Multiple sequence alignment - TraesCS1A01G419500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G419500 chr1A 100.000 6849 0 0 1 6849 576344882 576351730 0.000000e+00 12648.0
1 TraesCS1A01G419500 chr1A 96.000 100 4 0 3431 3530 576348219 576348318 5.500000e-36 163.0
2 TraesCS1A01G419500 chr1A 96.000 100 4 0 3338 3437 576348312 576348411 5.500000e-36 163.0
3 TraesCS1A01G419500 chr1A 90.588 85 7 1 6764 6847 104216463 104216547 2.020000e-20 111.0
4 TraesCS1A01G419500 chr1A 89.412 85 9 0 6763 6847 11940813 11940897 2.610000e-19 108.0
5 TraesCS1A01G419500 chr1A 88.095 84 10 0 6764 6847 574637064 574636981 4.370000e-17 100.0
6 TraesCS1A01G419500 chr1A 92.857 56 4 0 6453 6508 576371774 576371829 1.580000e-11 82.4
7 TraesCS1A01G419500 chr1D 95.320 6261 224 39 1 6232 479870476 479876696 0.000000e+00 9875.0
8 TraesCS1A01G419500 chr1D 87.302 315 22 8 6454 6765 479888450 479888749 1.830000e-90 344.0
9 TraesCS1A01G419500 chr1D 83.562 219 20 6 3598 3801 479874249 479874466 2.520000e-44 191.0
10 TraesCS1A01G419500 chr1D 99.000 100 1 0 3338 3437 479873884 479873983 5.460000e-41 180.0
11 TraesCS1A01G419500 chr1D 91.765 85 6 1 6764 6847 101285232 101285148 4.340000e-22 117.0
12 TraesCS1A01G419500 chr1B 95.951 3482 128 9 542 4016 668121117 668124592 0.000000e+00 5637.0
13 TraesCS1A01G419500 chr1B 92.908 2256 117 23 3978 6202 668124590 668126833 0.000000e+00 3240.0
14 TraesCS1A01G419500 chr1B 87.336 458 33 16 1 433 668120629 668121086 1.030000e-137 501.0
15 TraesCS1A01G419500 chr1B 89.068 311 21 7 6448 6753 668127734 668128036 2.330000e-99 374.0
16 TraesCS1A01G419500 chr1B 83.099 213 21 5 3598 3795 668124369 668124581 5.460000e-41 180.0
17 TraesCS1A01G419500 chr1B 97.000 100 3 0 3338 3437 668124004 668124103 1.180000e-37 169.0
18 TraesCS1A01G419500 chr1B 96.000 100 4 0 3431 3530 668123911 668124010 5.500000e-36 163.0
19 TraesCS1A01G419500 chr1B 96.000 50 2 0 6232 6281 668126912 668126961 1.580000e-11 82.4
20 TraesCS1A01G419500 chr1B 97.222 36 0 1 451 486 668121087 668121121 7.420000e-05 60.2
21 TraesCS1A01G419500 chr4B 89.888 89 8 1 6760 6847 41531505 41531417 5.610000e-21 113.0
22 TraesCS1A01G419500 chr3D 88.043 92 7 2 6762 6849 64194862 64194771 9.390000e-19 106.0
23 TraesCS1A01G419500 chr7B 88.372 86 9 1 6763 6847 213249471 213249386 1.220000e-17 102.0
24 TraesCS1A01G419500 chr5D 88.235 85 9 1 6764 6847 281024874 281024790 4.370000e-17 100.0
25 TraesCS1A01G419500 chr6D 86.170 94 9 4 6757 6847 88776589 88776497 1.570000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G419500 chr1A 576344882 576351730 6848 False 4324.666667 12648 97.333333 1 6849 3 chr1A.!!$F4 6848
1 TraesCS1A01G419500 chr1D 479870476 479876696 6220 False 3415.333333 9875 92.627333 1 6232 3 chr1D.!!$F2 6231
2 TraesCS1A01G419500 chr1B 668120629 668128036 7407 False 1156.288889 5637 92.731556 1 6753 9 chr1B.!!$F1 6752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 593 1.210931 CTCGCATGGCCTTGTGTTG 59.789 57.895 26.21 18.11 0.00 3.33 F
1213 1245 2.074576 CTGTGACTGCCAATGTGAGAG 58.925 52.381 0.00 0.00 0.00 3.20 F
1519 1551 2.105821 CCAACTTCTGTTCACACCCCTA 59.894 50.000 0.00 0.00 33.52 3.53 F
3042 3074 1.005924 CAGGGTTCATTAGGGCCTGTT 59.994 52.381 18.53 0.00 0.00 3.16 F
3550 3582 0.250338 GGACGAGCCAACTTCCTGTT 60.250 55.000 0.00 0.00 39.92 3.16 F
3670 3702 0.661483 GGCGTGCAAAGAAGCAGAAC 60.661 55.000 0.00 0.00 46.69 3.01 F
4041 4112 0.786435 AAAGGCCATCCCCAGTTTCT 59.214 50.000 5.01 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1607 0.329261 CAGAACTGGGATTGGCCTCA 59.671 55.000 3.32 0.00 36.66 3.86 R
2058 2090 1.003580 GTGACAGGCTTTGATCTCCCA 59.996 52.381 0.00 0.00 0.00 4.37 R
3439 3471 1.969208 TGCACTGCCCATTTCATCAAA 59.031 42.857 0.00 0.00 0.00 2.69 R
4041 4112 1.768275 TCTTTTCCTGACACCTCAGCA 59.232 47.619 0.00 0.00 42.55 4.41 R
5479 5559 0.473326 GCTCCAAGGATCTGCCAGAT 59.527 55.000 6.98 6.98 37.73 2.90 R
5514 5596 0.528684 GATCTGTGAGCGGTACTGGC 60.529 60.000 3.34 2.49 0.00 4.85 R
5994 6086 0.457851 CTCTTTCATCCGAGACCGCT 59.542 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.966246 TGTGTAACATTAATGTAGTCGGTTT 57.034 32.000 21.07 6.00 45.67 3.27
83 84 3.984633 GGTTATCTTGATGAGCTCTACGC 59.015 47.826 16.19 2.15 39.57 4.42
224 252 6.749118 GTCTGTGATCAACCTATGCATTTTTC 59.251 38.462 3.54 0.00 0.00 2.29
227 255 7.315142 TGTGATCAACCTATGCATTTTTCTTC 58.685 34.615 3.54 0.00 0.00 2.87
232 260 8.181904 TCAACCTATGCATTTTTCTTCTTCTT 57.818 30.769 3.54 0.00 0.00 2.52
233 261 8.084073 TCAACCTATGCATTTTTCTTCTTCTTG 58.916 33.333 3.54 0.00 0.00 3.02
234 262 7.530426 ACCTATGCATTTTTCTTCTTCTTGT 57.470 32.000 3.54 0.00 0.00 3.16
236 264 7.231317 ACCTATGCATTTTTCTTCTTCTTGTGA 59.769 33.333 3.54 0.00 0.00 3.58
237 265 7.754027 CCTATGCATTTTTCTTCTTCTTGTGAG 59.246 37.037 3.54 0.00 0.00 3.51
238 266 5.284079 TGCATTTTTCTTCTTCTTGTGAGC 58.716 37.500 0.00 0.00 0.00 4.26
357 385 5.900437 TGGGGGTTATACCAATTGTGTTAA 58.100 37.500 4.43 0.00 41.02 2.01
406 434 9.341899 GGTGGCATCTTAATATAAAATTTAGCG 57.658 33.333 0.00 0.00 0.00 4.26
430 458 8.974408 GCGTACATGTTGATATATGTTTCTACA 58.026 33.333 2.30 0.87 37.32 2.74
510 538 1.338105 TGGACACTTCAGAATCTGGCG 60.338 52.381 10.71 4.44 31.51 5.69
516 544 4.159693 ACACTTCAGAATCTGGCGTGTATA 59.840 41.667 25.34 0.00 40.47 1.47
565 593 1.210931 CTCGCATGGCCTTGTGTTG 59.789 57.895 26.21 18.11 0.00 3.33
584 613 6.072508 TGTGTTGAGAATTGCTTAGACATTCC 60.073 38.462 0.00 0.00 0.00 3.01
586 615 6.372659 TGTTGAGAATTGCTTAGACATTCCTC 59.627 38.462 0.00 0.00 0.00 3.71
627 656 8.056400 TGGTGCCAAACTATATTATGTAAAGGT 58.944 33.333 0.00 0.00 0.00 3.50
628 657 9.563748 GGTGCCAAACTATATTATGTAAAGGTA 57.436 33.333 0.00 0.00 0.00 3.08
656 685 6.318913 AGATAGTTCCTCTGTGTATAGCCAT 58.681 40.000 0.00 0.00 0.00 4.40
1213 1245 2.074576 CTGTGACTGCCAATGTGAGAG 58.925 52.381 0.00 0.00 0.00 3.20
1275 1307 2.982488 ACCAGAATGTCCACCTCTTTCT 59.018 45.455 0.00 0.00 32.24 2.52
1295 1327 4.797471 TCTGAAAATGTTTCTGCGAATGG 58.203 39.130 2.68 0.00 0.00 3.16
1380 1412 5.843969 TGCATTTATGAGGGTATCTACTCCA 59.156 40.000 0.00 0.00 32.80 3.86
1466 1498 4.989279 AGAAAGAAAGTGCAGCAAAAGA 57.011 36.364 0.00 0.00 0.00 2.52
1519 1551 2.105821 CCAACTTCTGTTCACACCCCTA 59.894 50.000 0.00 0.00 33.52 3.53
1575 1607 4.701765 CTGATGCTGCCTTGTCTAATACT 58.298 43.478 0.00 0.00 0.00 2.12
1697 1729 6.856426 GGTGACAGTTTTAAAATTCGGAAGAG 59.144 38.462 3.52 0.00 43.69 2.85
1785 1817 9.874205 TTTGAAGAAAATCTGTCAGTGAAAAAT 57.126 25.926 0.00 0.00 0.00 1.82
1793 1825 4.036734 TCTGTCAGTGAAAAATCCAGCAAC 59.963 41.667 0.00 0.00 0.00 4.17
1798 1830 4.980434 CAGTGAAAAATCCAGCAACTGAAG 59.020 41.667 0.00 0.00 32.44 3.02
1852 1884 2.942376 CACCAACAAGTTAGTGCAGTCA 59.058 45.455 0.00 0.00 0.00 3.41
2058 2090 6.152661 CAGTCAGAGAGAAGGAAGATAACTGT 59.847 42.308 0.00 0.00 0.00 3.55
2060 2092 5.420421 TCAGAGAGAAGGAAGATAACTGTGG 59.580 44.000 0.00 0.00 0.00 4.17
2199 2231 5.009610 CGATTTGGGAGTGAAAGAGGAAAAA 59.990 40.000 0.00 0.00 0.00 1.94
2254 2286 2.599677 GGGAGGATAGGGTGTCTACAG 58.400 57.143 0.00 0.00 0.00 2.74
2273 2305 4.962155 ACAGTTCTGGAAACTTCTACAGG 58.038 43.478 4.82 0.00 0.00 4.00
2886 2918 2.036475 ACACGCACATTCTGAAGAGTCT 59.964 45.455 0.00 0.00 0.00 3.24
2973 3005 3.002791 AGTATCAACCATGCTGAACGTG 58.997 45.455 0.00 0.00 34.83 4.49
3042 3074 1.005924 CAGGGTTCATTAGGGCCTGTT 59.994 52.381 18.53 0.00 0.00 3.16
3179 3211 6.067350 AGTCAGCTCATGATACTGATAGACA 58.933 40.000 23.79 5.59 42.08 3.41
3234 3266 3.054361 ACTCCACCTCAGAAAACAGTGTT 60.054 43.478 1.64 1.64 0.00 3.32
3390 3422 4.381079 GCGAGTTCTGGAGATGAAGTTACT 60.381 45.833 0.00 0.00 0.00 2.24
3439 3471 8.956426 CCACCAGATTAACAGTAAATACAACAT 58.044 33.333 0.00 0.00 0.00 2.71
3481 3513 2.670414 GCGAGTTCTGGAGATGAAGTTG 59.330 50.000 0.00 0.00 33.54 3.16
3550 3582 0.250338 GGACGAGCCAACTTCCTGTT 60.250 55.000 0.00 0.00 39.92 3.16
3583 3615 2.290896 ACTGGCTTGCAGCAATTACCTA 60.291 45.455 8.67 2.04 44.75 3.08
3670 3702 0.661483 GGCGTGCAAAGAAGCAGAAC 60.661 55.000 0.00 0.00 46.69 3.01
3772 3804 3.193267 GGCAGAACCAAAGCATCAACATA 59.807 43.478 0.00 0.00 38.86 2.29
3806 3838 4.103365 AGATTGACAGTGCTACTTCTCG 57.897 45.455 0.00 0.00 0.00 4.04
3830 3862 6.094048 CGGACATCTTATGAAAATGTTCCTGT 59.906 38.462 0.00 0.00 33.91 4.00
3896 3928 8.109634 AGAATTACCCACAGAAAGATGTACAAT 58.890 33.333 0.00 0.00 0.00 2.71
3900 3932 7.865706 ACCCACAGAAAGATGTACAATATTC 57.134 36.000 0.00 4.78 0.00 1.75
3903 3938 7.042456 CCCACAGAAAGATGTACAATATTCGAG 60.042 40.741 0.00 5.90 0.00 4.04
3938 3973 7.180229 CAGGGTAAATAAAATGGAAGGAAAGGT 59.820 37.037 0.00 0.00 0.00 3.50
3959 3994 9.445973 AAAGGTCTCTAGAGAAAGGATATCAAT 57.554 33.333 23.96 0.00 39.48 2.57
4041 4112 0.786435 AAAGGCCATCCCCAGTTTCT 59.214 50.000 5.01 0.00 0.00 2.52
4092 4163 3.325135 GGGTTCAGAGAACCAAAGAGAGA 59.675 47.826 25.28 0.00 42.03 3.10
4175 4246 5.111989 AGAAGCAAAAGAAAGGCAAAAGAC 58.888 37.500 0.00 0.00 0.00 3.01
4190 4261 6.042437 AGGCAAAAGACATTGGAGAAAGAAAT 59.958 34.615 0.00 0.00 0.00 2.17
4200 4271 8.810041 ACATTGGAGAAAGAAATAGAAAATGCT 58.190 29.630 0.00 0.00 0.00 3.79
4208 4279 9.683069 GAAAGAAATAGAAAATGCTGAAGTCAA 57.317 29.630 0.00 0.00 0.00 3.18
4215 4286 7.281040 AGAAAATGCTGAAGTCAATGAAAGA 57.719 32.000 0.00 0.00 0.00 2.52
4419 4490 1.181098 GGCAAAGGGCTTCTGCAGAA 61.181 55.000 26.87 26.87 44.01 3.02
4770 4846 1.073284 GAGGGCAACTTCCAGTGGTTA 59.927 52.381 9.54 0.00 36.51 2.85
4835 4911 4.397730 TCCACATATTTTGTTGTAGCGCAT 59.602 37.500 11.47 0.00 36.00 4.73
4885 4962 4.944962 TGCAATCTATGTTCCTCAAACG 57.055 40.909 0.00 0.00 41.02 3.60
4888 4965 5.647658 TGCAATCTATGTTCCTCAAACGAAT 59.352 36.000 0.00 0.00 41.02 3.34
5096 5173 9.372369 CTAGTTCTACTTCTGTATCCTTTTTGG 57.628 37.037 0.00 0.00 37.10 3.28
5232 5309 4.836125 ACGCATTGTCAGAAGAACAATT 57.164 36.364 0.00 0.00 32.45 2.32
5241 5318 5.163311 TGTCAGAAGAACAATTCTCTCACCA 60.163 40.000 0.00 0.00 39.61 4.17
5265 5343 5.426185 ACATCCACATTTTTATTCATGGCCT 59.574 36.000 3.32 0.00 0.00 5.19
5389 5467 1.079057 TGCAATACGTAAGCCGCCA 60.079 52.632 17.39 0.38 45.62 5.69
5397 5475 1.338655 ACGTAAGCCGCCATTTGTTTT 59.661 42.857 0.00 0.00 45.62 2.43
5418 5496 4.806640 TGAGCATCACACATCTGTAGAA 57.193 40.909 0.00 0.00 42.56 2.10
5420 5498 3.866651 AGCATCACACATCTGTAGAACC 58.133 45.455 0.00 0.00 0.00 3.62
5421 5499 2.939103 GCATCACACATCTGTAGAACCC 59.061 50.000 0.00 0.00 0.00 4.11
5426 5504 5.977635 TCACACATCTGTAGAACCCTTATG 58.022 41.667 0.00 0.00 0.00 1.90
5433 5511 7.071196 ACATCTGTAGAACCCTTATGCAGATAA 59.929 37.037 9.07 0.00 39.34 1.75
5437 5515 8.313944 TGTAGAACCCTTATGCAGATAAGTAA 57.686 34.615 6.38 0.00 39.63 2.24
5438 5516 8.202137 TGTAGAACCCTTATGCAGATAAGTAAC 58.798 37.037 6.38 0.00 39.63 2.50
5439 5517 6.281405 AGAACCCTTATGCAGATAAGTAACG 58.719 40.000 6.38 0.00 39.63 3.18
5440 5518 4.957296 ACCCTTATGCAGATAAGTAACGG 58.043 43.478 6.38 3.47 39.63 4.44
5441 5519 4.652421 ACCCTTATGCAGATAAGTAACGGA 59.348 41.667 6.38 0.00 39.63 4.69
5447 5527 3.871006 TGCAGATAAGTAACGGAATGCAG 59.129 43.478 0.00 0.00 37.50 4.41
5449 5529 4.570772 GCAGATAAGTAACGGAATGCAGAA 59.429 41.667 0.00 0.00 32.79 3.02
5450 5530 5.502544 GCAGATAAGTAACGGAATGCAGAAC 60.503 44.000 0.00 0.00 32.79 3.01
5452 5532 5.812642 AGATAAGTAACGGAATGCAGAACAG 59.187 40.000 0.00 0.00 0.00 3.16
5462 5542 6.017605 ACGGAATGCAGAACAGAAATATCATC 60.018 38.462 0.00 0.00 0.00 2.92
5465 5545 5.973651 TGCAGAACAGAAATATCATCGTC 57.026 39.130 0.00 0.00 0.00 4.20
5466 5546 5.664457 TGCAGAACAGAAATATCATCGTCT 58.336 37.500 0.00 0.00 0.00 4.18
5468 5548 7.264947 TGCAGAACAGAAATATCATCGTCTTA 58.735 34.615 0.00 0.00 0.00 2.10
5469 5549 7.928167 TGCAGAACAGAAATATCATCGTCTTAT 59.072 33.333 0.00 0.00 0.00 1.73
5526 5608 4.082523 TGGCAGCCAGTACCGCTC 62.083 66.667 11.22 0.00 33.17 5.03
5529 5611 2.656646 CAGCCAGTACCGCTCACA 59.343 61.111 2.12 0.00 33.17 3.58
5583 5665 1.115930 ACAGGAAGGCGACTCTGTGT 61.116 55.000 11.62 2.76 42.19 3.72
5595 5677 2.499289 GACTCTGTGTGTCCATCCAGAT 59.501 50.000 0.00 0.00 33.77 2.90
5675 5758 5.038033 CGATCTTCTAAAGGTCTGTGCTAC 58.962 45.833 0.00 0.00 36.47 3.58
5691 5774 1.404315 GCTACGCTACTTGGAACAGCT 60.404 52.381 0.00 0.00 42.39 4.24
5719 5802 1.001860 GCTCCAGTCTGACTTTCTGCT 59.998 52.381 7.77 0.00 0.00 4.24
5788 5871 6.452611 GCATTCGAACGTCACTTCTTAACTAG 60.453 42.308 0.00 0.00 0.00 2.57
5791 5874 6.593978 TCGAACGTCACTTCTTAACTAGTAC 58.406 40.000 0.00 0.00 0.00 2.73
5803 5886 7.792374 TCTTAACTAGTACGACCGTCATATT 57.208 36.000 0.00 0.00 0.00 1.28
5804 5887 8.213518 TCTTAACTAGTACGACCGTCATATTT 57.786 34.615 0.00 0.00 0.00 1.40
5845 5928 3.068691 TTCACCTCGGAGGAGCGG 61.069 66.667 30.13 15.45 37.67 5.52
5965 6056 0.739561 CAGCTCGGTCTAGGTACCAC 59.260 60.000 15.94 3.19 39.71 4.16
5966 6057 0.395448 AGCTCGGTCTAGGTACCACC 60.395 60.000 15.94 12.23 39.71 4.61
5967 6058 0.682209 GCTCGGTCTAGGTACCACCA 60.682 60.000 15.94 3.66 41.95 4.17
5994 6086 9.859152 TTCTAGATGATGATAGAAGACTCTGAA 57.141 33.333 0.00 0.00 34.02 3.02
6005 6097 1.303398 ACTCTGAAGCGGTCTCGGA 60.303 57.895 0.00 0.00 36.79 4.55
6086 6186 5.124645 GGTAGCAGTCTAGTCTAGTAGCAA 58.875 45.833 17.08 0.00 0.00 3.91
6130 6238 6.430925 TGATTGTGGTGGAGTTGAAGATTAAG 59.569 38.462 0.00 0.00 0.00 1.85
6172 6281 4.753516 TCTTGTCTCTGGTTGAGTTTGA 57.246 40.909 0.00 0.00 43.13 2.69
6187 6296 5.200483 TGAGTTTGAGATGAAAGTTGGGTT 58.800 37.500 0.00 0.00 0.00 4.11
6189 6298 4.342092 AGTTTGAGATGAAAGTTGGGTTGG 59.658 41.667 0.00 0.00 0.00 3.77
6191 6300 1.200020 GAGATGAAAGTTGGGTTGGCG 59.800 52.381 0.00 0.00 0.00 5.69
6202 6311 1.228033 GGTTGGCGGTGTTGGTAGT 60.228 57.895 0.00 0.00 0.00 2.73
6203 6312 0.035176 GGTTGGCGGTGTTGGTAGTA 59.965 55.000 0.00 0.00 0.00 1.82
6204 6313 1.435577 GTTGGCGGTGTTGGTAGTAG 58.564 55.000 0.00 0.00 0.00 2.57
6205 6314 1.001181 GTTGGCGGTGTTGGTAGTAGA 59.999 52.381 0.00 0.00 0.00 2.59
6212 6321 3.270877 GGTGTTGGTAGTAGATGGCAAG 58.729 50.000 0.00 0.00 0.00 4.01
6219 6328 0.824759 AGTAGATGGCAAGGTCGACC 59.175 55.000 27.67 27.67 0.00 4.79
6274 6435 0.397187 CATGAGGCCATCAGGAGGAG 59.603 60.000 5.01 0.00 42.40 3.69
6277 6438 1.074623 AGGCCATCAGGAGGAGAGG 60.075 63.158 5.01 0.00 36.89 3.69
6281 6442 1.703411 CCATCAGGAGGAGAGGAGTC 58.297 60.000 0.00 0.00 36.89 3.36
6283 6444 0.467290 ATCAGGAGGAGAGGAGTCGC 60.467 60.000 0.00 0.00 0.00 5.19
6284 6445 2.124693 CAGGAGGAGAGGAGTCGCC 61.125 68.421 0.00 0.00 42.86 5.54
6293 6454 3.681909 AGGAGTCGCCTCTCTCTTT 57.318 52.632 0.00 0.00 46.97 2.52
6295 6456 0.459411 GGAGTCGCCTCTCTCTTTGC 60.459 60.000 0.00 0.00 37.86 3.68
6296 6457 0.459411 GAGTCGCCTCTCTCTTTGCC 60.459 60.000 0.00 0.00 34.69 4.52
6297 6458 1.448717 GTCGCCTCTCTCTTTGCCC 60.449 63.158 0.00 0.00 0.00 5.36
6299 6460 1.222936 CGCCTCTCTCTTTGCCCAT 59.777 57.895 0.00 0.00 0.00 4.00
6300 6461 0.393537 CGCCTCTCTCTTTGCCCATT 60.394 55.000 0.00 0.00 0.00 3.16
6301 6462 1.101331 GCCTCTCTCTTTGCCCATTG 58.899 55.000 0.00 0.00 0.00 2.82
6302 6463 1.615384 GCCTCTCTCTTTGCCCATTGT 60.615 52.381 0.00 0.00 0.00 2.71
6303 6464 2.800250 CCTCTCTCTTTGCCCATTGTT 58.200 47.619 0.00 0.00 0.00 2.83
6304 6465 3.160269 CCTCTCTCTTTGCCCATTGTTT 58.840 45.455 0.00 0.00 0.00 2.83
6305 6466 3.192212 CCTCTCTCTTTGCCCATTGTTTC 59.808 47.826 0.00 0.00 0.00 2.78
6306 6467 4.077822 CTCTCTCTTTGCCCATTGTTTCT 58.922 43.478 0.00 0.00 0.00 2.52
6307 6468 5.241403 TCTCTCTTTGCCCATTGTTTCTA 57.759 39.130 0.00 0.00 0.00 2.10
6308 6469 5.003804 TCTCTCTTTGCCCATTGTTTCTAC 58.996 41.667 0.00 0.00 0.00 2.59
6309 6470 4.079253 TCTCTTTGCCCATTGTTTCTACC 58.921 43.478 0.00 0.00 0.00 3.18
6313 6474 1.339631 TGCCCATTGTTTCTACCTCCG 60.340 52.381 0.00 0.00 0.00 4.63
6314 6475 2.017113 GCCCATTGTTTCTACCTCCGG 61.017 57.143 0.00 0.00 0.00 5.14
6315 6476 1.280998 CCCATTGTTTCTACCTCCGGT 59.719 52.381 0.00 0.00 40.16 5.28
6316 6477 2.356135 CCATTGTTTCTACCTCCGGTG 58.644 52.381 0.00 0.00 36.19 4.94
6317 6478 2.356135 CATTGTTTCTACCTCCGGTGG 58.644 52.381 21.02 21.02 36.19 4.61
6319 6480 1.122632 TGTTTCTACCTCCGGTGGCA 61.123 55.000 22.46 9.03 36.19 4.92
6320 6481 0.035739 GTTTCTACCTCCGGTGGCAA 59.964 55.000 22.46 10.04 36.19 4.52
6321 6482 0.766131 TTTCTACCTCCGGTGGCAAA 59.234 50.000 22.46 15.06 36.19 3.68
6322 6483 0.035739 TTCTACCTCCGGTGGCAAAC 59.964 55.000 22.46 0.00 36.19 2.93
6323 6484 1.122632 TCTACCTCCGGTGGCAAACA 61.123 55.000 22.46 2.23 36.19 2.83
6334 6495 3.949855 GCAAACACCGCCATTTGG 58.050 55.556 0.00 0.00 36.51 3.28
6335 6496 1.365633 GCAAACACCGCCATTTGGA 59.634 52.632 0.00 0.00 36.51 3.53
6336 6497 0.667184 GCAAACACCGCCATTTGGAG 60.667 55.000 0.00 0.00 36.51 3.86
6343 6504 3.376218 CGCCATTTGGAGGAGAGAG 57.624 57.895 0.00 0.00 37.39 3.20
6344 6505 0.813210 CGCCATTTGGAGGAGAGAGC 60.813 60.000 0.00 0.00 37.39 4.09
6345 6506 0.813210 GCCATTTGGAGGAGAGAGCG 60.813 60.000 0.00 0.00 37.39 5.03
6346 6507 0.539051 CCATTTGGAGGAGAGAGCGT 59.461 55.000 0.00 0.00 37.39 5.07
6347 6508 1.472376 CCATTTGGAGGAGAGAGCGTC 60.472 57.143 0.00 0.00 37.39 5.19
6348 6509 0.827368 ATTTGGAGGAGAGAGCGTCC 59.173 55.000 0.00 0.00 41.88 4.79
6350 6511 1.076727 TGGAGGAGAGAGCGTCCAA 59.923 57.895 0.00 0.00 46.44 3.53
6351 6512 0.541998 TGGAGGAGAGAGCGTCCAAA 60.542 55.000 0.00 0.00 46.44 3.28
6352 6513 0.174617 GGAGGAGAGAGCGTCCAAAG 59.825 60.000 0.00 0.00 41.33 2.77
6353 6514 1.178276 GAGGAGAGAGCGTCCAAAGA 58.822 55.000 0.00 0.00 36.43 2.52
6354 6515 1.134175 GAGGAGAGAGCGTCCAAAGAG 59.866 57.143 0.00 0.00 36.43 2.85
6355 6516 0.892063 GGAGAGAGCGTCCAAAGAGT 59.108 55.000 0.00 0.00 33.84 3.24
6356 6517 1.135228 GGAGAGAGCGTCCAAAGAGTC 60.135 57.143 0.00 0.00 33.84 3.36
6357 6518 0.523966 AGAGAGCGTCCAAAGAGTCG 59.476 55.000 0.00 0.00 0.00 4.18
6378 6539 2.031682 GCTTCTCTCTTTGCGCTTCAAA 60.032 45.455 9.73 0.00 42.01 2.69
6380 6541 4.401714 CTTCTCTCTTTGCGCTTCAAATC 58.598 43.478 9.73 0.00 43.14 2.17
6381 6542 3.668447 TCTCTCTTTGCGCTTCAAATCT 58.332 40.909 9.73 0.00 43.14 2.40
6385 6546 4.275689 TCTCTTTGCGCTTCAAATCTTTCA 59.724 37.500 9.73 0.00 43.14 2.69
6391 6552 6.735419 TTTGCGCTTCAAATCTTTCAGAATGA 60.735 34.615 9.73 1.38 40.91 2.57
6392 6553 8.159075 TTTGCGCTTCAAATCTTTCAGAATGAA 61.159 33.333 9.73 0.23 45.60 2.57
6445 7163 2.466982 CGCCGATGATGCAGTTGCT 61.467 57.895 5.62 0.00 42.66 3.91
6446 7164 1.063649 GCCGATGATGCAGTTGCTG 59.936 57.895 5.62 0.00 42.66 4.41
6485 7280 0.096628 CGTCCTCGGTCTCGTACAAG 59.903 60.000 0.00 0.00 37.69 3.16
6487 7282 1.130186 GTCCTCGGTCTCGTACAAGTC 59.870 57.143 0.00 0.00 37.69 3.01
6490 7285 0.603707 TCGGTCTCGTACAAGTCCGT 60.604 55.000 17.13 0.00 44.76 4.69
6498 7293 1.082117 GTACAAGTCCGTGCCCATCG 61.082 60.000 0.00 0.00 0.00 3.84
6500 7295 2.100631 CAAGTCCGTGCCCATCGTC 61.101 63.158 0.00 0.00 0.00 4.20
6501 7296 3.642778 AAGTCCGTGCCCATCGTCG 62.643 63.158 0.00 0.00 0.00 5.12
6502 7297 4.430765 GTCCGTGCCCATCGTCGT 62.431 66.667 0.00 0.00 0.00 4.34
6503 7298 4.124351 TCCGTGCCCATCGTCGTC 62.124 66.667 0.00 0.00 0.00 4.20
6521 7316 3.693245 GCGTCGCGTTCATCTCAT 58.307 55.556 5.77 0.00 0.00 2.90
6548 7343 5.718977 ATGGTTAGAATCCAAGGCAATGCC 61.719 45.833 18.04 18.04 41.99 4.40
6579 7376 8.421249 AATTTTCCTATGGTTGACAAATCTGA 57.579 30.769 0.00 0.00 0.00 3.27
6581 7378 7.452880 TTTCCTATGGTTGACAAATCTGAAG 57.547 36.000 0.00 0.00 0.00 3.02
6584 7381 3.988379 TGGTTGACAAATCTGAAGTGC 57.012 42.857 0.00 0.00 0.00 4.40
6660 7457 7.628794 GCAGCTCATCTCATTCTTCATTTCTTT 60.629 37.037 0.00 0.00 0.00 2.52
6681 7478 9.669353 TTCTTTCAAGAAAAATCTCATTCTTCG 57.331 29.630 0.00 0.00 42.41 3.79
6684 7481 8.786937 TTCAAGAAAAATCTCATTCTTCGTTG 57.213 30.769 0.00 0.00 42.41 4.10
6702 7499 0.698238 TGCCCTTATGCAACAGAGGT 59.302 50.000 0.00 0.00 38.56 3.85
6703 7500 1.075374 TGCCCTTATGCAACAGAGGTT 59.925 47.619 0.00 0.00 38.56 3.50
6723 7522 2.571212 TGAAAGTTGGTACCTGCACAG 58.429 47.619 14.36 0.00 0.00 3.66
6726 7525 2.256117 AGTTGGTACCTGCACAGTTC 57.744 50.000 14.36 0.00 0.00 3.01
6740 7539 4.571984 TGCACAGTTCATCTAATTCCATCG 59.428 41.667 0.00 0.00 0.00 3.84
6754 7553 3.334583 TCCATCGAGAGGAACAAAAGG 57.665 47.619 6.91 0.00 30.71 3.11
6755 7554 1.740025 CCATCGAGAGGAACAAAAGGC 59.260 52.381 0.47 0.00 0.00 4.35
6756 7555 2.616510 CCATCGAGAGGAACAAAAGGCT 60.617 50.000 0.47 0.00 0.00 4.58
6757 7556 2.930826 TCGAGAGGAACAAAAGGCTT 57.069 45.000 0.00 0.00 0.00 4.35
6758 7557 3.208747 TCGAGAGGAACAAAAGGCTTT 57.791 42.857 6.68 6.68 0.00 3.51
6759 7558 2.878406 TCGAGAGGAACAAAAGGCTTTG 59.122 45.455 14.19 10.18 46.26 2.77
6760 7559 2.878406 CGAGAGGAACAAAAGGCTTTGA 59.122 45.455 14.19 0.00 44.03 2.69
6761 7560 3.503748 CGAGAGGAACAAAAGGCTTTGAT 59.496 43.478 14.19 1.55 44.03 2.57
6762 7561 4.378874 CGAGAGGAACAAAAGGCTTTGATC 60.379 45.833 14.19 11.60 44.03 2.92
6763 7562 4.734266 AGAGGAACAAAAGGCTTTGATCT 58.266 39.130 14.19 7.92 44.03 2.75
6764 7563 5.880901 AGAGGAACAAAAGGCTTTGATCTA 58.119 37.500 14.19 0.00 44.03 1.98
6765 7564 5.707764 AGAGGAACAAAAGGCTTTGATCTAC 59.292 40.000 14.19 9.84 44.03 2.59
6766 7565 5.635120 AGGAACAAAAGGCTTTGATCTACT 58.365 37.500 14.19 5.49 44.03 2.57
6767 7566 5.707764 AGGAACAAAAGGCTTTGATCTACTC 59.292 40.000 14.19 3.98 44.03 2.59
6768 7567 5.106118 GGAACAAAAGGCTTTGATCTACTCC 60.106 44.000 14.19 9.03 44.03 3.85
6769 7568 4.336280 ACAAAAGGCTTTGATCTACTCCC 58.664 43.478 14.19 0.00 44.03 4.30
6770 7569 4.043435 ACAAAAGGCTTTGATCTACTCCCT 59.957 41.667 14.19 0.00 44.03 4.20
6771 7570 4.495690 AAAGGCTTTGATCTACTCCCTC 57.504 45.455 12.53 0.00 0.00 4.30
6772 7571 3.413105 AGGCTTTGATCTACTCCCTCT 57.587 47.619 0.00 0.00 0.00 3.69
6773 7572 3.037549 AGGCTTTGATCTACTCCCTCTG 58.962 50.000 0.00 0.00 0.00 3.35
6774 7573 2.769095 GGCTTTGATCTACTCCCTCTGT 59.231 50.000 0.00 0.00 0.00 3.41
6775 7574 3.961408 GGCTTTGATCTACTCCCTCTGTA 59.039 47.826 0.00 0.00 0.00 2.74
6776 7575 4.406003 GGCTTTGATCTACTCCCTCTGTAA 59.594 45.833 0.00 0.00 0.00 2.41
6777 7576 5.353111 GCTTTGATCTACTCCCTCTGTAAC 58.647 45.833 0.00 0.00 0.00 2.50
6778 7577 5.105310 GCTTTGATCTACTCCCTCTGTAACA 60.105 44.000 0.00 0.00 0.00 2.41
6779 7578 6.574465 GCTTTGATCTACTCCCTCTGTAACAA 60.574 42.308 0.00 0.00 0.00 2.83
6780 7579 6.928348 TTGATCTACTCCCTCTGTAACAAA 57.072 37.500 0.00 0.00 0.00 2.83
6781 7580 6.928348 TGATCTACTCCCTCTGTAACAAAA 57.072 37.500 0.00 0.00 0.00 2.44
6782 7581 7.496346 TGATCTACTCCCTCTGTAACAAAAT 57.504 36.000 0.00 0.00 0.00 1.82
6783 7582 8.603898 TGATCTACTCCCTCTGTAACAAAATA 57.396 34.615 0.00 0.00 0.00 1.40
6784 7583 8.696374 TGATCTACTCCCTCTGTAACAAAATAG 58.304 37.037 0.00 0.00 0.00 1.73
6785 7584 8.840200 ATCTACTCCCTCTGTAACAAAATAGA 57.160 34.615 0.00 0.00 0.00 1.98
6786 7585 8.660295 TCTACTCCCTCTGTAACAAAATAGAA 57.340 34.615 0.00 0.00 0.00 2.10
6787 7586 9.096823 TCTACTCCCTCTGTAACAAAATAGAAA 57.903 33.333 0.00 0.00 0.00 2.52
6788 7587 9.720769 CTACTCCCTCTGTAACAAAATAGAAAA 57.279 33.333 0.00 0.00 0.00 2.29
6789 7588 8.392372 ACTCCCTCTGTAACAAAATAGAAAAC 57.608 34.615 0.00 0.00 0.00 2.43
6790 7589 7.172703 ACTCCCTCTGTAACAAAATAGAAAACG 59.827 37.037 0.00 0.00 0.00 3.60
6791 7590 6.993902 TCCCTCTGTAACAAAATAGAAAACGT 59.006 34.615 0.00 0.00 0.00 3.99
6792 7591 7.499895 TCCCTCTGTAACAAAATAGAAAACGTT 59.500 33.333 0.00 0.00 0.00 3.99
6793 7592 8.132995 CCCTCTGTAACAAAATAGAAAACGTTT 58.867 33.333 7.96 7.96 0.00 3.60
6794 7593 9.511144 CCTCTGTAACAAAATAGAAAACGTTTT 57.489 29.630 25.46 25.46 0.00 2.43
6820 7619 8.524870 TTAGACTAAACTAGCCTACAAAAACG 57.475 34.615 0.00 0.00 0.00 3.60
6821 7620 6.519382 AGACTAAACTAGCCTACAAAAACGT 58.481 36.000 0.00 0.00 0.00 3.99
6822 7621 6.644181 AGACTAAACTAGCCTACAAAAACGTC 59.356 38.462 0.00 0.00 0.00 4.34
6823 7622 6.519382 ACTAAACTAGCCTACAAAAACGTCT 58.481 36.000 0.00 0.00 0.00 4.18
6824 7623 6.988580 ACTAAACTAGCCTACAAAAACGTCTT 59.011 34.615 0.00 0.00 0.00 3.01
6825 7624 8.143835 ACTAAACTAGCCTACAAAAACGTCTTA 58.856 33.333 0.00 0.00 0.00 2.10
6826 7625 7.974482 AAACTAGCCTACAAAAACGTCTTAT 57.026 32.000 0.00 0.00 0.00 1.73
6828 7627 9.662947 AAACTAGCCTACAAAAACGTCTTATAT 57.337 29.630 0.00 0.00 0.00 0.86
6829 7628 9.662947 AACTAGCCTACAAAAACGTCTTATATT 57.337 29.630 0.00 0.00 0.00 1.28
6830 7629 9.662947 ACTAGCCTACAAAAACGTCTTATATTT 57.337 29.630 0.00 0.00 0.00 1.40
6833 7632 9.005777 AGCCTACAAAAACGTCTTATATTTTGA 57.994 29.630 21.46 9.08 42.48 2.69
6834 7633 9.058424 GCCTACAAAAACGTCTTATATTTTGAC 57.942 33.333 21.46 8.84 42.48 3.18
6837 7636 8.483743 ACAAAAACGTCTTATATTTTGACACG 57.516 30.769 21.46 2.22 42.48 4.49
6838 7637 7.588488 ACAAAAACGTCTTATATTTTGACACGG 59.412 33.333 21.46 1.66 42.48 4.94
6839 7638 7.424227 AAAACGTCTTATATTTTGACACGGA 57.576 32.000 0.00 0.00 0.00 4.69
6840 7639 6.642683 AACGTCTTATATTTTGACACGGAG 57.357 37.500 0.00 0.00 0.00 4.63
6841 7640 5.107133 ACGTCTTATATTTTGACACGGAGG 58.893 41.667 0.00 0.00 0.00 4.30
6842 7641 4.506654 CGTCTTATATTTTGACACGGAGGG 59.493 45.833 0.00 0.00 0.00 4.30
6843 7642 5.667466 GTCTTATATTTTGACACGGAGGGA 58.333 41.667 0.00 0.00 0.00 4.20
6844 7643 5.753921 GTCTTATATTTTGACACGGAGGGAG 59.246 44.000 0.00 0.00 0.00 4.30
6845 7644 5.424252 TCTTATATTTTGACACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
6846 7645 6.608405 TCTTATATTTTGACACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
6847 7646 5.687166 ATATTTTGACACGGAGGGAGTAA 57.313 39.130 0.00 0.00 0.00 2.24
6848 7647 4.569719 ATTTTGACACGGAGGGAGTAAT 57.430 40.909 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.079211 AGCTCATCAAGATAACCAACTACTTA 57.921 34.615 0.00 0.00 0.00 2.24
83 84 3.928992 AGCACATAGTTCACAGATTCGTG 59.071 43.478 0.00 0.00 38.29 4.35
174 177 8.894731 ACGGTAGATATCACAGATACATCATAC 58.105 37.037 5.32 0.00 0.00 2.39
178 181 7.119992 ACAGACGGTAGATATCACAGATACATC 59.880 40.741 5.32 1.13 0.00 3.06
179 182 6.943146 ACAGACGGTAGATATCACAGATACAT 59.057 38.462 5.32 0.00 0.00 2.29
180 183 6.204882 CACAGACGGTAGATATCACAGATACA 59.795 42.308 5.32 0.00 0.00 2.29
181 184 6.427242 TCACAGACGGTAGATATCACAGATAC 59.573 42.308 5.32 0.00 0.00 2.24
224 252 3.336468 AGATGCAGCTCACAAGAAGAAG 58.664 45.455 0.00 0.00 0.00 2.85
227 255 4.695396 AGATAGATGCAGCTCACAAGAAG 58.305 43.478 8.28 0.00 0.00 2.85
232 260 3.825585 CTCCTAGATAGATGCAGCTCACA 59.174 47.826 8.28 0.00 0.00 3.58
233 261 4.078537 TCTCCTAGATAGATGCAGCTCAC 58.921 47.826 8.28 3.71 0.00 3.51
234 262 4.379302 TCTCCTAGATAGATGCAGCTCA 57.621 45.455 8.28 0.00 0.00 4.26
236 264 6.684897 ATTTTCTCCTAGATAGATGCAGCT 57.315 37.500 10.44 10.44 0.00 4.24
237 265 9.097257 GATTATTTTCTCCTAGATAGATGCAGC 57.903 37.037 0.00 0.00 0.00 5.25
357 385 5.660417 CCTCAGGCATATAGACAGTCCATAT 59.340 44.000 0.00 0.00 0.00 1.78
510 538 6.582636 TCTCATCCATGGACAAACTATACAC 58.417 40.000 18.99 0.00 0.00 2.90
516 544 2.356535 GCCTCTCATCCATGGACAAACT 60.357 50.000 18.99 0.00 0.00 2.66
565 593 8.668510 TTATGAGGAATGTCTAAGCAATTCTC 57.331 34.615 0.00 0.00 0.00 2.87
584 613 3.805108 GCACCACTAGGCATCCTTATGAG 60.805 52.174 0.00 0.00 39.06 2.90
586 615 2.498167 GCACCACTAGGCATCCTTATG 58.502 52.381 0.00 0.00 39.06 1.90
627 656 9.893634 GCTATACACAGAGGAACTATCTATCTA 57.106 37.037 0.00 0.00 41.55 1.98
628 657 7.832187 GGCTATACACAGAGGAACTATCTATCT 59.168 40.741 0.00 0.00 41.55 1.98
629 658 7.612244 TGGCTATACACAGAGGAACTATCTATC 59.388 40.741 0.00 0.00 41.55 2.08
630 659 7.471041 TGGCTATACACAGAGGAACTATCTAT 58.529 38.462 0.00 0.00 41.55 1.98
1213 1245 2.734276 GTGAAGTCACTCTCAGGACC 57.266 55.000 4.15 0.00 43.25 4.46
1275 1307 4.844998 TCCATTCGCAGAAACATTTTCA 57.155 36.364 1.72 0.00 45.90 2.69
1295 1327 9.039870 CATGACTATCAGATTTCTGGTTACTTC 57.960 37.037 7.68 0.00 43.91 3.01
1466 1498 5.916318 TGTGATTTGCAAAATGGAAGTCTT 58.084 33.333 17.19 0.00 35.90 3.01
1519 1551 1.512926 CGAGCAAGCTTGGTACTTGT 58.487 50.000 29.74 0.00 45.09 3.16
1563 1595 5.059833 GGATTGGCCTCAGTATTAGACAAG 58.940 45.833 3.32 0.00 0.00 3.16
1575 1607 0.329261 CAGAACTGGGATTGGCCTCA 59.671 55.000 3.32 0.00 36.66 3.86
1697 1729 2.615912 GTGCTTCTATGATGACTTGGCC 59.384 50.000 0.00 0.00 0.00 5.36
1785 1817 4.016444 AGTTGTTTTCTTCAGTTGCTGGA 58.984 39.130 0.00 0.00 31.51 3.86
1793 1825 9.017669 CAAAATTCTCAGAGTTGTTTTCTTCAG 57.982 33.333 0.00 0.00 0.00 3.02
1798 1830 8.466086 AACACAAAATTCTCAGAGTTGTTTTC 57.534 30.769 0.00 0.00 30.20 2.29
1872 1904 2.890311 TGGCAGTACCATTTTTCCACTG 59.110 45.455 0.00 0.00 46.36 3.66
2042 2074 4.689062 TCTCCCACAGTTATCTTCCTTCT 58.311 43.478 0.00 0.00 0.00 2.85
2058 2090 1.003580 GTGACAGGCTTTGATCTCCCA 59.996 52.381 0.00 0.00 0.00 4.37
2060 2092 2.027745 TCAGTGACAGGCTTTGATCTCC 60.028 50.000 0.00 0.00 0.00 3.71
2199 2231 4.262249 GGAGCTGTACTGAGTTCTTTCTGT 60.262 45.833 3.61 0.00 34.28 3.41
2254 2286 3.740115 TGCCTGTAGAAGTTTCCAGAAC 58.260 45.455 0.00 0.00 0.00 3.01
2273 2305 4.654091 ACACCTTTATGTGCCATATTGC 57.346 40.909 0.00 0.00 39.93 3.56
2886 2918 3.584406 ACTCAACATCCTCATCTGGAACA 59.416 43.478 0.00 0.00 39.85 3.18
2973 3005 3.753272 TGAACTTGCTGGCTATCTCAAAC 59.247 43.478 0.00 0.00 0.00 2.93
3042 3074 8.840321 CCTTCTTCTGTTCTATTTTTCACTTCA 58.160 33.333 0.00 0.00 0.00 3.02
3179 3211 8.908786 TTCTTTACTTTCACAATCTGACTCAT 57.091 30.769 0.00 0.00 0.00 2.90
3234 3266 6.939622 TGATTCTTCTTCAGCATCTGTCTTA 58.060 36.000 0.00 0.00 32.61 2.10
3390 3422 6.183361 TGGGACCATCATTAGCAGATTTGATA 60.183 38.462 0.00 0.00 0.00 2.15
3439 3471 1.969208 TGCACTGCCCATTTCATCAAA 59.031 42.857 0.00 0.00 0.00 2.69
3550 3582 3.244526 TGCAAGCCAGTACTCATTTCTGA 60.245 43.478 0.00 0.00 0.00 3.27
3583 3615 6.716628 TGAGAAGTAGCAGATTCCACATTTTT 59.283 34.615 0.00 0.00 0.00 1.94
3670 3702 5.295431 TCAAATGTTGTAGCCAATTCTCG 57.705 39.130 0.00 0.00 32.11 4.04
3772 3804 4.776837 ACTGTCAATCTTCTCCAGATGAGT 59.223 41.667 0.00 0.00 41.93 3.41
3788 3820 2.030185 GTCCGAGAAGTAGCACTGTCAA 60.030 50.000 0.00 0.00 0.00 3.18
3806 3838 7.396540 ACAGGAACATTTTCATAAGATGTCC 57.603 36.000 0.00 1.82 33.16 4.02
3896 3928 2.838202 ACCCTGCTTTTCTCCTCGAATA 59.162 45.455 0.00 0.00 0.00 1.75
3900 3932 2.762535 TTACCCTGCTTTTCTCCTCG 57.237 50.000 0.00 0.00 0.00 4.63
3903 3938 7.041721 CCATTTTATTTACCCTGCTTTTCTCC 58.958 38.462 0.00 0.00 0.00 3.71
3938 3973 6.784473 TGCCATTGATATCCTTTCTCTAGAGA 59.216 38.462 18.76 18.76 35.27 3.10
4041 4112 1.768275 TCTTTTCCTGACACCTCAGCA 59.232 47.619 0.00 0.00 42.55 4.41
4092 4163 7.458170 TCTCTTTCCTTTTCTGTTATACTCCCT 59.542 37.037 0.00 0.00 0.00 4.20
4175 4246 9.084164 CAGCATTTTCTATTTCTTTCTCCAATG 57.916 33.333 0.00 0.00 0.00 2.82
4190 4261 8.394971 TCTTTCATTGACTTCAGCATTTTCTA 57.605 30.769 0.00 0.00 0.00 2.10
4222 4293 2.046447 TCTCCCTTTCCTCCTCTTCCAT 59.954 50.000 0.00 0.00 0.00 3.41
4332 4403 5.171476 CGAGCTTCATTAAAAGACCTCTCA 58.829 41.667 0.00 0.00 0.00 3.27
4419 4490 3.308046 CCCTCTCTTCTTTTAGCTTGGCT 60.308 47.826 0.00 0.00 43.41 4.75
4770 4846 8.900781 TGCTACTAGAATCTGTATTTCTTACGT 58.099 33.333 0.00 0.00 35.19 3.57
4870 4946 9.840427 AACATTTTATTCGTTTGAGGAACATAG 57.160 29.630 0.00 0.00 38.18 2.23
5096 5173 3.844943 GCGTGTCAGCACAAAAACTACTC 60.845 47.826 0.00 0.00 45.50 2.59
5116 5193 0.717224 GACTGCAAATTGGCAATGCG 59.283 50.000 14.47 13.30 44.40 4.73
5123 5200 3.460103 AGTGCTTTTGACTGCAAATTGG 58.540 40.909 0.00 0.00 43.07 3.16
5217 5294 5.163311 TGGTGAGAGAATTGTTCTTCTGACA 60.163 40.000 0.00 0.00 40.87 3.58
5232 5309 4.371624 AAAATGTGGATGTGGTGAGAGA 57.628 40.909 0.00 0.00 0.00 3.10
5241 5318 5.426185 AGGCCATGAATAAAAATGTGGATGT 59.574 36.000 5.01 0.00 0.00 3.06
5265 5343 5.068855 TCTGAAACATCAAGAACAAATGCCA 59.931 36.000 0.00 0.00 0.00 4.92
5389 5467 5.924254 CAGATGTGTGATGCTCAAAACAAAT 59.076 36.000 6.88 0.00 31.63 2.32
5397 5475 4.498241 GTTCTACAGATGTGTGATGCTCA 58.502 43.478 5.61 0.00 37.52 4.26
5418 5496 4.652421 TCCGTTACTTATCTGCATAAGGGT 59.348 41.667 10.94 0.68 44.22 4.34
5420 5498 6.347725 GCATTCCGTTACTTATCTGCATAAGG 60.348 42.308 10.94 1.25 44.22 2.69
5421 5499 6.202762 TGCATTCCGTTACTTATCTGCATAAG 59.797 38.462 5.68 5.68 45.09 1.73
5426 5504 4.119862 TCTGCATTCCGTTACTTATCTGC 58.880 43.478 0.00 0.00 0.00 4.26
5433 5511 3.678056 TCTGTTCTGCATTCCGTTACT 57.322 42.857 0.00 0.00 0.00 2.24
5437 5515 5.185454 TGATATTTCTGTTCTGCATTCCGT 58.815 37.500 0.00 0.00 0.00 4.69
5438 5516 5.739752 TGATATTTCTGTTCTGCATTCCG 57.260 39.130 0.00 0.00 0.00 4.30
5439 5517 6.017605 ACGATGATATTTCTGTTCTGCATTCC 60.018 38.462 0.00 0.00 0.00 3.01
5440 5518 6.952743 ACGATGATATTTCTGTTCTGCATTC 58.047 36.000 0.00 0.00 0.00 2.67
5441 5519 6.765036 AGACGATGATATTTCTGTTCTGCATT 59.235 34.615 0.00 0.00 0.00 3.56
5462 5542 4.509600 GCCAGATGGAAGAGAAATAAGACG 59.490 45.833 2.18 0.00 37.39 4.18
5465 5545 5.678583 TCTGCCAGATGGAAGAGAAATAAG 58.321 41.667 5.36 0.00 44.98 1.73
5466 5546 5.698741 TCTGCCAGATGGAAGAGAAATAA 57.301 39.130 5.36 0.00 44.98 1.40
5474 5554 2.573369 CAAGGATCTGCCAGATGGAAG 58.427 52.381 12.92 0.88 42.59 3.46
5479 5559 0.473326 GCTCCAAGGATCTGCCAGAT 59.527 55.000 6.98 6.98 37.73 2.90
5480 5560 0.619832 AGCTCCAAGGATCTGCCAGA 60.620 55.000 0.00 0.00 40.02 3.86
5514 5596 0.528684 GATCTGTGAGCGGTACTGGC 60.529 60.000 3.34 2.49 0.00 4.85
5520 5602 1.135915 GTGATGAGATCTGTGAGCGGT 59.864 52.381 0.00 0.00 0.00 5.68
5526 5608 1.568606 CGGCTGTGATGAGATCTGTG 58.431 55.000 0.00 0.00 0.00 3.66
5529 5611 1.445095 GGCGGCTGTGATGAGATCT 59.555 57.895 0.00 0.00 0.00 2.75
5583 5665 2.171237 CTGCACCTTATCTGGATGGACA 59.829 50.000 0.00 0.00 0.00 4.02
5595 5677 1.606313 GCCCCTTTGCTGCACCTTA 60.606 57.895 0.00 0.00 0.00 2.69
5675 5758 3.063997 CCAAATAGCTGTTCCAAGTAGCG 59.936 47.826 0.00 0.00 42.10 4.26
5691 5774 2.906389 AGTCAGACTGGAGCACCAAATA 59.094 45.455 0.91 0.00 46.32 1.40
5719 5802 6.387192 TTTCAGAAAAGATGGTATGGAGGA 57.613 37.500 0.00 0.00 0.00 3.71
5788 5871 4.412694 CGACAAAATATGACGGTCGTAC 57.587 45.455 12.03 0.00 44.42 3.67
5845 5928 2.304180 CCATCCATCACTCCCATCCTAC 59.696 54.545 0.00 0.00 0.00 3.18
5965 6056 9.246670 AGAGTCTTCTATCATCATCTAGAATGG 57.753 37.037 0.00 0.00 34.41 3.16
5994 6086 0.457851 CTCTTTCATCCGAGACCGCT 59.542 55.000 0.00 0.00 0.00 5.52
6021 6117 6.462552 TCACAATTCATTTCCAGAACAACA 57.537 33.333 0.00 0.00 0.00 3.33
6086 6186 3.048600 TCAAGGTGCCTATTAGATGCCT 58.951 45.455 0.00 0.00 0.00 4.75
6130 6238 9.274206 ACAAGAACTAGGTAATCTTTCAACTTC 57.726 33.333 0.00 0.00 31.26 3.01
6172 6281 1.247567 CGCCAACCCAACTTTCATCT 58.752 50.000 0.00 0.00 0.00 2.90
6187 6296 1.206132 CATCTACTACCAACACCGCCA 59.794 52.381 0.00 0.00 0.00 5.69
6189 6298 1.935933 CCATCTACTACCAACACCGC 58.064 55.000 0.00 0.00 0.00 5.68
6191 6300 3.270877 CTTGCCATCTACTACCAACACC 58.729 50.000 0.00 0.00 0.00 4.16
6202 6311 0.681887 TCGGTCGACCTTGCCATCTA 60.682 55.000 30.92 3.56 0.00 1.98
6203 6312 1.949847 CTCGGTCGACCTTGCCATCT 61.950 60.000 30.92 0.00 0.00 2.90
6204 6313 1.519455 CTCGGTCGACCTTGCCATC 60.519 63.158 30.92 3.55 0.00 3.51
6205 6314 2.579201 CTCGGTCGACCTTGCCAT 59.421 61.111 30.92 0.00 0.00 4.40
6212 6321 4.452733 CCTTGGCCTCGGTCGACC 62.453 72.222 25.28 25.28 0.00 4.79
6281 6442 0.393537 AATGGGCAAAGAGAGAGGCG 60.394 55.000 0.00 0.00 0.00 5.52
6283 6444 2.503895 ACAATGGGCAAAGAGAGAGG 57.496 50.000 0.00 0.00 0.00 3.69
6284 6445 4.077822 AGAAACAATGGGCAAAGAGAGAG 58.922 43.478 0.00 0.00 0.00 3.20
6285 6446 4.104383 AGAAACAATGGGCAAAGAGAGA 57.896 40.909 0.00 0.00 0.00 3.10
6286 6447 4.156739 GGTAGAAACAATGGGCAAAGAGAG 59.843 45.833 0.00 0.00 0.00 3.20
6287 6448 4.079253 GGTAGAAACAATGGGCAAAGAGA 58.921 43.478 0.00 0.00 0.00 3.10
6288 6449 4.082125 AGGTAGAAACAATGGGCAAAGAG 58.918 43.478 0.00 0.00 0.00 2.85
6289 6450 4.079253 GAGGTAGAAACAATGGGCAAAGA 58.921 43.478 0.00 0.00 0.00 2.52
6290 6451 3.193479 GGAGGTAGAAACAATGGGCAAAG 59.807 47.826 0.00 0.00 0.00 2.77
6291 6452 3.161866 GGAGGTAGAAACAATGGGCAAA 58.838 45.455 0.00 0.00 0.00 3.68
6292 6453 2.802719 GGAGGTAGAAACAATGGGCAA 58.197 47.619 0.00 0.00 0.00 4.52
6293 6454 1.339631 CGGAGGTAGAAACAATGGGCA 60.340 52.381 0.00 0.00 0.00 5.36
6317 6478 0.667184 CTCCAAATGGCGGTGTTTGC 60.667 55.000 0.00 0.00 34.75 3.68
6319 6480 0.178975 TCCTCCAAATGGCGGTGTTT 60.179 50.000 8.27 0.00 40.87 2.83
6320 6481 0.609131 CTCCTCCAAATGGCGGTGTT 60.609 55.000 8.27 0.00 40.87 3.32
6321 6482 1.002134 CTCCTCCAAATGGCGGTGT 60.002 57.895 8.27 0.00 40.87 4.16
6322 6483 0.745845 CTCTCCTCCAAATGGCGGTG 60.746 60.000 8.27 6.31 40.87 4.94
6323 6484 0.909610 TCTCTCCTCCAAATGGCGGT 60.910 55.000 8.27 0.00 40.87 5.68
6326 6487 0.813210 CGCTCTCTCCTCCAAATGGC 60.813 60.000 0.00 0.00 34.44 4.40
6327 6488 0.539051 ACGCTCTCTCCTCCAAATGG 59.461 55.000 0.00 0.00 0.00 3.16
6329 6490 0.827368 GGACGCTCTCTCCTCCAAAT 59.173 55.000 0.00 0.00 0.00 2.32
6330 6491 0.541998 TGGACGCTCTCTCCTCCAAA 60.542 55.000 0.00 0.00 29.50 3.28
6331 6492 0.541998 TTGGACGCTCTCTCCTCCAA 60.542 55.000 0.00 0.00 39.90 3.53
6332 6493 0.541998 TTTGGACGCTCTCTCCTCCA 60.542 55.000 0.00 0.00 0.00 3.86
6333 6494 0.174617 CTTTGGACGCTCTCTCCTCC 59.825 60.000 0.00 0.00 0.00 4.30
6334 6495 1.134175 CTCTTTGGACGCTCTCTCCTC 59.866 57.143 0.00 0.00 0.00 3.71
6335 6496 1.181786 CTCTTTGGACGCTCTCTCCT 58.818 55.000 0.00 0.00 0.00 3.69
6336 6497 0.892063 ACTCTTTGGACGCTCTCTCC 59.108 55.000 0.00 0.00 0.00 3.71
6337 6498 1.466697 CGACTCTTTGGACGCTCTCTC 60.467 57.143 0.00 0.00 0.00 3.20
6338 6499 0.523966 CGACTCTTTGGACGCTCTCT 59.476 55.000 0.00 0.00 0.00 3.10
6339 6500 1.073768 GCGACTCTTTGGACGCTCTC 61.074 60.000 0.00 0.00 46.06 3.20
6340 6501 1.080434 GCGACTCTTTGGACGCTCT 60.080 57.895 0.00 0.00 46.06 4.09
6341 6502 3.464628 GCGACTCTTTGGACGCTC 58.535 61.111 0.00 0.00 46.06 5.03
6344 6505 1.068194 AGAGAAGCGACTCTTTGGACG 60.068 52.381 9.32 0.00 43.62 4.79
6345 6506 2.230266 AGAGAGAAGCGACTCTTTGGAC 59.770 50.000 14.76 4.63 45.69 4.02
6346 6507 2.520069 AGAGAGAAGCGACTCTTTGGA 58.480 47.619 14.76 0.00 45.69 3.53
6347 6508 3.311486 AAGAGAGAAGCGACTCTTTGG 57.689 47.619 14.76 0.00 46.86 3.28
6357 6518 1.151668 TGAAGCGCAAAGAGAGAAGC 58.848 50.000 11.47 0.00 0.00 3.86
6358 6519 3.885484 TTTGAAGCGCAAAGAGAGAAG 57.115 42.857 11.47 0.00 41.37 2.85
6367 6528 4.566545 TTCTGAAAGATTTGAAGCGCAA 57.433 36.364 11.47 0.00 46.36 4.85
6408 6569 2.222027 CGTGAAGGTGAGGCTCTTTTT 58.778 47.619 16.72 6.85 0.00 1.94
6409 6570 1.884235 CGTGAAGGTGAGGCTCTTTT 58.116 50.000 16.72 7.21 0.00 2.27
6411 6572 1.004440 GCGTGAAGGTGAGGCTCTT 60.004 57.895 16.72 1.10 0.00 2.85
6412 6573 2.659610 GCGTGAAGGTGAGGCTCT 59.340 61.111 16.72 0.00 0.00 4.09
6413 6574 2.435059 GGCGTGAAGGTGAGGCTC 60.435 66.667 7.79 7.79 0.00 4.70
6414 6575 4.379243 CGGCGTGAAGGTGAGGCT 62.379 66.667 0.00 0.00 0.00 4.58
6415 6576 3.665675 ATCGGCGTGAAGGTGAGGC 62.666 63.158 6.85 0.00 0.00 4.70
6416 6577 1.811266 CATCGGCGTGAAGGTGAGG 60.811 63.158 6.85 0.00 0.00 3.86
6420 7138 1.815421 GCATCATCGGCGTGAAGGT 60.815 57.895 6.85 0.00 0.00 3.50
6427 7145 2.023741 GCAACTGCATCATCGGCG 59.976 61.111 0.00 0.00 41.59 6.46
6445 7163 0.812811 GATCTCGAGGCTGCATTGCA 60.813 55.000 13.56 11.50 36.92 4.08
6446 7164 0.532417 AGATCTCGAGGCTGCATTGC 60.532 55.000 13.56 0.46 0.00 3.56
6447 7165 1.500108 GAGATCTCGAGGCTGCATTG 58.500 55.000 13.56 0.00 0.00 2.82
6448 7166 3.984838 GAGATCTCGAGGCTGCATT 57.015 52.632 13.56 0.00 0.00 3.56
6485 7280 4.430765 ACGACGATGGGCACGGAC 62.431 66.667 0.00 0.00 34.93 4.79
6504 7299 0.043822 GAATGAGATGAACGCGACGC 60.044 55.000 15.93 10.49 0.00 5.19
6548 7343 5.170748 GTCAACCATAGGAAAATTTGCCTG 58.829 41.667 25.95 12.95 35.73 4.85
6556 7353 7.505585 ACTTCAGATTTGTCAACCATAGGAAAA 59.494 33.333 0.00 0.00 0.00 2.29
6592 7389 1.468520 GCGCATCCTCTTGTTAAGCAA 59.531 47.619 0.30 0.00 35.50 3.91
6610 7407 1.662629 CTCTGCTGTAATTGTGAGGCG 59.337 52.381 0.00 0.00 0.00 5.52
6660 7457 6.857964 GCAACGAAGAATGAGATTTTTCTTGA 59.142 34.615 2.87 0.00 41.12 3.02
6684 7481 1.474077 CAACCTCTGTTGCATAAGGGC 59.526 52.381 8.50 0.00 44.86 5.19
6702 7499 2.948979 CTGTGCAGGTACCAACTTTCAA 59.051 45.455 15.94 0.00 0.00 2.69
6703 7500 2.092646 ACTGTGCAGGTACCAACTTTCA 60.093 45.455 15.94 4.69 0.00 2.69
6705 7502 2.729028 ACTGTGCAGGTACCAACTTT 57.271 45.000 15.94 0.00 0.00 2.66
6706 7503 2.092646 TGAACTGTGCAGGTACCAACTT 60.093 45.455 15.94 1.02 0.00 2.66
6707 7504 1.488812 TGAACTGTGCAGGTACCAACT 59.511 47.619 15.94 0.00 0.00 3.16
6708 7505 1.961793 TGAACTGTGCAGGTACCAAC 58.038 50.000 15.94 9.93 0.00 3.77
6709 7506 2.371841 AGATGAACTGTGCAGGTACCAA 59.628 45.455 15.94 0.00 0.00 3.67
6723 7522 6.090483 TCCTCTCGATGGAATTAGATGAAC 57.910 41.667 5.00 0.00 0.00 3.18
6726 7525 5.847304 TGTTCCTCTCGATGGAATTAGATG 58.153 41.667 18.80 0.00 44.27 2.90
6740 7539 4.764308 AGATCAAAGCCTTTTGTTCCTCTC 59.236 41.667 0.00 0.00 43.33 3.20
6753 7552 2.769095 ACAGAGGGAGTAGATCAAAGCC 59.231 50.000 0.00 0.00 0.00 4.35
6754 7553 5.105310 TGTTACAGAGGGAGTAGATCAAAGC 60.105 44.000 0.00 0.00 0.00 3.51
6755 7554 6.531503 TGTTACAGAGGGAGTAGATCAAAG 57.468 41.667 0.00 0.00 0.00 2.77
6756 7555 6.928348 TTGTTACAGAGGGAGTAGATCAAA 57.072 37.500 0.00 0.00 0.00 2.69
6757 7556 6.928348 TTTGTTACAGAGGGAGTAGATCAA 57.072 37.500 0.00 0.00 0.00 2.57
6758 7557 6.928348 TTTTGTTACAGAGGGAGTAGATCA 57.072 37.500 0.00 0.00 0.00 2.92
6759 7558 8.915036 TCTATTTTGTTACAGAGGGAGTAGATC 58.085 37.037 0.00 0.00 0.00 2.75
6760 7559 8.840200 TCTATTTTGTTACAGAGGGAGTAGAT 57.160 34.615 0.00 0.00 0.00 1.98
6761 7560 8.660295 TTCTATTTTGTTACAGAGGGAGTAGA 57.340 34.615 0.00 0.00 0.00 2.59
6762 7561 9.720769 TTTTCTATTTTGTTACAGAGGGAGTAG 57.279 33.333 0.00 0.00 0.00 2.57
6763 7562 9.498176 GTTTTCTATTTTGTTACAGAGGGAGTA 57.502 33.333 0.00 0.00 0.00 2.59
6764 7563 7.172703 CGTTTTCTATTTTGTTACAGAGGGAGT 59.827 37.037 0.00 0.00 0.00 3.85
6765 7564 7.172703 ACGTTTTCTATTTTGTTACAGAGGGAG 59.827 37.037 0.00 0.00 0.00 4.30
6766 7565 6.993902 ACGTTTTCTATTTTGTTACAGAGGGA 59.006 34.615 0.00 0.00 0.00 4.20
6767 7566 7.198306 ACGTTTTCTATTTTGTTACAGAGGG 57.802 36.000 0.00 0.00 0.00 4.30
6768 7567 9.511144 AAAACGTTTTCTATTTTGTTACAGAGG 57.489 29.630 20.26 0.00 0.00 3.69
6794 7593 8.981647 CGTTTTTGTAGGCTAGTTTAGTCTAAA 58.018 33.333 0.65 0.65 43.91 1.85
6795 7594 8.143835 ACGTTTTTGTAGGCTAGTTTAGTCTAA 58.856 33.333 0.00 0.00 43.91 2.10
6796 7595 7.661040 ACGTTTTTGTAGGCTAGTTTAGTCTA 58.339 34.615 0.00 0.00 41.75 2.59
6797 7596 6.519382 ACGTTTTTGTAGGCTAGTTTAGTCT 58.481 36.000 0.00 0.00 44.27 3.24
6798 7597 6.644181 AGACGTTTTTGTAGGCTAGTTTAGTC 59.356 38.462 0.00 0.00 0.00 2.59
6799 7598 6.519382 AGACGTTTTTGTAGGCTAGTTTAGT 58.481 36.000 0.00 0.00 0.00 2.24
6800 7599 7.417496 AAGACGTTTTTGTAGGCTAGTTTAG 57.583 36.000 0.00 0.00 0.00 1.85
6802 7601 7.974482 ATAAGACGTTTTTGTAGGCTAGTTT 57.026 32.000 0.00 0.00 0.00 2.66
6803 7602 9.662947 AATATAAGACGTTTTTGTAGGCTAGTT 57.337 29.630 0.00 0.00 0.00 2.24
6804 7603 9.662947 AAATATAAGACGTTTTTGTAGGCTAGT 57.337 29.630 0.00 0.00 0.00 2.57
6807 7606 9.005777 TCAAAATATAAGACGTTTTTGTAGGCT 57.994 29.630 16.32 0.00 39.13 4.58
6808 7607 9.058424 GTCAAAATATAAGACGTTTTTGTAGGC 57.942 33.333 16.32 6.39 39.13 3.93
6811 7610 9.583530 CGTGTCAAAATATAAGACGTTTTTGTA 57.416 29.630 16.32 6.69 39.13 2.41
6812 7611 7.588488 CCGTGTCAAAATATAAGACGTTTTTGT 59.412 33.333 16.32 4.99 39.13 2.83
6813 7612 7.799447 TCCGTGTCAAAATATAAGACGTTTTTG 59.201 33.333 12.50 12.50 39.33 2.44
6814 7613 7.863666 TCCGTGTCAAAATATAAGACGTTTTT 58.136 30.769 0.00 0.00 35.09 1.94
6815 7614 7.360607 CCTCCGTGTCAAAATATAAGACGTTTT 60.361 37.037 0.00 0.00 35.09 2.43
6816 7615 6.091713 CCTCCGTGTCAAAATATAAGACGTTT 59.908 38.462 0.00 0.00 35.09 3.60
6817 7616 5.579511 CCTCCGTGTCAAAATATAAGACGTT 59.420 40.000 0.00 0.00 35.09 3.99
6818 7617 5.107133 CCTCCGTGTCAAAATATAAGACGT 58.893 41.667 0.00 0.00 35.09 4.34
6819 7618 4.506654 CCCTCCGTGTCAAAATATAAGACG 59.493 45.833 0.00 0.00 35.09 4.18
6820 7619 5.667466 TCCCTCCGTGTCAAAATATAAGAC 58.333 41.667 0.00 0.00 0.00 3.01
6821 7620 5.424252 ACTCCCTCCGTGTCAAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
6822 7621 5.671493 ACTCCCTCCGTGTCAAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
6823 7622 5.687166 ACTCCCTCCGTGTCAAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
6824 7623 6.795144 TTACTCCCTCCGTGTCAAAATATA 57.205 37.500 0.00 0.00 0.00 0.86
6825 7624 5.687166 TTACTCCCTCCGTGTCAAAATAT 57.313 39.130 0.00 0.00 0.00 1.28
6826 7625 5.687166 ATTACTCCCTCCGTGTCAAAATA 57.313 39.130 0.00 0.00 0.00 1.40
6827 7626 4.569719 ATTACTCCCTCCGTGTCAAAAT 57.430 40.909 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.