 0.69 40.82 4.95
314 315 4.778415 CGACAGCGACTGACCCCG 62.778 72.222 12.77 7.29 40.82 5.73
338 339 2.109799 CCAGCCGGCAGTGGATAG 59.890 66.667 31.54 2.15 35.67 2.08
339 340 2.434843 CCAGCCGGCAGTGGATAGA 61.435 63.158 31.54 0.00 35.67 1.98
340 341 1.227380 CAGCCGGCAGTGGATAGAC 60.227 63.158 31.54 0.00 0.00 2.59
341 342 1.685765 AGCCGGCAGTGGATAGACA 60.686 57.895 31.54 0.00 0.00 3.41
342 343 1.521681 GCCGGCAGTGGATAGACAC 60.522 63.158 24.80 0.00 41.63 3.67
343 344 1.226974 CCGGCAGTGGATAGACACG 60.227 63.158 0.00 0.00 45.80 4.49
344 345 1.878522 CGGCAGTGGATAGACACGC 60.879 63.158 0.00 0.00 45.80 5.34
345 346 1.521681 GGCAGTGGATAGACACGCC 60.522 63.158 13.28 13.28 45.82 5.68
346 347 1.218047 GCAGTGGATAGACACGCCA 59.782 57.895 0.00 0.00 45.80 5.69
347 348 0.391130 GCAGTGGATAGACACGCCAA 60.391 55.000 0.00 0.00 45.80 4.52
348 349 1.359848 CAGTGGATAGACACGCCAAC 58.640 55.000 0.00 0.00 45.80 3.77
349 350 0.108804 AGTGGATAGACACGCCAACG 60.109 55.000 0.00 0.00 45.80 4.10
350 351 1.082117 GTGGATAGACACGCCAACGG 61.082 60.000 0.00 0.00 46.04 4.44
351 352 2.171725 GGATAGACACGCCAACGGC 61.172 63.158 0.00 0.00 46.75 5.68
380 381 4.657824 CGGCGAACACGGTGACCT 62.658 66.667 16.29 0.00 0.00 3.85
381 382 3.041940 GGCGAACACGGTGACCTG 61.042 66.667 16.29 0.00 0.00 4.00
382 383 3.041940 GCGAACACGGTGACCTGG 61.042 66.667 16.29 0.00 0.00 4.45
383 384 2.732016 CGAACACGGTGACCTGGA 59.268 61.111 16.29 0.00 0.00 3.86
384 385 1.663702 CGAACACGGTGACCTGGAC 60.664 63.158 16.29 0.00 0.00 4.02
385 386 1.301479 GAACACGGTGACCTGGACC 60.301 63.158 16.29 0.00 0.00 4.46
386 387 2.035237 GAACACGGTGACCTGGACCA 62.035 60.000 16.29 0.00 32.45 4.02
387 388 2.030562 CACGGTGACCTGGACCAC 59.969 66.667 0.74 8.04 32.45 4.16
388 389 3.612681 ACGGTGACCTGGACCACG 61.613 66.667 0.00 4.35 34.30 4.94
389 390 4.373116 CGGTGACCTGGACCACGG 62.373 72.222 0.00 8.70 34.30 4.94
390 391 4.699522 GGTGACCTGGACCACGGC 62.700 72.222 0.00 0.00 34.30 5.68
396 397 4.135153 CTGGACCACGGCGGAGAG 62.135 72.222 13.24 0.00 38.63 3.20
403 404 4.824515 ACGGCGGAGAGGGAGGAG 62.825 72.222 13.24 0.00 0.00 3.69
404 405 4.507916 CGGCGGAGAGGGAGGAGA 62.508 72.222 0.00 0.00 0.00 3.71
405 406 2.200092 GGCGGAGAGGGAGGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
406 407 1.906333 GGCGGAGAGGGAGGAGATC 60.906 68.421 0.00 0.00 0.00 2.75
407 408 1.152652 GCGGAGAGGGAGGAGATCA 60.153 63.158 0.00 0.00 0.00 2.92
408 409 0.757188 GCGGAGAGGGAGGAGATCAA 60.757 60.000 0.00 0.00 0.00 2.57
409 410 1.327303 CGGAGAGGGAGGAGATCAAG 58.673 60.000 0.00 0.00 0.00 3.02
410 411 1.047801 GGAGAGGGAGGAGATCAAGC 58.952 60.000 0.00 0.00 0.00 4.01
411 412 0.673437 GAGAGGGAGGAGATCAAGCG 59.327 60.000 0.00 0.00 0.00 4.68
412 413 1.068921 GAGGGAGGAGATCAAGCGC 59.931 63.158 0.00 0.00 0.00 5.92
413 414 2.279784 GGGAGGAGATCAAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
414 415 2.279784 GGAGGAGATCAAGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
415 416 2.964389 GAGGAGATCAAGCGCGGC 60.964 66.667 8.83 0.00 0.00 6.53
416 417 4.880537 AGGAGATCAAGCGCGGCG 62.881 66.667 19.62 19.62 0.00 6.46
418 419 4.873129 GAGATCAAGCGCGGCGGA 62.873 66.667 25.03 13.33 0.00 5.54
419 420 4.880537 AGATCAAGCGCGGCGGAG 62.881 66.667 25.03 0.00 0.00 4.63
420 421 4.873129 GATCAAGCGCGGCGGAGA 62.873 66.667 25.03 4.82 0.00 3.71
421 422 4.880537 ATCAAGCGCGGCGGAGAG 62.881 66.667 25.03 0.00 0.00 3.20
429 430 4.507916 CGGCGGAGAGGGAGGAGA 62.508 72.222 0.00 0.00 0.00 3.71
430 431 2.200092 GGCGGAGAGGGAGGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
431 432 1.906333 GGCGGAGAGGGAGGAGATC 60.906 68.421 0.00 0.00 0.00 2.75
460 461 3.063084 GAGCGTGTCGAGGACCCT 61.063 66.667 0.00 0.00 0.00 4.34
461 462 3.343788 GAGCGTGTCGAGGACCCTG 62.344 68.421 0.00 0.00 0.00 4.45
462 463 4.436998 GCGTGTCGAGGACCCTGG 62.437 72.222 0.00 0.00 0.00 4.45
463 464 2.989824 CGTGTCGAGGACCCTGGT 60.990 66.667 0.00 0.00 0.00 4.00
464 465 2.657237 GTGTCGAGGACCCTGGTG 59.343 66.667 0.00 0.00 0.00 4.17
465 466 2.603473 TGTCGAGGACCCTGGTGG 60.603 66.667 0.00 0.00 41.37 4.61
466 467 4.083862 GTCGAGGACCCTGGTGGC 62.084 72.222 0.00 0.00 37.83 5.01
469 470 3.017581 GAGGACCCTGGTGGCCAT 61.018 66.667 9.72 0.00 37.83 4.40
470 471 3.341629 AGGACCCTGGTGGCCATG 61.342 66.667 9.72 2.05 37.83 3.66
471 472 4.447342 GGACCCTGGTGGCCATGG 62.447 72.222 9.72 7.63 43.52 3.66
472 473 4.447342 GACCCTGGTGGCCATGGG 62.447 72.222 28.91 28.91 42.45 4.00
474 475 4.133373 CCCTGGTGGCCATGGGAG 62.133 72.222 27.60 13.87 41.39 4.30
475 476 4.133373 CCTGGTGGCCATGGGAGG 62.133 72.222 9.72 8.37 30.82 4.30
476 477 4.133373 CTGGTGGCCATGGGAGGG 62.133 72.222 9.72 0.00 30.82 4.30
477 478 4.692041 TGGTGGCCATGGGAGGGA 62.692 66.667 9.72 0.00 0.00 4.20
478 479 3.813724 GGTGGCCATGGGAGGGAG 61.814 72.222 9.72 0.00 0.00 4.30
479 480 4.512914 GTGGCCATGGGAGGGAGC 62.513 72.222 9.72 0.00 0.00 4.70
480 481 4.765970 TGGCCATGGGAGGGAGCT 62.766 66.667 15.13 0.00 0.00 4.09
481 482 3.883549 GGCCATGGGAGGGAGCTC 61.884 72.222 15.13 4.71 0.00 4.09
482 483 4.247380 GCCATGGGAGGGAGCTCG 62.247 72.222 15.13 0.00 0.00 5.03
483 484 2.444706 CCATGGGAGGGAGCTCGA 60.445 66.667 7.83 0.00 0.00 4.04
484 485 1.840650 CCATGGGAGGGAGCTCGAT 60.841 63.158 7.83 0.00 0.00 3.59
485 486 1.414061 CCATGGGAGGGAGCTCGATT 61.414 60.000 7.83 0.00 0.00 3.34
486 487 0.034616 CATGGGAGGGAGCTCGATTC 59.965 60.000 7.83 4.97 0.00 2.52
487 488 1.124477 ATGGGAGGGAGCTCGATTCC 61.124 60.000 17.07 17.07 0.00 3.01
492 493 3.143338 GGAGCTCGATTCCCTCCC 58.857 66.667 7.83 0.00 39.36 4.30
493 494 2.512355 GGAGCTCGATTCCCTCCCC 61.512 68.421 7.83 0.00 39.36 4.81
494 495 2.840102 AGCTCGATTCCCTCCCCG 60.840 66.667 0.00 0.00 0.00 5.73
495 496 2.838225 GCTCGATTCCCTCCCCGA 60.838 66.667 0.00 0.00 0.00 5.14
496 497 3.449349 CTCGATTCCCTCCCCGAG 58.551 66.667 0.00 0.00 41.71 4.63
497 498 2.838225 TCGATTCCCTCCCCGAGC 60.838 66.667 0.00 0.00 0.00 5.03
498 499 2.840102 CGATTCCCTCCCCGAGCT 60.840 66.667 0.00 0.00 0.00 4.09
499 500 2.862223 CGATTCCCTCCCCGAGCTC 61.862 68.421 2.73 2.73 0.00 4.09
500 501 1.458588 GATTCCCTCCCCGAGCTCT 60.459 63.158 12.85 0.00 0.00 4.09
501 502 1.753368 GATTCCCTCCCCGAGCTCTG 61.753 65.000 12.85 4.96 0.00 3.35
502 503 3.984186 TTCCCTCCCCGAGCTCTGG 62.984 68.421 16.82 16.82 0.00 3.86
503 504 4.787280 CCCTCCCCGAGCTCTGGT 62.787 72.222 21.26 0.00 0.00 4.00
504 505 3.151022 CCTCCCCGAGCTCTGGTC 61.151 72.222 21.26 0.00 0.00 4.02
505 506 3.151022 CTCCCCGAGCTCTGGTCC 61.151 72.222 21.26 0.00 0.00 4.46
506 507 3.965026 CTCCCCGAGCTCTGGTCCA 62.965 68.421 21.26 5.65 0.00 4.02
507 508 3.465403 CCCCGAGCTCTGGTCCAG 61.465 72.222 21.26 13.21 0.00 3.86
508 509 3.465403 CCCGAGCTCTGGTCCAGG 61.465 72.222 19.11 10.61 31.51 4.45
509 510 2.363018 CCGAGCTCTGGTCCAGGA 60.363 66.667 19.11 5.07 31.51 3.86
510 511 1.984570 CCGAGCTCTGGTCCAGGAA 60.985 63.158 19.11 0.00 31.51 3.36
511 512 1.333636 CCGAGCTCTGGTCCAGGAAT 61.334 60.000 19.11 4.76 31.51 3.01
512 513 0.179089 CGAGCTCTGGTCCAGGAATG 60.179 60.000 19.11 8.13 31.51 2.67
513 514 0.463474 GAGCTCTGGTCCAGGAATGC 60.463 60.000 19.11 16.47 31.51 3.56
514 515 1.452833 GCTCTGGTCCAGGAATGCC 60.453 63.158 19.11 0.00 31.51 4.40
515 516 1.153289 CTCTGGTCCAGGAATGCCG 60.153 63.158 19.11 0.00 39.96 5.69
516 517 2.825836 CTGGTCCAGGAATGCCGC 60.826 66.667 11.46 0.00 39.96 6.53
517 518 4.776322 TGGTCCAGGAATGCCGCG 62.776 66.667 0.00 0.00 39.96 6.46
525 526 3.272334 GAATGCCGCGCCTCGATT 61.272 61.111 0.00 0.00 41.67 3.34
526 527 2.823829 GAATGCCGCGCCTCGATTT 61.824 57.895 0.00 0.00 41.67 2.17
527 528 2.971744 GAATGCCGCGCCTCGATTTG 62.972 60.000 0.00 0.00 41.67 2.32
529 530 4.520846 GCCGCGCCTCGATTTGTG 62.521 66.667 0.00 0.00 41.67 3.33
530 531 3.864686 CCGCGCCTCGATTTGTGG 61.865 66.667 0.00 0.00 41.67 4.17
531 532 3.864686 CGCGCCTCGATTTGTGGG 61.865 66.667 0.00 0.00 41.67 4.61
532 533 2.435938 GCGCCTCGATTTGTGGGA 60.436 61.111 0.00 0.00 0.00 4.37
533 534 2.038269 GCGCCTCGATTTGTGGGAA 61.038 57.895 0.00 0.00 0.00 3.97
534 535 1.982073 GCGCCTCGATTTGTGGGAAG 61.982 60.000 0.00 0.00 0.00 3.46
535 536 0.391130 CGCCTCGATTTGTGGGAAGA 60.391 55.000 0.00 0.00 0.00 2.87
536 537 1.821216 GCCTCGATTTGTGGGAAGAA 58.179 50.000 0.00 0.00 0.00 2.52
537 538 2.159382 GCCTCGATTTGTGGGAAGAAA 58.841 47.619 0.00 0.00 0.00 2.52
538 539 2.556622 GCCTCGATTTGTGGGAAGAAAA 59.443 45.455 0.00 0.00 0.00 2.29
539 540 3.366374 GCCTCGATTTGTGGGAAGAAAAG 60.366 47.826 0.00 0.00 0.00 2.27
540 541 3.191371 CCTCGATTTGTGGGAAGAAAAGG 59.809 47.826 0.00 0.00 0.00 3.11
541 542 3.153919 TCGATTTGTGGGAAGAAAAGGG 58.846 45.455 0.00 0.00 0.00 3.95
542 543 2.231235 CGATTTGTGGGAAGAAAAGGGG 59.769 50.000 0.00 0.00 0.00 4.79
543 544 3.506398 GATTTGTGGGAAGAAAAGGGGA 58.494 45.455 0.00 0.00 0.00 4.81
544 545 3.406512 TTTGTGGGAAGAAAAGGGGAA 57.593 42.857 0.00 0.00 0.00 3.97
545 546 2.675658 TGTGGGAAGAAAAGGGGAAG 57.324 50.000 0.00 0.00 0.00 3.46
546 547 1.146982 TGTGGGAAGAAAAGGGGAAGG 59.853 52.381 0.00 0.00 0.00 3.46
547 548 0.114364 TGGGAAGAAAAGGGGAAGGC 59.886 55.000 0.00 0.00 0.00 4.35
548 549 0.965866 GGGAAGAAAAGGGGAAGGCG 60.966 60.000 0.00 0.00 0.00 5.52
549 550 1.595993 GGAAGAAAAGGGGAAGGCGC 61.596 60.000 0.00 0.00 0.00 6.53
550 551 1.923227 GAAGAAAAGGGGAAGGCGCG 61.923 60.000 0.00 0.00 0.00 6.86
551 552 3.440415 GAAAAGGGGAAGGCGCGG 61.440 66.667 8.83 0.00 0.00 6.46
566 567 3.814268 CGGGCCGCTGATTTGTGG 61.814 66.667 15.42 0.00 40.36 4.17
567 568 3.451894 GGGCCGCTGATTTGTGGG 61.452 66.667 0.00 0.00 38.01 4.61
568 569 3.451894 GGCCGCTGATTTGTGGGG 61.452 66.667 0.00 0.00 38.01 4.96
570 571 3.451894 CCGCTGATTTGTGGGGCC 61.452 66.667 0.00 0.00 34.20 5.80
571 572 2.676121 CGCTGATTTGTGGGGCCA 60.676 61.111 4.39 0.00 0.00 5.36
572 573 2.053865 CGCTGATTTGTGGGGCCAT 61.054 57.895 4.39 0.00 0.00 4.40
573 574 1.518774 GCTGATTTGTGGGGCCATG 59.481 57.895 4.39 0.00 0.00 3.66
574 575 1.963464 GCTGATTTGTGGGGCCATGG 61.963 60.000 7.63 7.63 0.00 3.66
575 576 0.615544 CTGATTTGTGGGGCCATGGT 60.616 55.000 14.67 0.00 0.00 3.55
576 577 0.903924 TGATTTGTGGGGCCATGGTG 60.904 55.000 14.67 0.00 0.00 4.17
577 578 1.613035 ATTTGTGGGGCCATGGTGG 60.613 57.895 14.67 0.00 41.55 4.61
578 579 2.104359 ATTTGTGGGGCCATGGTGGA 62.104 55.000 14.67 0.00 40.96 4.02
585 586 2.662596 GCCATGGTGGACACGAGA 59.337 61.111 14.67 0.00 40.96 4.04
586 587 1.448540 GCCATGGTGGACACGAGAG 60.449 63.158 14.67 0.00 40.96 3.20
587 588 1.219124 CCATGGTGGACACGAGAGG 59.781 63.158 2.57 0.00 40.96 3.69
588 589 1.448540 CATGGTGGACACGAGAGGC 60.449 63.158 0.00 0.00 0.00 4.70
589 590 2.660064 ATGGTGGACACGAGAGGCC 61.660 63.158 0.00 0.00 0.00 5.19
590 591 3.311110 GGTGGACACGAGAGGCCA 61.311 66.667 5.01 0.00 0.00 5.36
591 592 2.048127 GTGGACACGAGAGGCCAC 60.048 66.667 14.54 14.54 41.92 5.01
592 593 3.311110 TGGACACGAGAGGCCACC 61.311 66.667 5.01 0.00 0.00 4.61
593 594 3.311110 GGACACGAGAGGCCACCA 61.311 66.667 5.01 0.00 0.00 4.17
594 595 2.262915 GACACGAGAGGCCACCAG 59.737 66.667 5.01 0.00 0.00 4.00
595 596 3.302347 GACACGAGAGGCCACCAGG 62.302 68.421 5.01 0.00 38.23 4.45
605 606 4.181010 CCACCAGGCGGATGGGAG 62.181 72.222 6.24 0.00 45.25 4.30
606 607 4.864334 CACCAGGCGGATGGGAGC 62.864 72.222 6.24 0.00 45.25 4.70
613 614 4.570663 CGGATGGGAGCGGACGAC 62.571 72.222 0.00 0.00 0.00 4.34
635 636 3.712881 GCGCTCGCTTTTGTCCGT 61.713 61.111 0.00 0.00 38.26 4.69
636 637 2.470286 CGCTCGCTTTTGTCCGTC 59.530 61.111 0.00 0.00 0.00 4.79
637 638 2.470286 GCTCGCTTTTGTCCGTCG 59.530 61.111 0.00 0.00 0.00 5.12
638 639 2.470286 CTCGCTTTTGTCCGTCGC 59.530 61.111 0.00 0.00 0.00 5.19
639 640 3.335259 CTCGCTTTTGTCCGTCGCG 62.335 63.158 0.00 0.00 44.63 5.87
650 651 2.740826 CGTCGCGGACCCATTTGT 60.741 61.111 6.13 0.00 0.00 2.83
651 652 2.322081 CGTCGCGGACCCATTTGTT 61.322 57.895 6.13 0.00 0.00 2.83
652 653 1.500396 GTCGCGGACCCATTTGTTC 59.500 57.895 6.13 0.00 0.00 3.18
653 654 1.673009 TCGCGGACCCATTTGTTCC 60.673 57.895 6.13 0.00 0.00 3.62
654 655 2.696759 CGCGGACCCATTTGTTCCC 61.697 63.158 0.00 0.00 0.00 3.97
655 656 1.605165 GCGGACCCATTTGTTCCCA 60.605 57.895 0.00 0.00 0.00 4.37
656 657 0.970427 GCGGACCCATTTGTTCCCAT 60.970 55.000 0.00 0.00 0.00 4.00
657 658 1.683629 GCGGACCCATTTGTTCCCATA 60.684 52.381 0.00 0.00 0.00 2.74
658 659 2.944129 CGGACCCATTTGTTCCCATAT 58.056 47.619 0.00 0.00 0.00 1.78
659 660 3.295973 CGGACCCATTTGTTCCCATATT 58.704 45.455 0.00 0.00 0.00 1.28
660 661 3.704061 CGGACCCATTTGTTCCCATATTT 59.296 43.478 0.00 0.00 0.00 1.40
661 662 4.441356 CGGACCCATTTGTTCCCATATTTG 60.441 45.833 0.00 0.00 0.00 2.32
662 663 4.441792 GACCCATTTGTTCCCATATTTGC 58.558 43.478 0.00 0.00 0.00 3.68
663 664 3.118811 ACCCATTTGTTCCCATATTTGCG 60.119 43.478 0.00 0.00 0.00 4.85
664 665 3.118811 CCCATTTGTTCCCATATTTGCGT 60.119 43.478 0.00 0.00 0.00 5.24
665 666 4.502962 CCATTTGTTCCCATATTTGCGTT 58.497 39.130 0.00 0.00 0.00 4.84
666 667 4.934602 CCATTTGTTCCCATATTTGCGTTT 59.065 37.500 0.00 0.00 0.00 3.60
667 668 6.102663 CCATTTGTTCCCATATTTGCGTTTA 58.897 36.000 0.00 0.00 0.00 2.01
668 669 6.591834 CCATTTGTTCCCATATTTGCGTTTAA 59.408 34.615 0.00 0.00 0.00 1.52
669 670 7.279758 CCATTTGTTCCCATATTTGCGTTTAAT 59.720 33.333 0.00 0.00 0.00 1.40
670 671 8.663911 CATTTGTTCCCATATTTGCGTTTAATT 58.336 29.630 0.00 0.00 0.00 1.40
671 672 8.608844 TTTGTTCCCATATTTGCGTTTAATTT 57.391 26.923 0.00 0.00 0.00 1.82
672 673 7.588143 TGTTCCCATATTTGCGTTTAATTTG 57.412 32.000 0.00 0.00 0.00 2.32
673 674 6.591834 TGTTCCCATATTTGCGTTTAATTTGG 59.408 34.615 0.00 0.00 35.28 3.28
674 675 5.665459 TCCCATATTTGCGTTTAATTTGGG 58.335 37.500 19.09 19.09 46.84 4.12
675 676 5.187967 TCCCATATTTGCGTTTAATTTGGGT 59.812 36.000 21.69 0.00 46.18 4.51
676 677 5.522097 CCCATATTTGCGTTTAATTTGGGTC 59.478 40.000 17.93 0.00 43.54 4.46
677 678 5.522097 CCATATTTGCGTTTAATTTGGGTCC 59.478 40.000 0.00 0.00 33.24 4.46
678 679 2.708386 TTGCGTTTAATTTGGGTCCG 57.292 45.000 0.00 0.00 0.00 4.79
679 680 0.882474 TGCGTTTAATTTGGGTCCGG 59.118 50.000 0.00 0.00 0.00 5.14
680 681 1.166989 GCGTTTAATTTGGGTCCGGA 58.833 50.000 0.00 0.00 0.00 5.14
681 682 1.540707 GCGTTTAATTTGGGTCCGGAA 59.459 47.619 5.23 0.00 0.00 4.30
682 683 2.669113 GCGTTTAATTTGGGTCCGGAAC 60.669 50.000 12.37 12.37 0.00 3.62
696 697 3.446507 GGAACGGACAATAAGCGGA 57.553 52.632 0.00 0.00 0.00 5.54
697 698 1.004595 GGAACGGACAATAAGCGGAC 58.995 55.000 0.00 0.00 0.00 4.79
698 699 1.673626 GGAACGGACAATAAGCGGACA 60.674 52.381 0.00 0.00 0.00 4.02
699 700 1.659098 GAACGGACAATAAGCGGACAG 59.341 52.381 0.00 0.00 0.00 3.51
711 712 4.148825 GGACAGCGGACGGATGCT 62.149 66.667 0.00 0.00 43.58 3.79
712 713 2.782222 GGACAGCGGACGGATGCTA 61.782 63.158 0.00 0.00 40.03 3.49
713 714 1.364171 GACAGCGGACGGATGCTAT 59.636 57.895 0.00 0.00 40.03 2.97
714 715 0.941463 GACAGCGGACGGATGCTATG 60.941 60.000 0.00 0.00 40.03 2.23
715 716 1.068083 CAGCGGACGGATGCTATGT 59.932 57.895 0.00 0.00 40.03 2.29
716 717 0.530650 CAGCGGACGGATGCTATGTT 60.531 55.000 0.00 0.00 40.03 2.71
717 718 0.249489 AGCGGACGGATGCTATGTTC 60.249 55.000 0.00 0.00 40.28 3.18
718 719 1.548973 GCGGACGGATGCTATGTTCG 61.549 60.000 0.00 0.00 37.66 3.95
719 720 0.248907 CGGACGGATGCTATGTTCGT 60.249 55.000 0.00 0.00 36.74 3.85
720 721 1.801395 CGGACGGATGCTATGTTCGTT 60.801 52.381 0.00 0.00 34.06 3.85
721 722 2.277084 GGACGGATGCTATGTTCGTTT 58.723 47.619 0.00 0.00 34.06 3.60
722 723 2.030457 GGACGGATGCTATGTTCGTTTG 59.970 50.000 0.00 0.00 34.06 2.93
723 724 2.006888 ACGGATGCTATGTTCGTTTGG 58.993 47.619 0.00 0.00 0.00 3.28
724 725 1.330521 CGGATGCTATGTTCGTTTGGG 59.669 52.381 0.00 0.00 0.00 4.12
725 726 2.365582 GGATGCTATGTTCGTTTGGGT 58.634 47.619 0.00 0.00 0.00 4.51
726 727 2.752903 GGATGCTATGTTCGTTTGGGTT 59.247 45.455 0.00 0.00 0.00 4.11
727 728 3.427503 GGATGCTATGTTCGTTTGGGTTG 60.428 47.826 0.00 0.00 0.00 3.77
728 729 2.577700 TGCTATGTTCGTTTGGGTTGT 58.422 42.857 0.00 0.00 0.00 3.32
729 730 2.550606 TGCTATGTTCGTTTGGGTTGTC 59.449 45.455 0.00 0.00 0.00 3.18
730 731 2.095415 GCTATGTTCGTTTGGGTTGTCC 60.095 50.000 0.00 0.00 0.00 4.02
739 740 2.281970 GGGTTGTCCCGTTGGGTC 60.282 66.667 1.04 0.00 44.74 4.46
740 741 2.511900 GGTTGTCCCGTTGGGTCA 59.488 61.111 1.04 0.00 44.74 4.02
741 742 1.074248 GGTTGTCCCGTTGGGTCAT 59.926 57.895 2.67 0.00 44.74 3.06
742 743 0.325602 GGTTGTCCCGTTGGGTCATA 59.674 55.000 2.67 0.00 44.74 2.15
743 744 1.064979 GGTTGTCCCGTTGGGTCATAT 60.065 52.381 2.67 0.00 44.74 1.78
744 745 2.619590 GGTTGTCCCGTTGGGTCATATT 60.620 50.000 2.67 0.00 44.74 1.28
745 746 3.086282 GTTGTCCCGTTGGGTCATATTT 58.914 45.455 2.67 0.00 44.74 1.40
746 747 3.443145 TGTCCCGTTGGGTCATATTTT 57.557 42.857 1.04 0.00 44.74 1.82
747 748 3.349022 TGTCCCGTTGGGTCATATTTTC 58.651 45.455 1.04 0.00 44.74 2.29
748 749 3.009695 TGTCCCGTTGGGTCATATTTTCT 59.990 43.478 1.04 0.00 44.74 2.52
749 750 3.377172 GTCCCGTTGGGTCATATTTTCTG 59.623 47.826 1.04 0.00 44.74 3.02
750 751 3.009695 TCCCGTTGGGTCATATTTTCTGT 59.990 43.478 1.04 0.00 44.74 3.41
751 752 3.377172 CCCGTTGGGTCATATTTTCTGTC 59.623 47.826 0.00 0.00 38.25 3.51
752 753 3.377172 CCGTTGGGTCATATTTTCTGTCC 59.623 47.826 0.00 0.00 0.00 4.02
753 754 3.063452 CGTTGGGTCATATTTTCTGTCCG 59.937 47.826 0.00 0.00 0.00 4.79
754 755 3.275617 TGGGTCATATTTTCTGTCCGG 57.724 47.619 0.00 0.00 0.00 5.14
755 756 2.841266 TGGGTCATATTTTCTGTCCGGA 59.159 45.455 0.00 0.00 0.00 5.14
756 757 3.203716 GGGTCATATTTTCTGTCCGGAC 58.796 50.000 28.17 28.17 0.00 4.79
757 758 3.203716 GGTCATATTTTCTGTCCGGACC 58.796 50.000 31.19 14.15 37.07 4.46
758 759 3.370103 GGTCATATTTTCTGTCCGGACCA 60.370 47.826 31.19 17.90 42.34 4.02
759 760 4.451900 GTCATATTTTCTGTCCGGACCAT 58.548 43.478 31.19 16.71 0.00 3.55
760 761 4.511826 GTCATATTTTCTGTCCGGACCATC 59.488 45.833 31.19 7.56 0.00 3.51
761 762 4.408921 TCATATTTTCTGTCCGGACCATCT 59.591 41.667 31.19 13.45 0.00 2.90
762 763 5.600898 TCATATTTTCTGTCCGGACCATCTA 59.399 40.000 31.19 14.47 0.00 1.98
763 764 4.837093 ATTTTCTGTCCGGACCATCTAA 57.163 40.909 31.19 18.18 0.00 2.10
764 765 4.627284 TTTTCTGTCCGGACCATCTAAA 57.373 40.909 31.19 19.28 0.00 1.85
765 766 4.837093 TTTCTGTCCGGACCATCTAAAT 57.163 40.909 31.19 0.00 0.00 1.40
766 767 3.819564 TCTGTCCGGACCATCTAAATG 57.180 47.619 31.19 10.03 0.00 2.32
781 782 6.381801 CATCTAAATGGATAAAATGGGTCGC 58.618 40.000 0.00 0.00 0.00 5.19
782 783 5.690865 TCTAAATGGATAAAATGGGTCGCT 58.309 37.500 0.00 0.00 0.00 4.93
783 784 4.918810 AAATGGATAAAATGGGTCGCTC 57.081 40.909 0.00 0.00 0.00 5.03
784 785 2.341846 TGGATAAAATGGGTCGCTCC 57.658 50.000 0.00 0.00 0.00 4.70
785 786 1.562008 TGGATAAAATGGGTCGCTCCA 59.438 47.619 0.00 0.00 41.60 3.86
791 792 3.483954 ATGGGTCGCTCCATTGAAG 57.516 52.632 3.91 0.00 44.55 3.02
792 793 0.620556 ATGGGTCGCTCCATTGAAGT 59.379 50.000 3.91 0.00 44.55 3.01
793 794 0.400213 TGGGTCGCTCCATTGAAGTT 59.600 50.000 0.00 0.00 38.11 2.66
794 795 0.804989 GGGTCGCTCCATTGAAGTTG 59.195 55.000 0.00 0.00 38.11 3.16
797 798 1.129437 GTCGCTCCATTGAAGTTGCTC 59.871 52.381 0.00 0.00 0.00 4.26
809 810 4.491676 TGAAGTTGCTCTAATACCACGAC 58.508 43.478 0.00 0.00 0.00 4.34
810 811 3.146618 AGTTGCTCTAATACCACGACG 57.853 47.619 0.00 0.00 0.00 5.12
814 815 0.933509 CTCTAATACCACGACGGCGC 60.934 60.000 12.58 0.00 42.48 6.53
948 956 3.508840 CGGCTCCCATTCAACGCC 61.509 66.667 0.00 0.00 37.40 5.68
956 964 2.125673 ATTCAACGCCCGACCTCG 60.126 61.111 0.00 0.00 39.44 4.63
978 991 0.322008 CTCACCAGCTCCCAAACCTC 60.322 60.000 0.00 0.00 0.00 3.85
979 992 1.059584 TCACCAGCTCCCAAACCTCA 61.060 55.000 0.00 0.00 0.00 3.86
980 993 0.890996 CACCAGCTCCCAAACCTCAC 60.891 60.000 0.00 0.00 0.00 3.51
981 994 1.303643 CCAGCTCCCAAACCTCACC 60.304 63.158 0.00 0.00 0.00 4.02
982 995 1.763770 CAGCTCCCAAACCTCACCT 59.236 57.895 0.00 0.00 0.00 4.00
983 996 0.322008 CAGCTCCCAAACCTCACCTC 60.322 60.000 0.00 0.00 0.00 3.85
984 997 1.376037 GCTCCCAAACCTCACCTCG 60.376 63.158 0.00 0.00 0.00 4.63
1008 1021 2.268920 CACCACTCCATGTCCGGG 59.731 66.667 0.00 0.00 0.00 5.73
1356 1740 1.454295 GGAGGAGGGAGACGAGGAC 60.454 68.421 0.00 0.00 0.00 3.85
1440 1849 7.517417 CGTTTGCTAATTGAATCTAGCTCGAAT 60.517 37.037 15.28 0.00 40.99 3.34
1444 1853 7.495606 TGCTAATTGAATCTAGCTCGAATTTGA 59.504 33.333 15.28 0.00 40.99 2.69
1482 1895 2.103094 CCACCGACCATCTATCACATGT 59.897 50.000 0.00 0.00 0.00 3.21
1485 1898 3.197766 ACCGACCATCTATCACATGTGTT 59.802 43.478 24.63 18.96 0.00 3.32
1492 1905 6.183360 ACCATCTATCACATGTGTTCGTATGA 60.183 38.462 24.63 14.03 0.00 2.15
1493 1906 6.144563 CCATCTATCACATGTGTTCGTATGAC 59.855 42.308 24.63 0.00 0.00 3.06
1498 1911 5.053811 TCACATGTGTTCGTATGACTTGTT 58.946 37.500 24.63 0.00 0.00 2.83
1509 1922 5.050490 CGTATGACTTGTTGATTAGAGGGG 58.950 45.833 0.00 0.00 0.00 4.79
1514 1927 5.488919 TGACTTGTTGATTAGAGGGGAGAAT 59.511 40.000 0.00 0.00 0.00 2.40
1750 2864 7.947890 ACCCCTTGAGTTCATCTTGTTATTTTA 59.052 33.333 0.00 0.00 0.00 1.52
1751 2865 8.244113 CCCCTTGAGTTCATCTTGTTATTTTAC 58.756 37.037 0.00 0.00 0.00 2.01
1766 2997 4.616181 ATTTTACTGATTGTAGCGGTGC 57.384 40.909 0.00 0.00 32.08 5.01
1788 3019 2.229062 TGCTTTGTACCGAGAGACAGAG 59.771 50.000 0.00 0.00 32.40 3.35
1789 3020 2.416162 GCTTTGTACCGAGAGACAGAGG 60.416 54.545 0.00 0.00 30.47 3.69
1790 3021 2.873094 TTGTACCGAGAGACAGAGGA 57.127 50.000 0.00 0.00 0.00 3.71
1791 3022 3.367646 TTGTACCGAGAGACAGAGGAT 57.632 47.619 0.00 0.00 0.00 3.24
1820 3976 2.334946 TTGGCGCTGTGGCTTCATC 61.335 57.895 15.95 0.00 45.14 2.92
1823 3979 1.742880 GCGCTGTGGCTTCATCTGA 60.743 57.895 0.00 0.00 36.09 3.27
1841 3997 5.116084 TCTGAATGAAATGGAAGTAGGGG 57.884 43.478 0.00 0.00 0.00 4.79
1885 4099 9.810545 AATCAAAAGAAATAAAACAAGAACCGA 57.189 25.926 0.00 0.00 0.00 4.69
1889 4103 4.818005 AGAAATAAAACAAGAACCGACCGT 59.182 37.500 0.00 0.00 0.00 4.83
1916 4130 2.306341 AGATCAACTGGCAGTGATCG 57.694 50.000 31.29 19.74 37.59 3.69
1919 4133 1.795768 TCAACTGGCAGTGATCGAAC 58.204 50.000 22.83 0.00 0.00 3.95
1924 4138 2.456119 GGCAGTGATCGAACGGCAG 61.456 63.158 13.17 0.00 42.23 4.85
1943 4159 5.057819 GGCAGATAACTAGCTAGTTTTCCC 58.942 45.833 36.91 28.94 43.57 3.97
1998 6517 2.279935 AATTGAACTGGCGGTTACCA 57.720 45.000 12.53 3.95 38.41 3.25
2026 6545 7.061789 GGCGAAATTATCAAGTCAAAAACGAAT 59.938 33.333 0.00 0.00 0.00 3.34
2095 6614 1.226547 GAGCGACGAGAAGGAGCAG 60.227 63.158 0.00 0.00 0.00 4.24
2105 6624 3.192422 CGAGAAGGAGCAGAAGAAGAAGA 59.808 47.826 0.00 0.00 0.00 2.87
2227 6997 0.759346 AGGCCGTCAAGAACAGTTCT 59.241 50.000 10.27 10.27 43.15 3.01
2348 7119 5.618640 GCTTGCAACTTCAGTTTAGAGATGG 60.619 44.000 0.00 0.00 35.83 3.51
2354 7125 4.470304 ACTTCAGTTTAGAGATGGTACCCC 59.530 45.833 10.07 0.88 0.00 4.95
2357 7128 4.847512 TCAGTTTAGAGATGGTACCCCAAA 59.152 41.667 10.07 0.00 46.04 3.28
2358 7129 5.491078 TCAGTTTAGAGATGGTACCCCAAAT 59.509 40.000 10.07 0.00 46.04 2.32
2359 7130 5.590259 CAGTTTAGAGATGGTACCCCAAATG 59.410 44.000 10.07 0.00 46.04 2.32
2361 7132 5.789574 TTAGAGATGGTACCCCAAATGTT 57.210 39.130 10.07 0.00 46.04 2.71
2362 7133 4.236527 AGAGATGGTACCCCAAATGTTC 57.763 45.455 10.07 0.00 46.04 3.18
2373 7144 3.758554 CCCCAAATGTTCTGAGTCGAATT 59.241 43.478 0.00 0.00 0.00 2.17
2393 7164 3.452755 TGCAGGACTGTAATATGACCG 57.547 47.619 0.82 0.00 0.00 4.79
2395 7167 2.483013 GCAGGACTGTAATATGACCGCA 60.483 50.000 0.82 0.00 0.00 5.69
2404 7177 3.764885 AATATGACCGCAACTTGCTTC 57.235 42.857 11.93 8.40 42.25 3.86
2431 7204 7.360101 CGTTAGTGAAATCGGAGAGAAACAAAT 60.360 37.037 0.00 0.00 43.63 2.32
2432 7205 8.932791 GTTAGTGAAATCGGAGAGAAACAAATA 58.067 33.333 0.00 0.00 43.63 1.40
2433 7206 7.979444 AGTGAAATCGGAGAGAAACAAATAA 57.021 32.000 0.00 0.00 43.63 1.40
2440 7213 8.705048 ATCGGAGAGAAACAAATAACTTCTAC 57.295 34.615 0.00 0.00 43.63 2.59
2468 7242 6.432802 AAATAACATTTCACTTTCGTTGCG 57.567 33.333 0.00 0.00 0.00 4.85
2481 7260 4.520743 TTCGTTGCGATGATCATCTTTC 57.479 40.909 28.48 18.86 35.23 2.62
2527 7306 9.107367 CTCTTGCTTGAAATTAAAGTTTCTACG 57.893 33.333 0.00 0.00 38.58 3.51
2588 7370 8.232513 CACGATATGCATATTTAGACAGCAATT 58.767 33.333 20.00 0.00 38.85 2.32
2589 7371 9.435688 ACGATATGCATATTTAGACAGCAATTA 57.564 29.630 20.00 0.00 38.85 1.40
2604 7386 9.618890 AGACAGCAATTAATAAATCTTGCTAGA 57.381 29.630 10.77 0.00 37.16 2.43
2615 7397 9.857656 AATAAATCTTGCTAGAATCCTCATGAA 57.142 29.630 0.99 0.00 33.20 2.57
2616 7398 9.857656 ATAAATCTTGCTAGAATCCTCATGAAA 57.142 29.630 0.99 0.00 33.20 2.69
2709 7734 5.532032 TGCATTGAAGTGAGATTCTGAAACA 59.468 36.000 0.00 0.00 0.00 2.83
2729 7754 1.374343 CGTGCAGGAGCTACTACCGA 61.374 60.000 0.00 0.00 42.74 4.69
2795 7820 3.157680 CAGGACCCTTCCACGGTT 58.842 61.111 0.00 0.00 45.72 4.44
2862 7887 1.296392 CACCGTGGCTCAAGGATGA 59.704 57.895 12.63 0.00 36.54 2.92
2951 7976 4.203076 GCCGGTGCCGACGTCTAT 62.203 66.667 14.70 0.00 42.83 1.98
2966 7991 0.396060 TCTATGGGCGCATGTGCATA 59.604 50.000 30.73 19.47 42.21 3.14
3003 8028 4.662961 CTCCGTCGCTGGCACACA 62.663 66.667 0.00 0.00 0.00 3.72
3027 8052 2.202878 CGGAGTACGGTGGCATGG 60.203 66.667 0.00 0.00 39.42 3.66
3029 8054 1.600107 GGAGTACGGTGGCATGGAA 59.400 57.895 0.00 0.00 0.00 3.53
3030 8055 0.462047 GGAGTACGGTGGCATGGAAG 60.462 60.000 0.00 0.00 0.00 3.46
3032 8057 0.036388 AGTACGGTGGCATGGAAGTG 60.036 55.000 0.00 0.00 0.00 3.16
3043 8068 1.162181 ATGGAAGTGCATGCCGATCG 61.162 55.000 16.68 8.51 0.00 3.69
3044 8069 2.325857 GAAGTGCATGCCGATCGC 59.674 61.111 16.68 6.08 38.31 4.58
3055 8080 3.038417 CGATCGCCTTCCCGATGC 61.038 66.667 0.26 0.00 46.90 3.91
3068 8093 1.521457 CGATGCCGTGGTGCACTAT 60.521 57.895 17.98 0.00 45.48 2.12
3072 8097 1.079127 GCCGTGGTGCACTATCAGT 60.079 57.895 17.98 0.00 31.34 3.41
3073 8098 1.084370 GCCGTGGTGCACTATCAGTC 61.084 60.000 17.98 0.00 31.34 3.51
3075 8100 1.749063 CCGTGGTGCACTATCAGTCTA 59.251 52.381 17.98 0.00 31.34 2.59
3078 8103 1.757118 TGGTGCACTATCAGTCTAGGC 59.243 52.381 17.98 0.00 0.00 3.93
3082 8107 3.068732 GTGCACTATCAGTCTAGGCATCA 59.931 47.826 10.32 0.00 31.86 3.07
3087 8112 7.102346 GCACTATCAGTCTAGGCATCATTAAT 58.898 38.462 0.00 0.00 0.00 1.40
3091 8116 9.368674 CTATCAGTCTAGGCATCATTAATTCAG 57.631 37.037 0.00 0.00 0.00 3.02
3093 8118 8.250143 TCAGTCTAGGCATCATTAATTCAGTA 57.750 34.615 0.00 0.00 0.00 2.74
3097 8122 8.983724 GTCTAGGCATCATTAATTCAGTAACTC 58.016 37.037 0.00 0.00 0.00 3.01
3100 8125 6.261826 AGGCATCATTAATTCAGTAACTCTGC 59.738 38.462 0.00 0.00 43.32 4.26
3108 8133 8.851960 TTAATTCAGTAACTCTGCGTATGTAG 57.148 34.615 0.00 0.00 43.32 2.74
3109 8134 4.895224 TCAGTAACTCTGCGTATGTAGG 57.105 45.455 0.00 0.00 43.32 3.18
3110 8135 4.520179 TCAGTAACTCTGCGTATGTAGGA 58.480 43.478 0.00 0.00 43.32 2.94
3111 8136 4.575236 TCAGTAACTCTGCGTATGTAGGAG 59.425 45.833 0.00 0.13 43.32 3.69
3112 8137 4.335874 CAGTAACTCTGCGTATGTAGGAGT 59.664 45.833 0.00 0.70 37.36 3.85
3113 8138 5.526479 CAGTAACTCTGCGTATGTAGGAGTA 59.474 44.000 0.00 0.00 37.36 2.59
3114 8139 4.897025 AACTCTGCGTATGTAGGAGTAC 57.103 45.455 0.00 0.00 0.00 2.73
3115 8140 3.882444 ACTCTGCGTATGTAGGAGTACA 58.118 45.455 0.00 0.00 43.43 2.90
3117 8142 5.618236 ACTCTGCGTATGTAGGAGTACATA 58.382 41.667 0.00 1.87 46.25 2.29
3138 8163 7.254137 ACATATATAGTACATCTGCAGCTTCG 58.746 38.462 9.47 0.00 0.00 3.79
3171 8196 2.930385 TTAGCGAGGCATGGAGCTGC 62.930 60.000 0.00 0.00 44.79 5.25
3237 8263 5.533528 ACAGGGTAACAGGTACAAATGTTTC 59.466 40.000 13.43 9.58 40.09 2.78
3246 8272 3.735746 GGTACAAATGTTTCTTGTGCTGC 59.264 43.478 0.00 0.00 38.82 5.25
3270 8296 6.592607 GCATTTGTTCTGGATGTTGAAATCAT 59.407 34.615 0.00 0.00 0.00 2.45
3317 8344 7.593825 AGTTACAATACCAAAGCACAATTCTC 58.406 34.615 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 1.380650 AGGACTCCTCCTCCGCTTC 60.381 63.158 0.00 0.00 44.59 3.86
117 118 2.774327 AGGACTCCTCCTCCGCTT 59.226 61.111 0.00 0.00 44.59 4.68
125 126 0.955905 GCCTATGTCGAGGACTCCTC 59.044 60.000 14.52 14.52 46.44 3.71
126 127 0.820074 CGCCTATGTCGAGGACTCCT 60.820 60.000 0.00 0.00 39.15 3.69
127 128 1.655329 CGCCTATGTCGAGGACTCC 59.345 63.158 0.00 0.00 39.15 3.85
128 129 1.008309 GCGCCTATGTCGAGGACTC 60.008 63.158 0.00 0.00 39.15 3.36
129 130 1.454111 AGCGCCTATGTCGAGGACT 60.454 57.895 2.29 0.00 39.15 3.85
130 131 1.299468 CAGCGCCTATGTCGAGGAC 60.299 63.158 2.29 0.00 39.15 3.85
131 132 3.120105 CAGCGCCTATGTCGAGGA 58.880 61.111 2.29 0.00 39.15 3.71
132 133 2.659897 GCAGCGCCTATGTCGAGG 60.660 66.667 2.29 0.00 39.88 4.63
133 134 1.948138 CAGCAGCGCCTATGTCGAG 60.948 63.158 2.29 0.00 0.00 4.04
134 135 2.104928 CAGCAGCGCCTATGTCGA 59.895 61.111 2.29 0.00 0.00 4.20
135 136 2.963854 CCAGCAGCGCCTATGTCG 60.964 66.667 2.29 0.00 0.00 4.35
136 137 3.275338 GCCAGCAGCGCCTATGTC 61.275 66.667 2.29 0.00 0.00 3.06
137 138 4.864334 GGCCAGCAGCGCCTATGT 62.864 66.667 2.29 0.00 45.17 2.29
146 147 4.537433 GTAGCTCCCGGCCAGCAG 62.537 72.222 21.92 2.02 43.05 4.24
149 150 4.208686 GTCGTAGCTCCCGGCCAG 62.209 72.222 2.24 0.00 43.05 4.85
150 151 4.753662 AGTCGTAGCTCCCGGCCA 62.754 66.667 2.24 0.00 43.05 5.36
151 152 4.208686 CAGTCGTAGCTCCCGGCC 62.209 72.222 6.69 0.00 43.05 6.13
152 153 4.208686 CCAGTCGTAGCTCCCGGC 62.209 72.222 0.00 2.33 42.19 6.13
153 154 2.439701 TCCAGTCGTAGCTCCCGG 60.440 66.667 0.00 0.00 0.00 5.73
154 155 3.111939 CTCCAGTCGTAGCTCCCG 58.888 66.667 0.00 0.00 0.00 5.14
155 156 1.755008 AGCTCCAGTCGTAGCTCCC 60.755 63.158 0.00 0.00 45.92 4.30
156 157 3.927501 AGCTCCAGTCGTAGCTCC 58.072 61.111 0.00 0.00 45.92 4.70
163 164 0.462225 TAGAGGACGAGCTCCAGTCG 60.462 60.000 8.47 0.00 42.46 4.18
164 165 1.018910 GTAGAGGACGAGCTCCAGTC 58.981 60.000 8.47 10.57 42.46 3.51
165 166 0.394625 GGTAGAGGACGAGCTCCAGT 60.395 60.000 8.47 0.15 42.46 4.00
166 167 0.106918 AGGTAGAGGACGAGCTCCAG 60.107 60.000 8.47 0.00 42.46 3.86
167 168 0.107116 GAGGTAGAGGACGAGCTCCA 60.107 60.000 8.47 0.00 42.46 3.86
168 169 0.181824 AGAGGTAGAGGACGAGCTCC 59.818 60.000 8.47 0.00 43.60 4.70
169 170 1.589803 GAGAGGTAGAGGACGAGCTC 58.410 60.000 2.73 2.73 43.15 4.09
170 171 0.179067 CGAGAGGTAGAGGACGAGCT 60.179 60.000 0.00 0.00 32.68 4.09
171 172 1.778027 GCGAGAGGTAGAGGACGAGC 61.778 65.000 0.00 0.00 0.00 5.03
172 173 0.462225 TGCGAGAGGTAGAGGACGAG 60.462 60.000 0.00 0.00 0.00 4.18
173 174 0.462225 CTGCGAGAGGTAGAGGACGA 60.462 60.000 0.00 0.00 0.00 4.20
174 175 1.440938 CCTGCGAGAGGTAGAGGACG 61.441 65.000 0.00 0.00 37.02 4.79
175 176 1.104577 CCCTGCGAGAGGTAGAGGAC 61.105 65.000 0.00 0.00 40.87 3.85
176 177 1.227664 CCCTGCGAGAGGTAGAGGA 59.772 63.158 0.00 0.00 40.87 3.71
177 178 2.494530 GCCCTGCGAGAGGTAGAGG 61.495 68.421 0.00 0.00 40.87 3.69
178 179 2.494530 GGCCCTGCGAGAGGTAGAG 61.495 68.421 0.00 0.00 40.87 2.43
179 180 2.442272 GGCCCTGCGAGAGGTAGA 60.442 66.667 0.00 0.00 40.87 2.59
180 181 2.759973 TGGCCCTGCGAGAGGTAG 60.760 66.667 0.00 0.00 40.87 3.18
181 182 3.075005 GTGGCCCTGCGAGAGGTA 61.075 66.667 0.00 0.00 40.87 3.08
184 185 4.154347 GAGGTGGCCCTGCGAGAG 62.154 72.222 0.00 0.00 42.86 3.20
288 289 4.069232 TCGCTGTCGGGCTCCTTG 62.069 66.667 0.00 0.00 36.13 3.61
289 290 4.070552 GTCGCTGTCGGGCTCCTT 62.071 66.667 0.00 0.00 36.13 3.36
291 292 4.803426 CAGTCGCTGTCGGGCTCC 62.803 72.222 0.00 0.00 36.13 4.70
292 293 3.749064 TCAGTCGCTGTCGGGCTC 61.749 66.667 6.72 0.00 36.13 4.70
293 294 4.057428 GTCAGTCGCTGTCGGGCT 62.057 66.667 6.72 0.00 36.13 5.19
295 296 4.436998 GGGTCAGTCGCTGTCGGG 62.437 72.222 6.72 0.00 36.13 5.14
296 297 4.436998 GGGGTCAGTCGCTGTCGG 62.437 72.222 6.72 0.00 36.13 4.79
297 298 4.778415 CGGGGTCAGTCGCTGTCG 62.778 72.222 6.72 4.46 32.61 4.35
321 322 2.109799 CTATCCACTGCCGGCTGG 59.890 66.667 33.10 29.17 38.77 4.85
322 323 1.227380 GTCTATCCACTGCCGGCTG 60.227 63.158 29.48 29.48 0.00 4.85
323 324 1.685765 TGTCTATCCACTGCCGGCT 60.686 57.895 29.70 8.67 0.00 5.52
324 325 1.521681 GTGTCTATCCACTGCCGGC 60.522 63.158 22.73 22.73 32.50 6.13
325 326 1.226974 CGTGTCTATCCACTGCCGG 60.227 63.158 0.00 0.00 33.07 6.13
326 327 1.878522 GCGTGTCTATCCACTGCCG 60.879 63.158 0.00 0.00 32.53 5.69
327 328 1.521681 GGCGTGTCTATCCACTGCC 60.522 63.158 9.94 9.94 42.86 4.85
328 329 0.391130 TTGGCGTGTCTATCCACTGC 60.391 55.000 0.00 0.00 35.56 4.40
329 330 1.359848 GTTGGCGTGTCTATCCACTG 58.640 55.000 0.00 0.00 33.07 3.66
330 331 0.108804 CGTTGGCGTGTCTATCCACT 60.109 55.000 0.00 0.00 33.07 4.00
331 332 1.082117 CCGTTGGCGTGTCTATCCAC 61.082 60.000 0.00 0.00 36.15 4.02
332 333 1.216977 CCGTTGGCGTGTCTATCCA 59.783 57.895 0.00 0.00 36.15 3.41
333 334 2.171725 GCCGTTGGCGTGTCTATCC 61.172 63.158 0.00 0.00 39.62 2.59
334 335 3.395669 GCCGTTGGCGTGTCTATC 58.604 61.111 0.00 0.00 39.62 2.08
363 364 4.657824 AGGTCACCGTGTTCGCCG 62.658 66.667 0.00 0.00 35.54 6.46
364 365 3.041940 CAGGTCACCGTGTTCGCC 61.042 66.667 0.00 0.00 35.54 5.54
365 366 3.041940 CCAGGTCACCGTGTTCGC 61.042 66.667 0.00 0.00 35.54 4.70
366 367 1.663702 GTCCAGGTCACCGTGTTCG 60.664 63.158 0.00 0.00 0.00 3.95
367 368 1.301479 GGTCCAGGTCACCGTGTTC 60.301 63.158 0.00 0.00 0.00 3.18
368 369 2.067605 TGGTCCAGGTCACCGTGTT 61.068 57.895 0.00 0.00 36.61 3.32
369 370 2.445085 TGGTCCAGGTCACCGTGT 60.445 61.111 0.00 0.00 36.61 4.49
370 371 2.030562 GTGGTCCAGGTCACCGTG 59.969 66.667 0.00 0.00 36.61 4.94
371 372 3.612681 CGTGGTCCAGGTCACCGT 61.613 66.667 3.24 0.00 36.61 4.83
372 373 4.373116 CCGTGGTCCAGGTCACCG 62.373 72.222 10.59 0.77 36.61 4.94
373 374 4.699522 GCCGTGGTCCAGGTCACC 62.700 72.222 10.59 0.00 0.00 4.02
379 380 4.135153 CTCTCCGCCGTGGTCCAG 62.135 72.222 0.00 0.00 39.52 3.86
386 387 4.824515 CTCCTCCCTCTCCGCCGT 62.825 72.222 0.00 0.00 0.00 5.68
387 388 3.801068 ATCTCCTCCCTCTCCGCCG 62.801 68.421 0.00 0.00 0.00 6.46
388 389 1.906333 GATCTCCTCCCTCTCCGCC 60.906 68.421 0.00 0.00 0.00 6.13
389 390 0.757188 TTGATCTCCTCCCTCTCCGC 60.757 60.000 0.00 0.00 0.00 5.54
390 391 1.327303 CTTGATCTCCTCCCTCTCCG 58.673 60.000 0.00 0.00 0.00 4.63
391 392 1.047801 GCTTGATCTCCTCCCTCTCC 58.952 60.000 0.00 0.00 0.00 3.71
392 393 0.673437 CGCTTGATCTCCTCCCTCTC 59.327 60.000 0.00 0.00 0.00 3.20
393 394 1.398958 GCGCTTGATCTCCTCCCTCT 61.399 60.000 0.00 0.00 0.00 3.69
394 395 1.068921 GCGCTTGATCTCCTCCCTC 59.931 63.158 0.00 0.00 0.00 4.30
395 396 2.790791 CGCGCTTGATCTCCTCCCT 61.791 63.158 5.56 0.00 0.00 4.20
396 397 2.279784 CGCGCTTGATCTCCTCCC 60.280 66.667 5.56 0.00 0.00 4.30
397 398 2.279784 CCGCGCTTGATCTCCTCC 60.280 66.667 5.56 0.00 0.00 4.30
398 399 2.964389 GCCGCGCTTGATCTCCTC 60.964 66.667 5.56 0.00 0.00 3.71
399 400 4.880537 CGCCGCGCTTGATCTCCT 62.881 66.667 5.56 0.00 0.00 3.69
401 402 4.873129 TCCGCCGCGCTTGATCTC 62.873 66.667 7.42 0.00 0.00 2.75
402 403 4.880537 CTCCGCCGCGCTTGATCT 62.881 66.667 7.42 0.00 0.00 2.75
403 404 4.873129 TCTCCGCCGCGCTTGATC 62.873 66.667 7.42 0.00 0.00 2.92
404 405 4.880537 CTCTCCGCCGCGCTTGAT 62.881 66.667 7.42 0.00 0.00 2.57
412 413 3.801068 ATCTCCTCCCTCTCCGCCG 62.801 68.421 0.00 0.00 0.00 6.46
413 414 1.906333 GATCTCCTCCCTCTCCGCC 60.906 68.421 0.00 0.00 0.00 6.13
414 415 1.906333 GGATCTCCTCCCTCTCCGC 60.906 68.421 0.00 0.00 38.19 5.54
415 416 0.539438 CTGGATCTCCTCCCTCTCCG 60.539 65.000 0.00 0.00 44.23 4.63
416 417 0.831711 GCTGGATCTCCTCCCTCTCC 60.832 65.000 0.00 0.00 44.23 3.71
417 418 1.178534 CGCTGGATCTCCTCCCTCTC 61.179 65.000 0.00 0.00 44.23 3.20
418 419 1.152567 CGCTGGATCTCCTCCCTCT 60.153 63.158 0.00 0.00 44.23 3.69
419 420 2.866726 GCGCTGGATCTCCTCCCTC 61.867 68.421 0.00 0.00 44.23 4.30
420 421 2.841988 GCGCTGGATCTCCTCCCT 60.842 66.667 0.00 0.00 44.23 4.20
421 422 3.157252 TGCGCTGGATCTCCTCCC 61.157 66.667 9.73 0.00 44.23 4.30
422 423 2.420890 CTGCGCTGGATCTCCTCC 59.579 66.667 9.73 0.00 45.19 4.30
423 424 2.280052 GCTGCGCTGGATCTCCTC 60.280 66.667 16.47 0.00 36.82 3.71
424 425 4.218578 CGCTGCGCTGGATCTCCT 62.219 66.667 16.47 0.00 36.82 3.69
442 443 4.477975 GGGTCCTCGACACGCTCG 62.478 72.222 0.00 0.00 44.44 5.03
443 444 3.063084 AGGGTCCTCGACACGCTC 61.063 66.667 4.02 0.00 41.43 5.03
444 445 3.374402 CAGGGTCCTCGACACGCT 61.374 66.667 4.02 4.02 41.43 5.07
445 446 4.436998 CCAGGGTCCTCGACACGC 62.437 72.222 0.00 0.00 41.43 5.34
446 447 2.989824 ACCAGGGTCCTCGACACG 60.990 66.667 0.00 0.00 41.43 4.49
447 448 2.657237 CACCAGGGTCCTCGACAC 59.343 66.667 0.00 0.00 36.00 3.67
448 449 2.603473 CCACCAGGGTCCTCGACA 60.603 66.667 0.00 0.00 33.68 4.35
449 450 4.083862 GCCACCAGGGTCCTCGAC 62.084 72.222 0.00 0.00 39.65 4.20
452 453 3.017581 ATGGCCACCAGGGTCCTC 61.018 66.667 8.16 0.00 42.20 3.71
453 454 3.341629 CATGGCCACCAGGGTCCT 61.342 66.667 8.16 0.00 42.20 3.85
458 459 4.133373 CCTCCCATGGCCACCAGG 62.133 72.222 8.16 11.08 36.75 4.45
459 460 4.133373 CCCTCCCATGGCCACCAG 62.133 72.222 8.16 0.00 36.75 4.00
460 461 4.692041 TCCCTCCCATGGCCACCA 62.692 66.667 8.16 0.00 38.19 4.17
461 462 3.813724 CTCCCTCCCATGGCCACC 61.814 72.222 8.16 0.00 0.00 4.61
462 463 4.512914 GCTCCCTCCCATGGCCAC 62.513 72.222 8.16 0.00 0.00 5.01
463 464 4.765970 AGCTCCCTCCCATGGCCA 62.766 66.667 8.56 8.56 0.00 5.36
464 465 3.883549 GAGCTCCCTCCCATGGCC 61.884 72.222 6.09 0.00 31.68 5.36
465 466 4.247380 CGAGCTCCCTCCCATGGC 62.247 72.222 6.09 0.00 34.49 4.40
466 467 1.414061 AATCGAGCTCCCTCCCATGG 61.414 60.000 8.47 4.14 34.49 3.66
467 468 0.034616 GAATCGAGCTCCCTCCCATG 59.965 60.000 8.47 0.00 34.49 3.66
468 469 1.124477 GGAATCGAGCTCCCTCCCAT 61.124 60.000 8.47 0.00 34.49 4.00
469 470 1.762460 GGAATCGAGCTCCCTCCCA 60.762 63.158 8.47 0.00 34.49 4.37
470 471 3.143338 GGAATCGAGCTCCCTCCC 58.857 66.667 8.47 1.00 34.49 4.30
475 476 2.512355 GGGGAGGGAATCGAGCTCC 61.512 68.421 8.47 7.65 0.00 4.70
476 477 2.862223 CGGGGAGGGAATCGAGCTC 61.862 68.421 2.73 2.73 0.00 4.09
477 478 2.840102 CGGGGAGGGAATCGAGCT 60.840 66.667 0.00 0.00 0.00 4.09
478 479 2.838225 TCGGGGAGGGAATCGAGC 60.838 66.667 0.00 0.00 0.00 5.03
479 480 3.449349 CTCGGGGAGGGAATCGAG 58.551 66.667 0.00 0.00 42.09 4.04
480 481 2.838225 GCTCGGGGAGGGAATCGA 60.838 66.667 0.00 0.00 0.00 3.59
481 482 2.840102 AGCTCGGGGAGGGAATCG 60.840 66.667 0.00 0.00 0.00 3.34
482 483 1.458588 AGAGCTCGGGGAGGGAATC 60.459 63.158 8.37 0.00 0.00 2.52
483 484 1.764054 CAGAGCTCGGGGAGGGAAT 60.764 63.158 8.37 0.00 0.00 3.01
484 485 2.364317 CAGAGCTCGGGGAGGGAA 60.364 66.667 8.37 0.00 0.00 3.97
485 486 4.465446 CCAGAGCTCGGGGAGGGA 62.465 72.222 23.85 0.00 0.00 4.20
486 487 4.787280 ACCAGAGCTCGGGGAGGG 62.787 72.222 32.39 18.51 35.41 4.30
487 488 3.151022 GACCAGAGCTCGGGGAGG 61.151 72.222 32.39 20.33 35.41 4.30
488 489 3.151022 GGACCAGAGCTCGGGGAG 61.151 72.222 32.39 11.82 35.41 4.30
489 490 3.965026 CTGGACCAGAGCTCGGGGA 62.965 68.421 32.39 17.11 35.41 4.81
490 491 3.465403 CTGGACCAGAGCTCGGGG 61.465 72.222 32.39 26.79 35.41 5.73
491 492 3.465403 CCTGGACCAGAGCTCGGG 61.465 72.222 28.76 28.76 37.23 5.14
492 493 1.333636 ATTCCTGGACCAGAGCTCGG 61.334 60.000 23.77 19.02 32.44 4.63
493 494 0.179089 CATTCCTGGACCAGAGCTCG 60.179 60.000 23.77 5.70 32.44 5.03
494 495 0.463474 GCATTCCTGGACCAGAGCTC 60.463 60.000 23.77 5.27 32.44 4.09
495 496 1.606531 GCATTCCTGGACCAGAGCT 59.393 57.895 23.77 3.47 32.44 4.09
496 497 1.452833 GGCATTCCTGGACCAGAGC 60.453 63.158 23.77 18.75 32.44 4.09
497 498 1.153289 CGGCATTCCTGGACCAGAG 60.153 63.158 23.77 12.87 32.44 3.35
498 499 2.989639 CGGCATTCCTGGACCAGA 59.010 61.111 23.77 3.96 32.44 3.86
499 500 2.825836 GCGGCATTCCTGGACCAG 60.826 66.667 15.15 15.15 0.00 4.00
500 501 4.776322 CGCGGCATTCCTGGACCA 62.776 66.667 0.00 0.00 0.00 4.02
508 509 2.823829 AAATCGAGGCGCGGCATTC 61.824 57.895 34.94 22.59 41.33 2.67
509 510 2.824041 AAATCGAGGCGCGGCATT 60.824 55.556 34.94 21.96 41.33 3.56
510 511 3.576356 CAAATCGAGGCGCGGCAT 61.576 61.111 34.94 19.51 41.33 4.40
512 513 4.520846 CACAAATCGAGGCGCGGC 62.521 66.667 27.06 27.06 41.33 6.53
513 514 3.864686 CCACAAATCGAGGCGCGG 61.865 66.667 11.46 0.00 41.33 6.46
514 515 3.864686 CCCACAAATCGAGGCGCG 61.865 66.667 3.60 3.60 42.69 6.86
515 516 1.982073 CTTCCCACAAATCGAGGCGC 61.982 60.000 0.00 0.00 0.00 6.53
516 517 0.391130 TCTTCCCACAAATCGAGGCG 60.391 55.000 0.00 0.00 0.00 5.52
517 518 1.821216 TTCTTCCCACAAATCGAGGC 58.179 50.000 0.00 0.00 0.00 4.70
518 519 3.191371 CCTTTTCTTCCCACAAATCGAGG 59.809 47.826 0.00 0.00 0.00 4.63
519 520 3.191371 CCCTTTTCTTCCCACAAATCGAG 59.809 47.826 0.00 0.00 0.00 4.04
520 521 3.153919 CCCTTTTCTTCCCACAAATCGA 58.846 45.455 0.00 0.00 0.00 3.59
521 522 2.231235 CCCCTTTTCTTCCCACAAATCG 59.769 50.000 0.00 0.00 0.00 3.34
522 523 3.506398 TCCCCTTTTCTTCCCACAAATC 58.494 45.455 0.00 0.00 0.00 2.17
523 524 3.628832 TCCCCTTTTCTTCCCACAAAT 57.371 42.857 0.00 0.00 0.00 2.32
524 525 3.304829 CTTCCCCTTTTCTTCCCACAAA 58.695 45.455 0.00 0.00 0.00 2.83
525 526 2.425683 CCTTCCCCTTTTCTTCCCACAA 60.426 50.000 0.00 0.00 0.00 3.33
526 527 1.146982 CCTTCCCCTTTTCTTCCCACA 59.853 52.381 0.00 0.00 0.00 4.17
527 528 1.924731 CCTTCCCCTTTTCTTCCCAC 58.075 55.000 0.00 0.00 0.00 4.61
528 529 0.114364 GCCTTCCCCTTTTCTTCCCA 59.886 55.000 0.00 0.00 0.00 4.37
529 530 0.965866 CGCCTTCCCCTTTTCTTCCC 60.966 60.000 0.00 0.00 0.00 3.97
530 531 1.595993 GCGCCTTCCCCTTTTCTTCC 61.596 60.000 0.00 0.00 0.00 3.46
531 532 1.883732 GCGCCTTCCCCTTTTCTTC 59.116 57.895 0.00 0.00 0.00 2.87
532 533 1.971695 CGCGCCTTCCCCTTTTCTT 60.972 57.895 0.00 0.00 0.00 2.52
533 534 2.359975 CGCGCCTTCCCCTTTTCT 60.360 61.111 0.00 0.00 0.00 2.52
534 535 3.440415 CCGCGCCTTCCCCTTTTC 61.440 66.667 0.00 0.00 0.00 2.29
549 550 3.814268 CCACAAATCAGCGGCCCG 61.814 66.667 0.00 0.00 0.00 6.13
550 551 3.451894 CCCACAAATCAGCGGCCC 61.452 66.667 0.00 0.00 0.00 5.80
551 552 3.451894 CCCCACAAATCAGCGGCC 61.452 66.667 0.00 0.00 0.00 6.13
552 553 4.133796 GCCCCACAAATCAGCGGC 62.134 66.667 0.00 0.00 0.00 6.53
553 554 3.451894 GGCCCCACAAATCAGCGG 61.452 66.667 0.00 0.00 0.00 5.52
554 555 2.053865 ATGGCCCCACAAATCAGCG 61.054 57.895 0.00 0.00 0.00 5.18
555 556 1.518774 CATGGCCCCACAAATCAGC 59.481 57.895 0.00 0.00 0.00 4.26
556 557 0.615544 ACCATGGCCCCACAAATCAG 60.616 55.000 13.04 0.00 0.00 2.90
557 558 0.903924 CACCATGGCCCCACAAATCA 60.904 55.000 13.04 0.00 0.00 2.57
558 559 1.616091 CCACCATGGCCCCACAAATC 61.616 60.000 13.04 0.00 0.00 2.17
559 560 1.613035 CCACCATGGCCCCACAAAT 60.613 57.895 13.04 0.00 0.00 2.32
560 561 2.203758 CCACCATGGCCCCACAAA 60.204 61.111 13.04 0.00 0.00 2.83
561 562 3.188903 TCCACCATGGCCCCACAA 61.189 61.111 13.04 0.00 37.47 3.33
562 563 3.978193 GTCCACCATGGCCCCACA 61.978 66.667 13.04 0.00 37.47 4.17
563 564 3.978193 TGTCCACCATGGCCCCAC 61.978 66.667 13.04 4.15 37.47 4.61
564 565 3.978193 GTGTCCACCATGGCCCCA 61.978 66.667 13.04 0.23 37.47 4.96
566 567 3.976701 CTCGTGTCCACCATGGCCC 62.977 68.421 13.04 0.00 37.47 5.80
567 568 2.436646 CTCGTGTCCACCATGGCC 60.437 66.667 13.04 0.00 37.47 5.36
568 569 1.448540 CTCTCGTGTCCACCATGGC 60.449 63.158 13.04 0.00 37.47 4.40
569 570 1.219124 CCTCTCGTGTCCACCATGG 59.781 63.158 11.19 11.19 39.43 3.66
570 571 1.448540 GCCTCTCGTGTCCACCATG 60.449 63.158 0.00 0.00 0.00 3.66
571 572 2.660064 GGCCTCTCGTGTCCACCAT 61.660 63.158 0.00 0.00 0.00 3.55
572 573 3.311110 GGCCTCTCGTGTCCACCA 61.311 66.667 0.00 0.00 0.00 4.17
573 574 3.311110 TGGCCTCTCGTGTCCACC 61.311 66.667 3.32 0.00 0.00 4.61
574 575 2.048127 GTGGCCTCTCGTGTCCAC 60.048 66.667 3.32 9.27 41.66 4.02
575 576 3.311110 GGTGGCCTCTCGTGTCCA 61.311 66.667 3.32 0.00 0.00 4.02
576 577 3.302347 CTGGTGGCCTCTCGTGTCC 62.302 68.421 3.32 0.00 0.00 4.02
577 578 2.262915 CTGGTGGCCTCTCGTGTC 59.737 66.667 3.32 0.00 0.00 3.67
578 579 3.314331 CCTGGTGGCCTCTCGTGT 61.314 66.667 3.32 0.00 0.00 4.49
588 589 4.181010 CTCCCATCCGCCTGGTGG 62.181 72.222 20.45 20.45 36.65 4.61
589 590 4.864334 GCTCCCATCCGCCTGGTG 62.864 72.222 0.00 0.00 34.23 4.17
596 597 4.570663 GTCGTCCGCTCCCATCCG 62.571 72.222 0.00 0.00 0.00 4.18
597 598 4.570663 CGTCGTCCGCTCCCATCC 62.571 72.222 0.00 0.00 0.00 3.51
618 619 3.631049 GACGGACAAAAGCGAGCGC 62.631 63.158 6.78 6.78 42.33 5.92
619 620 2.470286 GACGGACAAAAGCGAGCG 59.530 61.111 0.00 0.00 0.00 5.03
620 621 2.470286 CGACGGACAAAAGCGAGC 59.530 61.111 0.00 0.00 0.00 5.03
621 622 2.470286 GCGACGGACAAAAGCGAG 59.530 61.111 0.00 0.00 0.00 5.03
633 634 2.235536 GAACAAATGGGTCCGCGACG 62.236 60.000 8.23 0.00 32.65 5.12
634 635 1.500396 GAACAAATGGGTCCGCGAC 59.500 57.895 8.23 3.56 0.00 5.19
635 636 1.673009 GGAACAAATGGGTCCGCGA 60.673 57.895 8.23 0.00 0.00 5.87
636 637 2.696759 GGGAACAAATGGGTCCGCG 61.697 63.158 0.00 0.00 0.00 6.46
637 638 1.605165 TGGGAACAAATGGGTCCGC 60.605 57.895 0.00 0.00 37.44 5.54
638 639 4.832741 TGGGAACAAATGGGTCCG 57.167 55.556 0.00 0.00 37.44 4.79
648 649 8.272584 CCCAAATTAAACGCAAATATGGGAACA 61.273 37.037 0.67 0.00 46.32 3.18
649 650 6.036626 CCCAAATTAAACGCAAATATGGGAAC 59.963 38.462 0.67 0.00 46.32 3.62
650 651 6.109359 CCCAAATTAAACGCAAATATGGGAA 58.891 36.000 0.67 0.00 46.32 3.97
651 652 5.187967 ACCCAAATTAAACGCAAATATGGGA 59.812 36.000 13.59 0.00 46.32 4.37
652 653 5.982465 CCCAAATTAAACGCAAATATGGG 57.018 39.130 0.00 0.00 44.57 4.00
653 654 5.522097 GGACCCAAATTAAACGCAAATATGG 59.478 40.000 0.00 0.00 0.00 2.74
654 655 5.231147 CGGACCCAAATTAAACGCAAATATG 59.769 40.000 0.00 0.00 0.00 1.78
655 656 5.344884 CGGACCCAAATTAAACGCAAATAT 58.655 37.500 0.00 0.00 0.00 1.28
656 657 4.380655 CCGGACCCAAATTAAACGCAAATA 60.381 41.667 0.00 0.00 0.00 1.40
657 658 3.580731 CGGACCCAAATTAAACGCAAAT 58.419 40.909 0.00 0.00 0.00 2.32
658 659 2.288273 CCGGACCCAAATTAAACGCAAA 60.288 45.455 0.00 0.00 0.00 3.68
659 660 1.269998 CCGGACCCAAATTAAACGCAA 59.730 47.619 0.00 0.00 0.00 4.85
660 661 0.882474 CCGGACCCAAATTAAACGCA 59.118 50.000 0.00 0.00 0.00 5.24
661 662 1.166989 TCCGGACCCAAATTAAACGC 58.833 50.000 0.00 0.00 0.00 4.84
662 663 2.413108 CGTTCCGGACCCAAATTAAACG 60.413 50.000 1.83 3.14 33.36 3.60
663 664 3.206034 CGTTCCGGACCCAAATTAAAC 57.794 47.619 1.83 0.00 0.00 2.01
677 678 0.458889 TCCGCTTATTGTCCGTTCCG 60.459 55.000 0.00 0.00 0.00 4.30
678 679 1.004595 GTCCGCTTATTGTCCGTTCC 58.995 55.000 0.00 0.00 0.00 3.62
679 680 1.659098 CTGTCCGCTTATTGTCCGTTC 59.341 52.381 0.00 0.00 0.00 3.95
680 681 1.722011 CTGTCCGCTTATTGTCCGTT 58.278 50.000 0.00 0.00 0.00 4.44
681 682 0.739813 GCTGTCCGCTTATTGTCCGT 60.740 55.000 0.00 0.00 35.14 4.69
682 683 1.752501 CGCTGTCCGCTTATTGTCCG 61.753 60.000 0.00 0.00 36.13 4.79
683 684 1.429148 CCGCTGTCCGCTTATTGTCC 61.429 60.000 0.00 0.00 36.13 4.02
684 685 0.459585 TCCGCTGTCCGCTTATTGTC 60.460 55.000 0.00 0.00 36.13 3.18
685 686 0.739813 GTCCGCTGTCCGCTTATTGT 60.740 55.000 0.00 0.00 36.13 2.71
686 687 1.752501 CGTCCGCTGTCCGCTTATTG 61.753 60.000 0.00 0.00 36.13 1.90
687 688 1.518572 CGTCCGCTGTCCGCTTATT 60.519 57.895 0.00 0.00 36.13 1.40
688 689 2.104331 CGTCCGCTGTCCGCTTAT 59.896 61.111 0.00 0.00 36.13 1.73
689 690 4.124351 CCGTCCGCTGTCCGCTTA 62.124 66.667 0.00 0.00 36.13 3.09
694 695 2.088674 ATAGCATCCGTCCGCTGTCC 62.089 60.000 0.00 0.00 39.30 4.02
695 696 0.941463 CATAGCATCCGTCCGCTGTC 60.941 60.000 0.00 0.00 39.30 3.51
696 697 1.068083 CATAGCATCCGTCCGCTGT 59.932 57.895 0.00 0.00 39.30 4.40
697 698 0.530650 AACATAGCATCCGTCCGCTG 60.531 55.000 0.00 0.00 39.30 5.18
698 699 0.249489 GAACATAGCATCCGTCCGCT 60.249 55.000 0.00 0.00 42.34 5.52
699 700 1.548973 CGAACATAGCATCCGTCCGC 61.549 60.000 0.00 0.00 0.00 5.54
700 701 0.248907 ACGAACATAGCATCCGTCCG 60.249 55.000 0.00 0.00 0.00 4.79
701 702 1.935933 AACGAACATAGCATCCGTCC 58.064 50.000 0.00 0.00 32.64 4.79
702 703 2.030457 CCAAACGAACATAGCATCCGTC 59.970 50.000 0.00 0.00 32.64 4.79
703 704 2.006888 CCAAACGAACATAGCATCCGT 58.993 47.619 0.00 0.00 34.74 4.69
704 705 1.330521 CCCAAACGAACATAGCATCCG 59.669 52.381 0.00 0.00 0.00 4.18
705 706 2.365582 ACCCAAACGAACATAGCATCC 58.634 47.619 0.00 0.00 0.00 3.51
706 707 3.190535 ACAACCCAAACGAACATAGCATC 59.809 43.478 0.00 0.00 0.00 3.91
707 708 3.153919 ACAACCCAAACGAACATAGCAT 58.846 40.909 0.00 0.00 0.00 3.79
708 709 2.550606 GACAACCCAAACGAACATAGCA 59.449 45.455 0.00 0.00 0.00 3.49
709 710 2.095415 GGACAACCCAAACGAACATAGC 60.095 50.000 0.00 0.00 34.14 2.97
710 711 3.824414 GGACAACCCAAACGAACATAG 57.176 47.619 0.00 0.00 34.14 2.23
730 731 3.377172 GGACAGAAAATATGACCCAACGG 59.623 47.826 0.00 0.00 0.00 4.44
731 732 3.063452 CGGACAGAAAATATGACCCAACG 59.937 47.826 0.00 0.00 0.00 4.10
732 733 3.377172 CCGGACAGAAAATATGACCCAAC 59.623 47.826 0.00 0.00 0.00 3.77
733 734 3.264706 TCCGGACAGAAAATATGACCCAA 59.735 43.478 0.00 0.00 0.00 4.12
734 735 2.841266 TCCGGACAGAAAATATGACCCA 59.159 45.455 0.00 0.00 0.00 4.51
735 736 3.203716 GTCCGGACAGAAAATATGACCC 58.796 50.000 29.75 0.00 0.00 4.46
736 737 3.203716 GGTCCGGACAGAAAATATGACC 58.796 50.000 34.40 10.64 34.81 4.02
737 738 3.869065 TGGTCCGGACAGAAAATATGAC 58.131 45.455 34.40 13.83 0.00 3.06
738 739 4.408921 AGATGGTCCGGACAGAAAATATGA 59.591 41.667 34.40 6.29 0.00 2.15
739 740 4.708177 AGATGGTCCGGACAGAAAATATG 58.292 43.478 34.40 0.00 0.00 1.78
740 741 6.494666 TTAGATGGTCCGGACAGAAAATAT 57.505 37.500 34.40 18.20 0.00 1.28
741 742 5.943349 TTAGATGGTCCGGACAGAAAATA 57.057 39.130 34.40 16.38 0.00 1.40
742 743 4.837093 TTAGATGGTCCGGACAGAAAAT 57.163 40.909 34.40 18.99 0.00 1.82
743 744 4.627284 TTTAGATGGTCCGGACAGAAAA 57.373 40.909 34.40 21.97 0.00 2.29
744 745 4.513442 CATTTAGATGGTCCGGACAGAAA 58.487 43.478 34.40 23.70 0.00 2.52
745 746 3.118408 CCATTTAGATGGTCCGGACAGAA 60.118 47.826 34.40 20.22 46.48 3.02
746 747 2.434336 CCATTTAGATGGTCCGGACAGA 59.566 50.000 34.40 21.29 46.48 3.41
747 748 2.838736 CCATTTAGATGGTCCGGACAG 58.161 52.381 34.40 12.35 46.48 3.51
757 758 6.207417 AGCGACCCATTTTATCCATTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
758 759 6.306987 AGCGACCCATTTTATCCATTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
759 760 5.690865 AGCGACCCATTTTATCCATTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
760 761 5.048713 GGAGCGACCCATTTTATCCATTTAG 60.049 44.000 0.00 0.00 0.00 1.85
761 762 4.825085 GGAGCGACCCATTTTATCCATTTA 59.175 41.667 0.00 0.00 0.00 1.40
762 763 3.636764 GGAGCGACCCATTTTATCCATTT 59.363 43.478 0.00 0.00 0.00 2.32
763 764 3.222603 GGAGCGACCCATTTTATCCATT 58.777 45.455 0.00 0.00 0.00 3.16
764 765 2.174639 TGGAGCGACCCATTTTATCCAT 59.825 45.455 0.00 0.00 38.00 3.41
765 766 1.562008 TGGAGCGACCCATTTTATCCA 59.438 47.619 0.00 0.00 38.00 3.41
766 767 2.341846 TGGAGCGACCCATTTTATCC 57.658 50.000 0.00 0.00 38.00 2.59
774 775 0.400213 AACTTCAATGGAGCGACCCA 59.600 50.000 0.00 0.00 41.05 4.51
775 776 0.804989 CAACTTCAATGGAGCGACCC 59.195 55.000 0.00 0.00 38.00 4.46
776 777 0.169009 GCAACTTCAATGGAGCGACC 59.831 55.000 0.00 0.00 39.54 4.79
777 778 1.129437 GAGCAACTTCAATGGAGCGAC 59.871 52.381 0.00 0.00 0.00 5.19
778 779 1.002430 AGAGCAACTTCAATGGAGCGA 59.998 47.619 0.00 0.00 0.00 4.93
779 780 1.446907 AGAGCAACTTCAATGGAGCG 58.553 50.000 0.00 0.00 0.00 5.03
780 781 5.008118 GGTATTAGAGCAACTTCAATGGAGC 59.992 44.000 0.00 0.00 0.00 4.70
781 782 6.037610 GTGGTATTAGAGCAACTTCAATGGAG 59.962 42.308 0.00 0.00 37.28 3.86
782 783 5.880332 GTGGTATTAGAGCAACTTCAATGGA 59.120 40.000 0.00 0.00 37.28 3.41
783 784 5.220662 CGTGGTATTAGAGCAACTTCAATGG 60.221 44.000 0.00 0.00 37.28 3.16
784 785 5.580691 TCGTGGTATTAGAGCAACTTCAATG 59.419 40.000 0.00 0.00 37.28 2.82
785 786 5.581085 GTCGTGGTATTAGAGCAACTTCAAT 59.419 40.000 0.00 0.00 37.28 2.57
786 787 4.927425 GTCGTGGTATTAGAGCAACTTCAA 59.073 41.667 0.00 0.00 37.28 2.69
787 788 4.491676 GTCGTGGTATTAGAGCAACTTCA 58.508 43.478 0.00 0.00 37.28 3.02
788 789 3.546670 CGTCGTGGTATTAGAGCAACTTC 59.453 47.826 0.00 0.00 37.28 3.01
789 790 3.508762 CGTCGTGGTATTAGAGCAACTT 58.491 45.455 0.00 0.00 37.28 2.66
790 791 2.159282 CCGTCGTGGTATTAGAGCAACT 60.159 50.000 0.00 0.00 37.28 3.16
791 792 2.190981 CCGTCGTGGTATTAGAGCAAC 58.809 52.381 0.00 0.00 37.28 4.17
792 793 1.470285 GCCGTCGTGGTATTAGAGCAA 60.470 52.381 0.00 0.00 41.21 3.91
793 794 0.101759 GCCGTCGTGGTATTAGAGCA 59.898 55.000 0.00 0.00 41.21 4.26
794 795 0.933509 CGCCGTCGTGGTATTAGAGC 60.934 60.000 0.00 0.00 41.21 4.09
797 798 2.290789 CGCGCCGTCGTGGTATTAG 61.291 63.158 0.00 0.00 42.06 1.73
814 815 2.661566 CCAGACTTGTGTGCTCGCG 61.662 63.158 0.00 0.00 0.00 5.87
933 941 3.508840 CGGGCGTTGAATGGGAGC 61.509 66.667 0.00 0.00 0.00 4.70
948 956 1.730487 CTGGTGAGATCGAGGTCGG 59.270 63.158 0.00 0.00 40.29 4.79
956 964 1.680249 GGTTTGGGAGCTGGTGAGATC 60.680 57.143 0.00 0.00 33.54 2.75
981 994 3.857854 GAGTGGTGCATGCGCGAG 61.858 66.667 24.00 0.00 42.97 5.03
984 997 3.136123 ATGGAGTGGTGCATGCGC 61.136 61.111 23.05 23.05 32.59 6.09
1079 1126 1.341606 CGAACGACTCTGGAAGAAGC 58.658 55.000 0.00 0.00 46.34 3.86
1115 1162 3.788766 GCGTGACACCACCATCGC 61.789 66.667 0.00 0.00 40.12 4.58
1139 1186 1.103803 GTCGGTGATGCTGGAGTAGA 58.896 55.000 0.00 0.00 0.00 2.59
1302 1686 1.191489 TCTTGCATCCGTGGGACTCA 61.191 55.000 0.00 0.00 32.98 3.41
1314 1698 1.220206 CGGACTGCCTCTCTTGCAT 59.780 57.895 0.00 0.00 38.22 3.96
1356 1740 0.032540 TGTGATGATCAGCCGATCCG 59.967 55.000 8.78 0.00 46.50 4.18
1444 1853 2.852714 TGGATGGGCAAGAAATCCAT 57.147 45.000 0.00 0.00 43.85 3.41
1462 1875 3.126073 CACATGTGATAGATGGTCGGTG 58.874 50.000 21.64 0.00 0.00 4.94
1482 1895 6.811665 CCTCTAATCAACAAGTCATACGAACA 59.188 38.462 0.00 0.00 0.00 3.18
1485 1898 5.163447 CCCCTCTAATCAACAAGTCATACGA 60.163 44.000 0.00 0.00 0.00 3.43
1492 1905 6.183347 CAATTCTCCCCTCTAATCAACAAGT 58.817 40.000 0.00 0.00 0.00 3.16
1493 1906 6.183347 ACAATTCTCCCCTCTAATCAACAAG 58.817 40.000 0.00 0.00 0.00 3.16
1498 1911 6.498651 GGATCTACAATTCTCCCCTCTAATCA 59.501 42.308 0.00 0.00 0.00 2.57
1509 1922 5.163540 ACGTACCAGTGGATCTACAATTCTC 60.164 44.000 18.40 0.00 0.00 2.87
1514 1927 3.159472 ACACGTACCAGTGGATCTACAA 58.841 45.455 18.40 0.00 45.80 2.41
1750 2864 1.021390 GCAGCACCGCTACAATCAGT 61.021 55.000 0.00 0.00 36.40 3.41
1751 2865 0.742281 AGCAGCACCGCTACAATCAG 60.742 55.000 0.00 0.00 41.55 2.90
1766 2997 2.229062 TCTGTCTCTCGGTACAAAGCAG 59.771 50.000 0.00 0.00 0.00 4.24
1788 3019 1.486439 CGCCAACAACAACAACATCC 58.514 50.000 0.00 0.00 0.00 3.51
1789 3020 0.852136 GCGCCAACAACAACAACATC 59.148 50.000 0.00 0.00 0.00 3.06
1790 3021 0.459489 AGCGCCAACAACAACAACAT 59.541 45.000 2.29 0.00 0.00 2.71
1791 3022 0.457509 CAGCGCCAACAACAACAACA 60.458 50.000 2.29 0.00 0.00 3.33
1820 3976 4.860022 ACCCCTACTTCCATTTCATTCAG 58.140 43.478 0.00 0.00 0.00 3.02
1823 3979 5.480422 GTGAAACCCCTACTTCCATTTCATT 59.520 40.000 0.00 0.00 38.09 2.57
1841 3997 5.017294 TGATTGAAAAACAGGGGTGAAAC 57.983 39.130 0.00 0.00 0.00 2.78
1885 4099 3.428999 CCAGTTGATCTACATCGAACGGT 60.429 47.826 9.96 0.00 31.00 4.83
1889 4103 3.195610 ACTGCCAGTTGATCTACATCGAA 59.804 43.478 9.96 0.00 0.00 3.71
1896 4110 3.023832 TCGATCACTGCCAGTTGATCTA 58.976 45.455 22.93 15.59 34.04 1.98
1916 4130 4.571372 ACTAGCTAGTTATCTGCCGTTC 57.429 45.455 20.95 0.00 31.13 3.95
1919 4133 4.745620 GGAAAACTAGCTAGTTATCTGCCG 59.254 45.833 33.60 3.78 45.17 5.69
1924 4138 4.056740 GCCGGGAAAACTAGCTAGTTATC 58.943 47.826 33.60 24.70 45.17 1.75
1998 6517 6.307800 CGTTTTTGACTTGATAATTTCGCCAT 59.692 34.615 0.00 0.00 0.00 4.40
2095 6614 2.503765 CTCCCCCTTCCTCTTCTTCTTC 59.496 54.545 0.00 0.00 0.00 2.87
2105 6624 0.916845 GCCTTCTTCTCCCCCTTCCT 60.917 60.000 0.00 0.00 0.00 3.36
2287 7057 1.701847 ACTGAGAAGTGGAAGGCATGT 59.298 47.619 0.00 0.00 0.00 3.21
2348 7119 3.000727 CGACTCAGAACATTTGGGGTAC 58.999 50.000 0.00 0.00 0.00 3.34
2354 7125 4.786507 TGCAATTCGACTCAGAACATTTG 58.213 39.130 0.00 0.00 32.39 2.32
2357 7128 3.005554 CCTGCAATTCGACTCAGAACAT 58.994 45.455 0.00 0.00 32.39 2.71
2358 7129 2.037121 TCCTGCAATTCGACTCAGAACA 59.963 45.455 0.00 0.00 32.39 3.18
2359 7130 2.413453 GTCCTGCAATTCGACTCAGAAC 59.587 50.000 0.00 0.00 32.39 3.01
2361 7132 1.895798 AGTCCTGCAATTCGACTCAGA 59.104 47.619 0.00 0.00 31.15 3.27
2362 7133 1.998315 CAGTCCTGCAATTCGACTCAG 59.002 52.381 3.20 0.00 34.65 3.35
2373 7144 2.483013 GCGGTCATATTACAGTCCTGCA 60.483 50.000 0.00 0.00 0.00 4.41
2393 7164 1.871039 TCACTAACGGAAGCAAGTTGC 59.129 47.619 20.44 20.44 45.46 4.17
2395 7167 4.084013 CGATTTCACTAACGGAAGCAAGTT 60.084 41.667 0.00 0.00 0.00 2.66
2404 7177 3.777465 TCTCTCCGATTTCACTAACGG 57.223 47.619 0.00 0.00 45.61 4.44
2452 7225 9.007811 AGATGATCATCGCAACGAAAGTGAAAT 62.008 37.037 26.09 3.58 42.95 2.17
2481 7260 7.166473 GCAAGAGATTGTGTTGTTCAAACTTAG 59.834 37.037 0.00 0.00 31.86 2.18
2527 7306 6.486253 AGATGATTACATGTGTTGTGTGTC 57.514 37.500 9.11 0.00 39.48 3.67
2589 7371 9.857656 TTCATGAGGATTCTAGCAAGATTTATT 57.142 29.630 0.00 0.00 0.00 1.40
2590 7372 9.857656 TTTCATGAGGATTCTAGCAAGATTTAT 57.142 29.630 0.00 0.00 0.00 1.40
2591 7373 9.685276 TTTTCATGAGGATTCTAGCAAGATTTA 57.315 29.630 0.00 0.00 0.00 1.40
2592 7374 8.585471 TTTTCATGAGGATTCTAGCAAGATTT 57.415 30.769 0.00 0.00 0.00 2.17
2593 7375 8.585471 TTTTTCATGAGGATTCTAGCAAGATT 57.415 30.769 0.00 0.00 0.00 2.40
2594 7376 8.763984 ATTTTTCATGAGGATTCTAGCAAGAT 57.236 30.769 0.00 0.00 0.00 2.40
2595 7377 9.857656 ATATTTTTCATGAGGATTCTAGCAAGA 57.142 29.630 0.00 0.00 0.00 3.02
2596 7378 9.894783 CATATTTTTCATGAGGATTCTAGCAAG 57.105 33.333 0.00 0.00 0.00 4.01
2597 7379 9.412460 ACATATTTTTCATGAGGATTCTAGCAA 57.588 29.630 0.00 0.00 0.00 3.91
2598 7380 8.985315 ACATATTTTTCATGAGGATTCTAGCA 57.015 30.769 0.00 0.00 0.00 3.49
2605 7387 8.355169 GCACACATACATATTTTTCATGAGGAT 58.645 33.333 0.00 0.00 0.00 3.24
2606 7388 7.338957 TGCACACATACATATTTTTCATGAGGA 59.661 33.333 0.00 0.00 0.00 3.71
2607 7389 7.482474 TGCACACATACATATTTTTCATGAGG 58.518 34.615 0.00 0.00 0.00 3.86
2608 7390 8.964150 CATGCACACATACATATTTTTCATGAG 58.036 33.333 0.00 0.00 33.67 2.90
2609 7391 7.435784 GCATGCACACATACATATTTTTCATGA 59.564 33.333 14.21 0.00 33.67 3.07
2610 7392 7.222999 TGCATGCACACATACATATTTTTCATG 59.777 33.333 18.46 0.00 33.67 3.07
2611 7393 7.266400 TGCATGCACACATACATATTTTTCAT 58.734 30.769 18.46 0.00 33.67 2.57
2612 7394 6.628185 TGCATGCACACATACATATTTTTCA 58.372 32.000 18.46 0.00 33.67 2.69
2613 7395 7.560700 CATGCATGCACACATACATATTTTTC 58.439 34.615 25.37 0.00 38.05 2.29
2614 7396 7.471657 CATGCATGCACACATACATATTTTT 57.528 32.000 25.37 0.00 38.05 1.94
2709 7734 1.654954 CGGTAGTAGCTCCTGCACGT 61.655 60.000 0.00 0.00 42.74 4.49
2738 7763 4.182433 TTCACCCCACACTGCGCA 62.182 61.111 10.98 10.98 0.00 6.09
2743 7768 0.109342 CAGCTTCTTCACCCCACACT 59.891 55.000 0.00 0.00 0.00 3.55
2795 7820 2.280552 GCCCTCGTAGGTGGTGACA 61.281 63.158 3.09 0.00 31.93 3.58
2853 7878 2.487086 CGGTGGCCATTATCATCCTTGA 60.487 50.000 9.72 0.00 36.00 3.02
2856 7881 0.401738 CCGGTGGCCATTATCATCCT 59.598 55.000 9.72 0.00 0.00 3.24
2876 7901 2.202623 GAGTAGGCAGTGTCGGCG 60.203 66.667 0.00 0.00 36.37 6.46
2936 7961 2.278596 CCATAGACGTCGGCACCG 60.279 66.667 10.46 1.73 41.35 4.94
2951 7976 2.045536 TGTATGCACATGCGCCCA 60.046 55.556 4.18 0.00 45.83 5.36
2987 8012 4.662961 CTGTGTGCCAGCGACGGA 62.663 66.667 0.00 0.00 33.59 4.69
2994 8019 0.320683 TCCGACAATCTGTGTGCCAG 60.321 55.000 0.00 0.00 41.96 4.85
3003 8028 0.815734 CCACCGTACTCCGACAATCT 59.184 55.000 0.00 0.00 39.56 2.40
3027 8052 2.325857 GCGATCGGCATGCACTTC 59.674 61.111 21.36 11.15 42.87 3.01
3029 8054 3.687321 AAGGCGATCGGCATGCACT 62.687 57.895 38.28 17.90 46.16 4.40
3030 8055 3.173390 GAAGGCGATCGGCATGCAC 62.173 63.158 38.28 21.62 46.16 4.57
3032 8057 3.654020 GGAAGGCGATCGGCATGC 61.654 66.667 38.28 30.03 46.16 4.06
3044 8069 4.096003 ACCACGGCATCGGGAAGG 62.096 66.667 0.00 0.00 43.65 3.46
3055 8080 0.532573 AGACTGATAGTGCACCACGG 59.467 55.000 14.63 12.48 39.64 4.94
3058 8083 1.757118 GCCTAGACTGATAGTGCACCA 59.243 52.381 14.63 0.00 0.00 4.17
3060 8085 3.068732 TGATGCCTAGACTGATAGTGCAC 59.931 47.826 9.40 9.40 34.20 4.57
3063 8088 9.149225 GAATTAATGATGCCTAGACTGATAGTG 57.851 37.037 0.00 0.00 0.00 2.74
3064 8089 8.874156 TGAATTAATGATGCCTAGACTGATAGT 58.126 33.333 0.00 0.00 0.00 2.12
3068 8093 7.129457 ACTGAATTAATGATGCCTAGACTGA 57.871 36.000 0.00 0.00 0.00 3.41
3072 8097 8.928448 AGAGTTACTGAATTAATGATGCCTAGA 58.072 33.333 0.00 0.00 0.00 2.43
3091 8116 4.897025 ACTCCTACATACGCAGAGTTAC 57.103 45.455 0.00 0.00 34.17 2.50
3093 8118 4.267536 TGTACTCCTACATACGCAGAGTT 58.732 43.478 0.00 0.00 38.65 3.01
3097 8122 9.327628 ACTATATATGTACTCCTACATACGCAG 57.672 37.037 3.28 3.99 44.90 5.18
3108 8133 8.132362 GCTGCAGATGTACTATATATGTACTCC 58.868 40.741 20.43 12.88 40.44 3.85
3109 8134 8.898761 AGCTGCAGATGTACTATATATGTACTC 58.101 37.037 20.43 14.57 40.44 2.59
3110 8135 8.815565 AGCTGCAGATGTACTATATATGTACT 57.184 34.615 20.43 0.00 40.44 2.73
3111 8136 9.509855 GAAGCTGCAGATGTACTATATATGTAC 57.490 37.037 20.43 13.90 40.27 2.90
3112 8137 8.398665 CGAAGCTGCAGATGTACTATATATGTA 58.601 37.037 20.43 0.00 0.00 2.29
3113 8138 7.254137 CGAAGCTGCAGATGTACTATATATGT 58.746 38.462 20.43 0.00 0.00 2.29
3114 8139 6.694844 CCGAAGCTGCAGATGTACTATATATG 59.305 42.308 20.43 0.00 0.00 1.78
3115 8140 6.378564 ACCGAAGCTGCAGATGTACTATATAT 59.621 38.462 20.43 0.00 0.00 0.86
3116 8141 5.710567 ACCGAAGCTGCAGATGTACTATATA 59.289 40.000 20.43 0.00 0.00 0.86
3117 8142 4.524714 ACCGAAGCTGCAGATGTACTATAT 59.475 41.667 20.43 0.00 0.00 0.86
3118 8143 3.889538 ACCGAAGCTGCAGATGTACTATA 59.110 43.478 20.43 0.00 0.00 1.31
3122 8147 1.726853 AACCGAAGCTGCAGATGTAC 58.273 50.000 20.43 5.94 0.00 2.90
3125 8150 0.169672 CCAAACCGAAGCTGCAGATG 59.830 55.000 20.43 1.25 0.00 2.90
3127 8152 2.260869 GCCAAACCGAAGCTGCAGA 61.261 57.895 20.43 0.00 0.00 4.26
3129 8154 3.294493 GGCCAAACCGAAGCTGCA 61.294 61.111 0.00 0.00 0.00 4.41
3130 8155 1.241315 TAAGGCCAAACCGAAGCTGC 61.241 55.000 5.01 0.00 46.52 5.25
3131 8156 1.243902 TTAAGGCCAAACCGAAGCTG 58.756 50.000 5.01 0.00 46.52 4.24
3138 8163 3.181490 CCTCGCTAAATTAAGGCCAAACC 60.181 47.826 5.01 0.00 39.61 3.27
3203 8229 1.611977 TGTTACCCTGTGTCTCTGTCG 59.388 52.381 0.00 0.00 0.00 4.35
3207 8233 2.400467 ACCTGTTACCCTGTGTCTCT 57.600 50.000 0.00 0.00 0.00 3.10
3208 8234 2.895404 TGTACCTGTTACCCTGTGTCTC 59.105 50.000 0.00 0.00 0.00 3.36
3237 8263 2.034939 TCCAGAACAAATGCAGCACAAG 59.965 45.455 0.00 0.00 0.00 3.16
3246 8272 8.542497 AATGATTTCAACATCCAGAACAAATG 57.458 30.769 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.