Multiple sequence alignment - TraesCS1A01G418900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G418900 chr1A 100.000 3220 0 0 1 3220 575965659 575968878 0.000000e+00 5947.0
1 TraesCS1A01G418900 chr1A 96.377 276 8 2 1 274 336453429 336453154 1.560000e-123 453.0
2 TraesCS1A01G418900 chr1A 96.364 275 9 1 1 274 575957764 575958038 5.610000e-123 451.0
3 TraesCS1A01G418900 chr1A 100.000 155 0 0 3532 3686 575969190 575969344 1.680000e-73 287.0
4 TraesCS1A01G418900 chr1A 92.523 107 8 0 366 472 495708018 495707912 1.770000e-33 154.0
5 TraesCS1A01G418900 chr1D 92.192 2715 147 29 471 3149 479610449 479613134 0.000000e+00 3779.0
6 TraesCS1A01G418900 chr1D 88.663 688 42 19 2534 3220 479614130 479614782 0.000000e+00 806.0
7 TraesCS1A01G418900 chr1D 98.795 83 1 0 3604 3686 479617608 479617690 8.250000e-32 148.0
8 TraesCS1A01G418900 chr1D 93.103 87 5 1 282 367 479610364 479610450 3.860000e-25 126.0
9 TraesCS1A01G418900 chr1D 96.923 65 1 1 3155 3219 479614069 479614132 1.400000e-19 108.0
10 TraesCS1A01G418900 chr1D 97.143 35 0 1 3538 3571 479615100 479615134 1.430000e-04 58.4
11 TraesCS1A01G418900 chr1B 92.100 2557 147 25 662 3177 667833077 667830535 0.000000e+00 3552.0
12 TraesCS1A01G418900 chr1B 97.297 37 1 0 3532 3568 667830231 667830195 3.070000e-06 63.9
13 TraesCS1A01G418900 chr6A 97.091 275 7 1 1 274 529166883 529167157 2.590000e-126 462.0
14 TraesCS1A01G418900 chr6A 96.364 275 9 1 1 274 338334312 338334038 5.610000e-123 451.0
15 TraesCS1A01G418900 chr6A 96.364 275 9 1 1 274 411014166 411013892 5.610000e-123 451.0
16 TraesCS1A01G418900 chr5A 97.091 275 7 1 1 274 280294477 280294751 2.590000e-126 462.0
17 TraesCS1A01G418900 chr5A 96.727 275 8 1 1 274 280302590 280302864 1.210000e-124 457.0
18 TraesCS1A01G418900 chr5A 90.826 109 10 0 364 472 550722774 550722882 2.970000e-31 147.0
19 TraesCS1A01G418900 chr4A 97.091 275 7 1 1 274 109585312 109585038 2.590000e-126 462.0
20 TraesCS1A01G418900 chr4A 96.364 275 9 1 1 274 109592953 109592679 5.610000e-123 451.0
21 TraesCS1A01G418900 chr4A 90.435 115 9 2 362 475 494902399 494902286 2.290000e-32 150.0
22 TraesCS1A01G418900 chr3D 89.744 117 11 1 362 477 326723586 326723702 8.250000e-32 148.0
23 TraesCS1A01G418900 chr3B 90.179 112 9 2 365 475 110638839 110638729 1.070000e-30 145.0
24 TraesCS1A01G418900 chr2D 90.741 108 10 0 366 473 621132152 621132259 1.070000e-30 145.0
25 TraesCS1A01G418900 chr2A 88.333 120 13 1 355 474 59365117 59365235 3.840000e-30 143.0
26 TraesCS1A01G418900 chr4D 88.696 115 13 0 366 480 28421641 28421755 1.380000e-29 141.0
27 TraesCS1A01G418900 chr6B 86.885 122 16 0 355 476 333895508 333895387 1.790000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G418900 chr1A 575965659 575969344 3685 False 3117.000000 5947 100.000000 1 3686 2 chr1A.!!$F2 3685
1 TraesCS1A01G418900 chr1D 479610364 479617690 7326 False 837.566667 3779 94.469833 282 3686 6 chr1D.!!$F1 3404
2 TraesCS1A01G418900 chr1B 667830195 667833077 2882 True 1807.950000 3552 94.698500 662 3568 2 chr1B.!!$R1 2906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.039798 TTCACACGCTACTGACCGAC 60.040 55.0 0.00 0.0 0.00 4.79 F
150 151 0.106149 GTCCCTATAGGTTGGTGCCG 59.894 60.0 17.72 0.0 36.75 5.69 F
153 154 0.180406 CCTATAGGTTGGTGCCGCTT 59.820 55.0 10.96 0.0 0.00 4.68 F
173 174 0.249120 TGGGTTCACGACTAGCCATG 59.751 55.0 0.00 0.0 37.03 3.66 F
174 175 0.249398 GGGTTCACGACTAGCCATGT 59.751 55.0 0.00 0.0 32.24 3.21 F
364 365 0.252696 AGTGCACCCCCATAGTCTCA 60.253 55.0 14.63 0.0 0.00 3.27 F
2316 2325 0.678395 AGCATCTCATAGCCTGGACG 59.322 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1502 1.122019 AGAGAACGCCAGGGTCTTGT 61.122 55.000 0.00 0.0 0.00 3.16 R
1923 1932 1.197812 GGCCGAGGTAGAACCCTTTA 58.802 55.000 0.00 0.0 39.75 1.85 R
2059 2068 2.030562 CGACGTGGTGCTCCCTTT 59.969 61.111 1.59 0.0 0.00 3.11 R
2176 2185 1.332195 GGCTGCTTGGAAAGGAAACT 58.668 50.000 0.00 0.0 46.16 2.66 R
2202 2211 1.035932 ACGGGTCCAGGATGACGTAG 61.036 60.000 12.66 0.0 39.69 3.51 R
2330 2339 1.573108 CATGTACTCCTCCCTGTGGT 58.427 55.000 0.00 0.0 0.00 4.16 R
3614 7704 1.880027 GTGACAAAGGCCATTCGTCTT 59.120 47.619 5.01 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.494918 CGGTGACATCCGGAGTCC 59.505 66.667 22.99 16.58 45.88 3.85
26 27 2.052690 CGGTGACATCCGGAGTCCT 61.053 63.158 22.99 0.84 45.88 3.85
27 28 1.517832 GGTGACATCCGGAGTCCTG 59.482 63.158 22.99 14.43 35.15 3.86
28 29 1.153549 GTGACATCCGGAGTCCTGC 60.154 63.158 22.99 13.80 35.15 4.85
29 30 2.359169 TGACATCCGGAGTCCTGCC 61.359 63.158 22.99 6.82 35.15 4.85
30 31 2.039624 ACATCCGGAGTCCTGCCT 59.960 61.111 11.34 0.00 0.00 4.75
31 32 0.755698 GACATCCGGAGTCCTGCCTA 60.756 60.000 11.34 0.00 0.00 3.93
32 33 0.757188 ACATCCGGAGTCCTGCCTAG 60.757 60.000 11.34 0.00 0.00 3.02
33 34 1.834822 ATCCGGAGTCCTGCCTAGC 60.835 63.158 11.34 0.00 0.00 3.42
34 35 3.541713 CCGGAGTCCTGCCTAGCC 61.542 72.222 7.77 0.00 0.00 3.93
35 36 2.443016 CGGAGTCCTGCCTAGCCT 60.443 66.667 7.77 0.00 0.00 4.58
36 37 2.790791 CGGAGTCCTGCCTAGCCTG 61.791 68.421 7.77 0.00 0.00 4.85
37 38 2.503546 GAGTCCTGCCTAGCCTGC 59.496 66.667 0.00 0.00 0.00 4.85
38 39 2.040278 AGTCCTGCCTAGCCTGCT 59.960 61.111 0.00 0.00 0.00 4.24
39 40 0.757188 GAGTCCTGCCTAGCCTGCTA 60.757 60.000 0.00 0.00 0.00 3.49
40 41 1.045911 AGTCCTGCCTAGCCTGCTAC 61.046 60.000 0.00 0.00 0.00 3.58
41 42 1.001631 TCCTGCCTAGCCTGCTACA 59.998 57.895 0.00 0.00 0.00 2.74
42 43 1.045350 TCCTGCCTAGCCTGCTACAG 61.045 60.000 8.90 8.90 0.00 2.74
43 44 1.227497 CTGCCTAGCCTGCTACAGC 60.227 63.158 8.72 8.72 42.50 4.40
44 45 2.110006 GCCTAGCCTGCTACAGCC 59.890 66.667 0.00 0.00 41.18 4.85
45 46 2.419198 CCTAGCCTGCTACAGCCG 59.581 66.667 0.00 0.00 41.18 5.52
46 47 2.419198 CTAGCCTGCTACAGCCGG 59.581 66.667 7.27 7.27 46.49 6.13
47 48 3.154473 TAGCCTGCTACAGCCGGG 61.154 66.667 12.82 9.28 44.32 5.73
49 50 4.410400 GCCTGCTACAGCCGGGTT 62.410 66.667 1.64 0.00 44.32 4.11
50 51 2.125106 CCTGCTACAGCCGGGTTC 60.125 66.667 1.64 0.00 41.06 3.62
51 52 2.125106 CTGCTACAGCCGGGTTCC 60.125 66.667 1.64 0.00 41.18 3.62
52 53 3.682292 CTGCTACAGCCGGGTTCCC 62.682 68.421 1.64 0.00 41.18 3.97
61 62 3.771160 CGGGTTCCCGGAGTCCTG 61.771 72.222 21.10 2.82 44.99 3.86
62 63 2.606826 GGGTTCCCGGAGTCCTGT 60.607 66.667 0.73 0.00 0.00 4.00
63 64 2.222013 GGGTTCCCGGAGTCCTGTT 61.222 63.158 0.73 0.00 0.00 3.16
64 65 0.906282 GGGTTCCCGGAGTCCTGTTA 60.906 60.000 0.73 0.00 0.00 2.41
65 66 0.535797 GGTTCCCGGAGTCCTGTTAG 59.464 60.000 0.73 0.00 0.00 2.34
66 67 0.108281 GTTCCCGGAGTCCTGTTAGC 60.108 60.000 0.73 0.00 0.00 3.09
67 68 1.262640 TTCCCGGAGTCCTGTTAGCC 61.263 60.000 0.73 0.00 0.00 3.93
68 69 2.732619 CCCGGAGTCCTGTTAGCCC 61.733 68.421 0.73 0.00 0.00 5.19
69 70 1.987855 CCGGAGTCCTGTTAGCCCA 60.988 63.158 7.77 0.00 0.00 5.36
70 71 1.517832 CGGAGTCCTGTTAGCCCAG 59.482 63.158 7.77 0.00 0.00 4.45
71 72 1.258445 CGGAGTCCTGTTAGCCCAGT 61.258 60.000 7.77 0.00 0.00 4.00
72 73 0.250513 GGAGTCCTGTTAGCCCAGTG 59.749 60.000 0.41 0.00 0.00 3.66
73 74 0.391793 GAGTCCTGTTAGCCCAGTGC 60.392 60.000 0.00 0.00 41.71 4.40
83 84 4.473520 CCCAGTGCTACAGCCCGG 62.474 72.222 0.00 0.00 41.18 5.73
84 85 3.390521 CCAGTGCTACAGCCCGGA 61.391 66.667 0.73 0.00 41.18 5.14
85 86 2.735772 CCAGTGCTACAGCCCGGAT 61.736 63.158 0.73 0.00 41.18 4.18
86 87 1.221840 CAGTGCTACAGCCCGGATT 59.778 57.895 0.73 0.00 41.18 3.01
87 88 0.811616 CAGTGCTACAGCCCGGATTC 60.812 60.000 0.73 0.00 41.18 2.52
88 89 1.220749 GTGCTACAGCCCGGATTCA 59.779 57.895 0.73 0.00 41.18 2.57
89 90 1.090052 GTGCTACAGCCCGGATTCAC 61.090 60.000 0.73 0.00 41.18 3.18
90 91 1.220749 GCTACAGCCCGGATTCACA 59.779 57.895 0.73 0.00 34.31 3.58
91 92 1.090052 GCTACAGCCCGGATTCACAC 61.090 60.000 0.73 0.00 34.31 3.82
92 93 0.806102 CTACAGCCCGGATTCACACG 60.806 60.000 0.73 0.00 0.00 4.49
93 94 2.845752 TACAGCCCGGATTCACACGC 62.846 60.000 0.73 0.00 0.00 5.34
94 95 3.706373 AGCCCGGATTCACACGCT 61.706 61.111 0.73 0.00 0.00 5.07
95 96 2.185867 GCCCGGATTCACACGCTA 59.814 61.111 0.73 0.00 0.00 4.26
96 97 2.171725 GCCCGGATTCACACGCTAC 61.172 63.158 0.73 0.00 0.00 3.58
97 98 1.515954 CCCGGATTCACACGCTACT 59.484 57.895 0.73 0.00 0.00 2.57
98 99 0.806102 CCCGGATTCACACGCTACTG 60.806 60.000 0.73 0.00 0.00 2.74
99 100 0.172578 CCGGATTCACACGCTACTGA 59.827 55.000 0.00 0.00 0.00 3.41
100 101 1.269166 CGGATTCACACGCTACTGAC 58.731 55.000 0.00 0.00 0.00 3.51
101 102 1.641577 GGATTCACACGCTACTGACC 58.358 55.000 0.00 0.00 0.00 4.02
102 103 1.269166 GATTCACACGCTACTGACCG 58.731 55.000 0.00 0.00 0.00 4.79
103 104 0.885879 ATTCACACGCTACTGACCGA 59.114 50.000 0.00 0.00 0.00 4.69
104 105 0.039798 TTCACACGCTACTGACCGAC 60.040 55.000 0.00 0.00 0.00 4.79
105 106 1.167781 TCACACGCTACTGACCGACA 61.168 55.000 0.00 0.00 0.00 4.35
106 107 0.109272 CACACGCTACTGACCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
107 108 0.109272 ACACGCTACTGACCGACATG 60.109 55.000 0.00 0.00 0.00 3.21
108 109 1.153823 ACGCTACTGACCGACATGC 60.154 57.895 0.00 0.00 0.00 4.06
109 110 1.139734 CGCTACTGACCGACATGCT 59.860 57.895 0.00 0.00 0.00 3.79
110 111 0.867753 CGCTACTGACCGACATGCTC 60.868 60.000 0.00 0.00 0.00 4.26
111 112 0.867753 GCTACTGACCGACATGCTCG 60.868 60.000 9.75 9.75 42.54 5.03
112 113 0.733150 CTACTGACCGACATGCTCGA 59.267 55.000 16.06 0.00 46.14 4.04
113 114 1.335182 CTACTGACCGACATGCTCGAT 59.665 52.381 16.06 2.31 46.14 3.59
114 115 0.179127 ACTGACCGACATGCTCGATG 60.179 55.000 16.06 6.05 46.14 3.84
116 117 0.458370 TGACCGACATGCTCGATGTG 60.458 55.000 16.06 5.23 45.90 3.21
117 118 0.179137 GACCGACATGCTCGATGTGA 60.179 55.000 16.06 0.00 45.90 3.58
118 119 0.461548 ACCGACATGCTCGATGTGAT 59.538 50.000 16.06 0.00 45.90 3.06
119 120 1.134699 ACCGACATGCTCGATGTGATT 60.135 47.619 16.06 0.00 45.90 2.57
120 121 1.524355 CCGACATGCTCGATGTGATTC 59.476 52.381 16.06 0.00 45.90 2.52
121 122 2.195922 CGACATGCTCGATGTGATTCA 58.804 47.619 10.86 0.00 45.90 2.57
122 123 2.798847 CGACATGCTCGATGTGATTCAT 59.201 45.455 10.86 0.00 45.90 2.57
123 124 3.362693 CGACATGCTCGATGTGATTCATG 60.363 47.826 10.86 0.00 45.90 3.07
124 125 3.538591 ACATGCTCGATGTGATTCATGT 58.461 40.909 0.00 0.00 44.12 3.21
125 126 4.696455 ACATGCTCGATGTGATTCATGTA 58.304 39.130 4.12 0.00 44.12 2.29
126 127 5.303165 ACATGCTCGATGTGATTCATGTAT 58.697 37.500 4.12 0.00 44.12 2.29
127 128 5.178809 ACATGCTCGATGTGATTCATGTATG 59.821 40.000 4.12 0.00 44.12 2.39
128 129 3.495753 TGCTCGATGTGATTCATGTATGC 59.504 43.478 0.00 0.00 36.83 3.14
129 130 3.495753 GCTCGATGTGATTCATGTATGCA 59.504 43.478 0.00 0.00 36.83 3.96
130 131 4.153655 GCTCGATGTGATTCATGTATGCAT 59.846 41.667 3.79 3.79 36.83 3.96
142 143 5.426689 CATGTATGCATGTCCCTATAGGT 57.573 43.478 17.72 0.00 45.48 3.08
143 144 5.809001 CATGTATGCATGTCCCTATAGGTT 58.191 41.667 17.72 0.00 45.48 3.50
144 145 5.227569 TGTATGCATGTCCCTATAGGTTG 57.772 43.478 17.72 10.21 36.75 3.77
145 146 3.795688 ATGCATGTCCCTATAGGTTGG 57.204 47.619 17.72 2.65 36.75 3.77
146 147 2.487775 TGCATGTCCCTATAGGTTGGT 58.512 47.619 17.72 0.00 36.75 3.67
147 148 2.172505 TGCATGTCCCTATAGGTTGGTG 59.827 50.000 17.72 11.50 36.75 4.17
148 149 2.851195 CATGTCCCTATAGGTTGGTGC 58.149 52.381 17.72 2.03 36.75 5.01
149 150 1.209621 TGTCCCTATAGGTTGGTGCC 58.790 55.000 17.72 0.00 36.75 5.01
150 151 0.106149 GTCCCTATAGGTTGGTGCCG 59.894 60.000 17.72 0.00 36.75 5.69
151 152 1.227853 CCCTATAGGTTGGTGCCGC 60.228 63.158 17.72 0.00 0.00 6.53
152 153 1.696097 CCCTATAGGTTGGTGCCGCT 61.696 60.000 17.72 0.00 0.00 5.52
153 154 0.180406 CCTATAGGTTGGTGCCGCTT 59.820 55.000 10.96 0.00 0.00 4.68
154 155 1.408266 CCTATAGGTTGGTGCCGCTTT 60.408 52.381 10.96 0.00 0.00 3.51
155 156 1.670811 CTATAGGTTGGTGCCGCTTTG 59.329 52.381 0.00 0.00 0.00 2.77
156 157 0.965363 ATAGGTTGGTGCCGCTTTGG 60.965 55.000 0.00 0.00 42.50 3.28
157 158 3.989787 GGTTGGTGCCGCTTTGGG 61.990 66.667 0.00 0.00 38.63 4.12
158 159 3.223589 GTTGGTGCCGCTTTGGGT 61.224 61.111 0.00 0.00 38.63 4.51
159 160 2.443016 TTGGTGCCGCTTTGGGTT 60.443 55.556 0.00 0.00 38.63 4.11
160 161 2.494530 TTGGTGCCGCTTTGGGTTC 61.495 57.895 0.00 0.00 38.63 3.62
161 162 2.909965 GGTGCCGCTTTGGGTTCA 60.910 61.111 0.00 0.00 38.63 3.18
162 163 2.335011 GTGCCGCTTTGGGTTCAC 59.665 61.111 0.00 0.00 38.63 3.18
163 164 3.283684 TGCCGCTTTGGGTTCACG 61.284 61.111 0.00 0.00 38.63 4.35
164 165 2.975799 GCCGCTTTGGGTTCACGA 60.976 61.111 0.00 0.00 38.63 4.35
165 166 2.943653 CCGCTTTGGGTTCACGAC 59.056 61.111 0.00 0.00 0.00 4.34
166 167 1.597027 CCGCTTTGGGTTCACGACT 60.597 57.895 0.00 0.00 0.00 4.18
167 168 0.320073 CCGCTTTGGGTTCACGACTA 60.320 55.000 0.00 0.00 0.00 2.59
168 169 1.068474 CGCTTTGGGTTCACGACTAG 58.932 55.000 0.00 0.00 0.00 2.57
169 170 0.796927 GCTTTGGGTTCACGACTAGC 59.203 55.000 0.00 0.00 0.00 3.42
170 171 1.439679 CTTTGGGTTCACGACTAGCC 58.560 55.000 0.00 0.00 0.00 3.93
171 172 0.759959 TTTGGGTTCACGACTAGCCA 59.240 50.000 0.00 0.00 39.97 4.75
172 173 0.981183 TTGGGTTCACGACTAGCCAT 59.019 50.000 7.05 0.00 41.19 4.40
173 174 0.249120 TGGGTTCACGACTAGCCATG 59.751 55.000 0.00 0.00 37.03 3.66
174 175 0.249398 GGGTTCACGACTAGCCATGT 59.751 55.000 0.00 0.00 32.24 3.21
175 176 1.641577 GGTTCACGACTAGCCATGTC 58.358 55.000 0.00 0.00 0.00 3.06
186 187 2.035626 CCATGTCGGCCCAGGTTT 59.964 61.111 0.00 0.00 0.00 3.27
187 188 1.606313 CCATGTCGGCCCAGGTTTT 60.606 57.895 0.00 0.00 0.00 2.43
188 189 1.184970 CCATGTCGGCCCAGGTTTTT 61.185 55.000 0.00 0.00 0.00 1.94
207 208 5.422666 TTTTTGTCATATGGATGCTAGCG 57.577 39.130 10.77 0.00 32.62 4.26
208 209 4.335400 TTTGTCATATGGATGCTAGCGA 57.665 40.909 10.77 0.00 32.62 4.93
209 210 3.303881 TGTCATATGGATGCTAGCGAC 57.696 47.619 10.77 9.02 32.62 5.19
210 211 2.627699 TGTCATATGGATGCTAGCGACA 59.372 45.455 10.77 11.54 32.62 4.35
211 212 2.989840 GTCATATGGATGCTAGCGACAC 59.010 50.000 10.77 0.81 32.62 3.67
212 213 2.893489 TCATATGGATGCTAGCGACACT 59.107 45.455 10.77 0.00 32.62 3.55
213 214 4.079253 TCATATGGATGCTAGCGACACTA 58.921 43.478 10.77 0.00 32.62 2.74
214 215 4.706962 TCATATGGATGCTAGCGACACTAT 59.293 41.667 10.77 7.20 32.62 2.12
215 216 3.584406 ATGGATGCTAGCGACACTATC 57.416 47.619 10.77 6.09 0.00 2.08
216 217 2.306847 TGGATGCTAGCGACACTATCA 58.693 47.619 10.77 0.00 31.82 2.15
217 218 2.893489 TGGATGCTAGCGACACTATCAT 59.107 45.455 10.77 0.00 39.77 2.45
218 219 4.079253 TGGATGCTAGCGACACTATCATA 58.921 43.478 10.77 0.00 37.73 2.15
219 220 4.706962 TGGATGCTAGCGACACTATCATAT 59.293 41.667 10.77 0.00 37.73 1.78
220 221 5.885912 TGGATGCTAGCGACACTATCATATA 59.114 40.000 10.77 0.00 37.73 0.86
221 222 6.183360 TGGATGCTAGCGACACTATCATATAC 60.183 42.308 10.77 0.00 37.73 1.47
222 223 6.183360 GGATGCTAGCGACACTATCATATACA 60.183 42.308 10.77 0.00 37.73 2.29
223 224 6.759497 TGCTAGCGACACTATCATATACAT 57.241 37.500 10.77 0.00 0.00 2.29
224 225 6.555315 TGCTAGCGACACTATCATATACATG 58.445 40.000 10.77 0.00 0.00 3.21
225 226 6.374333 TGCTAGCGACACTATCATATACATGA 59.626 38.462 10.77 0.00 45.15 3.07
226 227 6.909895 GCTAGCGACACTATCATATACATGAG 59.090 42.308 0.00 0.00 44.30 2.90
227 228 5.645624 AGCGACACTATCATATACATGAGC 58.354 41.667 0.00 0.00 44.30 4.26
228 229 4.800993 GCGACACTATCATATACATGAGCC 59.199 45.833 0.00 0.00 44.30 4.70
229 230 5.622233 GCGACACTATCATATACATGAGCCA 60.622 44.000 0.00 0.00 44.30 4.75
230 231 6.389906 CGACACTATCATATACATGAGCCAA 58.610 40.000 0.00 0.00 44.30 4.52
231 232 6.868339 CGACACTATCATATACATGAGCCAAA 59.132 38.462 0.00 0.00 44.30 3.28
232 233 7.384932 CGACACTATCATATACATGAGCCAAAA 59.615 37.037 0.00 0.00 44.30 2.44
233 234 8.613060 ACACTATCATATACATGAGCCAAAAG 57.387 34.615 0.00 0.00 44.30 2.27
234 235 7.663081 ACACTATCATATACATGAGCCAAAAGG 59.337 37.037 0.00 0.00 44.30 3.11
235 236 5.972107 ATCATATACATGAGCCAAAAGGC 57.028 39.130 0.00 0.00 44.30 4.35
236 237 3.814842 TCATATACATGAGCCAAAAGGCG 59.185 43.478 0.00 0.00 36.22 5.52
237 238 0.740737 ATACATGAGCCAAAAGGCGC 59.259 50.000 0.00 0.00 40.23 6.53
239 240 1.289694 CATGAGCCAAAAGGCGCAA 59.710 52.632 16.41 1.50 46.40 4.85
240 241 0.319727 CATGAGCCAAAAGGCGCAAA 60.320 50.000 16.41 0.00 46.40 3.68
241 242 0.319813 ATGAGCCAAAAGGCGCAAAC 60.320 50.000 16.41 0.00 46.40 2.93
242 243 2.016165 GAGCCAAAAGGCGCAAACG 61.016 57.895 10.83 0.00 44.07 3.60
243 244 3.035503 GCCAAAAGGCGCAAACGG 61.036 61.111 10.83 3.45 40.57 4.44
244 245 2.415426 CCAAAAGGCGCAAACGGT 59.585 55.556 10.83 0.00 40.57 4.83
245 246 1.660264 CCAAAAGGCGCAAACGGTC 60.660 57.895 10.83 0.00 40.57 4.79
246 247 1.660264 CAAAAGGCGCAAACGGTCC 60.660 57.895 10.83 0.00 40.57 4.46
247 248 2.852180 AAAAGGCGCAAACGGTCCC 61.852 57.895 10.83 0.00 40.57 4.46
259 260 3.793888 GGTCCCGGGCCAGGTAAG 61.794 72.222 24.17 5.72 0.00 2.34
260 261 3.793888 GTCCCGGGCCAGGTAAGG 61.794 72.222 21.37 5.33 0.00 2.69
261 262 4.342086 TCCCGGGCCAGGTAAGGT 62.342 66.667 21.37 0.00 0.00 3.50
262 263 4.109675 CCCGGGCCAGGTAAGGTG 62.110 72.222 21.37 0.00 0.00 4.00
263 264 3.006728 CCGGGCCAGGTAAGGTGA 61.007 66.667 14.74 0.00 0.00 4.02
264 265 2.267961 CGGGCCAGGTAAGGTGAC 59.732 66.667 4.39 0.00 0.00 3.67
265 266 2.589157 CGGGCCAGGTAAGGTGACA 61.589 63.158 4.39 0.00 0.00 3.58
266 267 1.002502 GGGCCAGGTAAGGTGACAC 60.003 63.158 4.39 0.00 0.00 3.67
267 268 1.002502 GGCCAGGTAAGGTGACACC 60.003 63.158 17.43 17.43 38.99 4.16
268 269 1.002502 GCCAGGTAAGGTGACACCC 60.003 63.158 21.32 5.91 39.75 4.61
269 270 1.295423 CCAGGTAAGGTGACACCCG 59.705 63.158 21.32 3.22 39.75 5.28
270 271 1.477685 CCAGGTAAGGTGACACCCGT 61.478 60.000 21.32 12.03 39.75 5.28
271 272 0.320421 CAGGTAAGGTGACACCCGTG 60.320 60.000 21.32 13.29 39.75 4.94
272 273 1.004200 GGTAAGGTGACACCCGTGG 60.004 63.158 21.32 0.00 39.75 4.94
273 274 1.004200 GTAAGGTGACACCCGTGGG 60.004 63.158 21.32 2.58 39.75 4.61
283 284 4.016706 CCCGTGGGTCCTGACACC 62.017 72.222 0.00 0.00 32.63 4.16
284 285 3.238497 CCGTGGGTCCTGACACCA 61.238 66.667 0.00 0.68 38.32 4.17
285 286 2.813726 CCGTGGGTCCTGACACCAA 61.814 63.158 8.47 0.00 38.32 3.67
286 287 1.597027 CGTGGGTCCTGACACCAAC 60.597 63.158 8.47 0.00 38.32 3.77
287 288 1.837090 GTGGGTCCTGACACCAACT 59.163 57.895 8.47 0.00 37.39 3.16
288 289 1.053424 GTGGGTCCTGACACCAACTA 58.947 55.000 8.47 0.00 37.39 2.24
289 290 1.418637 GTGGGTCCTGACACCAACTAA 59.581 52.381 8.47 0.00 37.39 2.24
290 291 1.418637 TGGGTCCTGACACCAACTAAC 59.581 52.381 0.00 0.00 38.32 2.34
346 347 7.948363 CCACGTACGTAACAATTCTTAAGAAAG 59.052 37.037 22.34 17.97 37.61 2.62
356 357 1.777878 TCTTAAGAAAGTGCACCCCCA 59.222 47.619 14.63 0.00 34.13 4.96
357 358 2.378547 TCTTAAGAAAGTGCACCCCCAT 59.621 45.455 14.63 0.00 34.13 4.00
358 359 3.589735 TCTTAAGAAAGTGCACCCCCATA 59.410 43.478 14.63 0.00 34.13 2.74
359 360 2.514458 AAGAAAGTGCACCCCCATAG 57.486 50.000 14.63 0.00 0.00 2.23
360 361 1.372501 AGAAAGTGCACCCCCATAGT 58.627 50.000 14.63 0.00 0.00 2.12
361 362 1.282157 AGAAAGTGCACCCCCATAGTC 59.718 52.381 14.63 0.00 0.00 2.59
362 363 1.282157 GAAAGTGCACCCCCATAGTCT 59.718 52.381 14.63 0.00 0.00 3.24
363 364 0.912486 AAGTGCACCCCCATAGTCTC 59.088 55.000 14.63 0.00 0.00 3.36
364 365 0.252696 AGTGCACCCCCATAGTCTCA 60.253 55.000 14.63 0.00 0.00 3.27
365 366 0.839946 GTGCACCCCCATAGTCTCAT 59.160 55.000 5.22 0.00 0.00 2.90
366 367 2.047061 GTGCACCCCCATAGTCTCATA 58.953 52.381 5.22 0.00 0.00 2.15
367 368 2.047061 TGCACCCCCATAGTCTCATAC 58.953 52.381 0.00 0.00 0.00 2.39
368 369 2.330216 GCACCCCCATAGTCTCATACT 58.670 52.381 0.00 0.00 42.62 2.12
369 370 2.300437 GCACCCCCATAGTCTCATACTC 59.700 54.545 0.00 0.00 39.80 2.59
370 371 2.900546 CACCCCCATAGTCTCATACTCC 59.099 54.545 0.00 0.00 39.80 3.85
371 372 2.522705 ACCCCCATAGTCTCATACTCCA 59.477 50.000 0.00 0.00 39.80 3.86
372 373 3.144894 ACCCCCATAGTCTCATACTCCAT 59.855 47.826 0.00 0.00 39.80 3.41
373 374 4.171234 CCCCCATAGTCTCATACTCCATT 58.829 47.826 0.00 0.00 39.80 3.16
374 375 4.599241 CCCCCATAGTCTCATACTCCATTT 59.401 45.833 0.00 0.00 39.80 2.32
375 376 5.513788 CCCCCATAGTCTCATACTCCATTTG 60.514 48.000 0.00 0.00 39.80 2.32
376 377 5.072329 CCCCATAGTCTCATACTCCATTTGT 59.928 44.000 0.00 0.00 39.80 2.83
377 378 6.409695 CCCCATAGTCTCATACTCCATTTGTT 60.410 42.308 0.00 0.00 39.80 2.83
378 379 6.708054 CCCATAGTCTCATACTCCATTTGTTC 59.292 42.308 0.00 0.00 39.80 3.18
379 380 7.275183 CCATAGTCTCATACTCCATTTGTTCA 58.725 38.462 0.00 0.00 39.80 3.18
380 381 7.770433 CCATAGTCTCATACTCCATTTGTTCAA 59.230 37.037 0.00 0.00 39.80 2.69
381 382 9.166173 CATAGTCTCATACTCCATTTGTTCAAA 57.834 33.333 0.44 0.44 39.80 2.69
382 383 9.739276 ATAGTCTCATACTCCATTTGTTCAAAA 57.261 29.630 2.11 0.00 39.80 2.44
383 384 8.641498 AGTCTCATACTCCATTTGTTCAAAAT 57.359 30.769 2.11 0.00 30.33 1.82
384 385 9.082313 AGTCTCATACTCCATTTGTTCAAAATT 57.918 29.630 2.11 0.00 30.33 1.82
392 393 9.665719 ACTCCATTTGTTCAAAATTACTTGTTT 57.334 25.926 2.11 0.00 0.00 2.83
395 396 9.500864 CCATTTGTTCAAAATTACTTGTTTTGG 57.499 29.630 10.36 0.00 43.36 3.28
401 402 9.715123 GTTCAAAATTACTTGTTTTGGAAATGG 57.285 29.630 10.36 0.00 43.36 3.16
402 403 9.672673 TTCAAAATTACTTGTTTTGGAAATGGA 57.327 25.926 10.36 0.00 43.36 3.41
403 404 9.844257 TCAAAATTACTTGTTTTGGAAATGGAT 57.156 25.926 10.36 0.00 43.36 3.41
443 444 9.737427 AAATACGTCTAGATACATCAGTTTCTG 57.263 33.333 0.00 0.00 36.81 3.02
444 445 5.583495 ACGTCTAGATACATCAGTTTCTGC 58.417 41.667 0.00 0.00 36.81 4.26
445 446 5.125578 ACGTCTAGATACATCAGTTTCTGCA 59.874 40.000 0.00 0.00 36.81 4.41
446 447 6.036470 CGTCTAGATACATCAGTTTCTGCAA 58.964 40.000 0.00 0.00 36.81 4.08
447 448 6.020281 CGTCTAGATACATCAGTTTCTGCAAC 60.020 42.308 0.00 0.00 36.81 4.17
448 449 6.813649 GTCTAGATACATCAGTTTCTGCAACA 59.186 38.462 0.00 0.00 36.81 3.33
449 450 7.331934 GTCTAGATACATCAGTTTCTGCAACAA 59.668 37.037 0.00 0.00 36.81 2.83
450 451 6.492007 AGATACATCAGTTTCTGCAACAAG 57.508 37.500 0.00 0.00 37.93 3.16
451 452 6.000219 AGATACATCAGTTTCTGCAACAAGT 59.000 36.000 0.00 0.00 37.93 3.16
452 453 7.161404 AGATACATCAGTTTCTGCAACAAGTA 58.839 34.615 0.00 0.00 37.93 2.24
453 454 7.661437 AGATACATCAGTTTCTGCAACAAGTAA 59.339 33.333 0.00 0.00 37.93 2.24
454 455 6.639632 ACATCAGTTTCTGCAACAAGTAAT 57.360 33.333 0.00 0.00 37.93 1.89
455 456 7.042797 ACATCAGTTTCTGCAACAAGTAATT 57.957 32.000 0.00 0.00 37.93 1.40
456 457 7.141363 ACATCAGTTTCTGCAACAAGTAATTC 58.859 34.615 0.00 0.00 37.93 2.17
457 458 6.072112 TCAGTTTCTGCAACAAGTAATTCC 57.928 37.500 0.00 0.00 37.93 3.01
458 459 4.911610 CAGTTTCTGCAACAAGTAATTCCG 59.088 41.667 0.00 0.00 37.93 4.30
459 460 4.819630 AGTTTCTGCAACAAGTAATTCCGA 59.180 37.500 0.00 0.00 37.93 4.55
460 461 5.298276 AGTTTCTGCAACAAGTAATTCCGAA 59.702 36.000 0.00 0.00 37.93 4.30
461 462 5.957842 TTCTGCAACAAGTAATTCCGAAT 57.042 34.783 0.00 0.00 0.00 3.34
462 463 5.295431 TCTGCAACAAGTAATTCCGAATG 57.705 39.130 0.00 0.00 0.00 2.67
463 464 4.155826 TCTGCAACAAGTAATTCCGAATGG 59.844 41.667 0.00 0.00 0.00 3.16
464 465 4.075682 TGCAACAAGTAATTCCGAATGGA 58.924 39.130 0.00 0.00 44.61 3.41
495 496 0.796312 ACGACAAAGCACAATAGCCG 59.204 50.000 0.00 0.00 34.23 5.52
558 559 2.354510 CGATGTCGCATATTTGGGTTGT 59.645 45.455 0.40 0.00 37.12 3.32
606 607 5.425630 GGTATGTTGTCTAGTAAAGTGGGG 58.574 45.833 0.00 0.00 0.00 4.96
651 652 6.890558 TCACGGAAAGTATTTTTACCGAAAG 58.109 36.000 14.99 6.94 39.27 2.62
654 655 8.445493 CACGGAAAGTATTTTTACCGAAAGTAT 58.555 33.333 14.99 0.00 39.27 2.12
819 821 4.397420 TGTAGTACGGGTAGAAACACAGA 58.603 43.478 0.00 0.00 0.00 3.41
829 831 3.414136 AAACACAGACTGCCGGCCA 62.414 57.895 26.77 11.42 0.00 5.36
830 832 4.626081 ACACAGACTGCCGGCCAC 62.626 66.667 26.77 15.20 0.00 5.01
832 834 3.640407 ACAGACTGCCGGCCACAT 61.640 61.111 26.77 6.21 0.00 3.21
834 836 1.078497 CAGACTGCCGGCCACATAA 60.078 57.895 26.77 2.02 0.00 1.90
837 839 1.102978 GACTGCCGGCCACATAAATT 58.897 50.000 26.77 0.00 0.00 1.82
873 877 3.507786 AGCGAAATGATTTTTAACCGCC 58.492 40.909 14.54 1.64 35.90 6.13
878 882 5.388408 AAATGATTTTTAACCGCCCGTTA 57.612 34.783 0.00 0.00 35.79 3.18
896 900 3.481467 CGTTACGCATCGTTTTCTCCTTC 60.481 47.826 0.00 0.00 41.54 3.46
904 908 5.582665 GCATCGTTTTCTCCTTCACTAATCT 59.417 40.000 0.00 0.00 0.00 2.40
957 961 0.907230 GGGCCTGCATAAAACCCCAA 60.907 55.000 0.84 0.00 34.23 4.12
958 962 0.980423 GGCCTGCATAAAACCCCAAA 59.020 50.000 0.00 0.00 0.00 3.28
978 982 3.402233 CGCGCACATCGTCACACA 61.402 61.111 8.75 0.00 41.07 3.72
979 983 2.170985 GCGCACATCGTCACACAC 59.829 61.111 0.30 0.00 41.07 3.82
980 984 2.594048 GCGCACATCGTCACACACA 61.594 57.895 0.30 0.00 41.07 3.72
981 985 1.201578 CGCACATCGTCACACACAC 59.798 57.895 0.00 0.00 0.00 3.82
982 986 1.486644 CGCACATCGTCACACACACA 61.487 55.000 0.00 0.00 0.00 3.72
1341 1350 4.752879 GGCGGCCACAGCTACGAA 62.753 66.667 15.62 0.00 39.73 3.85
1773 1782 3.324671 CGCGTCACCGTGTTCGTT 61.325 61.111 0.00 0.00 39.68 3.85
1863 1872 1.817447 CTTCCCGACGAGTTCTACCTT 59.183 52.381 0.00 0.00 0.00 3.50
1900 1909 2.435059 GCTTGCCGGAGTCTGACC 60.435 66.667 5.05 0.00 0.00 4.02
1926 1935 2.706890 GGCATCTCCGTCACCTTTAAA 58.293 47.619 0.00 0.00 0.00 1.52
1941 1950 3.268330 CTTTAAAGGGTTCTACCTCGGC 58.732 50.000 7.37 0.00 40.87 5.54
1983 1992 2.776370 TACTCTCCGCACGGTTCCCT 62.776 60.000 9.23 0.00 36.47 4.20
2049 2058 1.202817 GACTCCGTGGTCTTCTTCTCC 59.797 57.143 0.00 0.00 33.81 3.71
2082 2091 3.916392 GAGCACCACGTCGGACCTG 62.916 68.421 10.46 1.28 38.63 4.00
2139 2148 1.660575 CAAGTCGGACTTCGTGCGT 60.661 57.895 20.03 0.00 46.76 5.24
2176 2185 2.041762 AGCTGGAGGGAGCCATCA 59.958 61.111 3.41 0.00 40.08 3.07
2316 2325 0.678395 AGCATCTCATAGCCTGGACG 59.322 55.000 0.00 0.00 0.00 4.79
2481 2493 1.622811 CCTGCTCACCCTCATCCTATC 59.377 57.143 0.00 0.00 0.00 2.08
2487 2499 4.682563 CTCACCCTCATCCTATCATAGGT 58.317 47.826 10.75 0.00 46.32 3.08
2506 2530 2.203294 ACGACGGCAGCCCTTTTT 60.203 55.556 5.63 0.00 0.00 1.94
2514 2538 1.530323 GCAGCCCTTTTTACTCGGAA 58.470 50.000 0.00 0.00 0.00 4.30
2669 2693 0.807667 CTGCAGATGACCAGGCGTAC 60.808 60.000 8.42 0.00 0.00 3.67
2723 2751 0.251916 CCACCACCACACCGTATCAT 59.748 55.000 0.00 0.00 0.00 2.45
2755 2790 5.720261 GCTATAGAGCCAAACACACTTAC 57.280 43.478 3.21 0.00 43.49 2.34
2767 2806 4.415881 ACACACTTACACAAGATCCACA 57.584 40.909 0.00 0.00 35.60 4.17
2769 2808 4.816385 ACACACTTACACAAGATCCACAAG 59.184 41.667 0.00 0.00 35.60 3.16
2770 2809 3.815401 ACACTTACACAAGATCCACAAGC 59.185 43.478 0.00 0.00 35.60 4.01
2788 2829 4.513692 ACAAGCTAGAACATGTAACGCAAA 59.486 37.500 0.00 0.00 0.00 3.68
2789 2830 4.663636 AGCTAGAACATGTAACGCAAAC 57.336 40.909 0.00 0.00 0.00 2.93
2791 2832 2.309898 AGAACATGTAACGCAAACGC 57.690 45.000 0.00 0.00 45.53 4.84
2919 2966 8.668510 ATCGTCACATTTCTTTAGAGCATTAT 57.331 30.769 0.00 0.00 0.00 1.28
2920 2967 8.131455 TCGTCACATTTCTTTAGAGCATTATC 57.869 34.615 0.00 0.00 0.00 1.75
2962 3013 4.293648 TGTCGTGGTGCCGTCCAG 62.294 66.667 0.00 0.00 38.23 3.86
3072 4710 2.074230 TTGGTGCTTTGCCGCTCTTG 62.074 55.000 0.00 0.00 0.00 3.02
3102 4744 6.356556 TGAAATGATAGGAATCACGTCCATT 58.643 36.000 0.00 0.00 44.79 3.16
3103 4745 6.483307 TGAAATGATAGGAATCACGTCCATTC 59.517 38.462 7.87 7.87 44.79 2.67
3138 4783 6.042093 ACTCCTAGTTGAGTTCTGTTTCATGA 59.958 38.462 0.00 0.00 42.92 3.07
3149 4794 9.855361 GAGTTCTGTTTCATGATGATAATTACG 57.145 33.333 0.00 0.00 0.00 3.18
3182 4830 7.733773 TCCACACAAGGATATTCTCTTCTTA 57.266 36.000 0.00 0.00 31.23 2.10
3586 5264 2.918131 GCCACTGAACAAGCAACGAATC 60.918 50.000 0.00 0.00 0.00 2.52
3589 5267 0.237235 TGAACAAGCAACGAATCGGC 59.763 50.000 7.80 1.19 0.00 5.54
3599 5277 0.828022 ACGAATCGGCCACTATGGAA 59.172 50.000 7.80 0.00 40.96 3.53
3600 5278 1.208535 ACGAATCGGCCACTATGGAAA 59.791 47.619 7.80 0.00 40.96 3.13
3601 5279 1.867233 CGAATCGGCCACTATGGAAAG 59.133 52.381 2.24 0.00 40.96 2.62
3602 5280 2.741878 CGAATCGGCCACTATGGAAAGT 60.742 50.000 2.24 0.00 40.96 2.66
3614 7704 8.301002 GCCACTATGGAAAGTTACAAATTAACA 58.699 33.333 0.00 0.00 40.96 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.517832 CAGGACTCCGGATGTCACC 59.482 63.158 25.48 16.12 36.26 4.02
10 11 1.153549 GCAGGACTCCGGATGTCAC 60.154 63.158 25.48 18.03 36.26 3.67
11 12 2.359169 GGCAGGACTCCGGATGTCA 61.359 63.158 25.48 0.00 36.26 3.58
12 13 0.755698 TAGGCAGGACTCCGGATGTC 60.756 60.000 19.75 19.75 0.00 3.06
13 14 0.757188 CTAGGCAGGACTCCGGATGT 60.757 60.000 3.57 5.28 0.00 3.06
14 15 2.045280 CTAGGCAGGACTCCGGATG 58.955 63.158 3.57 0.30 0.00 3.51
15 16 1.834822 GCTAGGCAGGACTCCGGAT 60.835 63.158 3.57 0.00 0.00 4.18
16 17 2.442272 GCTAGGCAGGACTCCGGA 60.442 66.667 2.93 2.93 0.00 5.14
17 18 3.541713 GGCTAGGCAGGACTCCGG 61.542 72.222 12.16 0.00 0.00 5.14
18 19 2.443016 AGGCTAGGCAGGACTCCG 60.443 66.667 19.70 0.00 0.00 4.63
19 20 3.100503 GCAGGCTAGGCAGGACTCC 62.101 68.421 19.70 0.00 0.00 3.85
20 21 0.757188 TAGCAGGCTAGGCAGGACTC 60.757 60.000 19.70 0.00 0.00 3.36
21 22 1.045911 GTAGCAGGCTAGGCAGGACT 61.046 60.000 19.70 11.67 0.00 3.85
22 23 1.330655 TGTAGCAGGCTAGGCAGGAC 61.331 60.000 19.70 10.83 0.00 3.85
23 24 1.001631 TGTAGCAGGCTAGGCAGGA 59.998 57.895 19.70 0.00 0.00 3.86
24 25 1.445095 CTGTAGCAGGCTAGGCAGG 59.555 63.158 19.70 11.18 0.00 4.85
25 26 1.227497 GCTGTAGCAGGCTAGGCAG 60.227 63.158 19.70 12.04 41.59 4.85
26 27 2.903357 GCTGTAGCAGGCTAGGCA 59.097 61.111 19.70 6.44 41.59 4.75
34 35 2.125106 GGAACCCGGCTGTAGCAG 60.125 66.667 6.18 1.37 44.36 4.24
47 48 0.108281 GCTAACAGGACTCCGGGAAC 60.108 60.000 0.00 0.00 0.00 3.62
48 49 1.262640 GGCTAACAGGACTCCGGGAA 61.263 60.000 0.00 0.00 0.00 3.97
49 50 1.684734 GGCTAACAGGACTCCGGGA 60.685 63.158 0.00 0.00 0.00 5.14
50 51 2.732619 GGGCTAACAGGACTCCGGG 61.733 68.421 0.00 0.00 0.00 5.73
51 52 1.961180 CTGGGCTAACAGGACTCCGG 61.961 65.000 0.00 0.00 34.84 5.14
52 53 1.258445 ACTGGGCTAACAGGACTCCG 61.258 60.000 8.13 0.00 42.75 4.63
53 54 0.250513 CACTGGGCTAACAGGACTCC 59.749 60.000 8.13 0.00 42.75 3.85
54 55 0.391793 GCACTGGGCTAACAGGACTC 60.392 60.000 0.00 0.00 42.75 3.36
55 56 1.679898 GCACTGGGCTAACAGGACT 59.320 57.895 0.00 0.00 42.75 3.85
56 57 4.303257 GCACTGGGCTAACAGGAC 57.697 61.111 0.00 0.00 42.75 3.85
66 67 4.473520 CCGGGCTGTAGCACTGGG 62.474 72.222 4.43 0.00 43.67 4.45
67 68 2.257409 AATCCGGGCTGTAGCACTGG 62.257 60.000 0.00 7.49 43.67 4.00
68 69 0.811616 GAATCCGGGCTGTAGCACTG 60.812 60.000 0.00 0.00 43.67 3.66
69 70 1.264749 TGAATCCGGGCTGTAGCACT 61.265 55.000 0.00 0.00 43.67 4.40
70 71 1.090052 GTGAATCCGGGCTGTAGCAC 61.090 60.000 0.00 0.38 44.36 4.40
71 72 1.220749 GTGAATCCGGGCTGTAGCA 59.779 57.895 0.00 0.00 44.36 3.49
72 73 1.090052 GTGTGAATCCGGGCTGTAGC 61.090 60.000 0.00 0.00 41.14 3.58
73 74 0.806102 CGTGTGAATCCGGGCTGTAG 60.806 60.000 0.00 0.00 0.00 2.74
74 75 1.216977 CGTGTGAATCCGGGCTGTA 59.783 57.895 0.00 0.00 0.00 2.74
75 76 2.047274 CGTGTGAATCCGGGCTGT 60.047 61.111 0.00 0.00 0.00 4.40
76 77 2.572095 TAGCGTGTGAATCCGGGCTG 62.572 60.000 0.00 0.00 32.29 4.85
77 78 2.355986 TAGCGTGTGAATCCGGGCT 61.356 57.895 0.00 1.57 34.69 5.19
78 79 2.171725 GTAGCGTGTGAATCCGGGC 61.172 63.158 0.00 0.00 0.00 6.13
79 80 0.806102 CAGTAGCGTGTGAATCCGGG 60.806 60.000 0.00 0.00 0.00 5.73
80 81 0.172578 TCAGTAGCGTGTGAATCCGG 59.827 55.000 0.00 0.00 0.00 5.14
81 82 1.269166 GTCAGTAGCGTGTGAATCCG 58.731 55.000 0.00 0.00 0.00 4.18
82 83 1.641577 GGTCAGTAGCGTGTGAATCC 58.358 55.000 0.00 0.00 0.00 3.01
83 84 1.135489 TCGGTCAGTAGCGTGTGAATC 60.135 52.381 0.00 0.00 46.47 2.52
84 85 0.885879 TCGGTCAGTAGCGTGTGAAT 59.114 50.000 0.00 0.00 46.47 2.57
85 86 0.039798 GTCGGTCAGTAGCGTGTGAA 60.040 55.000 0.00 0.00 46.47 3.18
86 87 1.167781 TGTCGGTCAGTAGCGTGTGA 61.168 55.000 0.00 0.00 46.47 3.58
87 88 0.109272 ATGTCGGTCAGTAGCGTGTG 60.109 55.000 0.00 0.00 46.47 3.82
88 89 0.109272 CATGTCGGTCAGTAGCGTGT 60.109 55.000 0.00 0.00 46.47 4.49
89 90 1.413767 GCATGTCGGTCAGTAGCGTG 61.414 60.000 0.00 0.00 46.47 5.34
90 91 1.153823 GCATGTCGGTCAGTAGCGT 60.154 57.895 0.00 0.00 46.47 5.07
92 93 0.867753 CGAGCATGTCGGTCAGTAGC 60.868 60.000 9.07 0.00 45.58 3.58
93 94 3.242268 CGAGCATGTCGGTCAGTAG 57.758 57.895 9.07 0.00 45.58 2.57
102 103 3.558829 ACATGAATCACATCGAGCATGTC 59.441 43.478 0.00 0.00 44.60 3.06
104 105 5.618561 CATACATGAATCACATCGAGCATG 58.381 41.667 0.00 0.00 42.09 4.06
105 106 4.153655 GCATACATGAATCACATCGAGCAT 59.846 41.667 0.00 0.00 37.07 3.79
106 107 3.495753 GCATACATGAATCACATCGAGCA 59.504 43.478 0.00 0.00 37.07 4.26
107 108 3.495753 TGCATACATGAATCACATCGAGC 59.504 43.478 0.00 0.00 37.07 5.03
108 109 5.857822 ATGCATACATGAATCACATCGAG 57.142 39.130 0.00 0.00 37.07 4.04
121 122 5.280676 CCAACCTATAGGGACATGCATACAT 60.281 44.000 22.91 0.00 40.27 2.29
122 123 4.041567 CCAACCTATAGGGACATGCATACA 59.958 45.833 22.91 0.00 40.27 2.29
123 124 4.041691 ACCAACCTATAGGGACATGCATAC 59.958 45.833 22.91 0.00 40.27 2.39
124 125 4.041567 CACCAACCTATAGGGACATGCATA 59.958 45.833 22.91 0.00 40.27 3.14
125 126 3.056080 ACCAACCTATAGGGACATGCAT 58.944 45.455 22.91 0.00 40.27 3.96
126 127 2.172505 CACCAACCTATAGGGACATGCA 59.827 50.000 22.91 0.00 40.27 3.96
127 128 2.851195 CACCAACCTATAGGGACATGC 58.149 52.381 22.91 0.00 40.27 4.06
128 129 2.487265 GGCACCAACCTATAGGGACATG 60.487 54.545 22.91 15.42 40.27 3.21
129 130 1.774856 GGCACCAACCTATAGGGACAT 59.225 52.381 22.91 3.01 40.27 3.06
130 131 1.209621 GGCACCAACCTATAGGGACA 58.790 55.000 22.91 0.00 40.27 4.02
131 132 0.106149 CGGCACCAACCTATAGGGAC 59.894 60.000 22.91 5.76 40.27 4.46
132 133 1.692173 GCGGCACCAACCTATAGGGA 61.692 60.000 22.91 0.00 40.27 4.20
133 134 1.227853 GCGGCACCAACCTATAGGG 60.228 63.158 22.91 7.80 40.27 3.53
134 135 0.180406 AAGCGGCACCAACCTATAGG 59.820 55.000 17.73 17.73 42.17 2.57
135 136 1.670811 CAAAGCGGCACCAACCTATAG 59.329 52.381 1.45 0.00 0.00 1.31
136 137 1.680555 CCAAAGCGGCACCAACCTATA 60.681 52.381 1.45 0.00 0.00 1.31
137 138 0.965363 CCAAAGCGGCACCAACCTAT 60.965 55.000 1.45 0.00 0.00 2.57
138 139 1.602323 CCAAAGCGGCACCAACCTA 60.602 57.895 1.45 0.00 0.00 3.08
139 140 2.912025 CCAAAGCGGCACCAACCT 60.912 61.111 1.45 0.00 0.00 3.50
140 141 3.989787 CCCAAAGCGGCACCAACC 61.990 66.667 1.45 0.00 0.00 3.77
141 142 2.693250 GAACCCAAAGCGGCACCAAC 62.693 60.000 1.45 0.00 0.00 3.77
142 143 2.443016 AACCCAAAGCGGCACCAA 60.443 55.556 1.45 0.00 0.00 3.67
143 144 2.909965 GAACCCAAAGCGGCACCA 60.910 61.111 1.45 0.00 0.00 4.17
144 145 2.909965 TGAACCCAAAGCGGCACC 60.910 61.111 1.45 0.00 0.00 5.01
145 146 2.335011 GTGAACCCAAAGCGGCAC 59.665 61.111 1.45 0.00 0.00 5.01
146 147 3.283684 CGTGAACCCAAAGCGGCA 61.284 61.111 1.45 0.00 0.00 5.69
147 148 2.975799 TCGTGAACCCAAAGCGGC 60.976 61.111 0.00 0.00 0.00 6.53
148 149 0.320073 TAGTCGTGAACCCAAAGCGG 60.320 55.000 0.00 0.00 0.00 5.52
149 150 1.068474 CTAGTCGTGAACCCAAAGCG 58.932 55.000 0.00 0.00 0.00 4.68
150 151 0.796927 GCTAGTCGTGAACCCAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
151 152 1.270625 TGGCTAGTCGTGAACCCAAAG 60.271 52.381 0.00 0.00 0.00 2.77
152 153 0.759959 TGGCTAGTCGTGAACCCAAA 59.240 50.000 0.00 0.00 0.00 3.28
153 154 0.981183 ATGGCTAGTCGTGAACCCAA 59.019 50.000 0.00 0.00 0.00 4.12
154 155 0.249120 CATGGCTAGTCGTGAACCCA 59.751 55.000 11.26 0.00 0.00 4.51
155 156 0.249398 ACATGGCTAGTCGTGAACCC 59.751 55.000 23.11 0.00 0.00 4.11
156 157 1.641577 GACATGGCTAGTCGTGAACC 58.358 55.000 23.11 7.88 0.00 3.62
169 170 1.184970 AAAAACCTGGGCCGACATGG 61.185 55.000 0.00 0.00 42.50 3.66
170 171 2.350738 AAAAACCTGGGCCGACATG 58.649 52.632 0.00 0.00 0.00 3.21
171 172 4.943373 AAAAACCTGGGCCGACAT 57.057 50.000 0.00 0.00 0.00 3.06
185 186 5.007626 GTCGCTAGCATCCATATGACAAAAA 59.992 40.000 16.45 0.00 34.84 1.94
186 187 4.511454 GTCGCTAGCATCCATATGACAAAA 59.489 41.667 16.45 0.00 34.84 2.44
187 188 4.058124 GTCGCTAGCATCCATATGACAAA 58.942 43.478 16.45 0.00 34.84 2.83
188 189 3.069443 TGTCGCTAGCATCCATATGACAA 59.931 43.478 16.45 0.36 34.84 3.18
189 190 2.627699 TGTCGCTAGCATCCATATGACA 59.372 45.455 16.45 13.85 34.84 3.58
190 191 2.989840 GTGTCGCTAGCATCCATATGAC 59.010 50.000 16.45 11.40 34.84 3.06
191 192 2.893489 AGTGTCGCTAGCATCCATATGA 59.107 45.455 16.45 0.00 34.84 2.15
192 193 3.309961 AGTGTCGCTAGCATCCATATG 57.690 47.619 16.45 0.00 36.09 1.78
193 194 4.706962 TGATAGTGTCGCTAGCATCCATAT 59.293 41.667 16.45 6.97 40.72 1.78
194 195 4.079253 TGATAGTGTCGCTAGCATCCATA 58.921 43.478 16.45 1.98 40.72 2.74
195 196 2.893489 TGATAGTGTCGCTAGCATCCAT 59.107 45.455 16.45 0.00 40.72 3.41
196 197 2.306847 TGATAGTGTCGCTAGCATCCA 58.693 47.619 16.45 4.65 40.72 3.41
201 202 6.786207 TCATGTATATGATAGTGTCGCTAGC 58.214 40.000 4.06 4.06 38.37 3.42
202 203 6.909895 GCTCATGTATATGATAGTGTCGCTAG 59.090 42.308 2.30 0.00 42.19 3.42
203 204 6.183360 GGCTCATGTATATGATAGTGTCGCTA 60.183 42.308 2.30 0.00 42.19 4.26
204 205 5.393569 GGCTCATGTATATGATAGTGTCGCT 60.394 44.000 2.30 0.00 42.19 4.93
205 206 4.800993 GGCTCATGTATATGATAGTGTCGC 59.199 45.833 2.30 1.39 42.19 5.19
206 207 5.954335 TGGCTCATGTATATGATAGTGTCG 58.046 41.667 2.30 0.00 42.19 4.35
207 208 8.607441 TTTTGGCTCATGTATATGATAGTGTC 57.393 34.615 2.30 0.00 42.19 3.67
208 209 7.663081 CCTTTTGGCTCATGTATATGATAGTGT 59.337 37.037 2.30 0.00 42.19 3.55
209 210 8.037382 CCTTTTGGCTCATGTATATGATAGTG 57.963 38.462 2.30 0.00 42.19 2.74
227 228 1.660264 GACCGTTTGCGCCTTTTGG 60.660 57.895 4.18 2.72 44.18 3.28
228 229 1.660264 GGACCGTTTGCGCCTTTTG 60.660 57.895 4.18 0.00 36.67 2.44
229 230 2.725641 GGACCGTTTGCGCCTTTT 59.274 55.556 4.18 0.00 36.67 2.27
230 231 3.292159 GGGACCGTTTGCGCCTTT 61.292 61.111 4.18 0.00 36.67 3.11
242 243 3.793888 CTTACCTGGCCCGGGACC 61.794 72.222 27.91 24.83 33.36 4.46
243 244 3.793888 CCTTACCTGGCCCGGGAC 61.794 72.222 29.31 26.59 33.36 4.46
244 245 4.342086 ACCTTACCTGGCCCGGGA 62.342 66.667 29.31 5.96 33.36 5.14
245 246 4.109675 CACCTTACCTGGCCCGGG 62.110 72.222 19.09 19.09 35.68 5.73
246 247 3.006728 TCACCTTACCTGGCCCGG 61.007 66.667 12.40 12.40 0.00 5.73
247 248 2.267961 GTCACCTTACCTGGCCCG 59.732 66.667 0.00 0.00 0.00 6.13
248 249 1.002502 GTGTCACCTTACCTGGCCC 60.003 63.158 0.00 0.00 0.00 5.80
249 250 1.002502 GGTGTCACCTTACCTGGCC 60.003 63.158 15.22 0.00 34.73 5.36
250 251 1.002502 GGGTGTCACCTTACCTGGC 60.003 63.158 21.40 0.00 38.64 4.85
251 252 1.295423 CGGGTGTCACCTTACCTGG 59.705 63.158 21.40 0.00 39.23 4.45
252 253 0.320421 CACGGGTGTCACCTTACCTG 60.320 60.000 21.40 2.87 46.53 4.00
253 254 1.477685 CCACGGGTGTCACCTTACCT 61.478 60.000 21.40 0.00 38.64 3.08
254 255 1.004200 CCACGGGTGTCACCTTACC 60.004 63.158 21.40 4.01 38.64 2.85
255 256 1.004200 CCCACGGGTGTCACCTTAC 60.004 63.158 21.40 4.38 38.64 2.34
256 257 3.474000 CCCACGGGTGTCACCTTA 58.526 61.111 21.40 0.00 38.64 2.69
266 267 4.016706 GGTGTCAGGACCCACGGG 62.017 72.222 0.00 0.00 42.03 5.28
267 268 2.813726 TTGGTGTCAGGACCCACGG 61.814 63.158 8.54 0.00 34.79 4.94
268 269 1.597027 GTTGGTGTCAGGACCCACG 60.597 63.158 8.54 0.00 34.79 4.94
269 270 1.053424 TAGTTGGTGTCAGGACCCAC 58.947 55.000 8.54 0.00 34.79 4.61
270 271 1.418637 GTTAGTTGGTGTCAGGACCCA 59.581 52.381 5.79 5.79 34.79 4.51
271 272 1.607251 CGTTAGTTGGTGTCAGGACCC 60.607 57.143 0.00 0.00 34.79 4.46
272 273 1.342174 TCGTTAGTTGGTGTCAGGACC 59.658 52.381 0.00 0.00 36.43 4.46
273 274 2.035576 AGTCGTTAGTTGGTGTCAGGAC 59.964 50.000 0.00 0.00 0.00 3.85
274 275 2.295349 GAGTCGTTAGTTGGTGTCAGGA 59.705 50.000 0.00 0.00 0.00 3.86
275 276 2.296471 AGAGTCGTTAGTTGGTGTCAGG 59.704 50.000 0.00 0.00 0.00 3.86
276 277 3.644884 AGAGTCGTTAGTTGGTGTCAG 57.355 47.619 0.00 0.00 0.00 3.51
277 278 4.395959 AAAGAGTCGTTAGTTGGTGTCA 57.604 40.909 0.00 0.00 0.00 3.58
278 279 4.085210 CGAAAAGAGTCGTTAGTTGGTGTC 60.085 45.833 0.00 0.00 36.26 3.67
279 280 3.800506 CGAAAAGAGTCGTTAGTTGGTGT 59.199 43.478 0.00 0.00 36.26 4.16
280 281 4.370620 CGAAAAGAGTCGTTAGTTGGTG 57.629 45.455 0.00 0.00 36.26 4.17
290 291 3.797256 AGTGTGAAGAACGAAAAGAGTCG 59.203 43.478 0.00 0.00 46.54 4.18
327 328 6.577427 GGTGCACTTTCTTAAGAATTGTTACG 59.423 38.462 18.37 9.87 35.30 3.18
346 347 0.839946 ATGAGACTATGGGGGTGCAC 59.160 55.000 8.80 8.80 0.00 4.57
356 357 9.739276 TTTTGAACAAATGGAGTATGAGACTAT 57.261 29.630 0.82 0.00 39.06 2.12
357 358 9.739276 ATTTTGAACAAATGGAGTATGAGACTA 57.261 29.630 0.82 0.00 39.06 2.59
358 359 8.641498 ATTTTGAACAAATGGAGTATGAGACT 57.359 30.769 0.82 0.00 42.90 3.24
366 367 9.665719 AAACAAGTAATTTTGAACAAATGGAGT 57.334 25.926 0.82 0.00 0.00 3.85
369 370 9.500864 CCAAAACAAGTAATTTTGAACAAATGG 57.499 29.630 10.89 0.00 45.75 3.16
375 376 9.715123 CCATTTCCAAAACAAGTAATTTTGAAC 57.285 29.630 10.89 0.00 45.75 3.18
376 377 9.672673 TCCATTTCCAAAACAAGTAATTTTGAA 57.327 25.926 10.89 0.74 45.75 2.69
377 378 9.844257 ATCCATTTCCAAAACAAGTAATTTTGA 57.156 25.926 10.89 0.00 45.75 2.69
417 418 9.737427 CAGAAACTGATGTATCTAGACGTATTT 57.263 33.333 0.00 0.00 32.44 1.40
418 419 7.863375 GCAGAAACTGATGTATCTAGACGTATT 59.137 37.037 0.00 0.00 32.44 1.89
419 420 7.013369 TGCAGAAACTGATGTATCTAGACGTAT 59.987 37.037 0.00 0.00 32.44 3.06
420 421 6.317893 TGCAGAAACTGATGTATCTAGACGTA 59.682 38.462 0.00 0.00 32.44 3.57
421 422 5.125578 TGCAGAAACTGATGTATCTAGACGT 59.874 40.000 0.00 0.00 32.44 4.34
422 423 5.582550 TGCAGAAACTGATGTATCTAGACG 58.417 41.667 0.00 0.00 32.44 4.18
423 424 6.813649 TGTTGCAGAAACTGATGTATCTAGAC 59.186 38.462 0.00 0.00 39.70 2.59
424 425 6.935167 TGTTGCAGAAACTGATGTATCTAGA 58.065 36.000 0.00 0.00 39.70 2.43
425 426 7.332926 ACTTGTTGCAGAAACTGATGTATCTAG 59.667 37.037 2.81 0.00 39.70 2.43
426 427 7.161404 ACTTGTTGCAGAAACTGATGTATCTA 58.839 34.615 2.81 0.00 39.70 1.98
427 428 6.000219 ACTTGTTGCAGAAACTGATGTATCT 59.000 36.000 2.81 0.00 39.70 1.98
428 429 6.246420 ACTTGTTGCAGAAACTGATGTATC 57.754 37.500 2.81 0.00 39.70 2.24
429 430 7.744087 TTACTTGTTGCAGAAACTGATGTAT 57.256 32.000 2.81 0.00 39.70 2.29
430 431 7.744087 ATTACTTGTTGCAGAAACTGATGTA 57.256 32.000 2.81 0.00 39.70 2.29
431 432 6.639632 ATTACTTGTTGCAGAAACTGATGT 57.360 33.333 2.81 0.00 39.70 3.06
432 433 6.583806 GGAATTACTTGTTGCAGAAACTGATG 59.416 38.462 2.81 0.00 39.70 3.07
433 434 6.568462 CGGAATTACTTGTTGCAGAAACTGAT 60.568 38.462 2.81 0.00 39.70 2.90
434 435 5.277779 CGGAATTACTTGTTGCAGAAACTGA 60.278 40.000 2.81 0.00 39.70 3.41
435 436 4.911610 CGGAATTACTTGTTGCAGAAACTG 59.088 41.667 0.00 0.00 39.70 3.16
436 437 4.819630 TCGGAATTACTTGTTGCAGAAACT 59.180 37.500 0.00 0.00 39.70 2.66
437 438 5.103290 TCGGAATTACTTGTTGCAGAAAC 57.897 39.130 0.00 0.00 39.41 2.78
438 439 5.759506 TTCGGAATTACTTGTTGCAGAAA 57.240 34.783 0.00 0.00 0.00 2.52
439 440 5.335583 CCATTCGGAATTACTTGTTGCAGAA 60.336 40.000 0.00 0.00 0.00 3.02
440 441 4.155826 CCATTCGGAATTACTTGTTGCAGA 59.844 41.667 0.00 0.00 0.00 4.26
441 442 4.155826 TCCATTCGGAATTACTTGTTGCAG 59.844 41.667 0.00 0.00 38.83 4.41
442 443 4.075682 TCCATTCGGAATTACTTGTTGCA 58.924 39.130 0.00 0.00 38.83 4.08
443 444 4.438744 CCTCCATTCGGAATTACTTGTTGC 60.439 45.833 0.00 0.00 42.21 4.17
444 445 4.096382 CCCTCCATTCGGAATTACTTGTTG 59.904 45.833 0.00 0.00 42.21 3.33
445 446 4.018779 TCCCTCCATTCGGAATTACTTGTT 60.019 41.667 0.00 0.00 42.21 2.83
446 447 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
447 448 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
448 449 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
449 450 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
450 451 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
451 452 4.553678 ACTACTCCCTCCATTCGGAATTA 58.446 43.478 0.00 0.00 42.21 1.40
452 453 3.385115 ACTACTCCCTCCATTCGGAATT 58.615 45.455 0.00 0.00 42.21 2.17
453 454 3.047695 ACTACTCCCTCCATTCGGAAT 57.952 47.619 0.00 0.00 42.21 3.01
454 455 2.544844 ACTACTCCCTCCATTCGGAA 57.455 50.000 0.00 0.00 42.21 4.30
455 456 2.544844 AACTACTCCCTCCATTCGGA 57.455 50.000 0.00 0.00 39.79 4.55
456 457 3.490419 CGTTAACTACTCCCTCCATTCGG 60.490 52.174 3.71 0.00 0.00 4.30
457 458 3.379372 TCGTTAACTACTCCCTCCATTCG 59.621 47.826 3.71 0.00 0.00 3.34
458 459 4.159135 TGTCGTTAACTACTCCCTCCATTC 59.841 45.833 11.14 0.00 0.00 2.67
459 460 4.091549 TGTCGTTAACTACTCCCTCCATT 58.908 43.478 11.14 0.00 0.00 3.16
460 461 3.705051 TGTCGTTAACTACTCCCTCCAT 58.295 45.455 11.14 0.00 0.00 3.41
461 462 3.159213 TGTCGTTAACTACTCCCTCCA 57.841 47.619 11.14 0.00 0.00 3.86
462 463 4.492611 CTTTGTCGTTAACTACTCCCTCC 58.507 47.826 11.14 0.00 0.00 4.30
463 464 3.925299 GCTTTGTCGTTAACTACTCCCTC 59.075 47.826 11.14 0.00 0.00 4.30
464 465 3.322828 TGCTTTGTCGTTAACTACTCCCT 59.677 43.478 11.14 0.00 0.00 4.20
465 466 3.431233 GTGCTTTGTCGTTAACTACTCCC 59.569 47.826 11.14 0.00 0.00 4.30
466 467 4.053295 TGTGCTTTGTCGTTAACTACTCC 58.947 43.478 11.14 0.00 0.00 3.85
467 468 5.646467 TTGTGCTTTGTCGTTAACTACTC 57.354 39.130 11.14 0.41 0.00 2.59
468 469 6.128634 GCTATTGTGCTTTGTCGTTAACTACT 60.129 38.462 11.14 0.00 0.00 2.57
469 470 6.013689 GCTATTGTGCTTTGTCGTTAACTAC 58.986 40.000 3.71 3.54 0.00 2.73
526 527 3.481009 CGACATCGCTATCAGGGTC 57.519 57.895 0.00 0.00 0.00 4.46
545 546 5.245075 ACCACCAAACTACAACCCAAATATG 59.755 40.000 0.00 0.00 0.00 1.78
552 553 3.824133 ACTAACCACCAAACTACAACCC 58.176 45.455 0.00 0.00 0.00 4.11
558 559 5.220892 CGCTTTGAAACTAACCACCAAACTA 60.221 40.000 0.00 0.00 0.00 2.24
621 622 7.276218 CGGTAAAAATACTTTCCGTGATAGACA 59.724 37.037 0.00 0.00 34.38 3.41
654 655 6.984474 CGCCTTCTATATTTTCCTAACAGTGA 59.016 38.462 0.00 0.00 0.00 3.41
701 702 4.312443 TCTGCGTTTTAGGTACCAAGAAG 58.688 43.478 15.94 0.00 0.00 2.85
769 770 4.637276 ACAAACACGGACACAGAATATGA 58.363 39.130 0.00 0.00 0.00 2.15
819 821 2.428544 TAATTTATGTGGCCGGCAGT 57.571 45.000 30.85 13.02 0.00 4.40
834 836 9.669353 CATTTCGCTTTGATTAGCACTATAATT 57.331 29.630 0.00 0.00 41.28 1.40
837 839 8.607441 ATCATTTCGCTTTGATTAGCACTATA 57.393 30.769 0.00 0.00 41.28 1.31
853 857 2.601314 GGGCGGTTAAAAATCATTTCGC 59.399 45.455 4.91 4.91 37.33 4.70
873 877 1.060122 GGAGAAAACGATGCGTAACGG 59.940 52.381 8.17 0.00 39.99 4.44
878 882 1.798813 GTGAAGGAGAAAACGATGCGT 59.201 47.619 0.00 0.00 43.97 5.24
896 900 1.592669 CAGGCCGGCGAGATTAGTG 60.593 63.158 22.54 3.38 0.00 2.74
904 908 3.613877 TTTACATGCAGGCCGGCGA 62.614 57.895 23.18 12.53 36.28 5.54
957 961 2.660224 TGACGATGTGCGCGTGTT 60.660 55.556 8.43 0.00 46.04 3.32
958 962 3.403057 GTGACGATGTGCGCGTGT 61.403 61.111 8.43 0.00 46.04 4.49
978 982 1.597854 CGCATGGACTGTGGTGTGT 60.598 57.895 0.00 0.00 0.00 3.72
979 983 1.568612 GACGCATGGACTGTGGTGTG 61.569 60.000 0.00 0.00 39.79 3.82
980 984 1.301716 GACGCATGGACTGTGGTGT 60.302 57.895 0.00 0.00 39.79 4.16
981 985 0.884259 TTGACGCATGGACTGTGGTG 60.884 55.000 0.00 0.00 39.79 4.17
982 986 0.036732 ATTGACGCATGGACTGTGGT 59.963 50.000 0.00 0.00 39.79 4.16
1329 1338 1.153549 GAGGCCTTCGTAGCTGTGG 60.154 63.158 6.77 0.00 0.00 4.17
1484 1493 2.029964 GGGTCTTGTTGGACGCGA 59.970 61.111 15.93 0.00 38.87 5.87
1493 1502 1.122019 AGAGAACGCCAGGGTCTTGT 61.122 55.000 0.00 0.00 0.00 3.16
1732 1741 1.606531 GGACAGGGCTGAGCTTGAT 59.393 57.895 14.49 1.81 0.00 2.57
1806 1815 2.476051 CATGTTGACACGAGCCGC 59.524 61.111 0.00 0.00 0.00 6.53
1845 1854 1.815003 GAAAGGTAGAACTCGTCGGGA 59.185 52.381 0.00 0.00 0.00 5.14
1923 1932 1.197812 GGCCGAGGTAGAACCCTTTA 58.802 55.000 0.00 0.00 39.75 1.85
1926 1935 2.758737 CGGCCGAGGTAGAACCCT 60.759 66.667 24.07 0.00 39.75 4.34
1983 1992 2.044352 TCCGACAGCCCGATCTCA 60.044 61.111 0.00 0.00 0.00 3.27
2059 2068 2.030562 CGACGTGGTGCTCCCTTT 59.969 61.111 1.59 0.00 0.00 3.11
2176 2185 1.332195 GGCTGCTTGGAAAGGAAACT 58.668 50.000 0.00 0.00 46.16 2.66
2202 2211 1.035932 ACGGGTCCAGGATGACGTAG 61.036 60.000 12.66 0.00 39.69 3.51
2330 2339 1.573108 CATGTACTCCTCCCTGTGGT 58.427 55.000 0.00 0.00 0.00 4.16
2481 2493 1.878522 GCTGCCGTCGTCACCTATG 60.879 63.158 0.00 0.00 0.00 2.23
2487 2499 2.951475 AAAAAGGGCTGCCGTCGTCA 62.951 55.000 15.04 0.00 0.00 4.35
2514 2538 3.126225 GTCCTCGACGCCTCGACT 61.126 66.667 3.56 0.00 44.14 4.18
2669 2693 3.058450 GCTAGCTAGATGTCATGTGCAG 58.942 50.000 25.15 0.00 0.00 4.41
2753 2788 5.011635 TGTTCTAGCTTGTGGATCTTGTGTA 59.988 40.000 0.00 0.00 0.00 2.90
2755 2790 4.318332 TGTTCTAGCTTGTGGATCTTGTG 58.682 43.478 0.00 0.00 0.00 3.33
2767 2806 4.377022 CGTTTGCGTTACATGTTCTAGCTT 60.377 41.667 2.30 0.00 0.00 3.74
2769 2808 3.404564 CGTTTGCGTTACATGTTCTAGC 58.595 45.455 2.30 6.00 0.00 3.42
2770 2809 3.404564 GCGTTTGCGTTACATGTTCTAG 58.595 45.455 2.30 0.00 40.81 2.43
2788 2829 2.404995 CCGAGGTTCCTCTACGCGT 61.405 63.158 19.17 19.17 0.00 6.01
2789 2830 2.408022 CCGAGGTTCCTCTACGCG 59.592 66.667 15.60 3.53 0.00 6.01
2790 2831 1.108132 ATCCCGAGGTTCCTCTACGC 61.108 60.000 15.60 0.00 0.00 4.42
2791 2832 0.669077 CATCCCGAGGTTCCTCTACG 59.331 60.000 15.60 4.69 0.00 3.51
2792 2833 1.682323 GTCATCCCGAGGTTCCTCTAC 59.318 57.143 15.60 2.72 0.00 2.59
2793 2834 1.411216 GGTCATCCCGAGGTTCCTCTA 60.411 57.143 15.60 3.28 0.00 2.43
2794 2835 0.688087 GGTCATCCCGAGGTTCCTCT 60.688 60.000 15.60 0.00 0.00 3.69
2798 2841 1.123928 ATCTGGTCATCCCGAGGTTC 58.876 55.000 0.00 0.00 35.15 3.62
2800 2843 1.123928 GAATCTGGTCATCCCGAGGT 58.876 55.000 0.00 0.00 35.15 3.85
2919 2966 7.231705 CAACATTGCAAAAATACAACACAGA 57.768 32.000 1.71 0.00 0.00 3.41
2960 3011 5.931441 AAAGAGAACAAATCGTCCTTCTG 57.069 39.130 0.00 0.00 0.00 3.02
2962 3013 6.495706 ACAAAAAGAGAACAAATCGTCCTTC 58.504 36.000 0.00 0.00 0.00 3.46
3072 4710 5.563475 CGTGATTCCTATCATTTCAATGGGC 60.563 44.000 0.00 0.00 42.49 5.36
3102 4744 6.017192 ACTCAACTAGGAGTAGTTCCAATGA 58.983 40.000 0.25 0.00 44.81 2.57
3103 4745 6.287589 ACTCAACTAGGAGTAGTTCCAATG 57.712 41.667 0.25 0.00 44.81 2.82
3117 4762 7.895975 TCATCATGAAACAGAACTCAACTAG 57.104 36.000 0.00 0.00 0.00 2.57
3118 4763 9.942850 TTATCATCATGAAACAGAACTCAACTA 57.057 29.630 0.00 0.00 0.00 2.24
3119 4764 8.853077 TTATCATCATGAAACAGAACTCAACT 57.147 30.769 0.00 0.00 0.00 3.16
3536 5184 4.677584 AGATAAGCTGAGCTAGAAACGTG 58.322 43.478 7.68 0.00 38.25 4.49
3586 5264 2.980568 TGTAACTTTCCATAGTGGCCG 58.019 47.619 0.00 0.00 37.47 6.13
3599 5277 7.593644 GCCATTCGTCTTGTTAATTTGTAACTT 59.406 33.333 0.00 0.00 0.00 2.66
3600 5278 7.081976 GCCATTCGTCTTGTTAATTTGTAACT 58.918 34.615 0.00 0.00 0.00 2.24
3601 5279 6.307077 GGCCATTCGTCTTGTTAATTTGTAAC 59.693 38.462 0.00 0.00 0.00 2.50
3602 5280 6.207810 AGGCCATTCGTCTTGTTAATTTGTAA 59.792 34.615 5.01 0.00 0.00 2.41
3614 7704 1.880027 GTGACAAAGGCCATTCGTCTT 59.120 47.619 5.01 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.