Multiple sequence alignment - TraesCS1A01G419100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G419100 chr1A 100.000 2750 0 0 1 2750 576079333 576076584 0.000000e+00 5079.0
1 TraesCS1A01G419100 chr1A 79.499 639 67 34 1113 1698 576203516 576202889 1.980000e-106 396.0
2 TraesCS1A01G419100 chr1A 84.900 351 44 5 1112 1461 576139135 576138793 2.030000e-91 346.0
3 TraesCS1A01G419100 chr1A 87.197 289 31 1 1068 1356 576065909 576065627 9.500000e-85 324.0
4 TraesCS1A01G419100 chr1A 79.487 312 44 13 582 887 576204082 576203785 1.290000e-48 204.0
5 TraesCS1A01G419100 chr1A 82.237 152 20 6 2601 2750 307490622 307490768 1.030000e-24 124.0
6 TraesCS1A01G419100 chr1A 83.594 128 12 7 1577 1699 576138613 576138490 8.050000e-21 111.0
7 TraesCS1A01G419100 chr1B 92.692 1081 35 18 887 1936 667965518 667966585 0.000000e+00 1519.0
8 TraesCS1A01G419100 chr1B 87.500 592 55 13 1 581 667964512 667965095 0.000000e+00 665.0
9 TraesCS1A01G419100 chr1B 85.833 360 43 6 1103 1461 667930949 667931301 2.590000e-100 375.0
10 TraesCS1A01G419100 chr1B 84.167 360 49 6 1103 1461 667975740 667975388 2.620000e-90 342.0
11 TraesCS1A01G419100 chr1B 79.264 516 77 17 2014 2522 688402766 688402274 1.580000e-87 333.0
12 TraesCS1A01G419100 chr1B 86.458 288 30 2 1072 1356 667918613 667918332 9.570000e-80 307.0
13 TraesCS1A01G419100 chr1B 85.382 301 23 9 606 886 667965178 667965477 2.680000e-75 292.0
14 TraesCS1A01G419100 chr1B 79.184 245 18 14 1577 1794 667975213 667974975 3.690000e-29 139.0
15 TraesCS1A01G419100 chr1B 87.179 117 11 4 2596 2710 144929054 144928940 2.220000e-26 130.0
16 TraesCS1A01G419100 chr1B 90.323 93 7 2 1921 2011 667966599 667966691 1.340000e-23 121.0
17 TraesCS1A01G419100 chr1B 77.311 238 20 13 1577 1785 667996694 667996462 2.900000e-20 110.0
18 TraesCS1A01G419100 chr1B 75.934 241 29 17 1577 1794 668030529 668030295 2.250000e-16 97.1
19 TraesCS1A01G419100 chr1B 81.452 124 16 7 1577 1698 667931476 667931594 8.110000e-16 95.3
20 TraesCS1A01G419100 chr1D 90.758 1082 32 28 887 1912 479738062 479736993 0.000000e+00 1382.0
21 TraesCS1A01G419100 chr1D 88.047 594 54 11 1 584 479739085 479738499 0.000000e+00 688.0
22 TraesCS1A01G419100 chr1D 92.357 314 14 6 580 886 479738425 479738115 3.250000e-119 438.0
23 TraesCS1A01G419100 chr1D 82.670 427 52 14 1113 1529 479750799 479750385 2.600000e-95 359.0
24 TraesCS1A01G419100 chr1D 81.316 471 61 15 1103 1556 479759374 479758914 9.370000e-95 357.0
25 TraesCS1A01G419100 chr1D 79.032 248 40 10 641 887 479751288 479751052 2.830000e-35 159.0
26 TraesCS1A01G419100 chr1D 79.237 236 17 12 1577 1785 479758861 479758631 4.780000e-28 135.0
27 TraesCS1A01G419100 chr1D 83.740 123 16 3 1577 1698 479750289 479750170 2.240000e-21 113.0
28 TraesCS1A01G419100 chr1D 88.636 88 4 1 1924 2011 479668766 479668847 4.850000e-18 102.0
29 TraesCS1A01G419100 chr6D 81.928 498 69 13 2012 2508 97296362 97296839 4.270000e-108 401.0
30 TraesCS1A01G419100 chr6D 85.333 150 21 1 2599 2748 298954257 298954405 1.320000e-33 154.0
31 TraesCS1A01G419100 chr7A 79.845 516 92 10 2012 2522 651738792 651739300 1.560000e-97 366.0
32 TraesCS1A01G419100 chr7A 79.310 377 66 11 2016 2385 709843968 709844339 1.260000e-63 254.0
33 TraesCS1A01G419100 chr7A 94.805 154 8 0 2597 2750 59808305 59808152 9.840000e-60 241.0
34 TraesCS1A01G419100 chr7A 91.045 67 6 0 2679 2745 52895280 52895346 1.050000e-14 91.6
35 TraesCS1A01G419100 chr3A 79.846 521 89 14 2004 2522 165341069 165340563 1.560000e-97 366.0
36 TraesCS1A01G419100 chr3A 78.805 519 94 12 2013 2522 716771490 716772001 4.390000e-88 335.0
37 TraesCS1A01G419100 chr2D 79.190 543 99 12 2012 2545 636211346 636210809 5.600000e-97 364.0
38 TraesCS1A01G419100 chr7B 79.537 518 86 14 2012 2521 57053618 57053113 4.360000e-93 351.0
39 TraesCS1A01G419100 chr4A 78.876 516 92 12 2013 2522 91735707 91735203 1.580000e-87 333.0
40 TraesCS1A01G419100 chr4A 81.341 343 54 7 2068 2402 485015487 485015147 1.260000e-68 270.0
41 TraesCS1A01G419100 chr4A 93.590 156 10 0 2595 2750 595992964 595992809 1.650000e-57 233.0
42 TraesCS1A01G419100 chr3D 78.728 503 81 15 2012 2499 2630325 2630816 2.060000e-81 313.0
43 TraesCS1A01G419100 chr6B 80.048 421 74 10 2108 2522 694264143 694263727 1.240000e-78 303.0
44 TraesCS1A01G419100 chr4D 78.924 446 78 12 2087 2522 37512286 37512725 3.470000e-74 289.0
45 TraesCS1A01G419100 chr2B 81.212 330 50 7 2012 2340 6075470 6075152 3.510000e-64 255.0
46 TraesCS1A01G419100 chr6A 92.258 155 11 1 2596 2750 598209648 598209495 4.610000e-53 219.0
47 TraesCS1A01G419100 chr7D 82.422 256 36 7 2309 2563 462335765 462336012 5.960000e-52 215.0
48 TraesCS1A01G419100 chr7D 89.381 113 9 3 2592 2703 573006737 573006847 3.690000e-29 139.0
49 TraesCS1A01G419100 chr3B 84.459 148 20 3 2601 2747 814533580 814533725 2.850000e-30 143.0
50 TraesCS1A01G419100 chr5D 89.286 112 9 3 2601 2710 542973781 542973891 1.330000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G419100 chr1A 576076584 576079333 2749 True 5079.000000 5079 100.000000 1 2750 1 chr1A.!!$R2 2749
1 TraesCS1A01G419100 chr1A 576202889 576204082 1193 True 300.000000 396 79.493000 582 1698 2 chr1A.!!$R4 1116
2 TraesCS1A01G419100 chr1A 576138490 576139135 645 True 228.500000 346 84.247000 1112 1699 2 chr1A.!!$R3 587
3 TraesCS1A01G419100 chr1B 667964512 667966691 2179 False 649.250000 1519 88.974250 1 2011 4 chr1B.!!$F2 2010
4 TraesCS1A01G419100 chr1B 667974975 667975740 765 True 240.500000 342 81.675500 1103 1794 2 chr1B.!!$R6 691
5 TraesCS1A01G419100 chr1B 667930949 667931594 645 False 235.150000 375 83.642500 1103 1698 2 chr1B.!!$F1 595
6 TraesCS1A01G419100 chr1D 479736993 479739085 2092 True 836.000000 1382 90.387333 1 1912 3 chr1D.!!$R1 1911
7 TraesCS1A01G419100 chr1D 479758631 479759374 743 True 246.000000 357 80.276500 1103 1785 2 chr1D.!!$R3 682
8 TraesCS1A01G419100 chr1D 479750170 479751288 1118 True 210.333333 359 81.814000 641 1698 3 chr1D.!!$R2 1057
9 TraesCS1A01G419100 chr7A 651738792 651739300 508 False 366.000000 366 79.845000 2012 2522 1 chr7A.!!$F2 510
10 TraesCS1A01G419100 chr3A 165340563 165341069 506 True 366.000000 366 79.846000 2004 2522 1 chr3A.!!$R1 518
11 TraesCS1A01G419100 chr3A 716771490 716772001 511 False 335.000000 335 78.805000 2013 2522 1 chr3A.!!$F1 509
12 TraesCS1A01G419100 chr2D 636210809 636211346 537 True 364.000000 364 79.190000 2012 2545 1 chr2D.!!$R1 533
13 TraesCS1A01G419100 chr7B 57053113 57053618 505 True 351.000000 351 79.537000 2012 2521 1 chr7B.!!$R1 509
14 TraesCS1A01G419100 chr4A 91735203 91735707 504 True 333.000000 333 78.876000 2013 2522 1 chr4A.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 502 0.037326 ACCAAGATCATCACGCACGT 60.037 50.0 0.0 0.0 0.0 4.49 F
634 724 0.673956 GAACCCTGTTTCGGCCTCTC 60.674 60.0 0.0 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1955 0.035725 CATGCAGCAAGGAGACAGGA 60.036 55.0 0.00 0.00 0.00 3.86 R
2315 2742 0.251165 TGCCTCTTTCGAAAAGGGGG 60.251 55.0 26.39 20.16 38.37 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.355445 ATCGATGAGCCGCGACACAT 62.355 55.000 8.23 6.29 39.56 3.21
39 40 2.125147 CCGCGACACATGGTGGAT 60.125 61.111 8.23 0.00 36.34 3.41
66 67 4.933400 TCTTGTCACTTAATACCGGAAAGC 59.067 41.667 9.46 0.00 0.00 3.51
220 222 6.351033 GCAAGATATATCCTGGTTCGTATGGA 60.351 42.308 12.28 0.00 0.00 3.41
235 238 3.684305 CGTATGGACAACAGCATCTGAAA 59.316 43.478 0.29 0.00 35.18 2.69
271 274 7.445402 GGAATCCAATCTTTGCAACTAGCTATA 59.555 37.037 0.00 0.00 45.94 1.31
276 279 8.715998 CCAATCTTTGCAACTAGCTATATGTAG 58.284 37.037 0.00 0.00 45.94 2.74
393 398 9.231297 TGTTAGAAAGAATGGGAACTTAGATTG 57.769 33.333 0.00 0.00 0.00 2.67
394 399 9.449719 GTTAGAAAGAATGGGAACTTAGATTGA 57.550 33.333 0.00 0.00 0.00 2.57
396 401 8.940397 AGAAAGAATGGGAACTTAGATTGAAA 57.060 30.769 0.00 0.00 0.00 2.69
397 402 9.367160 AGAAAGAATGGGAACTTAGATTGAAAA 57.633 29.630 0.00 0.00 0.00 2.29
398 403 9.981114 GAAAGAATGGGAACTTAGATTGAAAAA 57.019 29.630 0.00 0.00 0.00 1.94
466 474 3.442273 ACGCAACCCCAGTAAATATGTTG 59.558 43.478 0.00 0.00 36.92 3.33
494 502 0.037326 ACCAAGATCATCACGCACGT 60.037 50.000 0.00 0.00 0.00 4.49
513 521 4.684703 CACGTAAGGAGTTAGTTGAACCAG 59.315 45.833 0.00 0.00 46.39 4.00
517 525 6.090898 CGTAAGGAGTTAGTTGAACCAGAATG 59.909 42.308 0.00 0.00 39.02 2.67
553 562 9.487790 AACATTTTTCCATATTTTGTGGTGTAG 57.512 29.630 0.00 0.00 37.96 2.74
574 583 7.331934 GTGTAGATAAGAAGTCAAGACATGCAA 59.668 37.037 2.72 0.00 0.00 4.08
622 712 5.555017 TCAAAATGAGAGAAGAGAACCCTG 58.445 41.667 0.00 0.00 0.00 4.45
634 724 0.673956 GAACCCTGTTTCGGCCTCTC 60.674 60.000 0.00 0.00 0.00 3.20
851 966 5.915196 GGACAGAAAATTTTGTTCCTTCTCG 59.085 40.000 8.47 0.00 0.00 4.04
863 978 1.684049 CTTCTCGAGCTGACCCCCT 60.684 63.158 7.81 0.00 0.00 4.79
879 994 1.671901 CCCTTCCTCACTCCTCTCGC 61.672 65.000 0.00 0.00 0.00 5.03
1006 1181 2.485903 CTCATCCATCTCAGAAGCAGC 58.514 52.381 0.00 0.00 0.00 5.25
1423 1654 2.825532 TGAAAGCTGGGGTTAATCTTGC 59.174 45.455 0.00 0.00 0.00 4.01
1435 1667 6.878389 GGGGTTAATCTTGCAATTTTGATGAA 59.122 34.615 0.00 0.00 0.00 2.57
1634 1955 1.456892 TGGTCTATGGCGGGATCGT 60.457 57.895 0.00 0.00 38.89 3.73
1646 1967 0.461961 GGGATCGTCCTGTCTCCTTG 59.538 60.000 4.41 0.00 36.57 3.61
1649 1970 0.534412 ATCGTCCTGTCTCCTTGCTG 59.466 55.000 0.00 0.00 0.00 4.41
1714 2054 9.705290 ATATTTATATCGTCTGCACATGTAACA 57.295 29.630 0.00 0.00 0.00 2.41
1812 2155 6.389830 ACAAATCTGAACAAATACAGTGCA 57.610 33.333 0.00 0.00 35.84 4.57
1813 2156 6.208644 ACAAATCTGAACAAATACAGTGCAC 58.791 36.000 9.40 9.40 35.84 4.57
1819 2162 6.094742 TCTGAACAAATACAGTGCACTTCAAA 59.905 34.615 18.94 0.00 35.84 2.69
1821 2164 5.574891 ACAAATACAGTGCACTTCAAACA 57.425 34.783 18.94 0.00 0.00 2.83
1822 2165 5.960113 ACAAATACAGTGCACTTCAAACAA 58.040 33.333 18.94 0.00 0.00 2.83
1823 2166 6.393990 ACAAATACAGTGCACTTCAAACAAA 58.606 32.000 18.94 0.00 0.00 2.83
1824 2167 7.041107 ACAAATACAGTGCACTTCAAACAAAT 58.959 30.769 18.94 0.00 0.00 2.32
1825 2168 7.222611 ACAAATACAGTGCACTTCAAACAAATC 59.777 33.333 18.94 0.00 0.00 2.17
1937 2336 9.589461 TTTCTTCCTATTAACCACCAACATTTA 57.411 29.630 0.00 0.00 0.00 1.40
1948 2347 6.381250 ACCACCAACATTTATATATTGGCCT 58.619 36.000 3.32 0.00 44.60 5.19
1951 2350 6.493115 CACCAACATTTATATATTGGCCTGGA 59.507 38.462 3.32 0.00 44.60 3.86
1958 2357 7.996098 TTTATATATTGGCCTGGAGTTAAGC 57.004 36.000 3.32 0.00 0.00 3.09
1978 2378 1.437160 CACACAACACAGCCCAACC 59.563 57.895 0.00 0.00 0.00 3.77
2021 2421 2.791158 GCACATTCCCGCGAAATAACTG 60.791 50.000 8.23 4.79 0.00 3.16
2036 2436 7.921745 GCGAAATAACTGATTAAGGAGTACTCT 59.078 37.037 21.88 6.36 0.00 3.24
2052 2452 6.043854 AGTACTCTTTCCAAAGATCACTCC 57.956 41.667 2.21 0.00 43.52 3.85
2064 2464 6.352565 CCAAAGATCACTCCCATCTTCTTAGT 60.353 42.308 0.00 0.00 39.27 2.24
2071 2471 4.253685 CTCCCATCTTCTTAGTTTGCGAA 58.746 43.478 0.00 0.00 0.00 4.70
2099 2501 1.392168 GCACTTTATGCGCGTCACTTA 59.608 47.619 4.79 0.00 46.55 2.24
2111 2513 2.159338 GCGTCACTTATCGTAACCTGGA 60.159 50.000 0.00 0.00 0.00 3.86
2242 2647 9.527157 TTTCAAAACTAGATCCCATGTTGATAA 57.473 29.630 0.00 0.00 0.00 1.75
2288 2713 1.746787 ACCGGACAAAAAGTTGGACAC 59.253 47.619 9.46 0.00 39.22 3.67
2315 2742 0.040692 GAACCGGGAGCACGTTTTTC 60.041 55.000 6.32 0.00 0.00 2.29
2337 2764 0.517316 CCTTTTCGAAAGAGGCACGG 59.483 55.000 19.33 7.69 43.69 4.94
2338 2765 1.226746 CTTTTCGAAAGAGGCACGGT 58.773 50.000 10.98 0.00 43.69 4.83
2392 2819 2.338620 GGAAGCAAAACCGTGCCC 59.661 61.111 0.00 0.00 46.14 5.36
2487 2916 3.353836 GCAAAACCGCGCCTCTCA 61.354 61.111 0.00 0.00 0.00 3.27
2488 2917 2.690778 GCAAAACCGCGCCTCTCAT 61.691 57.895 0.00 0.00 0.00 2.90
2502 2931 2.589014 CTCTCATGAAAGCAAAACCGC 58.411 47.619 0.00 0.00 0.00 5.68
2523 2952 2.227388 CGCCTCTCATGAAAGCAAAACT 59.773 45.455 10.76 0.00 0.00 2.66
2525 2954 3.572584 CCTCTCATGAAAGCAAAACTGC 58.427 45.455 0.00 0.00 0.00 4.40
2545 2974 1.127582 CGCCTCTCGCAGAAGAAAAAG 59.872 52.381 0.00 0.00 37.30 2.27
2546 2975 2.417719 GCCTCTCGCAGAAGAAAAAGA 58.582 47.619 0.00 0.00 37.47 2.52
2547 2976 2.808543 GCCTCTCGCAGAAGAAAAAGAA 59.191 45.455 0.00 0.00 37.47 2.52
2548 2977 3.251004 GCCTCTCGCAGAAGAAAAAGAAA 59.749 43.478 0.00 0.00 37.47 2.52
2549 2978 4.777823 CCTCTCGCAGAAGAAAAAGAAAC 58.222 43.478 0.00 0.00 34.09 2.78
2550 2979 4.449779 CTCTCGCAGAAGAAAAAGAAACG 58.550 43.478 0.00 0.00 34.09 3.60
2551 2980 2.967357 CTCGCAGAAGAAAAAGAAACGC 59.033 45.455 0.00 0.00 34.09 4.84
2552 2981 1.703490 CGCAGAAGAAAAAGAAACGCG 59.297 47.619 3.53 3.53 0.00 6.01
2553 2982 2.716398 GCAGAAGAAAAAGAAACGCGT 58.284 42.857 5.58 5.58 0.00 6.01
2554 2983 3.105937 GCAGAAGAAAAAGAAACGCGTT 58.894 40.909 20.79 20.79 0.00 4.84
2555 2984 3.546271 GCAGAAGAAAAAGAAACGCGTTT 59.454 39.130 35.28 35.28 35.14 3.60
2556 2985 4.031314 GCAGAAGAAAAAGAAACGCGTTTT 59.969 37.500 35.06 20.95 40.17 2.43
2557 2986 5.444087 GCAGAAGAAAAAGAAACGCGTTTTT 60.444 36.000 35.06 28.01 38.11 1.94
2593 3022 7.524717 TTTTTCAAAAATTTGTTGGGTCCAA 57.475 28.000 5.84 0.00 39.18 3.53
2594 3023 7.524717 TTTTCAAAAATTTGTTGGGTCCAAA 57.475 28.000 3.74 0.00 39.18 3.28
2595 3024 7.524717 TTTCAAAAATTTGTTGGGTCCAAAA 57.475 28.000 3.74 0.00 39.18 2.44
2596 3025 6.749923 TCAAAAATTTGTTGGGTCCAAAAG 57.250 33.333 3.74 0.00 39.18 2.27
2597 3026 5.124617 TCAAAAATTTGTTGGGTCCAAAAGC 59.875 36.000 3.74 0.00 39.18 3.51
2598 3027 4.502105 AAATTTGTTGGGTCCAAAAGCT 57.498 36.364 3.74 0.00 37.70 3.74
2599 3028 5.622346 AAATTTGTTGGGTCCAAAAGCTA 57.378 34.783 3.74 0.00 37.70 3.32
2600 3029 5.622346 AATTTGTTGGGTCCAAAAGCTAA 57.378 34.783 3.74 0.00 37.70 3.09
2601 3030 4.664150 TTTGTTGGGTCCAAAAGCTAAG 57.336 40.909 3.74 0.00 37.70 2.18
2602 3031 3.586470 TGTTGGGTCCAAAAGCTAAGA 57.414 42.857 3.74 0.00 37.70 2.10
2603 3032 3.486383 TGTTGGGTCCAAAAGCTAAGAG 58.514 45.455 3.74 0.00 37.70 2.85
2604 3033 2.200373 TGGGTCCAAAAGCTAAGAGC 57.800 50.000 0.00 0.00 42.84 4.09
2605 3034 1.423541 TGGGTCCAAAAGCTAAGAGCA 59.576 47.619 0.64 0.00 45.56 4.26
2606 3035 2.041620 TGGGTCCAAAAGCTAAGAGCAT 59.958 45.455 0.64 0.00 45.56 3.79
2607 3036 2.685388 GGGTCCAAAAGCTAAGAGCATC 59.315 50.000 0.64 0.00 45.56 3.91
2608 3037 7.513767 TTGGGTCCAAAAGCTAAGAGCATCT 62.514 44.000 0.00 0.00 39.34 2.90
2618 3047 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
2619 3048 1.078848 GAGCATCTCCAGCCGTTGT 60.079 57.895 0.00 0.00 0.00 3.32
2620 3049 1.364626 GAGCATCTCCAGCCGTTGTG 61.365 60.000 0.00 0.00 0.00 3.33
2621 3050 3.044059 GCATCTCCAGCCGTTGTGC 62.044 63.158 0.00 0.00 0.00 4.57
2622 3051 2.045926 ATCTCCAGCCGTTGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
2623 3052 3.628646 ATCTCCAGCCGTTGTGCCC 62.629 63.158 0.00 0.00 0.00 5.36
2653 3082 2.438795 TTTTTCGGCCTCCTGGGG 59.561 61.111 0.00 0.00 35.12 4.96
2654 3083 2.157452 TTTTTCGGCCTCCTGGGGA 61.157 57.895 0.00 0.00 35.12 4.81
2662 3091 3.554342 CTCCTGGGGAGGCATCGG 61.554 72.222 5.73 0.00 45.43 4.18
2668 3097 4.256180 GGGAGGCATCGGCGGATT 62.256 66.667 7.21 0.00 42.47 3.01
2669 3098 2.203209 GGAGGCATCGGCGGATTT 60.203 61.111 7.21 0.00 42.47 2.17
2670 3099 1.823899 GGAGGCATCGGCGGATTTT 60.824 57.895 7.21 0.00 42.47 1.82
2671 3100 1.384222 GGAGGCATCGGCGGATTTTT 61.384 55.000 7.21 0.00 42.47 1.94
2686 3115 3.913855 TTTTTGAGTCTGGGTGGCA 57.086 47.368 0.00 0.00 0.00 4.92
2687 3116 2.151502 TTTTTGAGTCTGGGTGGCAA 57.848 45.000 0.00 0.00 0.00 4.52
2688 3117 2.151502 TTTTGAGTCTGGGTGGCAAA 57.848 45.000 0.00 0.00 0.00 3.68
2689 3118 2.380064 TTTGAGTCTGGGTGGCAAAT 57.620 45.000 0.00 0.00 0.00 2.32
2690 3119 2.380064 TTGAGTCTGGGTGGCAAATT 57.620 45.000 0.00 0.00 0.00 1.82
2691 3120 2.380064 TGAGTCTGGGTGGCAAATTT 57.620 45.000 0.00 0.00 0.00 1.82
2692 3121 2.676748 TGAGTCTGGGTGGCAAATTTT 58.323 42.857 0.00 0.00 0.00 1.82
2693 3122 3.037549 TGAGTCTGGGTGGCAAATTTTT 58.962 40.909 0.00 0.00 0.00 1.94
2694 3123 3.069443 TGAGTCTGGGTGGCAAATTTTTC 59.931 43.478 0.00 0.00 0.00 2.29
2695 3124 2.368548 AGTCTGGGTGGCAAATTTTTCC 59.631 45.455 0.00 0.00 0.00 3.13
2696 3125 2.103941 GTCTGGGTGGCAAATTTTTCCA 59.896 45.455 5.12 5.12 0.00 3.53
2697 3126 2.368221 TCTGGGTGGCAAATTTTTCCAG 59.632 45.455 8.73 10.75 40.99 3.86
2698 3127 1.202746 TGGGTGGCAAATTTTTCCAGC 60.203 47.619 21.49 21.49 44.98 4.85
2699 3128 1.522668 GGTGGCAAATTTTTCCAGCC 58.477 50.000 20.00 15.21 45.41 4.85
2701 3130 2.161831 GGCAAATTTTTCCAGCCGC 58.838 52.632 1.15 0.00 35.42 6.53
2702 3131 1.298157 GGCAAATTTTTCCAGCCGCC 61.298 55.000 1.15 0.00 35.42 6.13
2703 3132 0.320683 GCAAATTTTTCCAGCCGCCT 60.321 50.000 0.00 0.00 0.00 5.52
2704 3133 1.713597 CAAATTTTTCCAGCCGCCTC 58.286 50.000 0.00 0.00 0.00 4.70
2705 3134 0.608130 AAATTTTTCCAGCCGCCTCC 59.392 50.000 0.00 0.00 0.00 4.30
2706 3135 0.541764 AATTTTTCCAGCCGCCTCCA 60.542 50.000 0.00 0.00 0.00 3.86
2707 3136 1.250840 ATTTTTCCAGCCGCCTCCAC 61.251 55.000 0.00 0.00 0.00 4.02
2708 3137 3.860930 TTTTCCAGCCGCCTCCACC 62.861 63.158 0.00 0.00 0.00 4.61
2716 3145 4.431131 CGCCTCCACCCCAAGCAT 62.431 66.667 0.00 0.00 0.00 3.79
2717 3146 2.440980 GCCTCCACCCCAAGCATC 60.441 66.667 0.00 0.00 0.00 3.91
2718 3147 2.988839 GCCTCCACCCCAAGCATCT 61.989 63.158 0.00 0.00 0.00 2.90
2719 3148 1.225704 CCTCCACCCCAAGCATCTC 59.774 63.158 0.00 0.00 0.00 2.75
2720 3149 1.277580 CCTCCACCCCAAGCATCTCT 61.278 60.000 0.00 0.00 0.00 3.10
2721 3150 0.107312 CTCCACCCCAAGCATCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
2731 3160 4.391539 CATCTCTGCACCTCGACG 57.608 61.111 0.00 0.00 0.00 5.12
2732 3161 1.803289 CATCTCTGCACCTCGACGA 59.197 57.895 0.00 0.00 0.00 4.20
2733 3162 0.248417 CATCTCTGCACCTCGACGAG 60.248 60.000 18.08 18.08 0.00 4.18
2734 3163 1.999071 ATCTCTGCACCTCGACGAGC 61.999 60.000 19.55 9.92 0.00 5.03
2735 3164 2.982744 CTCTGCACCTCGACGAGCA 61.983 63.158 19.55 14.08 35.43 4.26
2736 3165 2.505777 CTGCACCTCGACGAGCAG 60.506 66.667 19.55 19.34 46.98 4.24
2737 3166 4.056125 TGCACCTCGACGAGCAGG 62.056 66.667 19.55 9.67 35.69 4.85
2738 3167 3.749064 GCACCTCGACGAGCAGGA 61.749 66.667 19.55 0.00 33.52 3.86
2739 3168 2.179517 CACCTCGACGAGCAGGAC 59.820 66.667 19.55 0.00 33.52 3.85
2740 3169 3.432588 ACCTCGACGAGCAGGACG 61.433 66.667 19.55 7.14 33.52 4.79
2741 3170 4.838486 CCTCGACGAGCAGGACGC 62.838 72.222 19.55 0.00 42.91 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.278857 GTCGCGGCTCATCGATGT 60.279 61.111 24.09 0.00 37.06 3.06
32 33 9.391006 GTATTAAGTGACAAGAATTATCCACCA 57.609 33.333 0.00 0.00 0.00 4.17
39 40 9.158233 CTTTCCGGTATTAAGTGACAAGAATTA 57.842 33.333 0.00 0.00 0.00 1.40
66 67 5.239525 AGAGTCCAATGGAAAGAAAGAAACG 59.760 40.000 2.31 0.00 31.38 3.60
109 110 8.344831 TCTTCTATGGCATTAAACATTGATTCG 58.655 33.333 4.78 0.00 31.06 3.34
172 174 6.664816 TGCTTTTTGGATGGAAGAATCATACT 59.335 34.615 0.00 0.00 0.00 2.12
173 175 6.866480 TGCTTTTTGGATGGAAGAATCATAC 58.134 36.000 0.00 0.00 0.00 2.39
174 176 7.396907 TCTTGCTTTTTGGATGGAAGAATCATA 59.603 33.333 0.00 0.00 37.08 2.15
220 222 4.341806 TCACCAAATTTCAGATGCTGTTGT 59.658 37.500 0.00 0.00 32.61 3.32
235 238 6.646267 CAAAGATTGGATTCCATCACCAAAT 58.354 36.000 6.15 0.00 44.91 2.32
357 362 8.548025 TCCCATTCTTTCTAACATTCACAGATA 58.452 33.333 0.00 0.00 0.00 1.98
362 367 7.454260 AGTTCCCATTCTTTCTAACATTCAC 57.546 36.000 0.00 0.00 0.00 3.18
368 373 9.449719 TCAATCTAAGTTCCCATTCTTTCTAAC 57.550 33.333 0.00 0.00 0.00 2.34
372 377 9.981114 TTTTTCAATCTAAGTTCCCATTCTTTC 57.019 29.630 0.00 0.00 0.00 2.62
396 401 7.124573 ACCTTAAATGTTTCAGCTCCTTTTT 57.875 32.000 0.00 0.00 0.00 1.94
397 402 6.731292 ACCTTAAATGTTTCAGCTCCTTTT 57.269 33.333 0.00 0.00 0.00 2.27
398 403 6.775629 TGTACCTTAAATGTTTCAGCTCCTTT 59.224 34.615 0.00 0.00 0.00 3.11
399 404 6.206829 GTGTACCTTAAATGTTTCAGCTCCTT 59.793 38.462 0.00 0.00 0.00 3.36
401 406 5.705905 AGTGTACCTTAAATGTTTCAGCTCC 59.294 40.000 0.00 0.00 0.00 4.70
402 407 6.426937 TGAGTGTACCTTAAATGTTTCAGCTC 59.573 38.462 0.00 0.00 0.00 4.09
404 409 6.554334 TGAGTGTACCTTAAATGTTTCAGC 57.446 37.500 0.00 0.00 0.00 4.26
488 496 2.937591 TCAACTAACTCCTTACGTGCG 58.062 47.619 0.00 0.00 0.00 5.34
494 502 5.938125 GCATTCTGGTTCAACTAACTCCTTA 59.062 40.000 0.00 0.00 38.23 2.69
528 536 8.865090 TCTACACCACAAAATATGGAAAAATGT 58.135 29.630 0.00 0.00 39.87 2.71
529 537 9.874205 ATCTACACCACAAAATATGGAAAAATG 57.126 29.630 0.00 0.00 39.87 2.32
553 562 5.353678 AGCTTGCATGTCTTGACTTCTTATC 59.646 40.000 1.14 0.00 0.00 1.75
574 583 2.806434 TGCAATCCATGGTTTACAGCT 58.194 42.857 12.58 0.00 0.00 4.24
622 712 1.604278 GCAATATGGAGAGGCCGAAAC 59.396 52.381 0.00 0.00 40.66 2.78
851 966 1.613630 TGAGGAAGGGGGTCAGCTC 60.614 63.158 0.00 0.00 0.00 4.09
863 978 2.046864 CCGCGAGAGGAGTGAGGAA 61.047 63.158 8.23 0.00 0.00 3.36
879 994 2.154462 GATGGAGAATAATGGCCACCG 58.846 52.381 8.16 0.00 32.42 4.94
1006 1181 1.101049 AACTCGTTGGTTGCACAGGG 61.101 55.000 0.00 0.00 0.00 4.45
1376 1583 8.964476 AGTCCACACATAATTTGATAGTAAGG 57.036 34.615 0.00 0.00 0.00 2.69
1381 1588 9.778993 CTTTCAAGTCCACACATAATTTGATAG 57.221 33.333 0.00 0.00 0.00 2.08
1403 1634 2.825532 TGCAAGATTAACCCCAGCTTTC 59.174 45.455 0.00 0.00 0.00 2.62
1423 1654 7.816031 AGTGCTTCAACCTATTCATCAAAATTG 59.184 33.333 0.00 0.00 0.00 2.32
1435 1667 6.059787 AGATCTTCAAGTGCTTCAACCTAT 57.940 37.500 0.00 0.00 0.00 2.57
1634 1955 0.035725 CATGCAGCAAGGAGACAGGA 60.036 55.000 0.00 0.00 0.00 3.86
1646 1967 4.260784 CGAGATAAGTTAAACCCATGCAGC 60.261 45.833 0.00 0.00 0.00 5.25
1649 1970 6.482308 ACATACGAGATAAGTTAAACCCATGC 59.518 38.462 0.00 0.00 0.00 4.06
1714 2054 9.699410 TTCTCTTTTGATTGGTATGGACATATT 57.301 29.630 0.00 0.00 0.00 1.28
1755 2095 9.645059 AGTATGTGTGTATAACATATCTGCATC 57.355 33.333 0.00 0.00 41.31 3.91
1812 2155 4.759693 TGCCGTATCAGATTTGTTTGAAGT 59.240 37.500 0.00 0.00 0.00 3.01
1813 2156 5.122239 TCTGCCGTATCAGATTTGTTTGAAG 59.878 40.000 0.00 0.00 38.11 3.02
1819 2162 2.501723 ACCTCTGCCGTATCAGATTTGT 59.498 45.455 0.00 0.00 41.73 2.83
1821 2164 2.158900 CCACCTCTGCCGTATCAGATTT 60.159 50.000 0.00 0.00 41.73 2.17
1822 2165 1.414181 CCACCTCTGCCGTATCAGATT 59.586 52.381 0.00 0.00 41.73 2.40
1823 2166 1.043816 CCACCTCTGCCGTATCAGAT 58.956 55.000 0.00 0.00 41.73 2.90
1824 2167 1.676678 GCCACCTCTGCCGTATCAGA 61.677 60.000 0.00 0.00 40.50 3.27
1825 2168 1.227380 GCCACCTCTGCCGTATCAG 60.227 63.158 0.00 0.00 35.46 2.90
1907 2276 7.780745 TGTTGGTGGTTAATAGGAAGAAAGAAA 59.219 33.333 0.00 0.00 0.00 2.52
1937 2336 4.923415 GGCTTAACTCCAGGCCAATATAT 58.077 43.478 5.01 0.00 43.59 0.86
1948 2347 1.213182 TGTTGTGTGGGCTTAACTCCA 59.787 47.619 0.00 0.00 0.00 3.86
1951 2350 2.297701 CTGTGTTGTGTGGGCTTAACT 58.702 47.619 0.00 0.00 0.00 2.24
1958 2357 1.756172 TTGGGCTGTGTTGTGTGGG 60.756 57.895 0.00 0.00 0.00 4.61
1978 2378 1.087501 GCGTTAAGAAGGGAGCTTGG 58.912 55.000 0.00 0.00 0.00 3.61
2017 2417 7.554959 TGGAAAGAGTACTCCTTAATCAGTT 57.445 36.000 19.38 0.91 32.51 3.16
2036 2436 4.934797 AGATGGGAGTGATCTTTGGAAA 57.065 40.909 0.00 0.00 0.00 3.13
2039 2439 4.500499 AGAAGATGGGAGTGATCTTTGG 57.500 45.455 0.00 0.00 39.72 3.28
2052 2452 5.853282 CACTTTTCGCAAACTAAGAAGATGG 59.147 40.000 0.00 0.00 0.00 3.51
2084 2486 2.197792 ACGATAAGTGACGCGCATAA 57.802 45.000 5.73 0.00 0.00 1.90
2085 2487 3.038017 GTTACGATAAGTGACGCGCATA 58.962 45.455 5.73 0.00 29.59 3.14
2093 2495 5.733620 AACTTCCAGGTTACGATAAGTGA 57.266 39.130 0.00 0.00 0.00 3.41
2099 2501 6.954487 AAAGAAAAACTTCCAGGTTACGAT 57.046 33.333 0.00 0.00 37.93 3.73
2275 2699 4.884247 TCGGTTTTTGTGTCCAACTTTTT 58.116 34.783 0.00 0.00 0.00 1.94
2280 2704 2.532235 GGTTCGGTTTTTGTGTCCAAC 58.468 47.619 0.00 0.00 0.00 3.77
2281 2705 1.132643 CGGTTCGGTTTTTGTGTCCAA 59.867 47.619 0.00 0.00 0.00 3.53
2288 2713 1.284715 GCTCCCGGTTCGGTTTTTG 59.715 57.895 0.00 0.00 46.80 2.44
2310 2736 3.639561 CCTCTTTCGAAAAGGGGGAAAAA 59.360 43.478 21.69 0.00 34.20 1.94
2315 2742 0.251165 TGCCTCTTTCGAAAAGGGGG 60.251 55.000 26.39 20.16 38.37 5.40
2351 2778 1.615392 AGAGGCATGGTTGTGCTTTTC 59.385 47.619 0.00 0.00 44.45 2.29
2356 2783 3.044059 GCGAGAGGCATGGTTGTGC 62.044 63.158 0.00 0.00 44.31 4.57
2473 2902 0.605319 TTTCATGAGAGGCGCGGTTT 60.605 50.000 8.83 0.00 0.00 3.27
2479 2908 2.589014 GTTTTGCTTTCATGAGAGGCG 58.411 47.619 14.60 0.00 0.00 5.52
2487 2916 1.372872 GGCGCGGTTTTGCTTTCAT 60.373 52.632 8.83 0.00 0.00 2.57
2488 2917 2.026879 GGCGCGGTTTTGCTTTCA 59.973 55.556 8.83 0.00 0.00 2.69
2502 2931 2.227388 AGTTTTGCTTTCATGAGAGGCG 59.773 45.455 14.60 0.00 0.00 5.52
2569 2998 7.524717 TTGGACCCAACAAATTTTTGAAAAA 57.475 28.000 5.47 5.47 40.55 1.94
2570 2999 7.524717 TTTGGACCCAACAAATTTTTGAAAA 57.475 28.000 9.88 0.00 40.55 2.29
2571 3000 7.524717 TTTTGGACCCAACAAATTTTTGAAA 57.475 28.000 9.88 0.00 40.55 2.69
2572 3001 6.349694 GCTTTTGGACCCAACAAATTTTTGAA 60.350 34.615 9.88 0.00 40.55 2.69
2573 3002 5.124617 GCTTTTGGACCCAACAAATTTTTGA 59.875 36.000 9.88 0.00 40.55 2.69
2574 3003 5.125257 AGCTTTTGGACCCAACAAATTTTTG 59.875 36.000 0.13 1.56 43.62 2.44
2575 3004 5.260424 AGCTTTTGGACCCAACAAATTTTT 58.740 33.333 0.13 0.00 37.62 1.94
2576 3005 4.854173 AGCTTTTGGACCCAACAAATTTT 58.146 34.783 0.13 0.00 37.62 1.82
2577 3006 4.502105 AGCTTTTGGACCCAACAAATTT 57.498 36.364 0.13 0.00 37.62 1.82
2578 3007 5.365314 TCTTAGCTTTTGGACCCAACAAATT 59.635 36.000 0.13 0.00 37.62 1.82
2579 3008 4.898861 TCTTAGCTTTTGGACCCAACAAAT 59.101 37.500 0.13 0.00 37.62 2.32
2580 3009 4.282496 TCTTAGCTTTTGGACCCAACAAA 58.718 39.130 0.13 0.00 35.46 2.83
2581 3010 3.888930 CTCTTAGCTTTTGGACCCAACAA 59.111 43.478 0.13 0.00 35.46 2.83
2582 3011 3.486383 CTCTTAGCTTTTGGACCCAACA 58.514 45.455 0.13 0.00 35.46 3.33
2583 3012 2.229062 GCTCTTAGCTTTTGGACCCAAC 59.771 50.000 0.13 0.00 38.45 3.77
2584 3013 2.158534 TGCTCTTAGCTTTTGGACCCAA 60.159 45.455 0.00 0.00 42.97 4.12
2585 3014 1.423541 TGCTCTTAGCTTTTGGACCCA 59.576 47.619 0.00 0.00 42.97 4.51
2586 3015 2.200373 TGCTCTTAGCTTTTGGACCC 57.800 50.000 0.00 0.00 42.97 4.46
2587 3016 3.615155 AGATGCTCTTAGCTTTTGGACC 58.385 45.455 0.00 0.00 42.97 4.46
2588 3017 3.625313 GGAGATGCTCTTAGCTTTTGGAC 59.375 47.826 0.00 0.00 42.97 4.02
2589 3018 3.264193 TGGAGATGCTCTTAGCTTTTGGA 59.736 43.478 0.00 0.00 42.97 3.53
2590 3019 3.614092 TGGAGATGCTCTTAGCTTTTGG 58.386 45.455 0.00 0.00 42.97 3.28
2591 3020 3.065095 GCTGGAGATGCTCTTAGCTTTTG 59.935 47.826 0.00 0.00 42.97 2.44
2592 3021 3.277715 GCTGGAGATGCTCTTAGCTTTT 58.722 45.455 0.00 0.00 42.97 2.27
2593 3022 2.421248 GGCTGGAGATGCTCTTAGCTTT 60.421 50.000 17.10 0.00 42.97 3.51
2594 3023 1.140652 GGCTGGAGATGCTCTTAGCTT 59.859 52.381 17.10 0.00 42.97 3.74
2595 3024 0.758123 GGCTGGAGATGCTCTTAGCT 59.242 55.000 17.10 0.00 42.97 3.32
2596 3025 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
2597 3026 0.749649 ACGGCTGGAGATGCTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
2598 3027 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
2599 3028 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
2600 3029 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2601 3030 1.078848 ACAACGGCTGGAGATGCTC 60.079 57.895 0.00 0.00 0.00 4.26
2602 3031 1.376424 CACAACGGCTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
2603 3032 3.044059 GCACAACGGCTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
2604 3033 2.401766 GGCACAACGGCTGGAGATG 61.402 63.158 0.00 0.00 37.17 2.90
2605 3034 2.045926 GGCACAACGGCTGGAGAT 60.046 61.111 0.00 0.00 37.17 2.75
2606 3035 4.329545 GGGCACAACGGCTGGAGA 62.330 66.667 0.00 0.00 40.90 3.71
2636 3065 2.137177 CTCCCCAGGAGGCCGAAAAA 62.137 60.000 0.00 0.00 45.43 1.94
2637 3066 2.530661 TCCCCAGGAGGCCGAAAA 60.531 61.111 0.00 0.00 0.00 2.29
2638 3067 3.009115 CTCCCCAGGAGGCCGAAA 61.009 66.667 0.00 0.00 45.43 3.46
2651 3080 3.774599 AAATCCGCCGATGCCTCCC 62.775 63.158 0.00 0.00 0.00 4.30
2652 3081 1.384222 AAAAATCCGCCGATGCCTCC 61.384 55.000 0.00 0.00 0.00 4.30
2653 3082 2.106844 AAAAATCCGCCGATGCCTC 58.893 52.632 0.00 0.00 0.00 4.70
2654 3083 4.337013 AAAAATCCGCCGATGCCT 57.663 50.000 0.00 0.00 0.00 4.75
2668 3097 2.151502 TTGCCACCCAGACTCAAAAA 57.848 45.000 0.00 0.00 0.00 1.94
2669 3098 2.151502 TTTGCCACCCAGACTCAAAA 57.848 45.000 0.00 0.00 0.00 2.44
2670 3099 2.380064 ATTTGCCACCCAGACTCAAA 57.620 45.000 0.00 0.00 0.00 2.69
2671 3100 2.380064 AATTTGCCACCCAGACTCAA 57.620 45.000 0.00 0.00 0.00 3.02
2672 3101 2.380064 AAATTTGCCACCCAGACTCA 57.620 45.000 0.00 0.00 0.00 3.41
2673 3102 3.554960 GGAAAAATTTGCCACCCAGACTC 60.555 47.826 0.00 0.00 0.00 3.36
2674 3103 2.368548 GGAAAAATTTGCCACCCAGACT 59.631 45.455 0.00 0.00 0.00 3.24
2675 3104 2.103941 TGGAAAAATTTGCCACCCAGAC 59.896 45.455 0.16 0.00 0.00 3.51
2676 3105 2.368221 CTGGAAAAATTTGCCACCCAGA 59.632 45.455 0.16 0.00 41.49 3.86
2677 3106 2.769893 CTGGAAAAATTTGCCACCCAG 58.230 47.619 0.16 8.76 34.52 4.45
2678 3107 1.202746 GCTGGAAAAATTTGCCACCCA 60.203 47.619 0.16 3.86 0.00 4.51
2679 3108 1.522668 GCTGGAAAAATTTGCCACCC 58.477 50.000 0.16 0.00 0.00 4.61
2680 3109 1.522668 GGCTGGAAAAATTTGCCACC 58.477 50.000 0.16 5.10 42.79 4.61
2681 3110 1.147473 CGGCTGGAAAAATTTGCCAC 58.853 50.000 14.71 0.00 43.38 5.01
2682 3111 0.602372 GCGGCTGGAAAAATTTGCCA 60.602 50.000 14.71 5.15 43.38 4.92
2683 3112 1.298157 GGCGGCTGGAAAAATTTGCC 61.298 55.000 0.00 6.44 40.14 4.52
2684 3113 0.320683 AGGCGGCTGGAAAAATTTGC 60.321 50.000 12.25 0.00 0.00 3.68
2685 3114 1.672737 GGAGGCGGCTGGAAAAATTTG 60.673 52.381 19.63 0.00 0.00 2.32
2686 3115 0.608130 GGAGGCGGCTGGAAAAATTT 59.392 50.000 19.63 0.00 0.00 1.82
2687 3116 0.541764 TGGAGGCGGCTGGAAAAATT 60.542 50.000 19.63 0.00 0.00 1.82
2688 3117 1.076549 TGGAGGCGGCTGGAAAAAT 59.923 52.632 19.63 0.00 0.00 1.82
2689 3118 1.901464 GTGGAGGCGGCTGGAAAAA 60.901 57.895 19.63 0.00 0.00 1.94
2690 3119 2.282180 GTGGAGGCGGCTGGAAAA 60.282 61.111 19.63 0.00 0.00 2.29
2691 3120 4.344865 GGTGGAGGCGGCTGGAAA 62.345 66.667 19.63 0.00 0.00 3.13
2699 3128 4.431131 ATGCTTGGGGTGGAGGCG 62.431 66.667 0.00 0.00 0.00 5.52
2700 3129 2.440980 GATGCTTGGGGTGGAGGC 60.441 66.667 0.00 0.00 0.00 4.70
2701 3130 1.225704 GAGATGCTTGGGGTGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
2702 3131 0.107312 CAGAGATGCTTGGGGTGGAG 60.107 60.000 0.00 0.00 0.00 3.86
2703 3132 1.993653 CAGAGATGCTTGGGGTGGA 59.006 57.895 0.00 0.00 0.00 4.02
2704 3133 1.751927 GCAGAGATGCTTGGGGTGG 60.752 63.158 0.00 0.00 0.00 4.61
2705 3134 1.001764 TGCAGAGATGCTTGGGGTG 60.002 57.895 1.53 0.00 35.49 4.61
2706 3135 1.001641 GTGCAGAGATGCTTGGGGT 60.002 57.895 1.53 0.00 35.49 4.95
2707 3136 1.751927 GGTGCAGAGATGCTTGGGG 60.752 63.158 1.53 0.00 35.49 4.96
2708 3137 0.747283 GAGGTGCAGAGATGCTTGGG 60.747 60.000 1.53 0.00 35.49 4.12
2709 3138 1.088340 CGAGGTGCAGAGATGCTTGG 61.088 60.000 1.53 0.00 35.49 3.61
2710 3139 0.108472 TCGAGGTGCAGAGATGCTTG 60.108 55.000 1.53 0.00 35.49 4.01
2711 3140 0.108424 GTCGAGGTGCAGAGATGCTT 60.108 55.000 1.53 0.00 35.49 3.91
2712 3141 1.515020 GTCGAGGTGCAGAGATGCT 59.485 57.895 1.53 0.00 35.49 3.79
2713 3142 1.875813 CGTCGAGGTGCAGAGATGC 60.876 63.158 0.00 0.00 0.00 3.91
2714 3143 0.248417 CTCGTCGAGGTGCAGAGATG 60.248 60.000 14.68 0.00 0.00 2.90
2715 3144 1.999071 GCTCGTCGAGGTGCAGAGAT 61.999 60.000 23.09 0.00 0.00 2.75
2716 3145 2.691771 GCTCGTCGAGGTGCAGAGA 61.692 63.158 23.09 0.00 0.00 3.10
2717 3146 2.202544 GCTCGTCGAGGTGCAGAG 60.203 66.667 23.09 6.81 0.00 3.35
2718 3147 2.983592 TGCTCGTCGAGGTGCAGA 60.984 61.111 25.66 9.00 0.00 4.26
2719 3148 2.505777 CTGCTCGTCGAGGTGCAG 60.506 66.667 33.88 33.88 45.15 4.41
2720 3149 4.056125 CCTGCTCGTCGAGGTGCA 62.056 66.667 26.99 26.99 0.00 4.57
2721 3150 3.749064 TCCTGCTCGTCGAGGTGC 61.749 66.667 23.09 21.56 0.00 5.01
2722 3151 2.179517 GTCCTGCTCGTCGAGGTG 59.820 66.667 23.09 3.83 0.00 4.00
2723 3152 3.432588 CGTCCTGCTCGTCGAGGT 61.433 66.667 23.09 0.00 0.00 3.85
2724 3153 4.838486 GCGTCCTGCTCGTCGAGG 62.838 72.222 23.09 8.47 41.73 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.