Multiple sequence alignment - TraesCS1A01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G419900 chr1A 100.000 2833 0 0 1 2833 576560628 576563460 0.000000e+00 5232.0
1 TraesCS1A01G419900 chr1A 86.922 1277 99 32 866 2092 576492001 576490743 0.000000e+00 1371.0
2 TraesCS1A01G419900 chr1A 86.842 532 45 11 341 856 576492567 576492045 3.170000e-159 571.0
3 TraesCS1A01G419900 chr1A 83.077 130 11 5 74 201 97156256 97156376 1.070000e-19 108.0
4 TraesCS1A01G419900 chr1B 85.286 1767 163 45 233 1967 668185674 668187375 0.000000e+00 1733.0
5 TraesCS1A01G419900 chr1B 88.539 1047 54 26 974 1967 668200043 668201076 0.000000e+00 1208.0
6 TraesCS1A01G419900 chr1B 86.267 1034 70 26 989 1967 668182985 668184001 0.000000e+00 1057.0
7 TraesCS1A01G419900 chr1B 82.511 709 92 22 1268 1967 668429802 668429117 6.760000e-166 593.0
8 TraesCS1A01G419900 chr1B 86.085 424 39 14 339 747 668182285 668182703 3.350000e-119 438.0
9 TraesCS1A01G419900 chr1B 85.091 275 36 4 1663 1935 668545152 668544881 2.780000e-70 276.0
10 TraesCS1A01G419900 chr1B 89.545 220 14 3 736 951 668182768 668182982 1.290000e-68 270.0
11 TraesCS1A01G419900 chr1B 83.618 293 34 8 341 624 668199527 668199814 2.160000e-66 263.0
12 TraesCS1A01G419900 chr1B 76.978 556 61 41 999 1503 668540328 668539789 3.620000e-64 255.0
13 TraesCS1A01G419900 chr1B 90.286 175 10 5 1909 2082 668184262 668184430 3.670000e-54 222.0
14 TraesCS1A01G419900 chr1B 90.244 164 15 1 1804 1967 668290220 668290058 2.210000e-51 213.0
15 TraesCS1A01G419900 chr1B 88.889 117 11 2 861 976 668199857 668199972 2.940000e-30 143.0
16 TraesCS1A01G419900 chr1B 97.368 38 1 0 2079 2116 668184457 668184494 6.550000e-07 65.8
17 TraesCS1A01G419900 chr1D 87.630 1059 49 27 974 1967 478755723 478754682 0.000000e+00 1155.0
18 TraesCS1A01G419900 chr1D 92.117 685 36 7 547 1227 480075264 480075934 0.000000e+00 950.0
19 TraesCS1A01G419900 chr1D 84.570 1011 91 9 974 1931 480155560 480156558 0.000000e+00 942.0
20 TraesCS1A01G419900 chr1D 93.500 400 19 2 1379 1771 480076418 480076817 3.140000e-164 588.0
21 TraesCS1A01G419900 chr1D 92.500 320 22 1 232 549 480064006 480064325 9.250000e-125 457.0
22 TraesCS1A01G419900 chr1D 86.321 424 38 14 339 747 478756508 478756090 7.200000e-121 444.0
23 TraesCS1A01G419900 chr1D 91.638 287 12 6 867 1143 480063555 480063839 1.230000e-103 387.0
24 TraesCS1A01G419900 chr1D 96.482 199 6 1 1769 1967 480099280 480099477 7.570000e-86 327.0
25 TraesCS1A01G419900 chr1D 88.934 244 17 4 738 976 478756032 478755794 2.760000e-75 292.0
26 TraesCS1A01G419900 chr1D 82.661 248 13 12 733 976 480155267 480155488 2.880000e-45 193.0
27 TraesCS1A01G419900 chr1D 86.400 125 13 3 368 492 480063377 480063497 1.770000e-27 134.0
28 TraesCS1A01G419900 chr1D 83.969 131 9 7 847 976 478756709 478756590 6.410000e-22 115.0
29 TraesCS1A01G419900 chr1D 96.825 63 1 1 546 608 480063496 480063557 1.390000e-18 104.0
30 TraesCS1A01G419900 chr1D 80.292 137 17 5 51 185 255060568 255060440 8.360000e-16 95.3
31 TraesCS1A01G419900 chr1D 100.000 39 0 0 1230 1268 480075968 480076006 3.910000e-09 73.1
32 TraesCS1A01G419900 chrUn 81.308 214 32 4 2453 2661 94125032 94125242 1.750000e-37 167.0
33 TraesCS1A01G419900 chr6D 82.857 175 18 6 33 205 13586480 13586644 2.270000e-31 147.0
34 TraesCS1A01G419900 chr5B 81.935 155 17 6 52 203 504682636 504682782 1.380000e-23 121.0
35 TraesCS1A01G419900 chr5B 97.143 35 0 1 576 610 596812028 596811995 1.100000e-04 58.4
36 TraesCS1A01G419900 chr5B 100.000 29 0 0 582 610 680544589 680544561 1.000000e-03 54.7
37 TraesCS1A01G419900 chr5A 75.704 284 38 21 51 320 436635376 436635642 2.310000e-21 113.0
38 TraesCS1A01G419900 chr5A 77.027 148 23 10 84 229 599260942 599260804 1.090000e-09 75.0
39 TraesCS1A01G419900 chr2D 75.503 298 35 24 36 320 569121997 569121725 8.300000e-21 111.0
40 TraesCS1A01G419900 chr2D 86.250 80 7 3 232 308 569154012 569153934 1.810000e-12 84.2
41 TraesCS1A01G419900 chr2D 100.000 33 0 0 264 296 634275611 634275643 8.470000e-06 62.1
42 TraesCS1A01G419900 chr3D 90.361 83 6 2 36 117 358601470 358601389 1.070000e-19 108.0
43 TraesCS1A01G419900 chr7D 86.408 103 7 6 36 137 571723871 571723967 3.860000e-19 106.0
44 TraesCS1A01G419900 chr3B 78.495 186 18 16 47 222 190484881 190484708 4.990000e-18 102.0
45 TraesCS1A01G419900 chr5D 87.500 88 8 3 29 114 437983128 437983214 6.460000e-17 99.0
46 TraesCS1A01G419900 chr5D 79.739 153 15 9 2694 2832 350384153 350384303 2.320000e-16 97.1
47 TraesCS1A01G419900 chr7A 77.922 154 20 8 36 187 634397608 634397467 1.810000e-12 84.2
48 TraesCS1A01G419900 chr6B 97.500 40 1 0 281 320 237408945 237408906 5.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G419900 chr1A 576560628 576563460 2832 False 5232.000000 5232 100.000000 1 2833 1 chr1A.!!$F2 2832
1 TraesCS1A01G419900 chr1A 576490743 576492567 1824 True 971.000000 1371 86.882000 341 2092 2 chr1A.!!$R1 1751
2 TraesCS1A01G419900 chr1B 668182285 668187375 5090 False 630.966667 1733 89.139500 233 2116 6 chr1B.!!$F1 1883
3 TraesCS1A01G419900 chr1B 668429117 668429802 685 True 593.000000 593 82.511000 1268 1967 1 chr1B.!!$R2 699
4 TraesCS1A01G419900 chr1B 668199527 668201076 1549 False 538.000000 1208 87.015333 341 1967 3 chr1B.!!$F2 1626
5 TraesCS1A01G419900 chr1B 668539789 668540328 539 True 255.000000 255 76.978000 999 1503 1 chr1B.!!$R3 504
6 TraesCS1A01G419900 chr1D 480155267 480156558 1291 False 567.500000 942 83.615500 733 1931 2 chr1D.!!$F4 1198
7 TraesCS1A01G419900 chr1D 480075264 480076817 1553 False 537.033333 950 95.205667 547 1771 3 chr1D.!!$F3 1224
8 TraesCS1A01G419900 chr1D 478754682 478756709 2027 True 501.500000 1155 86.713500 339 1967 4 chr1D.!!$R2 1628
9 TraesCS1A01G419900 chr1D 480063377 480064325 948 False 270.500000 457 91.840750 232 1143 4 chr1D.!!$F2 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1147 1.304713 AGCGACGGAGGAACCCTAA 60.305 57.895 0.0 0.0 31.76 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2684 4985 0.036294 AAACTGACCCTAAGCCTCGC 60.036 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.743057 AACGTTGTTTTTCATATTCTTGATTGA 57.257 25.926 0.00 0.00 0.00 2.57
55 56 9.743057 ACGTTGTTTTTCATATTCTTGATTGAA 57.257 25.926 0.00 0.00 0.00 2.69
135 136 9.868277 ACACACTTCTTGATTAACATTTTTCAA 57.132 25.926 0.00 0.00 0.00 2.69
177 178 9.442047 TTTTTGAATACATGGTCAACAGTTTTT 57.558 25.926 7.90 0.00 33.58 1.94
178 179 8.641499 TTTGAATACATGGTCAACAGTTTTTC 57.359 30.769 7.90 0.00 33.58 2.29
179 180 7.581213 TGAATACATGGTCAACAGTTTTTCT 57.419 32.000 0.00 0.00 0.00 2.52
181 182 9.295825 TGAATACATGGTCAACAGTTTTTCTAT 57.704 29.630 0.00 0.00 0.00 1.98
186 187 8.514594 ACATGGTCAACAGTTTTTCTATACATG 58.485 33.333 0.00 0.00 36.48 3.21
188 189 8.458573 TGGTCAACAGTTTTTCTATACATGTT 57.541 30.769 2.30 0.00 0.00 2.71
189 190 8.908903 TGGTCAACAGTTTTTCTATACATGTTT 58.091 29.630 2.30 0.00 0.00 2.83
255 256 7.778470 TTTTTCAAATGCTTGGTTAACGATT 57.222 28.000 0.00 0.00 33.01 3.34
256 257 7.778470 TTTTCAAATGCTTGGTTAACGATTT 57.222 28.000 0.00 0.00 33.01 2.17
257 258 7.778470 TTTCAAATGCTTGGTTAACGATTTT 57.222 28.000 0.00 0.00 33.01 1.82
258 259 7.778470 TTCAAATGCTTGGTTAACGATTTTT 57.222 28.000 0.00 0.00 33.01 1.94
364 367 3.674753 GGCATGTGCATAGTGTTCAAAAC 59.325 43.478 7.36 0.00 44.36 2.43
493 500 9.743057 CCTATAATGAATCTAGATCGACCATTC 57.257 37.037 17.96 8.62 0.00 2.67
844 1020 4.214332 GGATGACGATGGATAAAAGAAGGC 59.786 45.833 0.00 0.00 0.00 4.35
934 1147 1.304713 AGCGACGGAGGAACCCTAA 60.305 57.895 0.00 0.00 31.76 2.69
945 1166 4.223255 GGAGGAACCCTAACCTATATCAGC 59.777 50.000 0.00 0.00 36.57 4.26
984 1279 2.303175 GCCCCAAATTCCGTGCTATTA 58.697 47.619 0.00 0.00 0.00 0.98
1108 1403 3.775654 CGAGGCTGTCCCAGGTCC 61.776 72.222 0.00 0.00 35.39 4.46
1190 1544 4.339247 CCGGCTGACCAATTTCATATCTTT 59.661 41.667 0.00 0.00 34.57 2.52
1191 1545 5.163519 CCGGCTGACCAATTTCATATCTTTT 60.164 40.000 0.00 0.00 34.57 2.27
1192 1546 6.332630 CGGCTGACCAATTTCATATCTTTTT 58.667 36.000 0.00 0.00 34.57 1.94
1193 1547 6.473455 CGGCTGACCAATTTCATATCTTTTTC 59.527 38.462 0.00 0.00 34.57 2.29
1194 1548 7.322664 GGCTGACCAATTTCATATCTTTTTCA 58.677 34.615 0.00 0.00 35.26 2.69
1195 1549 7.490402 GGCTGACCAATTTCATATCTTTTTCAG 59.510 37.037 0.00 0.00 35.26 3.02
1215 1575 4.104776 CAGTTTTGTGCGATTGTTTCTGT 58.895 39.130 0.00 0.00 0.00 3.41
1228 1619 5.881923 TTGTTTCTGTAACCTGGACTAGT 57.118 39.130 0.00 0.00 35.81 2.57
1287 1706 5.540911 TCCAAAATTGAATCCAGTTCTTGC 58.459 37.500 0.00 0.00 37.72 4.01
1310 1735 6.816140 TGCGTTTCCTCAAGAAAAAGAAAAAT 59.184 30.769 0.00 0.00 45.93 1.82
1364 1801 4.682778 AATCAATCCGAGGACCGAATAA 57.317 40.909 0.00 0.00 41.76 1.40
1383 2097 8.179615 CCGAATAACAAAACCCTGTATCTAAAC 58.820 37.037 0.00 0.00 0.00 2.01
1443 2161 5.049474 TCCGTTGCATGATCATTTATGTAGC 60.049 40.000 5.16 5.22 0.00 3.58
1485 2213 1.228644 TGCAAAGCAGGGCTGTGAT 60.229 52.632 12.41 0.00 45.99 3.06
1486 2214 0.828762 TGCAAAGCAGGGCTGTGATT 60.829 50.000 12.41 0.00 45.99 2.57
1487 2215 0.389426 GCAAAGCAGGGCTGTGATTG 60.389 55.000 12.41 4.53 45.99 2.67
1488 2216 0.963962 CAAAGCAGGGCTGTGATTGT 59.036 50.000 2.16 0.00 45.99 2.71
1489 2217 0.963962 AAAGCAGGGCTGTGATTGTG 59.036 50.000 0.00 0.00 39.62 3.33
1490 2218 0.111061 AAGCAGGGCTGTGATTGTGA 59.889 50.000 0.00 0.00 39.62 3.58
1607 2335 2.368439 GGCAGGCAAACATATCAGTCA 58.632 47.619 0.00 0.00 0.00 3.41
1726 2458 7.824779 GGTTAACAAGTTATCTCATCTGAACCT 59.175 37.037 8.10 0.00 0.00 3.50
1829 2562 4.119363 ATGAGCATGGCCGCTGGT 62.119 61.111 10.14 9.72 44.01 4.00
1991 3045 2.550830 AATGCTAGTAATGGAGGCCG 57.449 50.000 0.00 0.00 0.00 6.13
2050 3104 3.592898 TCTTACACGCATCTGACATGT 57.407 42.857 0.00 0.00 0.00 3.21
2052 3106 4.672409 TCTTACACGCATCTGACATGTAG 58.328 43.478 0.00 0.00 0.00 2.74
2110 3194 1.875963 CTGTGGACGATTGTTGGCC 59.124 57.895 0.00 0.00 0.00 5.36
2116 3200 2.745884 CGATTGTTGGCCAGCGGA 60.746 61.111 15.43 6.52 0.00 5.54
2117 3201 2.753966 CGATTGTTGGCCAGCGGAG 61.754 63.158 15.43 2.57 0.00 4.63
2118 3202 2.361610 ATTGTTGGCCAGCGGAGG 60.362 61.111 15.43 0.00 0.00 4.30
2119 3203 3.944250 ATTGTTGGCCAGCGGAGGG 62.944 63.158 15.43 0.00 0.00 4.30
2121 3205 3.712907 GTTGGCCAGCGGAGGGTA 61.713 66.667 5.11 0.00 0.00 3.69
2123 3207 4.715130 TGGCCAGCGGAGGGTACT 62.715 66.667 0.00 0.00 0.00 2.73
2125 3209 2.499827 GGCCAGCGGAGGGTACTAG 61.500 68.421 0.00 0.00 0.00 2.57
2126 3210 3.130227 CCAGCGGAGGGTACTAGC 58.870 66.667 0.00 0.00 0.00 3.42
2127 3211 2.722487 CAGCGGAGGGTACTAGCG 59.278 66.667 0.00 0.00 36.11 4.26
2128 3212 2.518825 AGCGGAGGGTACTAGCGG 60.519 66.667 0.00 0.00 36.11 5.52
2129 3213 3.603671 GCGGAGGGTACTAGCGGG 61.604 72.222 0.00 0.00 0.00 6.13
2134 3218 0.179081 GAGGGTACTAGCGGGCAAAG 60.179 60.000 0.00 0.00 0.00 2.77
2135 3219 0.908180 AGGGTACTAGCGGGCAAAGT 60.908 55.000 0.00 4.47 0.00 2.66
2136 3220 0.743345 GGGTACTAGCGGGCAAAGTG 60.743 60.000 8.42 0.00 0.00 3.16
2137 3221 1.366854 GGTACTAGCGGGCAAAGTGC 61.367 60.000 8.42 7.16 44.08 4.40
2138 3222 1.447140 TACTAGCGGGCAAAGTGCG 60.447 57.895 8.42 0.00 46.21 5.34
2140 3224 2.740714 CTAGCGGGCAAAGTGCGAC 61.741 63.158 0.00 0.00 46.21 5.19
2144 3228 4.025401 GGGCAAAGTGCGACGTGG 62.025 66.667 0.00 0.00 46.21 4.94
2145 3229 2.970324 GGCAAAGTGCGACGTGGA 60.970 61.111 0.11 0.00 46.21 4.02
2147 3231 2.551270 CAAAGTGCGACGTGGAGC 59.449 61.111 0.11 0.55 0.00 4.70
2148 3232 2.108157 AAAGTGCGACGTGGAGCA 59.892 55.556 0.11 3.60 41.55 4.26
2149 3233 1.301716 AAAGTGCGACGTGGAGCAT 60.302 52.632 12.14 0.00 45.69 3.79
2150 3234 0.884704 AAAGTGCGACGTGGAGCATT 60.885 50.000 12.14 6.38 45.69 3.56
2151 3235 0.884704 AAGTGCGACGTGGAGCATTT 60.885 50.000 12.14 11.34 45.69 2.32
2152 3236 1.154413 GTGCGACGTGGAGCATTTG 60.154 57.895 12.14 0.00 45.69 2.32
2153 3237 2.202349 GCGACGTGGAGCATTTGC 60.202 61.111 0.11 0.00 42.49 3.68
2159 3243 1.503542 GTGGAGCATTTGCGTCCAG 59.496 57.895 18.09 0.00 43.63 3.86
2160 3244 2.533391 GTGGAGCATTTGCGTCCAGC 62.533 60.000 18.09 12.13 43.63 4.85
2172 3256 1.431488 CGTCCAGCGAACATCCATGG 61.431 60.000 4.97 4.97 44.77 3.66
2176 3260 0.677731 CAGCGAACATCCATGGGTGT 60.678 55.000 25.55 25.55 0.00 4.16
2177 3261 0.038166 AGCGAACATCCATGGGTGTT 59.962 50.000 37.81 37.81 40.97 3.32
2180 3264 1.663643 CGAACATCCATGGGTGTTACG 59.336 52.381 37.36 33.23 38.57 3.18
2181 3265 2.706890 GAACATCCATGGGTGTTACGT 58.293 47.619 37.36 20.54 38.57 3.57
2183 3267 3.149005 ACATCCATGGGTGTTACGTTT 57.851 42.857 25.55 0.00 0.00 3.60
2184 3268 3.492337 ACATCCATGGGTGTTACGTTTT 58.508 40.909 25.55 0.00 0.00 2.43
2185 3269 3.504520 ACATCCATGGGTGTTACGTTTTC 59.495 43.478 25.55 0.00 0.00 2.29
2194 3278 4.685824 GTGTTACGTTTTCACCATTTGC 57.314 40.909 0.00 0.00 0.00 3.68
2196 3280 4.439776 GTGTTACGTTTTCACCATTTGCTC 59.560 41.667 0.00 0.00 0.00 4.26
2198 3282 1.673920 ACGTTTTCACCATTTGCTCGT 59.326 42.857 0.00 0.00 0.00 4.18
2199 3283 2.043411 CGTTTTCACCATTTGCTCGTG 58.957 47.619 0.00 0.00 0.00 4.35
2200 3284 2.286713 CGTTTTCACCATTTGCTCGTGA 60.287 45.455 0.00 0.00 34.80 4.35
2201 3285 3.042887 GTTTTCACCATTTGCTCGTGAC 58.957 45.455 0.00 0.00 36.30 3.67
2203 3287 3.394674 TTCACCATTTGCTCGTGACTA 57.605 42.857 0.00 0.00 36.30 2.59
2205 3289 3.325870 TCACCATTTGCTCGTGACTAAG 58.674 45.455 0.00 0.00 31.74 2.18
2206 3290 2.076863 ACCATTTGCTCGTGACTAAGC 58.923 47.619 0.54 0.54 39.02 3.09
2207 3291 2.076100 CCATTTGCTCGTGACTAAGCA 58.924 47.619 5.57 5.57 46.31 3.91
2210 3294 2.827604 TGCTCGTGACTAAGCAAGC 58.172 52.632 7.00 0.00 45.09 4.01
2214 4426 2.677199 CTCGTGACTAAGCAAGCAAGA 58.323 47.619 0.00 0.00 0.00 3.02
2223 4436 8.642020 GTGACTAAGCAAGCAAGATTATTTTTG 58.358 33.333 0.00 0.00 0.00 2.44
2226 4439 9.578439 ACTAAGCAAGCAAGATTATTTTTGATC 57.422 29.630 0.00 0.00 0.00 2.92
2227 4440 9.577110 CTAAGCAAGCAAGATTATTTTTGATCA 57.423 29.630 0.00 0.00 0.00 2.92
2229 4442 8.420374 AGCAAGCAAGATTATTTTTGATCATG 57.580 30.769 0.00 0.00 0.00 3.07
2243 4456 8.909708 TTTTTGATCATGTTAATTCGGATGTC 57.090 30.769 0.00 0.00 0.00 3.06
2246 4459 6.581712 TGATCATGTTAATTCGGATGTCTGA 58.418 36.000 0.00 0.00 0.00 3.27
2247 4460 7.219322 TGATCATGTTAATTCGGATGTCTGAT 58.781 34.615 0.00 0.00 0.00 2.90
2248 4461 7.716560 TGATCATGTTAATTCGGATGTCTGATT 59.283 33.333 0.00 0.00 0.00 2.57
2249 4462 7.864108 TCATGTTAATTCGGATGTCTGATTT 57.136 32.000 0.00 4.85 0.00 2.17
2250 4463 7.919690 TCATGTTAATTCGGATGTCTGATTTC 58.080 34.615 0.00 0.00 0.00 2.17
2252 4465 7.072177 TGTTAATTCGGATGTCTGATTTCAC 57.928 36.000 3.08 4.06 0.00 3.18
2253 4466 6.093495 TGTTAATTCGGATGTCTGATTTCACC 59.907 38.462 3.08 0.00 0.00 4.02
2256 4469 1.667724 CGGATGTCTGATTTCACCAGC 59.332 52.381 0.00 0.00 0.00 4.85
2267 4537 2.728690 TTCACCAGCAAATGCACATC 57.271 45.000 8.28 0.00 45.16 3.06
2268 4538 0.522626 TCACCAGCAAATGCACATCG 59.477 50.000 8.28 0.00 45.16 3.84
2269 4539 0.522626 CACCAGCAAATGCACATCGA 59.477 50.000 8.28 0.00 45.16 3.59
2270 4540 1.133598 CACCAGCAAATGCACATCGAT 59.866 47.619 8.28 0.00 45.16 3.59
2271 4541 1.133598 ACCAGCAAATGCACATCGATG 59.866 47.619 23.68 23.68 45.16 3.84
2272 4542 1.133598 CCAGCAAATGCACATCGATGT 59.866 47.619 25.18 25.18 45.16 3.06
2288 4589 7.739295 ACATCGATGTGTAAACTGATAAACAC 58.261 34.615 29.49 0.00 40.03 3.32
2289 4590 7.602644 ACATCGATGTGTAAACTGATAAACACT 59.397 33.333 29.49 0.00 42.12 3.55
2292 4593 9.647797 TCGATGTGTAAACTGATAAACACTAAT 57.352 29.630 6.08 0.00 42.12 1.73
2295 4596 9.959721 ATGTGTAAACTGATAAACACTAATCCT 57.040 29.630 6.08 0.00 42.12 3.24
2303 4604 7.553044 ACTGATAAACACTAATCCTAAACAGGC 59.447 37.037 0.00 0.00 0.00 4.85
2304 4605 6.537301 TGATAAACACTAATCCTAAACAGGCG 59.463 38.462 0.00 0.00 0.00 5.52
2305 4606 3.975168 ACACTAATCCTAAACAGGCGT 57.025 42.857 0.00 0.00 0.00 5.68
2306 4607 4.281898 ACACTAATCCTAAACAGGCGTT 57.718 40.909 0.00 0.00 36.73 4.84
2307 4608 4.648651 ACACTAATCCTAAACAGGCGTTT 58.351 39.130 11.10 11.10 46.94 3.60
2308 4609 4.694037 ACACTAATCCTAAACAGGCGTTTC 59.306 41.667 9.97 0.00 44.27 2.78
2309 4610 3.930848 ACTAATCCTAAACAGGCGTTTCG 59.069 43.478 9.97 5.47 44.27 3.46
2311 4612 1.787012 TCCTAAACAGGCGTTTCGTC 58.213 50.000 9.97 0.00 44.27 4.20
2312 4613 1.068895 TCCTAAACAGGCGTTTCGTCA 59.931 47.619 9.97 0.00 44.27 4.35
2313 4614 2.073816 CCTAAACAGGCGTTTCGTCAT 58.926 47.619 9.97 0.00 44.27 3.06
2314 4615 2.482721 CCTAAACAGGCGTTTCGTCATT 59.517 45.455 9.97 0.00 44.27 2.57
2315 4616 3.058501 CCTAAACAGGCGTTTCGTCATTT 60.059 43.478 9.97 0.00 44.27 2.32
2316 4617 3.430333 AAACAGGCGTTTCGTCATTTT 57.570 38.095 2.41 0.00 41.60 1.82
2317 4618 3.430333 AACAGGCGTTTCGTCATTTTT 57.570 38.095 0.00 0.00 32.13 1.94
2318 4619 4.555348 AACAGGCGTTTCGTCATTTTTA 57.445 36.364 0.00 0.00 32.13 1.52
2319 4620 3.880610 ACAGGCGTTTCGTCATTTTTAC 58.119 40.909 0.00 0.00 32.13 2.01
2321 4622 3.662186 CAGGCGTTTCGTCATTTTTACAC 59.338 43.478 0.00 0.00 32.13 2.90
2323 4624 2.086399 GCGTTTCGTCATTTTTACACGC 59.914 45.455 0.00 0.00 44.15 5.34
2324 4625 2.648431 CGTTTCGTCATTTTTACACGCC 59.352 45.455 0.00 0.00 33.46 5.68
2325 4626 3.619729 GTTTCGTCATTTTTACACGCCA 58.380 40.909 0.00 0.00 33.46 5.69
2326 4627 3.529634 TTCGTCATTTTTACACGCCAG 57.470 42.857 0.00 0.00 33.46 4.85
2327 4628 1.801771 TCGTCATTTTTACACGCCAGG 59.198 47.619 0.00 0.00 33.46 4.45
2329 4630 2.224549 CGTCATTTTTACACGCCAGGAA 59.775 45.455 0.00 0.00 0.00 3.36
2334 4635 1.444836 TTTACACGCCAGGAAATCGG 58.555 50.000 0.00 0.00 0.00 4.18
2335 4636 0.609151 TTACACGCCAGGAAATCGGA 59.391 50.000 0.00 0.00 0.00 4.55
2336 4637 0.174845 TACACGCCAGGAAATCGGAG 59.825 55.000 0.00 0.00 0.00 4.63
2337 4638 2.125106 ACGCCAGGAAATCGGAGC 60.125 61.111 0.00 0.00 0.00 4.70
2338 4639 3.264897 CGCCAGGAAATCGGAGCG 61.265 66.667 0.00 0.00 37.39 5.03
2339 4640 2.897350 GCCAGGAAATCGGAGCGG 60.897 66.667 0.00 0.00 0.00 5.52
2340 4641 2.897350 CCAGGAAATCGGAGCGGC 60.897 66.667 0.00 0.00 0.00 6.53
2341 4642 2.187946 CAGGAAATCGGAGCGGCT 59.812 61.111 0.00 0.00 0.00 5.52
2342 4643 1.450312 CAGGAAATCGGAGCGGCTT 60.450 57.895 2.97 0.00 0.00 4.35
2344 4645 0.105039 AGGAAATCGGAGCGGCTTAG 59.895 55.000 2.97 1.22 0.00 2.18
2345 4646 0.880718 GGAAATCGGAGCGGCTTAGG 60.881 60.000 2.97 0.00 0.00 2.69
2346 4647 0.179081 GAAATCGGAGCGGCTTAGGT 60.179 55.000 2.97 0.00 0.00 3.08
2347 4648 1.068127 GAAATCGGAGCGGCTTAGGTA 59.932 52.381 2.97 0.00 0.00 3.08
2348 4649 0.388294 AATCGGAGCGGCTTAGGTAC 59.612 55.000 2.97 0.00 0.00 3.34
2349 4650 0.754217 ATCGGAGCGGCTTAGGTACA 60.754 55.000 2.97 0.00 0.00 2.90
2350 4651 0.754217 TCGGAGCGGCTTAGGTACAT 60.754 55.000 2.97 0.00 0.00 2.29
2351 4652 0.597637 CGGAGCGGCTTAGGTACATG 60.598 60.000 2.97 0.00 0.00 3.21
2354 4655 0.462047 AGCGGCTTAGGTACATGCAC 60.462 55.000 0.00 0.00 0.00 4.57
2355 4656 1.762222 GCGGCTTAGGTACATGCACG 61.762 60.000 0.00 0.00 0.00 5.34
2356 4657 0.459585 CGGCTTAGGTACATGCACGT 60.460 55.000 0.00 0.00 0.00 4.49
2357 4658 1.006832 GGCTTAGGTACATGCACGTG 58.993 55.000 12.28 12.28 0.00 4.49
2358 4659 0.373716 GCTTAGGTACATGCACGTGC 59.626 55.000 33.11 33.11 42.50 5.34
2359 4660 2.007049 GCTTAGGTACATGCACGTGCT 61.007 52.381 37.59 22.54 42.66 4.40
2362 4663 2.691409 AGGTACATGCACGTGCTTAT 57.309 45.000 37.59 25.37 42.66 1.73
2363 4664 2.279741 AGGTACATGCACGTGCTTATG 58.720 47.619 37.59 32.89 42.66 1.90
2365 4666 2.418628 GGTACATGCACGTGCTTATGTT 59.581 45.455 36.30 25.04 38.25 2.71
2366 4667 2.617250 ACATGCACGTGCTTATGTTG 57.383 45.000 37.59 25.27 42.66 3.33
2368 4669 2.551887 ACATGCACGTGCTTATGTTGAA 59.448 40.909 37.59 17.38 42.66 2.69
2369 4670 3.191162 ACATGCACGTGCTTATGTTGAAT 59.809 39.130 37.59 18.86 42.66 2.57
2370 4671 3.469899 TGCACGTGCTTATGTTGAATC 57.530 42.857 37.59 8.00 42.66 2.52
2372 4673 3.120234 TGCACGTGCTTATGTTGAATCAG 60.120 43.478 37.59 0.00 42.66 2.90
2373 4674 3.125146 GCACGTGCTTATGTTGAATCAGA 59.875 43.478 32.55 0.00 38.21 3.27
2375 4676 5.006649 GCACGTGCTTATGTTGAATCAGATA 59.993 40.000 32.55 0.00 38.21 1.98
2376 4677 6.643845 CACGTGCTTATGTTGAATCAGATAG 58.356 40.000 0.82 0.00 0.00 2.08
2377 4678 6.476706 CACGTGCTTATGTTGAATCAGATAGA 59.523 38.462 0.82 0.00 0.00 1.98
2379 4680 7.383572 ACGTGCTTATGTTGAATCAGATAGATC 59.616 37.037 0.00 0.00 35.39 2.75
2380 4681 7.383300 CGTGCTTATGTTGAATCAGATAGATCA 59.617 37.037 0.00 0.00 35.39 2.92
2382 4683 9.269453 TGCTTATGTTGAATCAGATAGATCAAG 57.731 33.333 0.00 0.00 35.39 3.02
2383 4684 8.229137 GCTTATGTTGAATCAGATAGATCAAGC 58.771 37.037 0.00 0.00 35.39 4.01
2385 4686 7.731882 ATGTTGAATCAGATAGATCAAGCAG 57.268 36.000 0.00 0.00 35.39 4.24
2387 4688 7.108194 TGTTGAATCAGATAGATCAAGCAGTT 58.892 34.615 0.00 0.00 35.39 3.16
2388 4689 7.609146 TGTTGAATCAGATAGATCAAGCAGTTT 59.391 33.333 0.00 0.00 35.39 2.66
2389 4690 8.457261 GTTGAATCAGATAGATCAAGCAGTTTT 58.543 33.333 0.00 0.00 35.39 2.43
2390 4691 7.982224 TGAATCAGATAGATCAAGCAGTTTTG 58.018 34.615 0.00 0.00 35.39 2.44
2392 4693 6.974932 TCAGATAGATCAAGCAGTTTTGTC 57.025 37.500 0.00 0.00 0.00 3.18
2393 4694 5.877012 TCAGATAGATCAAGCAGTTTTGTCC 59.123 40.000 0.00 0.00 0.00 4.02
2394 4695 5.879223 CAGATAGATCAAGCAGTTTTGTCCT 59.121 40.000 0.00 0.00 0.00 3.85
2395 4696 6.373774 CAGATAGATCAAGCAGTTTTGTCCTT 59.626 38.462 0.00 0.00 0.00 3.36
2396 4697 4.843220 AGATCAAGCAGTTTTGTCCTTG 57.157 40.909 0.00 0.00 0.00 3.61
2398 4699 5.075493 AGATCAAGCAGTTTTGTCCTTGAT 58.925 37.500 12.85 12.85 42.10 2.57
2399 4700 5.537674 AGATCAAGCAGTTTTGTCCTTGATT 59.462 36.000 13.84 4.53 40.30 2.57
2400 4701 6.716628 AGATCAAGCAGTTTTGTCCTTGATTA 59.283 34.615 13.84 0.00 40.30 1.75
2401 4702 6.707440 TCAAGCAGTTTTGTCCTTGATTAA 57.293 33.333 0.00 0.00 0.00 1.40
2402 4703 7.288810 TCAAGCAGTTTTGTCCTTGATTAAT 57.711 32.000 0.00 0.00 0.00 1.40
2403 4704 7.370383 TCAAGCAGTTTTGTCCTTGATTAATC 58.630 34.615 8.60 8.60 0.00 1.75
2404 4705 6.899393 AGCAGTTTTGTCCTTGATTAATCA 57.101 33.333 14.23 14.23 34.44 2.57
2405 4706 7.472334 AGCAGTTTTGTCCTTGATTAATCAT 57.528 32.000 18.61 0.00 36.56 2.45
2406 4707 7.318141 AGCAGTTTTGTCCTTGATTAATCATG 58.682 34.615 18.61 19.14 36.56 3.07
2407 4708 6.035327 GCAGTTTTGTCCTTGATTAATCATGC 59.965 38.462 18.61 16.02 36.56 4.06
2408 4709 6.532657 CAGTTTTGTCCTTGATTAATCATGCC 59.467 38.462 18.61 13.37 36.56 4.40
2409 4710 6.211184 AGTTTTGTCCTTGATTAATCATGCCA 59.789 34.615 18.61 15.37 36.56 4.92
2410 4711 5.581126 TTGTCCTTGATTAATCATGCCAC 57.419 39.130 18.61 17.45 36.56 5.01
2411 4712 3.627123 TGTCCTTGATTAATCATGCCACG 59.373 43.478 18.61 8.52 36.56 4.94
2413 4714 2.287788 CCTTGATTAATCATGCCACGGC 60.288 50.000 18.61 0.00 36.56 5.68
2414 4715 0.943673 TGATTAATCATGCCACGGCG 59.056 50.000 14.23 4.80 45.51 6.46
2416 4717 0.944386 ATTAATCATGCCACGGCGTC 59.056 50.000 10.85 0.00 45.51 5.19
2417 4718 0.391793 TTAATCATGCCACGGCGTCA 60.392 50.000 10.85 6.75 45.51 4.35
2418 4719 0.179059 TAATCATGCCACGGCGTCAT 60.179 50.000 10.85 9.26 45.51 3.06
2419 4720 1.717791 AATCATGCCACGGCGTCATG 61.718 55.000 26.60 26.60 45.51 3.07
2420 4721 2.874648 ATCATGCCACGGCGTCATGT 62.875 55.000 29.19 19.13 45.51 3.21
2422 4723 2.398554 ATGCCACGGCGTCATGTTC 61.399 57.895 10.85 0.00 45.51 3.18
2423 4724 3.047280 GCCACGGCGTCATGTTCA 61.047 61.111 10.85 0.00 0.00 3.18
2425 4726 1.425031 CCACGGCGTCATGTTCATG 59.575 57.895 10.85 6.46 0.00 3.07
2426 4727 1.226101 CACGGCGTCATGTTCATGC 60.226 57.895 10.85 3.35 0.00 4.06
2428 4729 1.026182 ACGGCGTCATGTTCATGCAT 61.026 50.000 6.77 0.00 0.00 3.96
2431 4732 2.600556 CGGCGTCATGTTCATGCATAAG 60.601 50.000 0.00 0.00 0.00 1.73
2433 4734 3.357021 GCGTCATGTTCATGCATAAGTG 58.643 45.455 0.00 0.00 0.00 3.16
2435 4736 4.672542 GCGTCATGTTCATGCATAAGTGTT 60.673 41.667 0.00 0.00 0.00 3.32
2436 4737 5.023920 CGTCATGTTCATGCATAAGTGTTC 58.976 41.667 0.00 0.00 0.00 3.18
2437 4738 5.023920 GTCATGTTCATGCATAAGTGTTCG 58.976 41.667 0.00 0.00 0.00 3.95
2438 4739 4.094739 TCATGTTCATGCATAAGTGTTCGG 59.905 41.667 0.00 0.00 0.00 4.30
2439 4740 3.407698 TGTTCATGCATAAGTGTTCGGT 58.592 40.909 0.00 0.00 0.00 4.69
2440 4741 3.435327 TGTTCATGCATAAGTGTTCGGTC 59.565 43.478 0.00 0.00 0.00 4.79
2441 4742 3.610040 TCATGCATAAGTGTTCGGTCT 57.390 42.857 0.00 0.00 0.00 3.85
2442 4743 3.261580 TCATGCATAAGTGTTCGGTCTG 58.738 45.455 0.00 0.00 0.00 3.51
2443 4744 1.438651 TGCATAAGTGTTCGGTCTGC 58.561 50.000 0.00 0.00 0.00 4.26
2444 4745 1.270571 TGCATAAGTGTTCGGTCTGCA 60.271 47.619 0.00 0.00 35.93 4.41
2445 4746 2.009774 GCATAAGTGTTCGGTCTGCAT 58.990 47.619 0.00 0.00 0.00 3.96
2447 4748 3.621268 GCATAAGTGTTCGGTCTGCATTA 59.379 43.478 0.00 0.00 0.00 1.90
2449 4750 5.560148 CATAAGTGTTCGGTCTGCATTAAC 58.440 41.667 0.00 0.00 0.00 2.01
2450 4751 2.066262 AGTGTTCGGTCTGCATTAACG 58.934 47.619 0.40 0.40 0.00 3.18
2452 4753 2.063266 TGTTCGGTCTGCATTAACGTC 58.937 47.619 6.54 3.17 0.00 4.34
2453 4754 2.288579 TGTTCGGTCTGCATTAACGTCT 60.289 45.455 6.54 0.00 0.00 4.18
2454 4755 2.735134 GTTCGGTCTGCATTAACGTCTT 59.265 45.455 6.54 0.00 0.00 3.01
2457 4758 4.171005 TCGGTCTGCATTAACGTCTTAAG 58.829 43.478 6.54 0.00 0.00 1.85
2459 4760 4.387862 CGGTCTGCATTAACGTCTTAAGTT 59.612 41.667 1.63 0.00 35.75 2.66
2461 4762 6.304882 GGTCTGCATTAACGTCTTAAGTTTC 58.695 40.000 1.63 0.00 33.42 2.78
2462 4763 6.073440 GGTCTGCATTAACGTCTTAAGTTTCA 60.073 38.462 1.63 0.00 33.42 2.69
2463 4764 7.010023 GTCTGCATTAACGTCTTAAGTTTCAG 58.990 38.462 1.63 0.04 33.42 3.02
2465 4766 5.992829 TGCATTAACGTCTTAAGTTTCAGGA 59.007 36.000 1.63 0.00 33.42 3.86
2468 4769 7.412020 GCATTAACGTCTTAAGTTTCAGGAGAG 60.412 40.741 1.63 0.00 33.42 3.20
2469 4770 5.786264 AACGTCTTAAGTTTCAGGAGAGA 57.214 39.130 1.63 0.00 0.00 3.10
2470 4771 5.123805 ACGTCTTAAGTTTCAGGAGAGAC 57.876 43.478 1.63 0.00 0.00 3.36
2471 4772 4.159857 CGTCTTAAGTTTCAGGAGAGACG 58.840 47.826 8.33 8.33 45.60 4.18
2473 4774 3.056749 TCTTAAGTTTCAGGAGAGACGCC 60.057 47.826 1.63 0.00 34.27 5.68
2474 4775 0.321996 AAGTTTCAGGAGAGACGCCC 59.678 55.000 0.00 0.00 34.27 6.13
2475 4776 1.446272 GTTTCAGGAGAGACGCCCG 60.446 63.158 0.00 0.00 0.00 6.13
2476 4777 3.296709 TTTCAGGAGAGACGCCCGC 62.297 63.158 0.00 0.00 0.00 6.13
2481 4782 2.548295 GGAGAGACGCCCGCTCTAG 61.548 68.421 12.25 0.00 42.50 2.43
2482 4783 1.820481 GAGAGACGCCCGCTCTAGT 60.820 63.158 12.25 0.00 42.50 2.57
2483 4784 1.778027 GAGAGACGCCCGCTCTAGTC 61.778 65.000 12.25 0.00 42.50 2.59
2484 4785 3.170810 GAGACGCCCGCTCTAGTCG 62.171 68.421 0.00 0.00 38.53 4.18
2488 4789 2.466982 CGCCCGCTCTAGTCGTACA 61.467 63.158 0.00 0.00 0.00 2.90
2489 4790 1.355916 GCCCGCTCTAGTCGTACAG 59.644 63.158 0.00 0.00 0.00 2.74
2490 4791 1.355916 CCCGCTCTAGTCGTACAGC 59.644 63.158 0.00 0.00 0.00 4.40
2491 4792 1.374343 CCCGCTCTAGTCGTACAGCA 61.374 60.000 0.00 0.00 0.00 4.41
2493 4794 1.065701 CCGCTCTAGTCGTACAGCAAT 59.934 52.381 0.00 0.00 0.00 3.56
2494 4795 2.112522 CGCTCTAGTCGTACAGCAATG 58.887 52.381 0.00 0.00 0.00 2.82
2495 4796 1.855360 GCTCTAGTCGTACAGCAATGC 59.145 52.381 0.00 0.00 0.00 3.56
2496 4797 2.112522 CTCTAGTCGTACAGCAATGCG 58.887 52.381 0.00 0.00 0.00 4.73
2497 4798 0.572590 CTAGTCGTACAGCAATGCGC 59.427 55.000 0.00 0.00 42.91 6.09
2498 4799 0.804544 TAGTCGTACAGCAATGCGCC 60.805 55.000 4.18 0.00 44.04 6.53
2499 4800 3.185365 TCGTACAGCAATGCGCCG 61.185 61.111 4.18 0.00 44.04 6.46
2500 4801 4.868900 CGTACAGCAATGCGCCGC 62.869 66.667 4.18 0.00 44.04 6.53
2501 4802 4.868900 GTACAGCAATGCGCCGCG 62.869 66.667 8.83 8.83 44.04 6.46
2514 4815 3.782244 CCGCGCTCTGTGCTTCAC 61.782 66.667 5.56 0.00 40.11 3.18
2515 4816 2.736236 CGCGCTCTGTGCTTCACT 60.736 61.111 5.56 0.00 40.11 3.41
2516 4817 2.313172 CGCGCTCTGTGCTTCACTT 61.313 57.895 5.56 0.00 40.11 3.16
2517 4818 1.835483 CGCGCTCTGTGCTTCACTTT 61.835 55.000 5.56 0.00 40.11 2.66
2518 4819 0.110464 GCGCTCTGTGCTTCACTTTC 60.110 55.000 0.00 0.00 40.11 2.62
2519 4820 0.514691 CGCTCTGTGCTTCACTTTCC 59.485 55.000 0.00 0.00 40.11 3.13
2520 4821 0.877743 GCTCTGTGCTTCACTTTCCC 59.122 55.000 0.00 0.00 38.95 3.97
2522 4823 2.421619 CTCTGTGCTTCACTTTCCCTC 58.578 52.381 0.00 0.00 35.11 4.30
2523 4824 1.151668 CTGTGCTTCACTTTCCCTCG 58.848 55.000 0.00 0.00 35.11 4.63
2524 4825 0.468226 TGTGCTTCACTTTCCCTCGT 59.532 50.000 0.00 0.00 35.11 4.18
2526 4827 1.531578 GTGCTTCACTTTCCCTCGTTC 59.468 52.381 0.00 0.00 0.00 3.95
2527 4828 1.157585 GCTTCACTTTCCCTCGTTCC 58.842 55.000 0.00 0.00 0.00 3.62
2528 4829 1.429463 CTTCACTTTCCCTCGTTCCG 58.571 55.000 0.00 0.00 0.00 4.30
2529 4830 0.034337 TTCACTTTCCCTCGTTCCGG 59.966 55.000 0.00 0.00 0.00 5.14
2531 4832 0.669625 CACTTTCCCTCGTTCCGGTC 60.670 60.000 0.00 0.00 0.00 4.79
2532 4833 1.117142 ACTTTCCCTCGTTCCGGTCA 61.117 55.000 0.00 0.00 0.00 4.02
2533 4834 0.669625 CTTTCCCTCGTTCCGGTCAC 60.670 60.000 0.00 0.00 0.00 3.67
2535 4836 1.117142 TTCCCTCGTTCCGGTCACTT 61.117 55.000 0.00 0.00 0.00 3.16
2536 4837 1.374252 CCCTCGTTCCGGTCACTTG 60.374 63.158 0.00 0.00 0.00 3.16
2537 4838 1.366366 CCTCGTTCCGGTCACTTGT 59.634 57.895 0.00 0.00 0.00 3.16
2538 4839 0.944311 CCTCGTTCCGGTCACTTGTG 60.944 60.000 0.00 0.00 0.00 3.33
2539 4840 1.557443 CTCGTTCCGGTCACTTGTGC 61.557 60.000 0.00 0.00 0.00 4.57
2541 4842 1.593209 GTTCCGGTCACTTGTGCGA 60.593 57.895 0.00 0.00 0.00 5.10
2542 4843 1.144276 TTCCGGTCACTTGTGCGAA 59.856 52.632 0.00 0.00 0.00 4.70
2544 4845 0.250124 TCCGGTCACTTGTGCGAATT 60.250 50.000 0.00 0.00 0.00 2.17
2545 4846 0.591170 CCGGTCACTTGTGCGAATTT 59.409 50.000 0.00 0.00 0.00 1.82
2547 4848 2.412325 CCGGTCACTTGTGCGAATTTAC 60.412 50.000 0.00 0.00 0.00 2.01
2548 4849 2.478894 CGGTCACTTGTGCGAATTTACT 59.521 45.455 0.00 0.00 0.00 2.24
2549 4850 3.059188 CGGTCACTTGTGCGAATTTACTT 60.059 43.478 0.00 0.00 0.00 2.24
2550 4851 4.464112 GGTCACTTGTGCGAATTTACTTC 58.536 43.478 0.00 0.00 0.00 3.01
2551 4852 4.024387 GGTCACTTGTGCGAATTTACTTCA 60.024 41.667 0.00 0.00 33.10 3.02
2552 4853 4.904154 GTCACTTGTGCGAATTTACTTCAC 59.096 41.667 0.00 0.00 33.10 3.18
2553 4854 3.900116 CACTTGTGCGAATTTACTTCACG 59.100 43.478 0.00 0.00 33.10 4.35
2559 4860 2.156891 GCGAATTTACTTCACGCTCACA 59.843 45.455 0.00 0.00 44.67 3.58
2560 4861 3.181520 GCGAATTTACTTCACGCTCACAT 60.182 43.478 0.00 0.00 44.67 3.21
2561 4862 4.569029 CGAATTTACTTCACGCTCACATC 58.431 43.478 0.00 0.00 33.10 3.06
2562 4863 4.492570 CGAATTTACTTCACGCTCACATCC 60.493 45.833 0.00 0.00 33.10 3.51
2563 4864 3.394674 TTTACTTCACGCTCACATCCA 57.605 42.857 0.00 0.00 0.00 3.41
2564 4865 2.363788 TACTTCACGCTCACATCCAC 57.636 50.000 0.00 0.00 0.00 4.02
2565 4866 0.320771 ACTTCACGCTCACATCCACC 60.321 55.000 0.00 0.00 0.00 4.61
2568 4869 2.046892 ACGCTCACATCCACCAGC 60.047 61.111 0.00 0.00 0.00 4.85
2569 4870 2.821366 CGCTCACATCCACCAGCC 60.821 66.667 0.00 0.00 0.00 4.85
2570 4871 2.439156 GCTCACATCCACCAGCCC 60.439 66.667 0.00 0.00 0.00 5.19
2571 4872 2.273449 CTCACATCCACCAGCCCC 59.727 66.667 0.00 0.00 0.00 5.80
2572 4873 2.204136 TCACATCCACCAGCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
2573 4874 2.044650 CACATCCACCAGCCCCTG 60.045 66.667 0.00 0.00 0.00 4.45
2574 4875 2.532715 ACATCCACCAGCCCCTGT 60.533 61.111 0.00 0.00 0.00 4.00
2575 4876 2.162906 ACATCCACCAGCCCCTGTT 61.163 57.895 0.00 0.00 0.00 3.16
2576 4877 1.679977 CATCCACCAGCCCCTGTTG 60.680 63.158 0.00 0.00 0.00 3.33
2577 4878 2.162906 ATCCACCAGCCCCTGTTGT 61.163 57.895 0.00 0.00 0.00 3.32
2578 4879 2.142292 ATCCACCAGCCCCTGTTGTC 62.142 60.000 0.00 0.00 0.00 3.18
2579 4880 2.669569 CACCAGCCCCTGTTGTCG 60.670 66.667 0.00 0.00 0.00 4.35
2580 4881 3.168528 ACCAGCCCCTGTTGTCGT 61.169 61.111 0.00 0.00 0.00 4.34
2581 4882 2.358737 CCAGCCCCTGTTGTCGTC 60.359 66.667 0.00 0.00 0.00 4.20
2582 4883 2.743718 CAGCCCCTGTTGTCGTCT 59.256 61.111 0.00 0.00 0.00 4.18
2583 4884 1.541310 CCAGCCCCTGTTGTCGTCTA 61.541 60.000 0.00 0.00 0.00 2.59
2584 4885 0.389948 CAGCCCCTGTTGTCGTCTAC 60.390 60.000 0.00 0.00 0.00 2.59
2585 4886 1.079336 GCCCCTGTTGTCGTCTACC 60.079 63.158 0.00 0.00 0.00 3.18
2586 4887 1.542187 GCCCCTGTTGTCGTCTACCT 61.542 60.000 0.00 0.00 0.00 3.08
2587 4888 0.531200 CCCCTGTTGTCGTCTACCTC 59.469 60.000 0.00 0.00 0.00 3.85
2588 4889 0.531200 CCCTGTTGTCGTCTACCTCC 59.469 60.000 0.00 0.00 0.00 4.30
2590 4891 1.067776 CCTGTTGTCGTCTACCTCCAC 60.068 57.143 0.00 0.00 0.00 4.02
2596 4897 0.901580 TCGTCTACCTCCACCCAACC 60.902 60.000 0.00 0.00 0.00 3.77
2597 4898 1.189524 CGTCTACCTCCACCCAACCA 61.190 60.000 0.00 0.00 0.00 3.67
2598 4899 1.061546 GTCTACCTCCACCCAACCAA 58.938 55.000 0.00 0.00 0.00 3.67
2599 4900 1.633945 GTCTACCTCCACCCAACCAAT 59.366 52.381 0.00 0.00 0.00 3.16
2600 4901 2.041216 GTCTACCTCCACCCAACCAATT 59.959 50.000 0.00 0.00 0.00 2.32
2601 4902 2.041081 TCTACCTCCACCCAACCAATTG 59.959 50.000 0.00 0.00 35.40 2.32
2602 4903 0.856982 ACCTCCACCCAACCAATTGA 59.143 50.000 7.12 0.00 38.15 2.57
2603 4904 1.256812 CCTCCACCCAACCAATTGAC 58.743 55.000 7.12 0.00 38.15 3.18
2604 4905 1.256812 CTCCACCCAACCAATTGACC 58.743 55.000 7.12 0.00 38.15 4.02
2606 4907 1.288752 CACCCAACCAATTGACCGC 59.711 57.895 7.12 0.00 38.15 5.68
2607 4908 1.906333 ACCCAACCAATTGACCGCC 60.906 57.895 7.12 0.00 38.15 6.13
2608 4909 1.905843 CCCAACCAATTGACCGCCA 60.906 57.895 7.12 0.00 38.15 5.69
2609 4910 1.257055 CCCAACCAATTGACCGCCAT 61.257 55.000 7.12 0.00 38.15 4.40
2612 4913 0.887933 AACCAATTGACCGCCATGTC 59.112 50.000 7.12 0.00 35.77 3.06
2613 4914 0.038166 ACCAATTGACCGCCATGTCT 59.962 50.000 7.12 0.00 36.21 3.41
2615 4916 1.679944 CCAATTGACCGCCATGTCTCT 60.680 52.381 7.12 0.00 36.21 3.10
2616 4917 1.667724 CAATTGACCGCCATGTCTCTC 59.332 52.381 0.00 0.00 36.21 3.20
2618 4919 0.247460 TTGACCGCCATGTCTCTCTG 59.753 55.000 0.00 0.00 36.21 3.35
2620 4921 0.247736 GACCGCCATGTCTCTCTGTT 59.752 55.000 0.00 0.00 32.39 3.16
2622 4923 0.534412 CCGCCATGTCTCTCTGTTCT 59.466 55.000 0.00 0.00 0.00 3.01
2624 4925 2.266554 CGCCATGTCTCTCTGTTCTTC 58.733 52.381 0.00 0.00 0.00 2.87
2626 4927 3.520569 GCCATGTCTCTCTGTTCTTCTC 58.479 50.000 0.00 0.00 0.00 2.87
2627 4928 3.678529 GCCATGTCTCTCTGTTCTTCTCC 60.679 52.174 0.00 0.00 0.00 3.71
2628 4929 3.118811 CCATGTCTCTCTGTTCTTCTCCC 60.119 52.174 0.00 0.00 0.00 4.30
2629 4930 2.530701 TGTCTCTCTGTTCTTCTCCCC 58.469 52.381 0.00 0.00 0.00 4.81
2630 4931 1.828595 GTCTCTCTGTTCTTCTCCCCC 59.171 57.143 0.00 0.00 0.00 5.40
2632 4933 0.408309 TCTCTGTTCTTCTCCCCCGA 59.592 55.000 0.00 0.00 0.00 5.14
2633 4934 1.203137 TCTCTGTTCTTCTCCCCCGAA 60.203 52.381 0.00 0.00 0.00 4.30
2634 4935 1.205893 CTCTGTTCTTCTCCCCCGAAG 59.794 57.143 0.00 0.00 41.32 3.79
2648 4949 3.717842 CGAAGGAACACCCAAGGAA 57.282 52.632 0.00 0.00 37.41 3.36
2649 4950 1.235724 CGAAGGAACACCCAAGGAAC 58.764 55.000 0.00 0.00 37.41 3.62
2650 4951 1.476110 CGAAGGAACACCCAAGGAACA 60.476 52.381 0.00 0.00 37.41 3.18
2651 4952 2.661718 GAAGGAACACCCAAGGAACAA 58.338 47.619 0.00 0.00 37.41 2.83
2654 4955 1.411074 GGAACACCCAAGGAACAAGGT 60.411 52.381 0.00 0.00 34.14 3.50
2657 4958 1.528309 ACCCAAGGAACAAGGTGCG 60.528 57.895 0.00 0.00 0.00 5.34
2658 4959 2.268076 CCCAAGGAACAAGGTGCGG 61.268 63.158 0.00 0.00 0.00 5.69
2659 4960 2.644992 CAAGGAACAAGGTGCGGC 59.355 61.111 0.00 0.00 0.00 6.53
2660 4961 2.192861 CAAGGAACAAGGTGCGGCA 61.193 57.895 0.00 0.00 0.00 5.69
2661 4962 2.193536 AAGGAACAAGGTGCGGCAC 61.194 57.895 24.43 24.43 0.00 5.01
2696 4997 4.570663 CGACGGCGAGGCTTAGGG 62.571 72.222 16.62 0.00 40.82 3.53
2697 4998 3.459063 GACGGCGAGGCTTAGGGT 61.459 66.667 16.62 0.00 0.00 4.34
2698 4999 3.427598 GACGGCGAGGCTTAGGGTC 62.428 68.421 16.62 0.00 0.00 4.46
2699 5000 3.458163 CGGCGAGGCTTAGGGTCA 61.458 66.667 0.00 0.00 0.00 4.02
2700 5001 2.501610 GGCGAGGCTTAGGGTCAG 59.498 66.667 0.00 0.00 0.00 3.51
2701 5002 2.359967 GGCGAGGCTTAGGGTCAGT 61.360 63.158 0.00 0.00 0.00 3.41
2704 5005 1.726853 CGAGGCTTAGGGTCAGTTTG 58.273 55.000 0.00 0.00 0.00 2.93
2709 5010 2.488347 GGCTTAGGGTCAGTTTGGTTGA 60.488 50.000 0.00 0.00 0.00 3.18
2711 5012 3.253432 GCTTAGGGTCAGTTTGGTTGAAG 59.747 47.826 0.00 0.00 0.00 3.02
2713 5014 0.673985 GGGTCAGTTTGGTTGAAGGC 59.326 55.000 0.00 0.00 0.00 4.35
2715 5016 1.692411 GTCAGTTTGGTTGAAGGCCT 58.308 50.000 0.00 0.00 0.00 5.19
2716 5017 1.338020 GTCAGTTTGGTTGAAGGCCTG 59.662 52.381 5.69 0.00 0.00 4.85
2719 5020 0.673985 GTTTGGTTGAAGGCCTGGAC 59.326 55.000 5.69 5.33 0.00 4.02
2724 5025 1.272147 GGTTGAAGGCCTGGACAAGAT 60.272 52.381 5.69 0.00 0.00 2.40
2725 5026 1.815003 GTTGAAGGCCTGGACAAGATG 59.185 52.381 5.69 0.00 0.00 2.90
2728 5029 2.679716 GGCCTGGACAAGATGCCT 59.320 61.111 0.00 0.00 39.05 4.75
2730 5031 1.751927 GCCTGGACAAGATGCCTGG 60.752 63.158 0.00 0.00 43.79 4.45
2732 5033 0.329261 CCTGGACAAGATGCCTGGAA 59.671 55.000 0.00 0.00 43.70 3.53
2735 5036 2.892852 CTGGACAAGATGCCTGGAAAAA 59.107 45.455 0.00 0.00 0.00 1.94
2754 5055 1.331214 AACCCATGCCTCAGTTGTTG 58.669 50.000 0.00 0.00 0.00 3.33
2755 5056 0.540365 ACCCATGCCTCAGTTGTTGG 60.540 55.000 0.00 0.00 0.00 3.77
2756 5057 0.251297 CCCATGCCTCAGTTGTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
2757 5058 1.619654 CCATGCCTCAGTTGTTGGAA 58.380 50.000 0.00 0.00 0.00 3.53
2758 5059 1.962807 CCATGCCTCAGTTGTTGGAAA 59.037 47.619 0.00 0.00 0.00 3.13
2760 5061 3.007182 CCATGCCTCAGTTGTTGGAAATT 59.993 43.478 0.00 0.00 0.00 1.82
2761 5062 4.503643 CCATGCCTCAGTTGTTGGAAATTT 60.504 41.667 0.00 0.00 0.00 1.82
2762 5063 5.279406 CCATGCCTCAGTTGTTGGAAATTTA 60.279 40.000 0.00 0.00 0.00 1.40
2763 5064 5.195001 TGCCTCAGTTGTTGGAAATTTAC 57.805 39.130 0.00 0.00 0.00 2.01
2764 5065 4.038642 TGCCTCAGTTGTTGGAAATTTACC 59.961 41.667 0.00 0.00 0.00 2.85
2766 5067 5.772521 CCTCAGTTGTTGGAAATTTACCTG 58.227 41.667 0.00 0.00 0.00 4.00
2768 5069 5.205056 TCAGTTGTTGGAAATTTACCTGGT 58.795 37.500 4.05 4.05 0.00 4.00
2769 5070 5.300792 TCAGTTGTTGGAAATTTACCTGGTC 59.699 40.000 0.63 0.00 0.00 4.02
2770 5071 5.068460 CAGTTGTTGGAAATTTACCTGGTCA 59.932 40.000 0.63 0.00 0.00 4.02
2781 5082 3.854669 CTGGTCAGGCGGGCCTAG 61.855 72.222 12.67 7.30 46.28 3.02
2799 5359 2.650602 CGTGCGTGCGCTTTTTGT 60.651 55.556 17.49 0.00 42.51 2.83
2801 5361 1.738144 CGTGCGTGCGCTTTTTGTTT 61.738 50.000 17.49 0.00 42.51 2.83
2804 5364 0.044246 GCGTGCGCTTTTTGTTTCAC 60.044 50.000 9.73 0.00 38.26 3.18
2810 5370 1.581934 GCTTTTTGTTTCACCCTGGC 58.418 50.000 0.00 0.00 0.00 4.85
2812 5372 0.833949 TTTTTGTTTCACCCTGGCCC 59.166 50.000 0.00 0.00 0.00 5.80
2813 5373 0.031616 TTTTGTTTCACCCTGGCCCT 60.032 50.000 0.00 0.00 0.00 5.19
2817 5377 1.850289 TTTCACCCTGGCCCTGCTA 60.850 57.895 0.00 0.00 0.00 3.49
2818 5378 2.137177 TTTCACCCTGGCCCTGCTAC 62.137 60.000 0.00 0.00 0.00 3.58
2819 5379 3.329889 CACCCTGGCCCTGCTACA 61.330 66.667 0.00 0.00 0.00 2.74
2827 5387 2.352422 CCCTGCTACAGCCTTGCA 59.648 61.111 0.00 0.00 41.18 4.08
2829 5389 4.709840 CTGCTACAGCCTTGCAGT 57.290 55.556 6.09 0.00 46.23 4.40
2830 5390 2.168947 CTGCTACAGCCTTGCAGTG 58.831 57.895 6.09 0.00 46.23 3.66
2831 5391 1.919956 CTGCTACAGCCTTGCAGTGC 61.920 60.000 8.58 8.58 46.23 4.40
2832 5392 1.968017 GCTACAGCCTTGCAGTGCA 60.968 57.895 15.37 15.37 33.50 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 9.868277 TTGAAAAATGTTAATCAAGAAGTGTGT 57.132 25.926 0.00 0.00 0.00 3.72
152 153 9.092876 GAAAAACTGTTGACCATGTATTCAAAA 57.907 29.630 0.00 0.00 33.58 2.44
154 155 8.006298 AGAAAAACTGTTGACCATGTATTCAA 57.994 30.769 0.00 0.00 0.00 2.69
155 156 7.581213 AGAAAAACTGTTGACCATGTATTCA 57.419 32.000 0.00 0.00 0.00 2.57
158 159 9.733556 TGTATAGAAAAACTGTTGACCATGTAT 57.266 29.630 0.00 0.00 0.00 2.29
159 160 9.733556 ATGTATAGAAAAACTGTTGACCATGTA 57.266 29.630 0.00 0.00 0.00 2.29
163 164 8.458573 AACATGTATAGAAAAACTGTTGACCA 57.541 30.769 0.00 0.00 0.00 4.02
231 232 7.778470 AATCGTTAACCAAGCATTTGAAAAA 57.222 28.000 0.00 0.00 36.36 1.94
232 233 7.778470 AAATCGTTAACCAAGCATTTGAAAA 57.222 28.000 0.00 0.00 36.36 2.29
233 234 7.778470 AAAATCGTTAACCAAGCATTTGAAA 57.222 28.000 0.00 0.00 36.36 2.69
234 235 7.778470 AAAAATCGTTAACCAAGCATTTGAA 57.222 28.000 0.00 0.00 36.36 2.69
331 332 6.423302 CACTATGCACATGCCTTTTACAAAAA 59.577 34.615 0.49 0.00 41.18 1.94
332 333 5.925397 CACTATGCACATGCCTTTTACAAAA 59.075 36.000 0.49 0.00 41.18 2.44
333 334 5.010516 ACACTATGCACATGCCTTTTACAAA 59.989 36.000 0.49 0.00 41.18 2.83
334 335 4.522405 ACACTATGCACATGCCTTTTACAA 59.478 37.500 0.49 0.00 41.18 2.41
335 336 4.078537 ACACTATGCACATGCCTTTTACA 58.921 39.130 0.49 0.00 41.18 2.41
336 337 4.701956 ACACTATGCACATGCCTTTTAC 57.298 40.909 0.49 0.00 41.18 2.01
337 338 4.764308 TGAACACTATGCACATGCCTTTTA 59.236 37.500 0.49 0.00 41.18 1.52
338 339 3.573538 TGAACACTATGCACATGCCTTTT 59.426 39.130 0.49 0.00 41.18 2.27
339 340 3.156293 TGAACACTATGCACATGCCTTT 58.844 40.909 0.49 0.00 41.18 3.11
364 367 1.201954 GCATGTCGTATGCATATGCCG 60.202 52.381 24.54 19.78 44.00 5.69
493 500 0.603065 TCGGTATGATGCAGGATCCG 59.397 55.000 5.98 11.88 38.16 4.18
844 1020 5.220710 TCTTCTTCTGGTTTCTTCTCTGG 57.779 43.478 0.00 0.00 0.00 3.86
934 1147 5.221342 CCTGTTCTTCTTCGCTGATATAGGT 60.221 44.000 0.00 0.00 0.00 3.08
945 1166 1.493311 GCGCACCTGTTCTTCTTCG 59.507 57.895 0.30 0.00 0.00 3.79
984 1279 3.138798 ATCGGTAGTCGCCTGCGT 61.139 61.111 11.68 0.00 40.74 5.24
1108 1403 2.218454 TGGTGGACCTAACCCGGTG 61.218 63.158 0.00 0.00 37.42 4.94
1115 1410 1.580059 GGAGGATGTGGTGGACCTAA 58.420 55.000 0.00 0.00 36.82 2.69
1143 1466 1.028330 GGTAAAGTACCTTGGCCGCC 61.028 60.000 1.04 1.04 45.52 6.13
1167 1517 3.480470 AGATATGAAATTGGTCAGCCGG 58.520 45.455 0.00 0.00 37.67 6.13
1190 1544 5.288232 CAGAAACAATCGCACAAAACTGAAA 59.712 36.000 0.00 0.00 0.00 2.69
1191 1545 4.797868 CAGAAACAATCGCACAAAACTGAA 59.202 37.500 0.00 0.00 0.00 3.02
1192 1546 4.142491 ACAGAAACAATCGCACAAAACTGA 60.142 37.500 0.00 0.00 0.00 3.41
1193 1547 4.104776 ACAGAAACAATCGCACAAAACTG 58.895 39.130 0.00 0.00 0.00 3.16
1194 1548 4.370364 ACAGAAACAATCGCACAAAACT 57.630 36.364 0.00 0.00 0.00 2.66
1195 1549 5.051973 GGTTACAGAAACAATCGCACAAAAC 60.052 40.000 0.00 0.00 40.08 2.43
1215 1575 5.010719 GCACAGCATATACTAGTCCAGGTTA 59.989 44.000 0.00 0.00 0.00 2.85
1228 1619 5.644977 ACGAGCTATTAGCACAGCATATA 57.355 39.130 17.59 0.00 45.56 0.86
1310 1735 4.873827 GCCAGGTCGAGAACAATTGTTATA 59.126 41.667 23.33 4.07 38.56 0.98
1323 1756 0.463295 ATGCATCTTGCCAGGTCGAG 60.463 55.000 0.00 0.00 44.23 4.04
1364 1801 4.648651 AGCGTTTAGATACAGGGTTTTGT 58.351 39.130 0.00 0.00 35.09 2.83
1383 2097 1.439353 CCGGTCCATGGATCAAAGCG 61.439 60.000 24.71 18.61 0.00 4.68
1443 2161 7.353497 CAGATTGCAGTAGAGCATAAGATTTG 58.647 38.462 0.00 0.00 45.19 2.32
1485 2213 3.306780 GGAGTTTCTCCCGATCTTCACAA 60.307 47.826 4.60 0.00 44.36 3.33
1486 2214 2.233922 GGAGTTTCTCCCGATCTTCACA 59.766 50.000 4.60 0.00 44.36 3.58
1487 2215 2.894902 GGAGTTTCTCCCGATCTTCAC 58.105 52.381 4.60 0.00 44.36 3.18
1697 2429 5.823045 CAGATGAGATAACTTGTTAACCCCC 59.177 44.000 2.48 0.00 0.00 5.40
1726 2458 0.384309 CATCTCGCGCCTACAGGTTA 59.616 55.000 0.00 0.00 37.57 2.85
1784 2517 5.009010 CACATACAAGCTGAAGGTCAAAGTT 59.991 40.000 0.00 0.00 0.00 2.66
1829 2562 6.649155 TCTGGATCCAATTCAACGATCTTAA 58.351 36.000 17.00 0.00 34.19 1.85
2006 3060 0.386476 CAGGTGCTTTGCATGTGTGT 59.614 50.000 0.00 0.00 41.91 3.72
2050 3104 1.447140 GCGACCGATGTTGTGCCTA 60.447 57.895 0.00 0.00 0.00 3.93
2052 3106 2.742372 AGCGACCGATGTTGTGCC 60.742 61.111 0.00 0.00 0.00 5.01
2110 3194 2.722487 CGCTAGTACCCTCCGCTG 59.278 66.667 0.00 0.00 0.00 5.18
2116 3200 0.908180 ACTTTGCCCGCTAGTACCCT 60.908 55.000 0.00 0.00 0.00 4.34
2117 3201 0.743345 CACTTTGCCCGCTAGTACCC 60.743 60.000 0.00 0.00 0.00 3.69
2118 3202 1.366854 GCACTTTGCCCGCTAGTACC 61.367 60.000 0.00 0.00 37.42 3.34
2119 3203 1.693083 CGCACTTTGCCCGCTAGTAC 61.693 60.000 0.00 0.00 41.12 2.73
2121 3205 2.742372 CGCACTTTGCCCGCTAGT 60.742 61.111 0.00 0.00 41.12 2.57
2123 3207 2.740826 GTCGCACTTTGCCCGCTA 60.741 61.111 0.00 0.00 41.12 4.26
2126 3210 4.368808 CACGTCGCACTTTGCCCG 62.369 66.667 0.00 4.00 41.12 6.13
2127 3211 4.025401 CCACGTCGCACTTTGCCC 62.025 66.667 0.00 0.00 41.12 5.36
2128 3212 2.954753 CTCCACGTCGCACTTTGCC 61.955 63.158 0.00 0.00 41.12 4.52
2129 3213 2.551270 CTCCACGTCGCACTTTGC 59.449 61.111 0.00 0.00 40.69 3.68
2134 3218 1.154413 CAAATGCTCCACGTCGCAC 60.154 57.895 5.91 0.00 39.21 5.34
2135 3219 2.965147 GCAAATGCTCCACGTCGCA 61.965 57.895 6.21 6.21 40.87 5.10
2136 3220 2.202349 GCAAATGCTCCACGTCGC 60.202 61.111 0.00 0.00 38.21 5.19
2137 3221 2.096406 CGCAAATGCTCCACGTCG 59.904 61.111 3.63 0.00 39.32 5.12
2138 3222 1.132640 GACGCAAATGCTCCACGTC 59.867 57.895 3.63 0.00 45.10 4.34
2140 3224 2.244436 CTGGACGCAAATGCTCCACG 62.244 60.000 17.15 12.02 40.67 4.94
2141 3225 1.503542 CTGGACGCAAATGCTCCAC 59.496 57.895 17.15 2.30 40.67 4.02
2144 3228 1.911293 TTCGCTGGACGCAAATGCTC 61.911 55.000 3.63 0.71 43.23 4.26
2145 3229 1.965930 TTCGCTGGACGCAAATGCT 60.966 52.632 3.63 0.00 43.23 3.79
2147 3231 0.168788 ATGTTCGCTGGACGCAAATG 59.831 50.000 0.00 0.00 43.23 2.32
2148 3232 0.447801 GATGTTCGCTGGACGCAAAT 59.552 50.000 0.00 0.00 43.23 2.32
2149 3233 1.573829 GGATGTTCGCTGGACGCAAA 61.574 55.000 0.00 0.00 43.23 3.68
2150 3234 2.032634 GGATGTTCGCTGGACGCAA 61.033 57.895 0.00 0.00 43.23 4.85
2151 3235 2.434185 GGATGTTCGCTGGACGCA 60.434 61.111 0.00 0.00 43.23 5.24
2152 3236 1.815421 ATGGATGTTCGCTGGACGC 60.815 57.895 0.00 0.00 43.23 5.19
2153 3237 1.431488 CCATGGATGTTCGCTGGACG 61.431 60.000 5.56 0.00 45.62 4.79
2154 3238 1.097547 CCCATGGATGTTCGCTGGAC 61.098 60.000 15.22 0.00 0.00 4.02
2156 3240 1.077501 ACCCATGGATGTTCGCTGG 60.078 57.895 15.22 0.00 0.00 4.85
2158 3242 0.038166 AACACCCATGGATGTTCGCT 59.962 50.000 19.58 0.00 33.80 4.93
2159 3243 1.400494 GTAACACCCATGGATGTTCGC 59.600 52.381 28.35 17.82 39.67 4.70
2160 3244 1.663643 CGTAACACCCATGGATGTTCG 59.336 52.381 28.35 24.20 39.67 3.95
2163 3247 2.871096 AACGTAACACCCATGGATGT 57.129 45.000 15.22 10.59 0.00 3.06
2164 3248 3.504134 TGAAAACGTAACACCCATGGATG 59.496 43.478 15.22 9.67 0.00 3.51
2165 3249 3.504520 GTGAAAACGTAACACCCATGGAT 59.495 43.478 15.22 0.00 0.00 3.41
2166 3250 2.879646 GTGAAAACGTAACACCCATGGA 59.120 45.455 15.22 0.00 0.00 3.41
2168 3252 3.276882 GGTGAAAACGTAACACCCATG 57.723 47.619 20.62 0.00 45.53 3.66
2176 3260 3.312973 ACGAGCAAATGGTGAAAACGTAA 59.687 39.130 0.00 0.00 0.00 3.18
2177 3261 2.873472 ACGAGCAAATGGTGAAAACGTA 59.127 40.909 0.00 0.00 0.00 3.57
2180 3264 3.042887 GTCACGAGCAAATGGTGAAAAC 58.957 45.455 0.00 0.00 46.59 2.43
2181 3265 2.948979 AGTCACGAGCAAATGGTGAAAA 59.051 40.909 0.00 0.00 46.59 2.29
2183 3267 2.254546 AGTCACGAGCAAATGGTGAA 57.745 45.000 0.00 0.00 46.59 3.18
2184 3268 3.325870 CTTAGTCACGAGCAAATGGTGA 58.674 45.455 0.00 0.00 43.50 4.02
2185 3269 2.159653 GCTTAGTCACGAGCAAATGGTG 60.160 50.000 1.76 0.00 38.87 4.17
2192 3276 2.827604 GCTTGCTTAGTCACGAGCA 58.172 52.632 4.95 4.95 46.37 4.26
2194 3278 2.677199 TCTTGCTTGCTTAGTCACGAG 58.323 47.619 0.00 0.00 0.00 4.18
2196 3280 5.725110 ATAATCTTGCTTGCTTAGTCACG 57.275 39.130 0.00 0.00 0.00 4.35
2198 3282 8.575589 TCAAAAATAATCTTGCTTGCTTAGTCA 58.424 29.630 0.00 0.00 0.00 3.41
2199 3283 8.970691 TCAAAAATAATCTTGCTTGCTTAGTC 57.029 30.769 0.00 0.00 0.00 2.59
2200 3284 9.578439 GATCAAAAATAATCTTGCTTGCTTAGT 57.422 29.630 0.00 0.00 0.00 2.24
2201 3285 9.577110 TGATCAAAAATAATCTTGCTTGCTTAG 57.423 29.630 0.00 0.00 0.00 2.18
2203 3287 8.879759 CATGATCAAAAATAATCTTGCTTGCTT 58.120 29.630 0.00 0.00 0.00 3.91
2205 3289 8.193250 ACATGATCAAAAATAATCTTGCTTGC 57.807 30.769 0.00 0.00 32.92 4.01
2223 4436 7.664082 ATCAGACATCCGAATTAACATGATC 57.336 36.000 0.00 0.00 0.00 2.92
2226 4439 7.641411 GTGAAATCAGACATCCGAATTAACATG 59.359 37.037 0.00 0.00 0.00 3.21
2227 4440 7.201732 GGTGAAATCAGACATCCGAATTAACAT 60.202 37.037 0.00 0.00 0.00 2.71
2228 4441 6.093495 GGTGAAATCAGACATCCGAATTAACA 59.907 38.462 0.00 0.00 0.00 2.41
2229 4442 6.093495 TGGTGAAATCAGACATCCGAATTAAC 59.907 38.462 0.00 0.00 0.00 2.01
2233 4446 4.194640 CTGGTGAAATCAGACATCCGAAT 58.805 43.478 0.00 0.00 34.36 3.34
2236 4449 1.667724 GCTGGTGAAATCAGACATCCG 59.332 52.381 0.00 0.00 34.36 4.18
2237 4450 2.715046 TGCTGGTGAAATCAGACATCC 58.285 47.619 0.00 0.00 34.36 3.51
2238 4451 4.771590 TTTGCTGGTGAAATCAGACATC 57.228 40.909 0.00 0.00 34.36 3.06
2241 4454 3.248266 GCATTTGCTGGTGAAATCAGAC 58.752 45.455 0.00 0.00 38.21 3.51
2243 4456 2.991190 GTGCATTTGCTGGTGAAATCAG 59.009 45.455 3.94 0.00 42.66 2.90
2246 4459 3.592059 GATGTGCATTTGCTGGTGAAAT 58.408 40.909 3.94 0.00 42.66 2.17
2247 4460 2.607526 CGATGTGCATTTGCTGGTGAAA 60.608 45.455 3.94 0.00 42.66 2.69
2248 4461 1.068402 CGATGTGCATTTGCTGGTGAA 60.068 47.619 3.94 0.00 42.66 3.18
2249 4462 0.522626 CGATGTGCATTTGCTGGTGA 59.477 50.000 3.94 0.00 42.66 4.02
2250 4463 0.522626 TCGATGTGCATTTGCTGGTG 59.477 50.000 3.94 0.00 42.66 4.17
2252 4465 1.133598 ACATCGATGTGCATTTGCTGG 59.866 47.619 29.49 0.00 40.03 4.85
2253 4466 2.554806 ACATCGATGTGCATTTGCTG 57.445 45.000 29.49 1.13 40.03 4.41
2267 4537 9.901724 GATTAGTGTTTATCAGTTTACACATCG 57.098 33.333 0.00 0.00 42.46 3.84
2269 4539 9.959721 AGGATTAGTGTTTATCAGTTTACACAT 57.040 29.630 0.00 0.00 42.46 3.21
2301 4602 2.648431 CGTGTAAAAATGACGAAACGCC 59.352 45.455 0.00 0.00 35.05 5.68
2303 4604 2.648431 GGCGTGTAAAAATGACGAAACG 59.352 45.455 0.00 0.00 35.05 3.60
2304 4605 3.619729 TGGCGTGTAAAAATGACGAAAC 58.380 40.909 0.00 0.00 35.05 2.78
2305 4606 3.304123 CCTGGCGTGTAAAAATGACGAAA 60.304 43.478 0.00 0.00 35.05 3.46
2306 4607 2.224549 CCTGGCGTGTAAAAATGACGAA 59.775 45.455 0.00 0.00 35.05 3.85
2307 4608 1.801771 CCTGGCGTGTAAAAATGACGA 59.198 47.619 0.00 0.00 35.05 4.20
2308 4609 1.801771 TCCTGGCGTGTAAAAATGACG 59.198 47.619 0.00 0.00 36.18 4.35
2309 4610 3.907894 TTCCTGGCGTGTAAAAATGAC 57.092 42.857 0.00 0.00 0.00 3.06
2311 4612 3.851403 CGATTTCCTGGCGTGTAAAAATG 59.149 43.478 0.00 0.00 0.00 2.32
2312 4613 3.119637 CCGATTTCCTGGCGTGTAAAAAT 60.120 43.478 0.00 0.00 0.00 1.82
2313 4614 2.226912 CCGATTTCCTGGCGTGTAAAAA 59.773 45.455 0.00 0.00 0.00 1.94
2314 4615 1.807742 CCGATTTCCTGGCGTGTAAAA 59.192 47.619 0.00 0.00 0.00 1.52
2315 4616 1.002201 TCCGATTTCCTGGCGTGTAAA 59.998 47.619 0.00 0.00 0.00 2.01
2316 4617 0.609151 TCCGATTTCCTGGCGTGTAA 59.391 50.000 0.00 0.00 0.00 2.41
2317 4618 0.174845 CTCCGATTTCCTGGCGTGTA 59.825 55.000 0.00 0.00 0.00 2.90
2318 4619 1.079127 CTCCGATTTCCTGGCGTGT 60.079 57.895 0.00 0.00 0.00 4.49
2319 4620 2.464459 GCTCCGATTTCCTGGCGTG 61.464 63.158 0.00 0.00 0.00 5.34
2321 4622 3.264897 CGCTCCGATTTCCTGGCG 61.265 66.667 0.00 0.00 36.89 5.69
2323 4624 2.876368 AAGCCGCTCCGATTTCCTGG 62.876 60.000 0.00 0.00 0.00 4.45
2324 4625 0.179084 TAAGCCGCTCCGATTTCCTG 60.179 55.000 0.00 0.00 0.00 3.86
2325 4626 0.105039 CTAAGCCGCTCCGATTTCCT 59.895 55.000 0.00 0.00 0.00 3.36
2326 4627 0.880718 CCTAAGCCGCTCCGATTTCC 60.881 60.000 0.00 0.00 0.00 3.13
2327 4628 0.179081 ACCTAAGCCGCTCCGATTTC 60.179 55.000 0.00 0.00 0.00 2.17
2329 4630 0.388294 GTACCTAAGCCGCTCCGATT 59.612 55.000 0.00 0.00 0.00 3.34
2334 4635 0.179084 TGCATGTACCTAAGCCGCTC 60.179 55.000 0.00 0.00 0.00 5.03
2335 4636 0.462047 GTGCATGTACCTAAGCCGCT 60.462 55.000 1.96 0.00 0.00 5.52
2336 4637 1.762222 CGTGCATGTACCTAAGCCGC 61.762 60.000 8.45 0.00 0.00 6.53
2337 4638 0.459585 ACGTGCATGTACCTAAGCCG 60.460 55.000 10.57 0.00 0.00 5.52
2338 4639 1.006832 CACGTGCATGTACCTAAGCC 58.993 55.000 12.10 0.00 0.00 4.35
2339 4640 0.373716 GCACGTGCATGTACCTAAGC 59.626 55.000 34.52 6.13 41.59 3.09
2340 4641 2.010145 AGCACGTGCATGTACCTAAG 57.990 50.000 39.21 0.00 45.16 2.18
2341 4642 2.465860 AAGCACGTGCATGTACCTAA 57.534 45.000 39.21 0.00 45.16 2.69
2342 4643 3.118920 ACATAAGCACGTGCATGTACCTA 60.119 43.478 39.21 18.95 45.16 3.08
2344 4645 2.006888 ACATAAGCACGTGCATGTACC 58.993 47.619 39.21 11.13 45.16 3.34
2345 4646 3.124466 TCAACATAAGCACGTGCATGTAC 59.876 43.478 39.21 11.90 45.16 2.90
2346 4647 3.330267 TCAACATAAGCACGTGCATGTA 58.670 40.909 39.21 27.34 45.16 2.29
2347 4648 2.150390 TCAACATAAGCACGTGCATGT 58.850 42.857 39.21 34.18 45.16 3.21
2348 4649 2.898181 TCAACATAAGCACGTGCATG 57.102 45.000 39.21 33.56 45.16 4.06
2349 4650 3.439825 TGATTCAACATAAGCACGTGCAT 59.560 39.130 39.21 31.37 45.16 3.96
2350 4651 2.810852 TGATTCAACATAAGCACGTGCA 59.189 40.909 39.21 22.69 45.16 4.57
2351 4652 3.125146 TCTGATTCAACATAAGCACGTGC 59.875 43.478 32.79 32.79 42.49 5.34
2354 4655 7.383300 TGATCTATCTGATTCAACATAAGCACG 59.617 37.037 0.00 0.00 35.14 5.34
2355 4656 8.599055 TGATCTATCTGATTCAACATAAGCAC 57.401 34.615 0.00 0.00 35.14 4.40
2356 4657 9.269453 CTTGATCTATCTGATTCAACATAAGCA 57.731 33.333 0.00 0.00 35.14 3.91
2357 4658 8.229137 GCTTGATCTATCTGATTCAACATAAGC 58.771 37.037 0.00 0.00 35.14 3.09
2358 4659 9.269453 TGCTTGATCTATCTGATTCAACATAAG 57.731 33.333 0.00 0.00 35.14 1.73
2359 4660 9.269453 CTGCTTGATCTATCTGATTCAACATAA 57.731 33.333 0.00 0.00 35.14 1.90
2362 4663 6.647229 ACTGCTTGATCTATCTGATTCAACA 58.353 36.000 0.00 1.79 35.14 3.33
2363 4664 7.551035 AACTGCTTGATCTATCTGATTCAAC 57.449 36.000 0.00 0.00 35.14 3.18
2365 4666 7.609146 ACAAAACTGCTTGATCTATCTGATTCA 59.391 33.333 0.00 0.00 35.14 2.57
2366 4667 7.983307 ACAAAACTGCTTGATCTATCTGATTC 58.017 34.615 0.00 0.00 35.14 2.52
2368 4669 6.541641 GGACAAAACTGCTTGATCTATCTGAT 59.458 38.462 0.00 0.00 38.27 2.90
2369 4670 5.877012 GGACAAAACTGCTTGATCTATCTGA 59.123 40.000 0.00 0.00 0.00 3.27
2370 4671 5.879223 AGGACAAAACTGCTTGATCTATCTG 59.121 40.000 0.00 0.00 0.00 2.90
2372 4673 6.372659 TCAAGGACAAAACTGCTTGATCTATC 59.627 38.462 0.00 0.00 0.00 2.08
2373 4674 6.240894 TCAAGGACAAAACTGCTTGATCTAT 58.759 36.000 0.00 0.00 0.00 1.98
2375 4676 4.464008 TCAAGGACAAAACTGCTTGATCT 58.536 39.130 0.00 0.00 0.00 2.75
2376 4677 4.836125 TCAAGGACAAAACTGCTTGATC 57.164 40.909 0.00 0.00 0.00 2.92
2377 4678 5.796424 AATCAAGGACAAAACTGCTTGAT 57.204 34.783 9.40 9.40 41.47 2.57
2379 4680 7.147312 TGATTAATCAAGGACAAAACTGCTTG 58.853 34.615 15.82 0.00 33.08 4.01
2380 4681 7.288810 TGATTAATCAAGGACAAAACTGCTT 57.711 32.000 15.82 0.00 33.08 3.91
2382 4683 6.035327 GCATGATTAATCAAGGACAAAACTGC 59.965 38.462 21.50 17.25 40.69 4.40
2383 4684 6.532657 GGCATGATTAATCAAGGACAAAACTG 59.467 38.462 21.50 12.02 40.69 3.16
2385 4686 6.311200 GTGGCATGATTAATCAAGGACAAAAC 59.689 38.462 23.19 12.39 40.69 2.43
2387 4688 5.392919 CGTGGCATGATTAATCAAGGACAAA 60.393 40.000 23.19 6.48 40.69 2.83
2388 4689 4.096231 CGTGGCATGATTAATCAAGGACAA 59.904 41.667 23.19 10.57 40.69 3.18
2389 4690 3.627123 CGTGGCATGATTAATCAAGGACA 59.373 43.478 21.50 20.41 40.69 4.02
2390 4691 3.003689 CCGTGGCATGATTAATCAAGGAC 59.996 47.826 21.50 18.27 40.69 3.85
2392 4693 2.287788 GCCGTGGCATGATTAATCAAGG 60.288 50.000 21.50 16.86 40.69 3.61
2393 4694 2.602933 CGCCGTGGCATGATTAATCAAG 60.603 50.000 21.50 17.97 42.06 3.02
2394 4695 1.333308 CGCCGTGGCATGATTAATCAA 59.667 47.619 21.50 2.85 42.06 2.57
2395 4696 0.943673 CGCCGTGGCATGATTAATCA 59.056 50.000 20.07 20.07 42.06 2.57
2396 4697 0.944386 ACGCCGTGGCATGATTAATC 59.056 50.000 12.06 8.60 42.06 1.75
2398 4699 0.391793 TGACGCCGTGGCATGATTAA 60.392 50.000 12.06 0.00 42.06 1.40
2399 4700 0.179059 ATGACGCCGTGGCATGATTA 60.179 50.000 12.06 0.00 42.06 1.75
2400 4701 1.451927 ATGACGCCGTGGCATGATT 60.452 52.632 12.06 0.00 42.06 2.57
2401 4702 2.182181 CATGACGCCGTGGCATGAT 61.182 57.895 21.27 0.00 41.35 2.45
2402 4703 2.819154 CATGACGCCGTGGCATGA 60.819 61.111 21.27 0.00 41.35 3.07
2403 4704 2.582202 GAACATGACGCCGTGGCATG 62.582 60.000 23.57 23.57 43.70 4.06
2404 4705 2.359850 AACATGACGCCGTGGCAT 60.360 55.556 12.06 0.00 42.06 4.40
2405 4706 3.047280 GAACATGACGCCGTGGCA 61.047 61.111 12.06 0.00 42.06 4.92
2406 4707 2.398554 ATGAACATGACGCCGTGGC 61.399 57.895 0.00 0.00 33.64 5.01
2407 4708 1.425031 CATGAACATGACGCCGTGG 59.575 57.895 8.89 0.00 41.20 4.94
2408 4709 1.226101 GCATGAACATGACGCCGTG 60.226 57.895 17.40 0.00 41.20 4.94
2409 4710 1.026182 ATGCATGAACATGACGCCGT 61.026 50.000 17.40 0.00 41.20 5.68
2410 4711 0.936600 TATGCATGAACATGACGCCG 59.063 50.000 17.40 0.00 41.20 6.46
2411 4712 2.355756 ACTTATGCATGAACATGACGCC 59.644 45.455 17.40 1.91 41.20 5.68
2413 4714 4.604843 ACACTTATGCATGAACATGACG 57.395 40.909 17.40 4.11 41.20 4.35
2414 4715 5.023920 CGAACACTTATGCATGAACATGAC 58.976 41.667 17.40 9.72 41.20 3.06
2416 4717 4.142622 ACCGAACACTTATGCATGAACATG 60.143 41.667 10.16 10.04 41.60 3.21
2417 4718 4.009675 ACCGAACACTTATGCATGAACAT 58.990 39.130 10.16 0.00 0.00 2.71
2418 4719 3.407698 ACCGAACACTTATGCATGAACA 58.592 40.909 10.16 0.00 0.00 3.18
2419 4720 3.684788 AGACCGAACACTTATGCATGAAC 59.315 43.478 10.16 0.00 0.00 3.18
2420 4721 3.684305 CAGACCGAACACTTATGCATGAA 59.316 43.478 10.16 0.00 0.00 2.57
2422 4723 2.223112 GCAGACCGAACACTTATGCATG 60.223 50.000 10.16 0.00 32.58 4.06
2423 4724 2.009774 GCAGACCGAACACTTATGCAT 58.990 47.619 3.79 3.79 32.58 3.96
2425 4726 1.438651 TGCAGACCGAACACTTATGC 58.561 50.000 0.00 0.00 0.00 3.14
2426 4727 5.560148 GTTAATGCAGACCGAACACTTATG 58.440 41.667 0.00 0.00 0.00 1.90
2428 4729 3.676172 CGTTAATGCAGACCGAACACTTA 59.324 43.478 0.00 0.00 0.00 2.24
2431 4732 1.796459 ACGTTAATGCAGACCGAACAC 59.204 47.619 0.00 0.00 0.00 3.32
2433 4734 2.334838 AGACGTTAATGCAGACCGAAC 58.665 47.619 0.00 0.00 0.00 3.95
2435 4736 2.736144 AAGACGTTAATGCAGACCGA 57.264 45.000 0.00 0.00 0.00 4.69
2436 4737 3.924686 ACTTAAGACGTTAATGCAGACCG 59.075 43.478 10.09 0.00 0.00 4.79
2437 4738 5.857822 AACTTAAGACGTTAATGCAGACC 57.142 39.130 10.09 0.00 0.00 3.85
2438 4739 6.884187 TGAAACTTAAGACGTTAATGCAGAC 58.116 36.000 10.09 0.00 0.00 3.51
2439 4740 6.147164 CCTGAAACTTAAGACGTTAATGCAGA 59.853 38.462 10.09 0.00 0.00 4.26
2440 4741 6.147164 TCCTGAAACTTAAGACGTTAATGCAG 59.853 38.462 10.09 4.25 0.00 4.41
2441 4742 5.992829 TCCTGAAACTTAAGACGTTAATGCA 59.007 36.000 10.09 0.00 0.00 3.96
2442 4743 6.367969 TCTCCTGAAACTTAAGACGTTAATGC 59.632 38.462 10.09 0.00 0.00 3.56
2443 4744 7.813148 TCTCTCCTGAAACTTAAGACGTTAATG 59.187 37.037 10.09 0.00 0.00 1.90
2444 4745 7.813627 GTCTCTCCTGAAACTTAAGACGTTAAT 59.186 37.037 10.09 0.00 0.00 1.40
2445 4746 7.144000 GTCTCTCCTGAAACTTAAGACGTTAA 58.856 38.462 10.09 0.00 0.00 2.01
2447 4748 5.530712 GTCTCTCCTGAAACTTAAGACGTT 58.469 41.667 10.09 0.00 0.00 3.99
2449 4750 4.159857 CGTCTCTCCTGAAACTTAAGACG 58.840 47.826 10.09 7.50 45.54 4.18
2450 4751 3.921630 GCGTCTCTCCTGAAACTTAAGAC 59.078 47.826 10.09 1.06 0.00 3.01
2452 4753 3.254892 GGCGTCTCTCCTGAAACTTAAG 58.745 50.000 0.00 0.00 0.00 1.85
2453 4754 2.028385 GGGCGTCTCTCCTGAAACTTAA 60.028 50.000 0.00 0.00 0.00 1.85
2454 4755 1.549170 GGGCGTCTCTCCTGAAACTTA 59.451 52.381 0.00 0.00 0.00 2.24
2457 4758 1.446272 CGGGCGTCTCTCCTGAAAC 60.446 63.158 0.00 0.00 31.56 2.78
2459 4760 3.760035 GCGGGCGTCTCTCCTGAA 61.760 66.667 0.00 0.00 31.56 3.02
2461 4762 4.200283 GAGCGGGCGTCTCTCCTG 62.200 72.222 0.00 0.00 0.00 3.86
2462 4763 2.951475 CTAGAGCGGGCGTCTCTCCT 62.951 65.000 9.90 0.00 40.95 3.69
2463 4764 2.516460 TAGAGCGGGCGTCTCTCC 60.516 66.667 9.90 0.00 40.95 3.71
2465 4766 1.820481 GACTAGAGCGGGCGTCTCT 60.820 63.158 11.10 11.10 42.92 3.10
2468 4769 2.176273 TACGACTAGAGCGGGCGTC 61.176 63.158 12.77 0.00 36.51 5.19
2469 4770 2.124983 TACGACTAGAGCGGGCGT 60.125 61.111 12.77 7.85 38.81 5.68
2470 4771 2.327244 GTACGACTAGAGCGGGCG 59.673 66.667 12.77 0.00 0.00 6.13
2471 4772 1.355916 CTGTACGACTAGAGCGGGC 59.644 63.158 12.77 6.74 0.00 6.13
2473 4774 0.450583 TTGCTGTACGACTAGAGCGG 59.549 55.000 12.77 0.00 41.29 5.52
2474 4775 2.112522 CATTGCTGTACGACTAGAGCG 58.887 52.381 0.00 2.15 41.29 5.03
2475 4776 1.855360 GCATTGCTGTACGACTAGAGC 59.145 52.381 0.16 0.00 39.30 4.09
2476 4777 2.112522 CGCATTGCTGTACGACTAGAG 58.887 52.381 7.12 0.00 0.00 2.43
2481 4782 2.399611 GGCGCATTGCTGTACGAC 59.600 61.111 10.83 0.00 45.43 4.34
2482 4783 3.185365 CGGCGCATTGCTGTACGA 61.185 61.111 10.83 0.00 45.38 3.43
2501 4802 0.877743 GGGAAAGTGAAGCACAGAGC 59.122 55.000 0.00 0.00 46.19 4.09
2502 4803 2.421619 GAGGGAAAGTGAAGCACAGAG 58.578 52.381 0.00 0.00 36.74 3.35
2503 4804 1.270305 CGAGGGAAAGTGAAGCACAGA 60.270 52.381 0.00 0.00 36.74 3.41
2504 4805 1.151668 CGAGGGAAAGTGAAGCACAG 58.848 55.000 0.00 0.00 36.74 3.66
2505 4806 0.468226 ACGAGGGAAAGTGAAGCACA 59.532 50.000 0.00 0.00 36.74 4.57
2506 4807 1.531578 GAACGAGGGAAAGTGAAGCAC 59.468 52.381 0.00 0.00 34.10 4.40
2507 4808 1.542547 GGAACGAGGGAAAGTGAAGCA 60.543 52.381 0.00 0.00 0.00 3.91
2508 4809 1.157585 GGAACGAGGGAAAGTGAAGC 58.842 55.000 0.00 0.00 0.00 3.86
2523 4824 1.155424 TTCGCACAAGTGACCGGAAC 61.155 55.000 9.46 6.13 33.17 3.62
2524 4825 0.250124 ATTCGCACAAGTGACCGGAA 60.250 50.000 9.46 0.00 33.17 4.30
2526 4827 0.591170 AAATTCGCACAAGTGACCGG 59.409 50.000 0.00 0.00 33.17 5.28
2527 4828 2.478894 AGTAAATTCGCACAAGTGACCG 59.521 45.455 4.04 0.00 33.17 4.79
2528 4829 4.024387 TGAAGTAAATTCGCACAAGTGACC 60.024 41.667 4.04 0.00 41.14 4.02
2529 4830 4.904154 GTGAAGTAAATTCGCACAAGTGAC 59.096 41.667 4.04 0.00 45.88 3.67
2531 4832 3.900116 CGTGAAGTAAATTCGCACAAGTG 59.100 43.478 0.00 0.00 46.77 3.16
2532 4833 3.606153 GCGTGAAGTAAATTCGCACAAGT 60.606 43.478 0.00 0.00 46.77 3.16
2533 4834 2.902484 GCGTGAAGTAAATTCGCACAAG 59.098 45.455 0.00 0.00 46.77 3.16
2535 4836 2.139917 AGCGTGAAGTAAATTCGCACA 58.860 42.857 10.21 0.00 46.77 4.57
2536 4837 2.156891 TGAGCGTGAAGTAAATTCGCAC 59.843 45.455 10.21 4.72 46.77 5.34
2537 4838 2.156891 GTGAGCGTGAAGTAAATTCGCA 59.843 45.455 10.21 0.00 46.77 5.10
2538 4839 2.156891 TGTGAGCGTGAAGTAAATTCGC 59.843 45.455 0.00 0.00 43.64 4.70
2539 4840 4.492570 GGATGTGAGCGTGAAGTAAATTCG 60.493 45.833 0.00 0.00 41.14 3.34
2541 4842 4.154195 GTGGATGTGAGCGTGAAGTAAATT 59.846 41.667 0.00 0.00 0.00 1.82
2542 4843 3.684788 GTGGATGTGAGCGTGAAGTAAAT 59.315 43.478 0.00 0.00 0.00 1.40
2544 4845 2.611971 GGTGGATGTGAGCGTGAAGTAA 60.612 50.000 0.00 0.00 0.00 2.24
2545 4846 1.067142 GGTGGATGTGAGCGTGAAGTA 60.067 52.381 0.00 0.00 0.00 2.24
2547 4848 0.320683 TGGTGGATGTGAGCGTGAAG 60.321 55.000 0.00 0.00 0.00 3.02
2548 4849 0.320683 CTGGTGGATGTGAGCGTGAA 60.321 55.000 0.00 0.00 0.00 3.18
2549 4850 1.293179 CTGGTGGATGTGAGCGTGA 59.707 57.895 0.00 0.00 0.00 4.35
2550 4851 2.393768 GCTGGTGGATGTGAGCGTG 61.394 63.158 0.00 0.00 0.00 5.34
2551 4852 2.046892 GCTGGTGGATGTGAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
2552 4853 2.821366 GGCTGGTGGATGTGAGCG 60.821 66.667 0.00 0.00 31.89 5.03
2553 4854 2.439156 GGGCTGGTGGATGTGAGC 60.439 66.667 0.00 0.00 0.00 4.26
2554 4855 2.273449 GGGGCTGGTGGATGTGAG 59.727 66.667 0.00 0.00 0.00 3.51
2559 4860 2.765969 CAACAGGGGCTGGTGGAT 59.234 61.111 0.00 0.00 44.58 3.41
2563 4864 3.168528 ACGACAACAGGGGCTGGT 61.169 61.111 0.00 0.00 35.51 4.00
2564 4865 1.541310 TAGACGACAACAGGGGCTGG 61.541 60.000 0.00 0.00 35.51 4.85
2565 4866 0.389948 GTAGACGACAACAGGGGCTG 60.390 60.000 0.00 0.00 37.52 4.85
2568 4869 0.531200 GAGGTAGACGACAACAGGGG 59.469 60.000 0.00 0.00 0.00 4.79
2569 4870 0.531200 GGAGGTAGACGACAACAGGG 59.469 60.000 0.00 0.00 0.00 4.45
2570 4871 1.067776 GTGGAGGTAGACGACAACAGG 60.068 57.143 0.00 0.00 0.00 4.00
2571 4872 1.067776 GGTGGAGGTAGACGACAACAG 60.068 57.143 0.00 0.00 0.00 3.16
2572 4873 0.963962 GGTGGAGGTAGACGACAACA 59.036 55.000 0.00 0.00 0.00 3.33
2573 4874 0.245813 GGGTGGAGGTAGACGACAAC 59.754 60.000 0.00 0.00 0.00 3.32
2574 4875 0.178955 TGGGTGGAGGTAGACGACAA 60.179 55.000 0.00 0.00 0.00 3.18
2575 4876 0.178955 TTGGGTGGAGGTAGACGACA 60.179 55.000 0.00 0.00 0.00 4.35
2576 4877 0.245813 GTTGGGTGGAGGTAGACGAC 59.754 60.000 0.00 0.00 0.00 4.34
2577 4878 0.901580 GGTTGGGTGGAGGTAGACGA 60.902 60.000 0.00 0.00 0.00 4.20
2578 4879 1.189524 TGGTTGGGTGGAGGTAGACG 61.190 60.000 0.00 0.00 0.00 4.18
2579 4880 1.061546 TTGGTTGGGTGGAGGTAGAC 58.938 55.000 0.00 0.00 0.00 2.59
2580 4881 2.041081 CAATTGGTTGGGTGGAGGTAGA 59.959 50.000 0.00 0.00 0.00 2.59
2581 4882 2.041081 TCAATTGGTTGGGTGGAGGTAG 59.959 50.000 5.42 0.00 35.99 3.18
2582 4883 2.066592 TCAATTGGTTGGGTGGAGGTA 58.933 47.619 5.42 0.00 35.99 3.08
2583 4884 0.856982 TCAATTGGTTGGGTGGAGGT 59.143 50.000 5.42 0.00 35.99 3.85
2584 4885 1.256812 GTCAATTGGTTGGGTGGAGG 58.743 55.000 5.42 0.00 35.99 4.30
2585 4886 1.256812 GGTCAATTGGTTGGGTGGAG 58.743 55.000 5.42 0.00 35.99 3.86
2586 4887 0.538516 CGGTCAATTGGTTGGGTGGA 60.539 55.000 5.42 0.00 35.99 4.02
2587 4888 1.963679 CGGTCAATTGGTTGGGTGG 59.036 57.895 5.42 0.00 35.99 4.61
2588 4889 1.288752 GCGGTCAATTGGTTGGGTG 59.711 57.895 5.42 0.00 35.99 4.61
2590 4891 1.257055 ATGGCGGTCAATTGGTTGGG 61.257 55.000 5.42 0.00 35.99 4.12
2596 4897 1.667724 GAGAGACATGGCGGTCAATTG 59.332 52.381 11.06 0.00 40.29 2.32
2597 4898 1.556911 AGAGAGACATGGCGGTCAATT 59.443 47.619 11.06 0.00 40.29 2.32
2598 4899 1.134580 CAGAGAGACATGGCGGTCAAT 60.135 52.381 11.06 0.00 40.29 2.57
2599 4900 0.247460 CAGAGAGACATGGCGGTCAA 59.753 55.000 11.06 0.00 40.29 3.18
2600 4901 0.900182 ACAGAGAGACATGGCGGTCA 60.900 55.000 11.06 0.00 40.29 4.02
2601 4902 0.247736 AACAGAGAGACATGGCGGTC 59.752 55.000 0.00 0.00 38.08 4.79
2602 4903 0.247736 GAACAGAGAGACATGGCGGT 59.752 55.000 0.00 0.00 0.00 5.68
2603 4904 0.534412 AGAACAGAGAGACATGGCGG 59.466 55.000 0.00 0.00 0.00 6.13
2604 4905 2.094286 AGAAGAACAGAGAGACATGGCG 60.094 50.000 0.00 0.00 0.00 5.69
2606 4907 3.118811 GGGAGAAGAACAGAGAGACATGG 60.119 52.174 0.00 0.00 0.00 3.66
2607 4908 3.118811 GGGGAGAAGAACAGAGAGACATG 60.119 52.174 0.00 0.00 0.00 3.21
2608 4909 3.103742 GGGGAGAAGAACAGAGAGACAT 58.896 50.000 0.00 0.00 0.00 3.06
2609 4910 2.530701 GGGGAGAAGAACAGAGAGACA 58.469 52.381 0.00 0.00 0.00 3.41
2612 4913 0.820871 CGGGGGAGAAGAACAGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
2613 4914 0.408309 TCGGGGGAGAAGAACAGAGA 59.592 55.000 0.00 0.00 0.00 3.10
2615 4916 3.468552 TTCGGGGGAGAAGAACAGA 57.531 52.632 0.00 0.00 0.00 3.41
2622 4923 1.486145 GGTGTTCCTTCGGGGGAGAA 61.486 60.000 0.00 0.00 36.66 2.87
2624 4925 2.669240 GGTGTTCCTTCGGGGGAG 59.331 66.667 0.00 0.00 36.66 4.30
2626 4927 2.764637 CTTGGGTGTTCCTTCGGGGG 62.765 65.000 0.00 0.00 36.20 5.40
2627 4928 1.303317 CTTGGGTGTTCCTTCGGGG 60.303 63.158 0.00 0.00 36.20 5.73
2628 4929 1.303317 CCTTGGGTGTTCCTTCGGG 60.303 63.158 0.00 0.00 36.20 5.14
2629 4930 0.109723 TTCCTTGGGTGTTCCTTCGG 59.890 55.000 0.00 0.00 36.20 4.30
2630 4931 1.235724 GTTCCTTGGGTGTTCCTTCG 58.764 55.000 0.00 0.00 36.20 3.79
2632 4933 2.666317 CTTGTTCCTTGGGTGTTCCTT 58.334 47.619 0.00 0.00 36.20 3.36
2633 4934 1.133482 CCTTGTTCCTTGGGTGTTCCT 60.133 52.381 0.00 0.00 36.20 3.36
2634 4935 1.328279 CCTTGTTCCTTGGGTGTTCC 58.672 55.000 0.00 0.00 0.00 3.62
2635 4936 1.681264 CACCTTGTTCCTTGGGTGTTC 59.319 52.381 0.00 0.00 42.80 3.18
2636 4937 1.775385 CACCTTGTTCCTTGGGTGTT 58.225 50.000 0.00 0.00 42.80 3.32
2637 4938 3.513209 CACCTTGTTCCTTGGGTGT 57.487 52.632 0.00 0.00 42.80 4.16
2639 4940 1.528309 CGCACCTTGTTCCTTGGGT 60.528 57.895 0.00 0.00 0.00 4.51
2640 4941 2.268076 CCGCACCTTGTTCCTTGGG 61.268 63.158 0.00 0.00 0.00 4.12
2641 4942 2.919494 GCCGCACCTTGTTCCTTGG 61.919 63.158 0.00 0.00 0.00 3.61
2642 4943 2.192861 TGCCGCACCTTGTTCCTTG 61.193 57.895 0.00 0.00 0.00 3.61
2643 4944 2.193536 GTGCCGCACCTTGTTCCTT 61.194 57.895 12.80 0.00 0.00 3.36
2644 4945 2.594592 GTGCCGCACCTTGTTCCT 60.595 61.111 12.80 0.00 0.00 3.36
2679 4980 4.570663 CCCTAAGCCTCGCCGTCG 62.571 72.222 0.00 0.00 0.00 5.12
2680 4981 3.427598 GACCCTAAGCCTCGCCGTC 62.428 68.421 0.00 0.00 0.00 4.79
2681 4982 3.459063 GACCCTAAGCCTCGCCGT 61.459 66.667 0.00 0.00 0.00 5.68
2682 4983 3.432051 CTGACCCTAAGCCTCGCCG 62.432 68.421 0.00 0.00 0.00 6.46
2683 4984 1.900545 AACTGACCCTAAGCCTCGCC 61.901 60.000 0.00 0.00 0.00 5.54
2684 4985 0.036294 AAACTGACCCTAAGCCTCGC 60.036 55.000 0.00 0.00 0.00 5.03
2685 4986 1.676014 CCAAACTGACCCTAAGCCTCG 60.676 57.143 0.00 0.00 0.00 4.63
2686 4987 1.351350 ACCAAACTGACCCTAAGCCTC 59.649 52.381 0.00 0.00 0.00 4.70
2687 4988 1.446016 ACCAAACTGACCCTAAGCCT 58.554 50.000 0.00 0.00 0.00 4.58
2688 4989 1.886542 CAACCAAACTGACCCTAAGCC 59.113 52.381 0.00 0.00 0.00 4.35
2689 4990 2.858745 TCAACCAAACTGACCCTAAGC 58.141 47.619 0.00 0.00 0.00 3.09
2690 4991 3.821033 CCTTCAACCAAACTGACCCTAAG 59.179 47.826 0.00 0.00 0.00 2.18
2691 4992 3.827722 CCTTCAACCAAACTGACCCTAA 58.172 45.455 0.00 0.00 0.00 2.69
2692 4993 2.488347 GCCTTCAACCAAACTGACCCTA 60.488 50.000 0.00 0.00 0.00 3.53
2693 4994 1.754201 GCCTTCAACCAAACTGACCCT 60.754 52.381 0.00 0.00 0.00 4.34
2694 4995 0.673985 GCCTTCAACCAAACTGACCC 59.326 55.000 0.00 0.00 0.00 4.46
2695 4996 0.673985 GGCCTTCAACCAAACTGACC 59.326 55.000 0.00 0.00 0.00 4.02
2696 4997 1.338020 CAGGCCTTCAACCAAACTGAC 59.662 52.381 0.00 0.00 0.00 3.51
2697 4998 1.691196 CAGGCCTTCAACCAAACTGA 58.309 50.000 0.00 0.00 0.00 3.41
2698 4999 0.675633 CCAGGCCTTCAACCAAACTG 59.324 55.000 0.00 0.00 0.00 3.16
2699 5000 0.555769 TCCAGGCCTTCAACCAAACT 59.444 50.000 0.00 0.00 0.00 2.66
2700 5001 0.673985 GTCCAGGCCTTCAACCAAAC 59.326 55.000 0.00 0.00 0.00 2.93
2701 5002 0.260230 TGTCCAGGCCTTCAACCAAA 59.740 50.000 0.00 0.00 0.00 3.28
2704 5005 0.110486 TCTTGTCCAGGCCTTCAACC 59.890 55.000 0.00 0.00 0.00 3.77
2709 5010 1.000396 GGCATCTTGTCCAGGCCTT 60.000 57.895 0.00 0.00 41.39 4.35
2711 5012 1.751927 CAGGCATCTTGTCCAGGCC 60.752 63.158 0.00 0.00 44.92 5.19
2713 5014 0.329261 TTCCAGGCATCTTGTCCAGG 59.671 55.000 0.00 0.00 0.00 4.45
2715 5016 2.673775 TTTTCCAGGCATCTTGTCCA 57.326 45.000 0.00 0.00 0.00 4.02
2732 5033 2.397597 ACAACTGAGGCATGGGTTTTT 58.602 42.857 0.00 0.00 0.00 1.94
2735 5036 1.331214 CAACAACTGAGGCATGGGTT 58.669 50.000 0.00 0.00 0.00 4.11
2737 5038 0.251297 TCCAACAACTGAGGCATGGG 60.251 55.000 0.00 0.00 0.00 4.00
2738 5039 1.619654 TTCCAACAACTGAGGCATGG 58.380 50.000 0.00 0.00 0.00 3.66
2739 5040 3.947910 ATTTCCAACAACTGAGGCATG 57.052 42.857 0.00 0.00 0.00 4.06
2741 5042 4.038642 GGTAAATTTCCAACAACTGAGGCA 59.961 41.667 0.00 0.00 0.00 4.75
2742 5043 4.280929 AGGTAAATTTCCAACAACTGAGGC 59.719 41.667 0.00 0.00 0.00 4.70
2743 5044 5.278957 CCAGGTAAATTTCCAACAACTGAGG 60.279 44.000 4.80 0.00 0.00 3.86
2744 5045 5.301805 ACCAGGTAAATTTCCAACAACTGAG 59.698 40.000 4.80 0.00 0.00 3.35
2745 5046 5.205056 ACCAGGTAAATTTCCAACAACTGA 58.795 37.500 4.80 0.00 0.00 3.41
2746 5047 5.068460 TGACCAGGTAAATTTCCAACAACTG 59.932 40.000 0.00 0.00 0.00 3.16
2747 5048 5.205056 TGACCAGGTAAATTTCCAACAACT 58.795 37.500 0.00 0.00 0.00 3.16
2749 5050 4.586841 CCTGACCAGGTAAATTTCCAACAA 59.413 41.667 7.88 0.00 43.61 2.83
2750 5051 4.148838 CCTGACCAGGTAAATTTCCAACA 58.851 43.478 7.88 0.00 43.61 3.33
2751 5052 4.783764 CCTGACCAGGTAAATTTCCAAC 57.216 45.455 7.88 0.00 43.61 3.77
2782 5083 1.738144 AAACAAAAAGCGCACGCACG 61.738 50.000 18.24 2.97 44.88 5.34
2784 5085 0.456824 TGAAACAAAAAGCGCACGCA 60.457 45.000 18.24 0.00 44.88 5.24
2786 5087 0.570272 GGTGAAACAAAAAGCGCACG 59.430 50.000 11.47 0.00 39.98 5.34
2792 5352 1.202639 GGGCCAGGGTGAAACAAAAAG 60.203 52.381 4.39 0.00 39.98 2.27
2795 5355 0.758685 CAGGGCCAGGGTGAAACAAA 60.759 55.000 6.18 0.00 39.98 2.83
2798 5358 2.137177 TAGCAGGGCCAGGGTGAAAC 62.137 60.000 6.18 0.00 0.00 2.78
2799 5359 1.850289 TAGCAGGGCCAGGGTGAAA 60.850 57.895 6.18 0.00 0.00 2.69
2801 5361 3.009115 GTAGCAGGGCCAGGGTGA 61.009 66.667 6.18 0.00 0.00 4.02
2804 5364 4.496336 GCTGTAGCAGGGCCAGGG 62.496 72.222 6.18 0.00 41.59 4.45
2810 5370 2.352422 TGCAAGGCTGTAGCAGGG 59.648 61.111 6.18 0.00 44.36 4.45
2813 5373 1.968017 GCACTGCAAGGCTGTAGCA 60.968 57.895 6.18 8.87 44.36 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.