Multiple sequence alignment - TraesCS1A01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G418700 chr1A 100.000 5307 0 0 1 5307 575871820 575866514 0.000000e+00 9801.0
1 TraesCS1A01G418700 chr1D 97.505 3727 82 2 656 4374 479595492 479591769 0.000000e+00 6357.0
2 TraesCS1A01G418700 chr1D 95.047 848 38 4 4428 5272 479591577 479590731 0.000000e+00 1330.0
3 TraesCS1A01G418700 chr1D 93.713 334 17 4 331 663 267863386 267863056 1.030000e-136 497.0
4 TraesCS1A01G418700 chr1D 97.368 38 1 0 5270 5307 479562214 479562177 1.230000e-06 65.8
5 TraesCS1A01G418700 chr1B 97.500 3720 90 2 657 4374 667823471 667819753 0.000000e+00 6351.0
6 TraesCS1A01G418700 chr1B 92.000 850 62 6 4428 5272 667819635 667818787 0.000000e+00 1188.0
7 TraesCS1A01G418700 chr1B 96.341 82 2 1 1 81 667823584 667823503 3.330000e-27 134.0
8 TraesCS1A01G418700 chr1B 92.308 39 1 2 4846 4882 162810451 162810413 3.000000e-03 54.7
9 TraesCS1A01G418700 chr5B 74.016 1474 346 28 2398 3851 695812913 695811457 2.770000e-157 566.0
10 TraesCS1A01G418700 chr5B 93.958 331 17 3 331 660 310319897 310319569 1.030000e-136 497.0
11 TraesCS1A01G418700 chr5B 100.000 30 0 0 4848 4877 653781224 653781195 7.420000e-04 56.5
12 TraesCS1A01G418700 chr5B 94.444 36 1 1 4842 4877 506198462 506198496 3.000000e-03 54.7
13 TraesCS1A01G418700 chr5D 74.134 1415 331 27 2457 3852 555557062 555558460 2.160000e-153 553.0
14 TraesCS1A01G418700 chr5D 93.333 330 19 3 330 658 485707633 485707960 7.990000e-133 484.0
15 TraesCS1A01G418700 chr5D 91.830 306 23 2 4876 5179 503230618 503230923 4.910000e-115 425.0
16 TraesCS1A01G418700 chr5D 91.830 306 23 2 4876 5179 503236151 503236456 4.910000e-115 425.0
17 TraesCS1A01G418700 chr5D 91.830 306 23 2 4876 5179 503240400 503240705 4.910000e-115 425.0
18 TraesCS1A01G418700 chr6D 92.941 340 20 4 321 659 129021066 129021402 4.780000e-135 492.0
19 TraesCS1A01G418700 chr6D 91.830 306 23 2 4876 5179 389247540 389247845 4.910000e-115 425.0
20 TraesCS1A01G418700 chr6D 91.503 306 24 2 4876 5179 389252293 389252598 2.290000e-113 420.0
21 TraesCS1A01G418700 chr3D 93.656 331 18 3 329 658 7428777 7429105 4.780000e-135 492.0
22 TraesCS1A01G418700 chr3D 92.941 340 20 4 321 659 151107307 151107643 4.780000e-135 492.0
23 TraesCS1A01G418700 chr3D 92.941 340 20 4 321 659 307003233 307003569 4.780000e-135 492.0
24 TraesCS1A01G418700 chr5A 92.941 340 19 5 321 659 288953926 288953591 1.720000e-134 490.0
25 TraesCS1A01G418700 chr5A 92.952 227 12 4 75 300 483329622 483329845 1.430000e-85 327.0
26 TraesCS1A01G418700 chr4B 93.373 332 19 3 328 658 495310800 495310471 6.180000e-134 488.0
27 TraesCS1A01G418700 chr4B 91.594 345 24 5 316 658 95566855 95567196 6.220000e-129 472.0
28 TraesCS1A01G418700 chr2A 93.114 334 19 4 331 663 301240235 301240565 2.220000e-133 486.0
29 TraesCS1A01G418700 chr2A 92.814 334 20 4 331 663 300995304 300995634 1.030000e-131 481.0
30 TraesCS1A01G418700 chr2A 90.935 353 26 6 330 679 109702238 109701889 2.240000e-128 470.0
31 TraesCS1A01G418700 chr2A 93.151 219 12 3 82 299 5606632 5606416 8.580000e-83 318.0
32 TraesCS1A01G418700 chr2A 92.793 222 13 3 78 298 417360449 417360230 8.580000e-83 318.0
33 TraesCS1A01G418700 chr2D 92.647 340 20 5 321 659 382086224 382086559 7.990000e-133 484.0
34 TraesCS1A01G418700 chr2D 92.836 335 20 4 331 663 90603712 90604044 2.870000e-132 483.0
35 TraesCS1A01G418700 chr2D 100.000 31 0 0 4848 4878 568209812 568209782 2.060000e-04 58.4
36 TraesCS1A01G418700 chr7B 91.884 345 23 5 316 658 178720640 178720981 1.340000e-130 477.0
37 TraesCS1A01G418700 chr2B 91.618 346 22 7 316 658 476931893 476932234 6.220000e-129 472.0
38 TraesCS1A01G418700 chr2B 100.000 31 0 0 4848 4878 772825469 772825499 2.060000e-04 58.4
39 TraesCS1A01G418700 chr4A 91.830 306 23 2 4876 5179 17096659 17096964 4.910000e-115 425.0
40 TraesCS1A01G418700 chr6A 91.503 306 24 2 4876 5179 531825993 531826298 2.290000e-113 420.0
41 TraesCS1A01G418700 chr6A 92.793 222 13 3 79 299 606612049 606611830 8.580000e-83 318.0
42 TraesCS1A01G418700 chr6A 73.273 333 81 5 3930 4258 584947691 584947363 1.210000e-21 115.0
43 TraesCS1A01G418700 chr7A 93.213 221 12 3 79 298 401405379 401405161 6.630000e-84 322.0
44 TraesCS1A01G418700 chr7A 90.612 245 16 7 70 309 641431643 641431401 8.580000e-83 318.0
45 TraesCS1A01G418700 chr7A 92.411 224 14 3 76 298 27384214 27383993 3.080000e-82 316.0
46 TraesCS1A01G418700 chr3A 92.377 223 14 3 78 299 412693766 412693546 1.110000e-81 315.0
47 TraesCS1A01G418700 chrUn 91.379 232 15 5 79 308 289259798 289260026 3.990000e-81 313.0
48 TraesCS1A01G418700 chr6B 86.170 94 10 3 5180 5272 566348795 566348704 1.220000e-16 99.0
49 TraesCS1A01G418700 chr3B 96.970 33 1 0 4845 4877 704654992 704655024 7.420000e-04 56.5
50 TraesCS1A01G418700 chr7D 100.000 28 0 0 4850 4877 436480995 436480968 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G418700 chr1A 575866514 575871820 5306 True 9801.000000 9801 100.000000 1 5307 1 chr1A.!!$R1 5306
1 TraesCS1A01G418700 chr1D 479590731 479595492 4761 True 3843.500000 6357 96.276000 656 5272 2 chr1D.!!$R3 4616
2 TraesCS1A01G418700 chr1B 667818787 667823584 4797 True 2557.666667 6351 95.280333 1 5272 3 chr1B.!!$R2 5271
3 TraesCS1A01G418700 chr5B 695811457 695812913 1456 True 566.000000 566 74.016000 2398 3851 1 chr5B.!!$R3 1453
4 TraesCS1A01G418700 chr5D 555557062 555558460 1398 False 553.000000 553 74.134000 2457 3852 1 chr5D.!!$F3 1395
5 TraesCS1A01G418700 chr5D 503236151 503240705 4554 False 425.000000 425 91.830000 4876 5179 2 chr5D.!!$F4 303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 278 0.108945 AGGTTACGCGTAGGACTTGC 60.109 55.000 19.61 3.69 0.00 4.01 F
805 817 0.317479 GCGTGTCACTCAGGTAAGGT 59.683 55.000 0.65 0.00 34.79 3.50 F
1737 1749 1.691434 AGCCTAGTGCCAGAAGCTATC 59.309 52.381 0.00 0.00 44.23 2.08 F
1872 1884 5.587289 GCACAAAACAGATTTACTGGTCAA 58.413 37.500 0.00 0.00 46.91 3.18 F
3158 3170 5.484734 AAGTCCCACCCTTATAGTAGTCT 57.515 43.478 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 1884 5.818857 GCATGATGCAATACCTTTTGGAAAT 59.181 36.0 13.36 0.00 44.26 2.17 R
2736 2748 0.963962 CATTTGGCAGAGCACCAACT 59.036 50.0 0.00 0.00 46.66 3.16 R
3090 3102 0.310854 GTTGAGAACCACAAAGCCCG 59.689 55.0 0.00 0.00 0.00 6.13 R
3297 3315 0.623723 GGGCAAGGTCATGGTAGGAA 59.376 55.0 0.00 0.00 0.00 3.36 R
4375 4393 0.179059 ACAACATCCACACGTGCAGA 60.179 50.0 17.22 13.22 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.341846 TTTTTGACGCTCCCAAGAGT 57.658 45.000 0.00 0.00 42.59 3.24
81 83 6.655003 ACAAAGTGTTGTGCATATAAGCTACT 59.345 34.615 1.16 0.00 46.40 2.57
82 84 7.822334 ACAAAGTGTTGTGCATATAAGCTACTA 59.178 33.333 1.16 0.00 46.40 1.82
83 85 7.772332 AAGTGTTGTGCATATAAGCTACTAC 57.228 36.000 1.16 6.01 34.99 2.73
84 86 6.281405 AGTGTTGTGCATATAAGCTACTACC 58.719 40.000 1.16 1.61 34.99 3.18
85 87 5.465724 GTGTTGTGCATATAAGCTACTACCC 59.534 44.000 1.16 0.00 34.99 3.69
86 88 4.884668 TGTGCATATAAGCTACTACCCC 57.115 45.455 1.16 0.00 34.99 4.95
87 89 4.489737 TGTGCATATAAGCTACTACCCCT 58.510 43.478 1.16 0.00 34.99 4.79
88 90 4.527038 TGTGCATATAAGCTACTACCCCTC 59.473 45.833 1.16 0.00 34.99 4.30
89 91 4.773149 GTGCATATAAGCTACTACCCCTCT 59.227 45.833 1.16 0.00 34.99 3.69
90 92 5.017490 TGCATATAAGCTACTACCCCTCTC 58.983 45.833 1.16 0.00 34.99 3.20
91 93 5.222358 TGCATATAAGCTACTACCCCTCTCT 60.222 44.000 1.16 0.00 34.99 3.10
92 94 5.358725 GCATATAAGCTACTACCCCTCTCTC 59.641 48.000 0.00 0.00 0.00 3.20
93 95 6.486056 CATATAAGCTACTACCCCTCTCTCA 58.514 44.000 0.00 0.00 0.00 3.27
94 96 3.306472 AAGCTACTACCCCTCTCTCAG 57.694 52.381 0.00 0.00 0.00 3.35
95 97 2.210644 AGCTACTACCCCTCTCTCAGT 58.789 52.381 0.00 0.00 0.00 3.41
96 98 2.583566 AGCTACTACCCCTCTCTCAGTT 59.416 50.000 0.00 0.00 0.00 3.16
97 99 3.011934 AGCTACTACCCCTCTCTCAGTTT 59.988 47.826 0.00 0.00 0.00 2.66
98 100 4.230041 AGCTACTACCCCTCTCTCAGTTTA 59.770 45.833 0.00 0.00 0.00 2.01
99 101 4.338964 GCTACTACCCCTCTCTCAGTTTAC 59.661 50.000 0.00 0.00 0.00 2.01
100 102 4.399483 ACTACCCCTCTCTCAGTTTACA 57.601 45.455 0.00 0.00 0.00 2.41
101 103 4.345854 ACTACCCCTCTCTCAGTTTACAG 58.654 47.826 0.00 0.00 0.00 2.74
102 104 2.541466 ACCCCTCTCTCAGTTTACAGG 58.459 52.381 0.00 0.00 0.00 4.00
103 105 2.111972 ACCCCTCTCTCAGTTTACAGGA 59.888 50.000 0.00 0.00 0.00 3.86
104 106 3.246167 ACCCCTCTCTCAGTTTACAGGAT 60.246 47.826 0.00 0.00 0.00 3.24
105 107 3.133721 CCCCTCTCTCAGTTTACAGGATG 59.866 52.174 0.00 0.00 46.00 3.51
116 118 3.857854 CAGGATGTGCGCGTGCTC 61.858 66.667 23.16 19.26 43.34 4.26
119 121 2.202743 GATGTGCGCGTGCTCCTA 60.203 61.111 23.16 3.90 43.34 2.94
120 122 2.202797 ATGTGCGCGTGCTCCTAG 60.203 61.111 23.16 0.00 43.34 3.02
121 123 3.723235 ATGTGCGCGTGCTCCTAGG 62.723 63.158 23.16 0.82 43.34 3.02
122 124 4.436998 GTGCGCGTGCTCCTAGGT 62.437 66.667 23.16 0.00 43.34 3.08
123 125 4.129737 TGCGCGTGCTCCTAGGTC 62.130 66.667 23.16 2.70 43.34 3.85
125 127 3.812019 CGCGTGCTCCTAGGTCGT 61.812 66.667 9.08 0.00 0.00 4.34
126 128 2.102553 GCGTGCTCCTAGGTCGTC 59.897 66.667 9.08 0.00 0.00 4.20
127 129 2.697761 GCGTGCTCCTAGGTCGTCA 61.698 63.158 9.08 0.00 0.00 4.35
128 130 1.880894 CGTGCTCCTAGGTCGTCAA 59.119 57.895 9.08 0.00 0.00 3.18
129 131 0.456221 CGTGCTCCTAGGTCGTCAAT 59.544 55.000 9.08 0.00 0.00 2.57
130 132 1.135083 CGTGCTCCTAGGTCGTCAATT 60.135 52.381 9.08 0.00 0.00 2.32
131 133 2.674177 CGTGCTCCTAGGTCGTCAATTT 60.674 50.000 9.08 0.00 0.00 1.82
132 134 2.673368 GTGCTCCTAGGTCGTCAATTTG 59.327 50.000 9.08 0.00 0.00 2.32
133 135 2.565391 TGCTCCTAGGTCGTCAATTTGA 59.435 45.455 9.08 0.00 0.00 2.69
134 136 2.930682 GCTCCTAGGTCGTCAATTTGAC 59.069 50.000 17.76 17.76 43.65 3.18
143 145 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
144 146 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
145 147 7.316544 GTCGTCAATTTGACCAACCTAATAT 57.683 36.000 20.87 0.00 44.20 1.28
146 148 8.428186 GTCGTCAATTTGACCAACCTAATATA 57.572 34.615 20.87 0.00 44.20 0.86
147 149 8.885722 GTCGTCAATTTGACCAACCTAATATAA 58.114 33.333 20.87 0.00 44.20 0.98
148 150 9.104965 TCGTCAATTTGACCAACCTAATATAAG 57.895 33.333 20.87 4.88 44.20 1.73
149 151 8.889717 CGTCAATTTGACCAACCTAATATAAGT 58.110 33.333 20.87 0.00 44.20 2.24
151 153 9.967451 TCAATTTGACCAACCTAATATAAGTCA 57.033 29.630 0.00 0.00 0.00 3.41
206 208 9.965824 ACTTCAGATGTTTTATTTTCAAATCGT 57.034 25.926 0.00 0.00 0.00 3.73
261 263 9.990868 AAGGTGATAAAATTGGTAATCTAGGTT 57.009 29.630 0.00 0.00 0.00 3.50
265 267 9.048446 TGATAAAATTGGTAATCTAGGTTACGC 57.952 33.333 17.63 11.97 35.82 4.42
266 268 5.978934 AAATTGGTAATCTAGGTTACGCG 57.021 39.130 17.63 3.53 35.82 6.01
267 269 4.660789 ATTGGTAATCTAGGTTACGCGT 57.339 40.909 19.17 19.17 35.82 6.01
268 270 5.772825 ATTGGTAATCTAGGTTACGCGTA 57.227 39.130 16.41 16.41 35.82 4.42
269 271 4.818534 TGGTAATCTAGGTTACGCGTAG 57.181 45.455 19.61 9.45 35.82 3.51
270 272 3.565482 TGGTAATCTAGGTTACGCGTAGG 59.435 47.826 19.61 8.65 36.51 3.18
271 273 3.815401 GGTAATCTAGGTTACGCGTAGGA 59.185 47.826 19.61 13.25 36.51 2.94
272 274 3.978718 AATCTAGGTTACGCGTAGGAC 57.021 47.619 19.61 15.31 36.51 3.85
273 275 2.698855 TCTAGGTTACGCGTAGGACT 57.301 50.000 19.61 19.08 36.51 3.85
274 276 2.991250 TCTAGGTTACGCGTAGGACTT 58.009 47.619 19.61 14.25 36.51 3.01
275 277 2.679837 TCTAGGTTACGCGTAGGACTTG 59.320 50.000 19.61 17.42 36.51 3.16
276 278 0.108945 AGGTTACGCGTAGGACTTGC 60.109 55.000 19.61 3.69 0.00 4.01
277 279 0.388907 GGTTACGCGTAGGACTTGCA 60.389 55.000 19.61 0.00 0.00 4.08
278 280 1.421382 GTTACGCGTAGGACTTGCAA 58.579 50.000 19.61 0.00 0.00 4.08
279 281 1.794116 GTTACGCGTAGGACTTGCAAA 59.206 47.619 19.61 0.00 0.00 3.68
280 282 2.151881 TACGCGTAGGACTTGCAAAA 57.848 45.000 16.41 0.00 0.00 2.44
281 283 0.584876 ACGCGTAGGACTTGCAAAAC 59.415 50.000 11.67 0.00 0.00 2.43
282 284 0.865769 CGCGTAGGACTTGCAAAACT 59.134 50.000 0.00 1.41 0.00 2.66
283 285 1.398451 CGCGTAGGACTTGCAAAACTG 60.398 52.381 0.00 0.00 0.00 3.16
284 286 1.871039 GCGTAGGACTTGCAAAACTGA 59.129 47.619 0.00 0.00 0.00 3.41
285 287 2.289547 GCGTAGGACTTGCAAAACTGAA 59.710 45.455 0.00 0.00 0.00 3.02
286 288 3.242936 GCGTAGGACTTGCAAAACTGAAA 60.243 43.478 0.00 0.00 0.00 2.69
287 289 4.279659 CGTAGGACTTGCAAAACTGAAAC 58.720 43.478 0.00 0.00 0.00 2.78
288 290 3.420839 AGGACTTGCAAAACTGAAACG 57.579 42.857 0.00 0.00 0.00 3.60
289 291 2.099098 AGGACTTGCAAAACTGAAACGG 59.901 45.455 0.00 0.00 0.00 4.44
290 292 2.098443 GGACTTGCAAAACTGAAACGGA 59.902 45.455 0.00 0.00 0.00 4.69
291 293 3.363178 GACTTGCAAAACTGAAACGGAG 58.637 45.455 0.00 0.00 0.00 4.63
292 294 2.099098 ACTTGCAAAACTGAAACGGAGG 59.901 45.455 0.00 0.00 0.00 4.30
293 295 1.757682 TGCAAAACTGAAACGGAGGT 58.242 45.000 0.00 0.00 0.00 3.85
294 296 2.920524 TGCAAAACTGAAACGGAGGTA 58.079 42.857 0.00 0.00 0.00 3.08
295 297 2.875933 TGCAAAACTGAAACGGAGGTAG 59.124 45.455 0.00 0.00 0.00 3.18
296 298 2.876550 GCAAAACTGAAACGGAGGTAGT 59.123 45.455 0.00 0.00 0.00 2.73
297 299 4.060205 GCAAAACTGAAACGGAGGTAGTA 58.940 43.478 0.00 0.00 0.00 1.82
298 300 4.084171 GCAAAACTGAAACGGAGGTAGTAC 60.084 45.833 0.00 0.00 0.00 2.73
318 320 6.420638 AGTACCTGAAGTTAACAAACACCTT 58.579 36.000 8.61 0.00 0.00 3.50
327 329 3.883830 AACAAACACCTTGCATGAACA 57.116 38.095 0.00 0.00 38.75 3.18
330 332 5.726980 ACAAACACCTTGCATGAACATAT 57.273 34.783 0.00 0.00 38.75 1.78
331 333 6.832520 ACAAACACCTTGCATGAACATATA 57.167 33.333 0.00 0.00 38.75 0.86
332 334 6.620678 ACAAACACCTTGCATGAACATATAC 58.379 36.000 0.00 0.00 38.75 1.47
333 335 6.434028 ACAAACACCTTGCATGAACATATACT 59.566 34.615 0.00 0.00 38.75 2.12
334 336 6.683974 AACACCTTGCATGAACATATACTC 57.316 37.500 0.00 0.00 0.00 2.59
335 337 4.811024 ACACCTTGCATGAACATATACTCG 59.189 41.667 0.00 0.00 0.00 4.18
336 338 3.809832 ACCTTGCATGAACATATACTCGC 59.190 43.478 0.00 0.00 0.00 5.03
337 339 4.060900 CCTTGCATGAACATATACTCGCT 58.939 43.478 0.00 0.00 0.00 4.93
338 340 4.151335 CCTTGCATGAACATATACTCGCTC 59.849 45.833 0.00 0.00 0.00 5.03
339 341 3.653344 TGCATGAACATATACTCGCTCC 58.347 45.455 0.00 0.00 0.00 4.70
340 342 3.321968 TGCATGAACATATACTCGCTCCT 59.678 43.478 0.00 0.00 0.00 3.69
341 343 4.202253 TGCATGAACATATACTCGCTCCTT 60.202 41.667 0.00 0.00 0.00 3.36
342 344 4.752101 GCATGAACATATACTCGCTCCTTT 59.248 41.667 0.00 0.00 0.00 3.11
343 345 5.107298 GCATGAACATATACTCGCTCCTTTC 60.107 44.000 0.00 0.00 0.00 2.62
344 346 4.945246 TGAACATATACTCGCTCCTTTCC 58.055 43.478 0.00 0.00 0.00 3.13
345 347 3.644884 ACATATACTCGCTCCTTTCCG 57.355 47.619 0.00 0.00 0.00 4.30
346 348 2.296471 ACATATACTCGCTCCTTTCCGG 59.704 50.000 0.00 0.00 0.00 5.14
347 349 2.062971 TATACTCGCTCCTTTCCGGT 57.937 50.000 0.00 0.00 0.00 5.28
348 350 1.192428 ATACTCGCTCCTTTCCGGTT 58.808 50.000 0.00 0.00 0.00 4.44
349 351 0.971386 TACTCGCTCCTTTCCGGTTT 59.029 50.000 0.00 0.00 0.00 3.27
350 352 0.971386 ACTCGCTCCTTTCCGGTTTA 59.029 50.000 0.00 0.00 0.00 2.01
351 353 1.553704 ACTCGCTCCTTTCCGGTTTAT 59.446 47.619 0.00 0.00 0.00 1.40
352 354 2.762327 ACTCGCTCCTTTCCGGTTTATA 59.238 45.455 0.00 0.00 0.00 0.98
353 355 3.181478 ACTCGCTCCTTTCCGGTTTATAG 60.181 47.826 0.00 0.00 0.00 1.31
354 356 3.025978 TCGCTCCTTTCCGGTTTATAGA 58.974 45.455 0.00 0.00 0.00 1.98
355 357 3.067742 TCGCTCCTTTCCGGTTTATAGAG 59.932 47.826 0.00 3.02 0.00 2.43
356 358 3.132160 GCTCCTTTCCGGTTTATAGAGC 58.868 50.000 14.63 14.63 38.76 4.09
357 359 3.181464 GCTCCTTTCCGGTTTATAGAGCT 60.181 47.826 19.39 0.00 41.69 4.09
358 360 4.683671 GCTCCTTTCCGGTTTATAGAGCTT 60.684 45.833 19.39 0.00 41.69 3.74
359 361 5.452917 GCTCCTTTCCGGTTTATAGAGCTTA 60.453 44.000 19.39 0.00 41.69 3.09
360 362 6.741801 GCTCCTTTCCGGTTTATAGAGCTTAT 60.742 42.308 19.39 0.00 41.69 1.73
361 363 6.756221 TCCTTTCCGGTTTATAGAGCTTATC 58.244 40.000 0.00 0.00 0.00 1.75
362 364 6.553852 TCCTTTCCGGTTTATAGAGCTTATCT 59.446 38.462 0.00 0.00 42.47 1.98
363 365 6.869388 CCTTTCCGGTTTATAGAGCTTATCTC 59.131 42.308 0.00 0.00 39.64 2.75
364 366 6.971726 TTCCGGTTTATAGAGCTTATCTCA 57.028 37.500 0.00 0.00 44.35 3.27
365 367 6.971726 TCCGGTTTATAGAGCTTATCTCAA 57.028 37.500 0.00 0.00 44.35 3.02
366 368 7.356089 TCCGGTTTATAGAGCTTATCTCAAA 57.644 36.000 0.00 0.00 44.35 2.69
367 369 7.788026 TCCGGTTTATAGAGCTTATCTCAAAA 58.212 34.615 0.00 0.00 44.35 2.44
368 370 8.429641 TCCGGTTTATAGAGCTTATCTCAAAAT 58.570 33.333 0.00 0.00 44.35 1.82
369 371 9.057089 CCGGTTTATAGAGCTTATCTCAAAATT 57.943 33.333 0.00 0.00 44.35 1.82
385 387 8.989653 TCTCAAAATTTTTAGTTGTTTCCGTT 57.010 26.923 11.00 0.00 0.00 4.44
386 388 9.425577 TCTCAAAATTTTTAGTTGTTTCCGTTT 57.574 25.926 11.00 0.00 0.00 3.60
393 395 8.859517 TTTTTAGTTGTTTCCGTTTTATGAGG 57.140 30.769 0.00 0.00 0.00 3.86
394 396 4.499037 AGTTGTTTCCGTTTTATGAGGC 57.501 40.909 0.00 0.00 0.00 4.70
395 397 4.142038 AGTTGTTTCCGTTTTATGAGGCT 58.858 39.130 0.00 0.00 0.00 4.58
396 398 4.583073 AGTTGTTTCCGTTTTATGAGGCTT 59.417 37.500 0.00 0.00 0.00 4.35
397 399 5.766174 AGTTGTTTCCGTTTTATGAGGCTTA 59.234 36.000 0.00 0.00 0.00 3.09
398 400 6.263617 AGTTGTTTCCGTTTTATGAGGCTTAA 59.736 34.615 0.00 0.00 0.00 1.85
399 401 6.827586 TGTTTCCGTTTTATGAGGCTTAAT 57.172 33.333 0.00 0.00 0.00 1.40
400 402 7.222000 TGTTTCCGTTTTATGAGGCTTAATT 57.778 32.000 0.00 0.00 0.00 1.40
401 403 7.662897 TGTTTCCGTTTTATGAGGCTTAATTT 58.337 30.769 0.00 0.00 0.00 1.82
402 404 7.596995 TGTTTCCGTTTTATGAGGCTTAATTTG 59.403 33.333 0.00 0.00 0.00 2.32
403 405 7.455641 TTCCGTTTTATGAGGCTTAATTTGA 57.544 32.000 0.00 0.00 0.00 2.69
404 406 7.639113 TCCGTTTTATGAGGCTTAATTTGAT 57.361 32.000 0.00 0.00 0.00 2.57
405 407 8.062065 TCCGTTTTATGAGGCTTAATTTGATT 57.938 30.769 0.00 0.00 0.00 2.57
406 408 7.973388 TCCGTTTTATGAGGCTTAATTTGATTG 59.027 33.333 0.00 0.00 0.00 2.67
407 409 7.759433 CCGTTTTATGAGGCTTAATTTGATTGT 59.241 33.333 0.00 0.00 0.00 2.71
408 410 9.139174 CGTTTTATGAGGCTTAATTTGATTGTT 57.861 29.630 0.00 0.00 0.00 2.83
413 415 7.523293 TGAGGCTTAATTTGATTGTTTCTCA 57.477 32.000 0.00 0.00 0.00 3.27
414 416 8.125978 TGAGGCTTAATTTGATTGTTTCTCAT 57.874 30.769 0.00 0.00 0.00 2.90
415 417 8.246180 TGAGGCTTAATTTGATTGTTTCTCATC 58.754 33.333 0.00 0.00 0.00 2.92
416 418 8.125978 AGGCTTAATTTGATTGTTTCTCATCA 57.874 30.769 0.00 0.00 0.00 3.07
417 419 8.031277 AGGCTTAATTTGATTGTTTCTCATCAC 58.969 33.333 0.00 0.00 0.00 3.06
418 420 7.814107 GGCTTAATTTGATTGTTTCTCATCACA 59.186 33.333 0.00 0.00 0.00 3.58
419 421 9.362539 GCTTAATTTGATTGTTTCTCATCACAT 57.637 29.630 0.00 0.00 0.00 3.21
423 425 8.752766 ATTTGATTGTTTCTCATCACATGTTC 57.247 30.769 0.00 0.00 0.00 3.18
424 426 6.880942 TGATTGTTTCTCATCACATGTTCA 57.119 33.333 0.00 0.00 0.00 3.18
425 427 7.274603 TGATTGTTTCTCATCACATGTTCAA 57.725 32.000 0.00 0.00 0.00 2.69
426 428 7.714703 TGATTGTTTCTCATCACATGTTCAAA 58.285 30.769 0.00 0.00 0.00 2.69
427 429 8.361889 TGATTGTTTCTCATCACATGTTCAAAT 58.638 29.630 0.00 0.00 0.00 2.32
428 430 9.199982 GATTGTTTCTCATCACATGTTCAAATT 57.800 29.630 0.00 0.00 0.00 1.82
429 431 8.578308 TTGTTTCTCATCACATGTTCAAATTC 57.422 30.769 0.00 0.00 0.00 2.17
430 432 7.147312 TGTTTCTCATCACATGTTCAAATTCC 58.853 34.615 0.00 0.00 0.00 3.01
431 433 6.897706 TTCTCATCACATGTTCAAATTCCA 57.102 33.333 0.00 0.00 0.00 3.53
432 434 6.897706 TCTCATCACATGTTCAAATTCCAA 57.102 33.333 0.00 0.00 0.00 3.53
433 435 6.916440 TCTCATCACATGTTCAAATTCCAAG 58.084 36.000 0.00 0.00 0.00 3.61
434 436 6.028146 TCATCACATGTTCAAATTCCAAGG 57.972 37.500 0.00 0.00 0.00 3.61
435 437 5.539574 TCATCACATGTTCAAATTCCAAGGT 59.460 36.000 0.00 0.00 0.00 3.50
436 438 5.199024 TCACATGTTCAAATTCCAAGGTG 57.801 39.130 0.00 0.00 0.00 4.00
437 439 3.742369 CACATGTTCAAATTCCAAGGTGC 59.258 43.478 0.00 0.00 0.00 5.01
438 440 3.387374 ACATGTTCAAATTCCAAGGTGCA 59.613 39.130 0.00 0.00 0.00 4.57
439 441 4.040706 ACATGTTCAAATTCCAAGGTGCAT 59.959 37.500 0.00 0.00 0.00 3.96
440 442 4.686191 TGTTCAAATTCCAAGGTGCATT 57.314 36.364 0.00 0.00 0.00 3.56
441 443 5.798125 TGTTCAAATTCCAAGGTGCATTA 57.202 34.783 0.00 0.00 0.00 1.90
442 444 6.166984 TGTTCAAATTCCAAGGTGCATTAA 57.833 33.333 0.00 0.00 0.00 1.40
443 445 6.586344 TGTTCAAATTCCAAGGTGCATTAAA 58.414 32.000 0.00 0.00 0.00 1.52
444 446 7.222872 TGTTCAAATTCCAAGGTGCATTAAAT 58.777 30.769 0.00 0.00 0.00 1.40
445 447 7.387397 TGTTCAAATTCCAAGGTGCATTAAATC 59.613 33.333 0.00 0.00 0.00 2.17
446 448 7.002250 TCAAATTCCAAGGTGCATTAAATCA 57.998 32.000 0.00 0.00 0.00 2.57
447 449 7.622713 TCAAATTCCAAGGTGCATTAAATCAT 58.377 30.769 0.00 0.00 0.00 2.45
448 450 8.102047 TCAAATTCCAAGGTGCATTAAATCATT 58.898 29.630 0.00 0.00 0.00 2.57
449 451 7.852971 AATTCCAAGGTGCATTAAATCATTG 57.147 32.000 0.00 0.00 0.00 2.82
450 452 4.757594 TCCAAGGTGCATTAAATCATTGC 58.242 39.130 0.00 0.00 36.91 3.56
451 453 4.222366 TCCAAGGTGCATTAAATCATTGCA 59.778 37.500 0.00 0.00 43.63 4.08
452 454 5.104859 TCCAAGGTGCATTAAATCATTGCAT 60.105 36.000 4.14 0.00 46.90 3.96
453 455 5.007234 CCAAGGTGCATTAAATCATTGCATG 59.993 40.000 4.14 0.00 46.90 4.06
454 456 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
455 457 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
456 458 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
457 459 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
458 460 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
459 461 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
460 462 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
461 463 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
462 464 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
466 468 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
467 469 7.812690 ATCATTGCATGCAAGTATTAAGAGA 57.187 32.000 34.15 20.12 39.47 3.10
468 470 7.628769 TCATTGCATGCAAGTATTAAGAGAA 57.371 32.000 34.15 10.64 39.47 2.87
469 471 8.054152 TCATTGCATGCAAGTATTAAGAGAAA 57.946 30.769 34.15 10.19 39.47 2.52
470 472 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
471 473 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
472 474 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
473 475 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
474 476 8.522003 TGCATGCAAGTATTAAGAGAAAATTGA 58.478 29.630 20.30 0.00 0.00 2.57
475 477 8.801913 GCATGCAAGTATTAAGAGAAAATTGAC 58.198 33.333 14.21 0.00 0.00 3.18
476 478 9.003112 CATGCAAGTATTAAGAGAAAATTGACG 57.997 33.333 0.00 0.00 0.00 4.35
477 479 8.317891 TGCAAGTATTAAGAGAAAATTGACGA 57.682 30.769 0.00 0.00 0.00 4.20
478 480 8.779303 TGCAAGTATTAAGAGAAAATTGACGAA 58.221 29.630 0.00 0.00 0.00 3.85
479 481 9.774742 GCAAGTATTAAGAGAAAATTGACGAAT 57.225 29.630 0.00 0.00 0.00 3.34
481 483 9.774742 AAGTATTAAGAGAAAATTGACGAATGC 57.225 29.630 0.00 0.00 0.00 3.56
482 484 8.946085 AGTATTAAGAGAAAATTGACGAATGCA 58.054 29.630 0.00 0.00 0.00 3.96
483 485 9.722056 GTATTAAGAGAAAATTGACGAATGCAT 57.278 29.630 0.00 0.00 0.00 3.96
484 486 8.624701 ATTAAGAGAAAATTGACGAATGCATG 57.375 30.769 0.00 0.00 0.00 4.06
485 487 5.633830 AGAGAAAATTGACGAATGCATGT 57.366 34.783 0.00 0.00 0.00 3.21
486 488 6.741992 AGAGAAAATTGACGAATGCATGTA 57.258 33.333 0.00 0.00 0.00 2.29
487 489 6.546395 AGAGAAAATTGACGAATGCATGTAC 58.454 36.000 0.00 0.00 0.00 2.90
488 490 6.372659 AGAGAAAATTGACGAATGCATGTACT 59.627 34.615 0.00 0.00 0.00 2.73
489 491 6.913170 AGAAAATTGACGAATGCATGTACTT 58.087 32.000 0.00 0.00 0.00 2.24
490 492 7.370383 AGAAAATTGACGAATGCATGTACTTT 58.630 30.769 0.00 0.00 0.00 2.66
491 493 8.511321 AGAAAATTGACGAATGCATGTACTTTA 58.489 29.630 0.00 0.00 0.00 1.85
492 494 9.289303 GAAAATTGACGAATGCATGTACTTTAT 57.711 29.630 0.00 0.00 0.00 1.40
493 495 8.619146 AAATTGACGAATGCATGTACTTTATG 57.381 30.769 0.00 0.00 0.00 1.90
522 524 7.485418 CATGCATTGCAATTAATACATTGGT 57.515 32.000 16.46 0.00 43.62 3.67
523 525 8.590719 CATGCATTGCAATTAATACATTGGTA 57.409 30.769 16.46 0.00 43.62 3.25
524 526 9.043079 CATGCATTGCAATTAATACATTGGTAA 57.957 29.630 16.46 0.00 43.62 2.85
525 527 9.610705 ATGCATTGCAATTAATACATTGGTAAA 57.389 25.926 16.46 0.00 43.62 2.01
526 528 8.877779 TGCATTGCAATTAATACATTGGTAAAC 58.122 29.630 9.83 0.00 34.76 2.01
527 529 8.877779 GCATTGCAATTAATACATTGGTAAACA 58.122 29.630 9.83 0.00 35.07 2.83
561 563 9.898152 TTGAGAAAAACAAAAGATTAATTGGGT 57.102 25.926 0.00 0.00 0.00 4.51
562 564 9.323985 TGAGAAAAACAAAAGATTAATTGGGTG 57.676 29.630 0.00 0.00 0.00 4.61
563 565 8.153479 AGAAAAACAAAAGATTAATTGGGTGC 57.847 30.769 0.00 0.00 0.00 5.01
564 566 7.992608 AGAAAAACAAAAGATTAATTGGGTGCT 59.007 29.630 0.00 0.00 0.00 4.40
565 567 8.518430 AAAAACAAAAGATTAATTGGGTGCTT 57.482 26.923 0.00 0.00 0.00 3.91
566 568 8.518430 AAAACAAAAGATTAATTGGGTGCTTT 57.482 26.923 0.00 0.00 0.00 3.51
567 569 8.518430 AAACAAAAGATTAATTGGGTGCTTTT 57.482 26.923 0.00 0.00 36.37 2.27
569 571 6.372981 CAAAAGATTAATTGGGTGCTTTTGC 58.627 36.000 17.67 0.00 42.57 3.68
587 589 8.972073 GCTTTTGCAAACTACAAAAAGTATTC 57.028 30.769 12.39 0.00 44.07 1.75
588 590 8.061857 GCTTTTGCAAACTACAAAAAGTATTCC 58.938 33.333 12.39 0.00 44.07 3.01
589 591 9.092876 CTTTTGCAAACTACAAAAAGTATTCCA 57.907 29.630 12.39 0.00 44.07 3.53
590 592 7.995463 TTGCAAACTACAAAAAGTATTCCAC 57.005 32.000 0.00 0.00 30.93 4.02
591 593 6.508777 TGCAAACTACAAAAAGTATTCCACC 58.491 36.000 0.00 0.00 30.93 4.61
592 594 6.096987 TGCAAACTACAAAAAGTATTCCACCA 59.903 34.615 0.00 0.00 30.93 4.17
593 595 6.419710 GCAAACTACAAAAAGTATTCCACCAC 59.580 38.462 0.00 0.00 30.93 4.16
594 596 7.683463 GCAAACTACAAAAAGTATTCCACCACT 60.683 37.037 0.00 0.00 30.93 4.00
595 597 7.506328 AACTACAAAAAGTATTCCACCACTC 57.494 36.000 0.00 0.00 30.93 3.51
596 598 6.597562 ACTACAAAAAGTATTCCACCACTCA 58.402 36.000 0.00 0.00 30.93 3.41
597 599 7.231467 ACTACAAAAAGTATTCCACCACTCAT 58.769 34.615 0.00 0.00 30.93 2.90
598 600 6.575162 ACAAAAAGTATTCCACCACTCATC 57.425 37.500 0.00 0.00 0.00 2.92
599 601 6.068010 ACAAAAAGTATTCCACCACTCATCA 58.932 36.000 0.00 0.00 0.00 3.07
600 602 6.721208 ACAAAAAGTATTCCACCACTCATCAT 59.279 34.615 0.00 0.00 0.00 2.45
601 603 7.094205 ACAAAAAGTATTCCACCACTCATCATC 60.094 37.037 0.00 0.00 0.00 2.92
602 604 5.965033 AAGTATTCCACCACTCATCATCT 57.035 39.130 0.00 0.00 0.00 2.90
603 605 7.437713 AAAGTATTCCACCACTCATCATCTA 57.562 36.000 0.00 0.00 0.00 1.98
604 606 6.412362 AGTATTCCACCACTCATCATCTAC 57.588 41.667 0.00 0.00 0.00 2.59
605 607 4.696479 ATTCCACCACTCATCATCTACC 57.304 45.455 0.00 0.00 0.00 3.18
606 608 3.404869 TCCACCACTCATCATCTACCT 57.595 47.619 0.00 0.00 0.00 3.08
607 609 3.724478 TCCACCACTCATCATCTACCTT 58.276 45.455 0.00 0.00 0.00 3.50
608 610 3.452264 TCCACCACTCATCATCTACCTTG 59.548 47.826 0.00 0.00 0.00 3.61
609 611 3.432749 CCACCACTCATCATCTACCTTGG 60.433 52.174 0.00 0.00 0.00 3.61
610 612 3.198635 CACCACTCATCATCTACCTTGGT 59.801 47.826 0.00 0.00 36.53 3.67
611 613 3.846588 ACCACTCATCATCTACCTTGGTT 59.153 43.478 0.00 0.00 31.99 3.67
612 614 4.194640 CCACTCATCATCTACCTTGGTTG 58.805 47.826 0.00 0.00 0.00 3.77
613 615 4.194640 CACTCATCATCTACCTTGGTTGG 58.805 47.826 0.00 0.00 0.00 3.77
614 616 3.846588 ACTCATCATCTACCTTGGTTGGT 59.153 43.478 0.00 0.00 43.66 3.67
615 617 4.194640 CTCATCATCTACCTTGGTTGGTG 58.805 47.826 7.94 7.94 41.05 4.17
616 618 3.843619 TCATCATCTACCTTGGTTGGTGA 59.156 43.478 16.81 16.81 41.05 4.02
617 619 3.981071 TCATCTACCTTGGTTGGTGAG 57.019 47.619 11.95 0.00 41.05 3.51
618 620 3.516586 TCATCTACCTTGGTTGGTGAGA 58.483 45.455 11.95 2.97 41.05 3.27
619 621 4.104086 TCATCTACCTTGGTTGGTGAGAT 58.896 43.478 11.95 5.00 41.05 2.75
620 622 4.536090 TCATCTACCTTGGTTGGTGAGATT 59.464 41.667 11.95 0.00 41.05 2.40
621 623 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
622 624 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
623 625 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
624 626 4.670896 ACCTTGGTTGGTGAGATTTTTG 57.329 40.909 0.00 0.00 39.17 2.44
625 627 4.285863 ACCTTGGTTGGTGAGATTTTTGA 58.714 39.130 0.00 0.00 39.17 2.69
626 628 4.714308 ACCTTGGTTGGTGAGATTTTTGAA 59.286 37.500 0.00 0.00 39.17 2.69
627 629 5.366477 ACCTTGGTTGGTGAGATTTTTGAAT 59.634 36.000 0.00 0.00 39.17 2.57
628 630 6.126796 ACCTTGGTTGGTGAGATTTTTGAATT 60.127 34.615 0.00 0.00 39.17 2.17
629 631 6.203338 CCTTGGTTGGTGAGATTTTTGAATTG 59.797 38.462 0.00 0.00 0.00 2.32
630 632 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
631 633 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
632 634 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
633 635 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
634 636 4.834496 TGGTGAGATTTTTGAATTGAGCCT 59.166 37.500 0.00 0.00 0.00 4.58
635 637 5.305128 TGGTGAGATTTTTGAATTGAGCCTT 59.695 36.000 0.00 0.00 0.00 4.35
636 638 6.493115 TGGTGAGATTTTTGAATTGAGCCTTA 59.507 34.615 0.00 0.00 0.00 2.69
637 639 7.178983 TGGTGAGATTTTTGAATTGAGCCTTAT 59.821 33.333 0.00 0.00 0.00 1.73
638 640 8.686334 GGTGAGATTTTTGAATTGAGCCTTATA 58.314 33.333 0.00 0.00 0.00 0.98
648 650 9.912634 TTGAATTGAGCCTTATAAACTGAAAAG 57.087 29.630 0.00 0.00 0.00 2.27
649 651 8.522830 TGAATTGAGCCTTATAAACTGAAAAGG 58.477 33.333 0.00 0.00 41.23 3.11
650 652 8.650143 AATTGAGCCTTATAAACTGAAAAGGA 57.350 30.769 4.19 0.00 40.85 3.36
651 653 7.687941 TTGAGCCTTATAAACTGAAAAGGAG 57.312 36.000 4.19 0.00 40.85 3.69
652 654 6.180472 TGAGCCTTATAAACTGAAAAGGAGG 58.820 40.000 4.19 0.00 40.85 4.30
653 655 5.510430 AGCCTTATAAACTGAAAAGGAGGG 58.490 41.667 4.19 0.00 40.85 4.30
654 656 5.253096 AGCCTTATAAACTGAAAAGGAGGGA 59.747 40.000 4.19 0.00 40.85 4.20
720 724 0.899717 GCCATGGGTTTTCCTCTGCA 60.900 55.000 15.13 0.00 40.46 4.41
743 747 9.345517 TGCATCTTTTTCTAATGATCTTTTTCG 57.654 29.630 0.00 0.00 0.00 3.46
767 771 8.528643 TCGTTGAGATGGAGTCTTTTTCTATTA 58.471 33.333 0.00 0.00 37.29 0.98
805 817 0.317479 GCGTGTCACTCAGGTAAGGT 59.683 55.000 0.65 0.00 34.79 3.50
821 833 8.225416 TCAGGTAAGGTTATGATAGCTCTAGAA 58.775 37.037 0.00 0.00 0.00 2.10
1737 1749 1.691434 AGCCTAGTGCCAGAAGCTATC 59.309 52.381 0.00 0.00 44.23 2.08
1842 1854 5.769662 CAGCCTCCCTATGTTGCAATTTATA 59.230 40.000 0.59 1.82 0.00 0.98
1872 1884 5.587289 GCACAAAACAGATTTACTGGTCAA 58.413 37.500 0.00 0.00 46.91 3.18
2425 2437 6.588204 TCAAACTTAAGTAGCCTTGAACTGA 58.412 36.000 15.00 0.00 30.27 3.41
2483 2495 5.872963 TCCAGAATCAATCACTATGATGGG 58.127 41.667 0.00 0.00 37.15 4.00
3020 3032 8.475639 GTCTATGTTGAACCTCTCCTACAATAA 58.524 37.037 0.00 0.00 0.00 1.40
3088 3100 5.943416 ACGACACAATCTTTCATTGGGAATA 59.057 36.000 3.59 0.00 36.04 1.75
3090 3102 6.530019 ACACAATCTTTCATTGGGAATACC 57.470 37.500 3.59 0.00 36.04 2.73
3158 3170 5.484734 AAGTCCCACCCTTATAGTAGTCT 57.515 43.478 0.00 0.00 0.00 3.24
3297 3315 3.164268 TGCCACAAGCCATCAATTAGTT 58.836 40.909 0.00 0.00 42.71 2.24
3312 3330 7.027874 TCAATTAGTTTCCTACCATGACCTT 57.972 36.000 0.00 0.00 0.00 3.50
3655 3673 4.020839 TGGATATCATGCTCGATGTGTCAT 60.021 41.667 4.83 0.00 33.29 3.06
3860 3878 2.224892 TGGCACCAGGTACATTGCTAAA 60.225 45.455 4.39 0.00 35.24 1.85
4128 4146 2.928334 CCATCTACTGCAAGGCTCATT 58.072 47.619 0.00 0.00 39.30 2.57
4192 4210 2.435372 TTGAGTTGGGTTTGCTCTGT 57.565 45.000 0.00 0.00 0.00 3.41
4249 4267 3.607439 CGATGTGGTTGCGATATTGAAC 58.393 45.455 0.00 0.00 0.00 3.18
4311 4329 6.319048 AGAGAGTGTGGATTGGTAAATCAT 57.681 37.500 1.28 0.00 43.51 2.45
4374 4392 4.343814 TCCATCAACGGCACTAGATAATCA 59.656 41.667 0.00 0.00 0.00 2.57
4375 4393 5.012046 TCCATCAACGGCACTAGATAATCAT 59.988 40.000 0.00 0.00 0.00 2.45
4378 4396 5.532557 TCAACGGCACTAGATAATCATCTG 58.467 41.667 0.00 0.00 41.75 2.90
4379 4397 3.919216 ACGGCACTAGATAATCATCTGC 58.081 45.455 0.00 0.00 41.75 4.26
4380 4398 3.321968 ACGGCACTAGATAATCATCTGCA 59.678 43.478 0.00 0.00 41.75 4.41
4381 4399 3.677121 CGGCACTAGATAATCATCTGCAC 59.323 47.826 0.00 0.00 41.75 4.57
4382 4400 3.677121 GGCACTAGATAATCATCTGCACG 59.323 47.826 0.00 0.00 41.75 5.34
4383 4401 4.302455 GCACTAGATAATCATCTGCACGT 58.698 43.478 0.00 0.00 41.75 4.49
4384 4402 4.149571 GCACTAGATAATCATCTGCACGTG 59.850 45.833 12.28 12.28 41.75 4.49
4386 4404 5.174579 CACTAGATAATCATCTGCACGTGTG 59.825 44.000 18.38 10.72 41.75 3.82
4408 4502 4.926238 TGGATGTTGTTGTTGTTGTTGTTC 59.074 37.500 0.00 0.00 0.00 3.18
4414 4508 6.019479 TGTTGTTGTTGTTGTTGTTCTTGTTC 60.019 34.615 0.00 0.00 0.00 3.18
4420 4514 6.419413 TGTTGTTGTTGTTCTTGTTCTTGTTC 59.581 34.615 0.00 0.00 0.00 3.18
4554 4712 7.756272 TCCTTCTTTTTGGACTTTCGTTAAAAC 59.244 33.333 0.00 0.00 0.00 2.43
4565 4723 6.301486 ACTTTCGTTAAAACCTAGGGTTGAT 58.699 36.000 14.28 0.00 46.20 2.57
4595 4753 5.180367 TGAAAATTGATTCGTGCAAGTCA 57.820 34.783 0.00 0.00 31.80 3.41
4684 4842 0.321653 AAGAAATCAGGCGTCGGCTT 60.322 50.000 19.96 4.23 35.88 4.35
4739 4897 1.089920 GTTGCATGGCTCGTCTTCAT 58.910 50.000 0.00 0.00 0.00 2.57
4811 4970 4.684703 AGTGGTTTTTCTAGATCGTTGACG 59.315 41.667 0.00 0.00 41.45 4.35
4827 4986 7.837202 TCGTTGACGGTAATGATTCTTATTT 57.163 32.000 3.48 0.00 40.29 1.40
4862 5021 4.524802 TCATTGTAAGGGCATCTCCAAT 57.475 40.909 0.00 0.00 36.21 3.16
4881 5040 4.675029 CCGACCCTCAAACGCGGT 62.675 66.667 12.47 0.00 37.35 5.68
4902 5061 5.993441 CGGTCAAAGTAAGAAAAACCCTCTA 59.007 40.000 0.00 0.00 0.00 2.43
4942 9350 6.785076 TGACCTTGGACATATAAAAGTTCCA 58.215 36.000 0.00 0.00 0.00 3.53
4945 9353 7.892609 ACCTTGGACATATAAAAGTTCCAAAC 58.107 34.615 3.16 0.00 35.67 2.93
5100 9511 6.540438 TTCTTGGATAAGAATCTACACCGT 57.460 37.500 0.00 0.00 45.46 4.83
5154 9565 2.111384 GACAGCATCTAGGGTTCCTCA 58.889 52.381 0.00 0.00 34.61 3.86
5161 9572 7.072454 ACAGCATCTAGGGTTCCTCAAATAATA 59.928 37.037 0.00 0.00 34.61 0.98
5243 9654 7.559590 AAATAAAGAATTCCAGACATCTCGG 57.440 36.000 0.65 0.00 0.00 4.63
5249 9661 3.604875 TTCCAGACATCTCGGTAAACC 57.395 47.619 0.00 0.00 0.00 3.27
5272 9684 7.320399 ACCAAAAACAGTCTAAACCAAAGAAG 58.680 34.615 0.00 0.00 0.00 2.85
5273 9685 7.177744 ACCAAAAACAGTCTAAACCAAAGAAGA 59.822 33.333 0.00 0.00 0.00 2.87
5274 9686 8.197439 CCAAAAACAGTCTAAACCAAAGAAGAT 58.803 33.333 0.00 0.00 0.00 2.40
5275 9687 9.023967 CAAAAACAGTCTAAACCAAAGAAGATG 57.976 33.333 0.00 0.00 0.00 2.90
5276 9688 5.948992 ACAGTCTAAACCAAAGAAGATGC 57.051 39.130 0.00 0.00 0.00 3.91
5277 9689 5.625150 ACAGTCTAAACCAAAGAAGATGCT 58.375 37.500 0.00 0.00 0.00 3.79
5278 9690 5.703130 ACAGTCTAAACCAAAGAAGATGCTC 59.297 40.000 0.00 0.00 0.00 4.26
5279 9691 5.936956 CAGTCTAAACCAAAGAAGATGCTCT 59.063 40.000 0.00 0.00 0.00 4.09
5280 9692 6.429385 CAGTCTAAACCAAAGAAGATGCTCTT 59.571 38.462 0.00 0.00 39.87 2.85
5281 9693 7.604164 CAGTCTAAACCAAAGAAGATGCTCTTA 59.396 37.037 0.00 0.00 36.73 2.10
5282 9694 8.325046 AGTCTAAACCAAAGAAGATGCTCTTAT 58.675 33.333 0.00 0.00 36.73 1.73
5283 9695 8.394121 GTCTAAACCAAAGAAGATGCTCTTATG 58.606 37.037 0.00 0.92 36.73 1.90
5284 9696 8.103305 TCTAAACCAAAGAAGATGCTCTTATGT 58.897 33.333 0.00 0.00 36.73 2.29
5285 9697 9.383519 CTAAACCAAAGAAGATGCTCTTATGTA 57.616 33.333 0.00 0.00 36.73 2.29
5286 9698 8.635765 AAACCAAAGAAGATGCTCTTATGTAA 57.364 30.769 0.00 0.00 36.73 2.41
5287 9699 7.617041 ACCAAAGAAGATGCTCTTATGTAAC 57.383 36.000 0.00 0.00 36.73 2.50
5288 9700 6.599638 ACCAAAGAAGATGCTCTTATGTAACC 59.400 38.462 0.00 0.00 36.73 2.85
5289 9701 6.599244 CCAAAGAAGATGCTCTTATGTAACCA 59.401 38.462 0.00 0.00 36.73 3.67
5290 9702 7.121168 CCAAAGAAGATGCTCTTATGTAACCAA 59.879 37.037 0.00 0.00 36.73 3.67
5291 9703 7.856145 AAGAAGATGCTCTTATGTAACCAAG 57.144 36.000 0.00 0.00 36.73 3.61
5292 9704 6.352516 AGAAGATGCTCTTATGTAACCAAGG 58.647 40.000 0.00 0.00 36.73 3.61
5293 9705 5.041191 AGATGCTCTTATGTAACCAAGGG 57.959 43.478 0.00 0.00 0.00 3.95
5294 9706 4.721776 AGATGCTCTTATGTAACCAAGGGA 59.278 41.667 0.00 0.00 0.00 4.20
5295 9707 4.919774 TGCTCTTATGTAACCAAGGGAA 57.080 40.909 0.00 0.00 0.00 3.97
5296 9708 5.249780 TGCTCTTATGTAACCAAGGGAAA 57.750 39.130 0.00 0.00 0.00 3.13
5297 9709 5.253330 TGCTCTTATGTAACCAAGGGAAAG 58.747 41.667 0.00 0.00 0.00 2.62
5298 9710 4.640647 GCTCTTATGTAACCAAGGGAAAGG 59.359 45.833 0.00 0.00 0.00 3.11
5299 9711 5.572885 GCTCTTATGTAACCAAGGGAAAGGA 60.573 44.000 0.00 0.00 0.00 3.36
5300 9712 5.812286 TCTTATGTAACCAAGGGAAAGGAC 58.188 41.667 0.00 0.00 0.00 3.85
5301 9713 5.550403 TCTTATGTAACCAAGGGAAAGGACT 59.450 40.000 0.00 0.00 0.00 3.85
5302 9714 3.502123 TGTAACCAAGGGAAAGGACTG 57.498 47.619 0.00 0.00 0.00 3.51
5303 9715 3.050089 TGTAACCAAGGGAAAGGACTGA 58.950 45.455 0.00 0.00 0.00 3.41
5304 9716 2.658807 AACCAAGGGAAAGGACTGAC 57.341 50.000 0.00 0.00 0.00 3.51
5305 9717 1.821088 ACCAAGGGAAAGGACTGACT 58.179 50.000 0.00 0.00 0.00 3.41
5306 9718 2.986050 ACCAAGGGAAAGGACTGACTA 58.014 47.619 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.435068 ACTTTGTGTATGAAGTGAATACCAC 57.565 36.000 0.00 0.00 46.03 4.16
81 83 3.335786 TCCTGTAAACTGAGAGAGGGGTA 59.664 47.826 0.00 0.00 0.00 3.69
82 84 2.111972 TCCTGTAAACTGAGAGAGGGGT 59.888 50.000 0.00 0.00 0.00 4.95
83 85 2.821437 TCCTGTAAACTGAGAGAGGGG 58.179 52.381 0.00 0.00 0.00 4.79
84 86 3.772025 ACATCCTGTAAACTGAGAGAGGG 59.228 47.826 0.00 0.00 0.00 4.30
85 87 4.753233 CACATCCTGTAAACTGAGAGAGG 58.247 47.826 0.00 0.00 0.00 3.69
86 88 4.180057 GCACATCCTGTAAACTGAGAGAG 58.820 47.826 0.00 0.00 0.00 3.20
87 89 3.367395 CGCACATCCTGTAAACTGAGAGA 60.367 47.826 0.00 0.00 0.00 3.10
88 90 2.926200 CGCACATCCTGTAAACTGAGAG 59.074 50.000 0.00 0.00 0.00 3.20
89 91 2.930887 GCGCACATCCTGTAAACTGAGA 60.931 50.000 0.30 0.00 0.00 3.27
90 92 1.394917 GCGCACATCCTGTAAACTGAG 59.605 52.381 0.30 0.00 0.00 3.35
91 93 1.438651 GCGCACATCCTGTAAACTGA 58.561 50.000 0.30 0.00 0.00 3.41
92 94 0.095245 CGCGCACATCCTGTAAACTG 59.905 55.000 8.75 0.00 0.00 3.16
93 95 0.320421 ACGCGCACATCCTGTAAACT 60.320 50.000 5.73 0.00 0.00 2.66
94 96 0.179225 CACGCGCACATCCTGTAAAC 60.179 55.000 5.73 0.00 0.00 2.01
95 97 1.906994 GCACGCGCACATCCTGTAAA 61.907 55.000 5.73 0.00 38.36 2.01
96 98 2.387445 GCACGCGCACATCCTGTAA 61.387 57.895 5.73 0.00 38.36 2.41
97 99 2.813474 GCACGCGCACATCCTGTA 60.813 61.111 5.73 0.00 38.36 2.74
98 100 4.687215 AGCACGCGCACATCCTGT 62.687 61.111 5.73 0.00 42.27 4.00
99 101 3.857854 GAGCACGCGCACATCCTG 61.858 66.667 5.73 0.00 42.27 3.86
101 103 3.716539 TAGGAGCACGCGCACATCC 62.717 63.158 5.73 9.23 42.27 3.51
102 104 2.202743 TAGGAGCACGCGCACATC 60.203 61.111 5.73 0.00 42.27 3.06
103 105 2.202797 CTAGGAGCACGCGCACAT 60.203 61.111 5.73 0.00 42.27 3.21
104 106 4.435436 CCTAGGAGCACGCGCACA 62.435 66.667 5.73 0.00 42.27 4.57
105 107 4.436998 ACCTAGGAGCACGCGCAC 62.437 66.667 17.98 0.00 42.27 5.34
106 108 4.129737 GACCTAGGAGCACGCGCA 62.130 66.667 17.98 0.00 42.27 6.09
108 110 3.736482 GACGACCTAGGAGCACGCG 62.736 68.421 17.98 3.53 0.00 6.01
109 111 2.102553 GACGACCTAGGAGCACGC 59.897 66.667 17.98 8.07 0.00 5.34
110 112 0.456221 ATTGACGACCTAGGAGCACG 59.544 55.000 17.98 16.64 0.00 5.34
111 113 2.673368 CAAATTGACGACCTAGGAGCAC 59.327 50.000 17.98 4.87 0.00 4.40
112 114 2.565391 TCAAATTGACGACCTAGGAGCA 59.435 45.455 17.98 8.59 0.00 4.26
113 115 2.930682 GTCAAATTGACGACCTAGGAGC 59.069 50.000 17.98 6.03 37.67 4.70
125 127 9.967451 TGACTTATATTAGGTTGGTCAAATTGA 57.033 29.630 0.00 0.00 30.81 2.57
180 182 9.965824 ACGATTTGAAAATAAAACATCTGAAGT 57.034 25.926 0.00 0.00 0.00 3.01
235 237 9.990868 AACCTAGATTACCAATTTTATCACCTT 57.009 29.630 0.00 0.00 0.00 3.50
239 241 9.048446 GCGTAACCTAGATTACCAATTTTATCA 57.952 33.333 1.17 0.00 32.36 2.15
240 242 8.219105 CGCGTAACCTAGATTACCAATTTTATC 58.781 37.037 1.17 0.00 32.36 1.75
241 243 7.712205 ACGCGTAACCTAGATTACCAATTTTAT 59.288 33.333 11.67 0.00 32.36 1.40
242 244 7.041107 ACGCGTAACCTAGATTACCAATTTTA 58.959 34.615 11.67 0.00 32.36 1.52
243 245 5.876460 ACGCGTAACCTAGATTACCAATTTT 59.124 36.000 11.67 0.00 32.36 1.82
244 246 5.422145 ACGCGTAACCTAGATTACCAATTT 58.578 37.500 11.67 0.00 32.36 1.82
245 247 5.014808 ACGCGTAACCTAGATTACCAATT 57.985 39.130 11.67 0.00 32.36 2.32
246 248 4.660789 ACGCGTAACCTAGATTACCAAT 57.339 40.909 11.67 0.00 32.36 3.16
247 249 4.036734 CCTACGCGTAACCTAGATTACCAA 59.963 45.833 20.97 0.00 32.36 3.67
248 250 3.565482 CCTACGCGTAACCTAGATTACCA 59.435 47.826 20.97 0.00 32.36 3.25
249 251 3.815401 TCCTACGCGTAACCTAGATTACC 59.185 47.826 20.97 0.00 32.36 2.85
250 252 4.513318 AGTCCTACGCGTAACCTAGATTAC 59.487 45.833 20.97 8.75 0.00 1.89
251 253 4.708177 AGTCCTACGCGTAACCTAGATTA 58.292 43.478 20.97 0.00 0.00 1.75
252 254 3.549794 AGTCCTACGCGTAACCTAGATT 58.450 45.455 20.97 6.31 0.00 2.40
253 255 3.205784 AGTCCTACGCGTAACCTAGAT 57.794 47.619 20.97 0.00 0.00 1.98
254 256 2.679837 CAAGTCCTACGCGTAACCTAGA 59.320 50.000 20.97 9.16 0.00 2.43
255 257 2.793933 GCAAGTCCTACGCGTAACCTAG 60.794 54.545 20.97 9.79 0.00 3.02
256 258 1.133025 GCAAGTCCTACGCGTAACCTA 59.867 52.381 20.97 0.00 0.00 3.08
257 259 0.108945 GCAAGTCCTACGCGTAACCT 60.109 55.000 20.97 12.66 0.00 3.50
258 260 0.388907 TGCAAGTCCTACGCGTAACC 60.389 55.000 20.97 10.56 0.00 2.85
259 261 1.421382 TTGCAAGTCCTACGCGTAAC 58.579 50.000 20.97 16.17 0.00 2.50
260 262 2.151881 TTTGCAAGTCCTACGCGTAA 57.848 45.000 20.97 3.09 0.00 3.18
261 263 1.794116 GTTTTGCAAGTCCTACGCGTA 59.206 47.619 19.40 19.40 0.00 4.42
262 264 0.584876 GTTTTGCAAGTCCTACGCGT 59.415 50.000 19.17 19.17 0.00 6.01
263 265 0.865769 AGTTTTGCAAGTCCTACGCG 59.134 50.000 3.53 3.53 0.00 6.01
264 266 1.871039 TCAGTTTTGCAAGTCCTACGC 59.129 47.619 0.00 0.00 0.00 4.42
265 267 4.279659 GTTTCAGTTTTGCAAGTCCTACG 58.720 43.478 0.00 0.00 0.00 3.51
266 268 4.279659 CGTTTCAGTTTTGCAAGTCCTAC 58.720 43.478 0.00 0.00 0.00 3.18
267 269 3.314080 CCGTTTCAGTTTTGCAAGTCCTA 59.686 43.478 0.00 0.00 0.00 2.94
268 270 2.099098 CCGTTTCAGTTTTGCAAGTCCT 59.901 45.455 0.00 0.00 0.00 3.85
269 271 2.098443 TCCGTTTCAGTTTTGCAAGTCC 59.902 45.455 0.00 0.00 0.00 3.85
270 272 3.363178 CTCCGTTTCAGTTTTGCAAGTC 58.637 45.455 0.00 0.00 0.00 3.01
271 273 2.099098 CCTCCGTTTCAGTTTTGCAAGT 59.901 45.455 0.00 0.00 0.00 3.16
272 274 2.099098 ACCTCCGTTTCAGTTTTGCAAG 59.901 45.455 0.00 0.00 0.00 4.01
273 275 2.096248 ACCTCCGTTTCAGTTTTGCAA 58.904 42.857 0.00 0.00 0.00 4.08
274 276 1.757682 ACCTCCGTTTCAGTTTTGCA 58.242 45.000 0.00 0.00 0.00 4.08
275 277 2.876550 ACTACCTCCGTTTCAGTTTTGC 59.123 45.455 0.00 0.00 0.00 3.68
276 278 4.450080 GGTACTACCTCCGTTTCAGTTTTG 59.550 45.833 0.00 0.00 34.73 2.44
277 279 4.635223 GGTACTACCTCCGTTTCAGTTTT 58.365 43.478 0.00 0.00 34.73 2.43
278 280 4.263018 GGTACTACCTCCGTTTCAGTTT 57.737 45.455 0.00 0.00 34.73 2.66
279 281 3.949842 GGTACTACCTCCGTTTCAGTT 57.050 47.619 0.00 0.00 34.73 3.16
288 290 7.687592 TGTTTGTTAACTTCAGGTACTACCTCC 60.688 40.741 4.60 0.00 39.80 4.30
289 291 7.170489 GTGTTTGTTAACTTCAGGTACTACCTC 59.830 40.741 4.60 0.00 39.80 3.85
290 292 6.988580 GTGTTTGTTAACTTCAGGTACTACCT 59.011 38.462 7.22 1.40 41.26 3.08
291 293 6.203530 GGTGTTTGTTAACTTCAGGTACTACC 59.796 42.308 7.22 0.00 35.31 3.18
292 294 6.988580 AGGTGTTTGTTAACTTCAGGTACTAC 59.011 38.462 7.22 0.00 33.57 2.73
293 295 7.128234 AGGTGTTTGTTAACTTCAGGTACTA 57.872 36.000 7.22 0.00 33.57 1.82
294 296 5.997843 AGGTGTTTGTTAACTTCAGGTACT 58.002 37.500 7.22 0.00 35.10 2.73
295 297 6.492254 CAAGGTGTTTGTTAACTTCAGGTAC 58.508 40.000 7.22 0.00 35.24 3.34
296 298 5.066764 GCAAGGTGTTTGTTAACTTCAGGTA 59.933 40.000 7.22 0.00 39.08 3.08
297 299 4.142249 GCAAGGTGTTTGTTAACTTCAGGT 60.142 41.667 7.22 0.00 39.08 4.00
298 300 4.142271 TGCAAGGTGTTTGTTAACTTCAGG 60.142 41.667 7.22 0.00 39.08 3.86
318 320 3.321968 AGGAGCGAGTATATGTTCATGCA 59.678 43.478 0.00 0.00 0.00 3.96
327 329 2.595238 ACCGGAAAGGAGCGAGTATAT 58.405 47.619 9.46 0.00 45.00 0.86
330 332 0.971386 AAACCGGAAAGGAGCGAGTA 59.029 50.000 9.46 0.00 45.00 2.59
331 333 0.971386 TAAACCGGAAAGGAGCGAGT 59.029 50.000 9.46 0.00 45.00 4.18
332 334 2.311124 ATAAACCGGAAAGGAGCGAG 57.689 50.000 9.46 0.00 45.00 5.03
333 335 3.025978 TCTATAAACCGGAAAGGAGCGA 58.974 45.455 9.46 0.00 45.00 4.93
334 336 3.381949 CTCTATAAACCGGAAAGGAGCG 58.618 50.000 9.46 0.00 45.00 5.03
335 337 3.132160 GCTCTATAAACCGGAAAGGAGC 58.868 50.000 9.46 14.92 45.00 4.70
336 338 4.674281 AGCTCTATAAACCGGAAAGGAG 57.326 45.455 9.46 8.87 45.00 3.69
337 339 6.553852 AGATAAGCTCTATAAACCGGAAAGGA 59.446 38.462 9.46 0.00 36.42 3.36
338 340 6.760291 AGATAAGCTCTATAAACCGGAAAGG 58.240 40.000 9.46 0.00 38.15 3.11
339 341 7.434492 TGAGATAAGCTCTATAAACCGGAAAG 58.566 38.462 9.46 0.00 44.27 2.62
340 342 7.356089 TGAGATAAGCTCTATAAACCGGAAA 57.644 36.000 9.46 0.00 44.27 3.13
341 343 6.971726 TGAGATAAGCTCTATAAACCGGAA 57.028 37.500 9.46 0.00 44.27 4.30
342 344 6.971726 TTGAGATAAGCTCTATAAACCGGA 57.028 37.500 9.46 0.00 44.27 5.14
343 345 8.608844 ATTTTGAGATAAGCTCTATAAACCGG 57.391 34.615 0.00 0.00 44.27 5.28
359 361 9.594478 AACGGAAACAACTAAAAATTTTGAGAT 57.406 25.926 20.29 7.22 0.00 2.75
360 362 8.989653 AACGGAAACAACTAAAAATTTTGAGA 57.010 26.923 20.29 1.88 0.00 3.27
367 369 9.471084 CCTCATAAAACGGAAACAACTAAAAAT 57.529 29.630 0.00 0.00 0.00 1.82
368 370 7.435784 GCCTCATAAAACGGAAACAACTAAAAA 59.564 33.333 0.00 0.00 0.00 1.94
369 371 6.919115 GCCTCATAAAACGGAAACAACTAAAA 59.081 34.615 0.00 0.00 0.00 1.52
370 372 6.263617 AGCCTCATAAAACGGAAACAACTAAA 59.736 34.615 0.00 0.00 0.00 1.85
371 373 5.766174 AGCCTCATAAAACGGAAACAACTAA 59.234 36.000 0.00 0.00 0.00 2.24
372 374 5.310451 AGCCTCATAAAACGGAAACAACTA 58.690 37.500 0.00 0.00 0.00 2.24
373 375 4.142038 AGCCTCATAAAACGGAAACAACT 58.858 39.130 0.00 0.00 0.00 3.16
374 376 4.499037 AGCCTCATAAAACGGAAACAAC 57.501 40.909 0.00 0.00 0.00 3.32
375 377 6.636562 TTAAGCCTCATAAAACGGAAACAA 57.363 33.333 0.00 0.00 0.00 2.83
376 378 6.827586 ATTAAGCCTCATAAAACGGAAACA 57.172 33.333 0.00 0.00 0.00 2.83
377 379 7.810759 TCAAATTAAGCCTCATAAAACGGAAAC 59.189 33.333 0.00 0.00 0.00 2.78
378 380 7.887381 TCAAATTAAGCCTCATAAAACGGAAA 58.113 30.769 0.00 0.00 0.00 3.13
379 381 7.455641 TCAAATTAAGCCTCATAAAACGGAA 57.544 32.000 0.00 0.00 0.00 4.30
380 382 7.639113 ATCAAATTAAGCCTCATAAAACGGA 57.361 32.000 0.00 0.00 0.00 4.69
381 383 7.759433 ACAATCAAATTAAGCCTCATAAAACGG 59.241 33.333 0.00 0.00 0.00 4.44
382 384 8.687824 ACAATCAAATTAAGCCTCATAAAACG 57.312 30.769 0.00 0.00 0.00 3.60
387 389 9.241919 TGAGAAACAATCAAATTAAGCCTCATA 57.758 29.630 0.00 0.00 0.00 2.15
388 390 8.125978 TGAGAAACAATCAAATTAAGCCTCAT 57.874 30.769 0.00 0.00 0.00 2.90
389 391 7.523293 TGAGAAACAATCAAATTAAGCCTCA 57.477 32.000 0.00 0.00 0.00 3.86
390 392 8.246180 TGATGAGAAACAATCAAATTAAGCCTC 58.754 33.333 0.00 0.00 0.00 4.70
391 393 8.031277 GTGATGAGAAACAATCAAATTAAGCCT 58.969 33.333 0.00 0.00 0.00 4.58
392 394 7.814107 TGTGATGAGAAACAATCAAATTAAGCC 59.186 33.333 0.00 0.00 0.00 4.35
393 395 8.746922 TGTGATGAGAAACAATCAAATTAAGC 57.253 30.769 0.00 0.00 0.00 3.09
397 399 9.199982 GAACATGTGATGAGAAACAATCAAATT 57.800 29.630 0.00 0.00 0.00 1.82
398 400 8.361889 TGAACATGTGATGAGAAACAATCAAAT 58.638 29.630 0.00 0.00 0.00 2.32
399 401 7.714703 TGAACATGTGATGAGAAACAATCAAA 58.285 30.769 0.00 0.00 0.00 2.69
400 402 7.274603 TGAACATGTGATGAGAAACAATCAA 57.725 32.000 0.00 0.00 0.00 2.57
401 403 6.880942 TGAACATGTGATGAGAAACAATCA 57.119 33.333 0.00 0.00 0.00 2.57
402 404 8.752766 ATTTGAACATGTGATGAGAAACAATC 57.247 30.769 0.00 0.00 0.00 2.67
403 405 9.199982 GAATTTGAACATGTGATGAGAAACAAT 57.800 29.630 0.00 0.00 0.00 2.71
404 406 7.652909 GGAATTTGAACATGTGATGAGAAACAA 59.347 33.333 0.00 0.00 0.00 2.83
405 407 7.147312 GGAATTTGAACATGTGATGAGAAACA 58.853 34.615 0.00 0.00 0.00 2.83
406 408 7.147312 TGGAATTTGAACATGTGATGAGAAAC 58.853 34.615 0.00 0.00 0.00 2.78
407 409 7.287512 TGGAATTTGAACATGTGATGAGAAA 57.712 32.000 0.00 0.00 0.00 2.52
408 410 6.897706 TGGAATTTGAACATGTGATGAGAA 57.102 33.333 0.00 0.00 0.00 2.87
409 411 6.071784 CCTTGGAATTTGAACATGTGATGAGA 60.072 38.462 0.00 0.00 0.00 3.27
410 412 6.097356 CCTTGGAATTTGAACATGTGATGAG 58.903 40.000 0.00 0.00 0.00 2.90
411 413 5.539574 ACCTTGGAATTTGAACATGTGATGA 59.460 36.000 0.00 0.00 0.00 2.92
412 414 5.636121 CACCTTGGAATTTGAACATGTGATG 59.364 40.000 0.00 0.00 0.00 3.07
413 415 5.786311 CACCTTGGAATTTGAACATGTGAT 58.214 37.500 0.00 0.00 0.00 3.06
414 416 4.501229 GCACCTTGGAATTTGAACATGTGA 60.501 41.667 0.00 0.00 0.00 3.58
415 417 3.742369 GCACCTTGGAATTTGAACATGTG 59.258 43.478 0.00 0.00 0.00 3.21
416 418 3.387374 TGCACCTTGGAATTTGAACATGT 59.613 39.130 0.00 0.00 0.00 3.21
417 419 3.992643 TGCACCTTGGAATTTGAACATG 58.007 40.909 0.00 0.00 0.00 3.21
418 420 4.895668 ATGCACCTTGGAATTTGAACAT 57.104 36.364 0.00 0.00 0.00 2.71
419 421 4.686191 AATGCACCTTGGAATTTGAACA 57.314 36.364 0.00 0.00 0.00 3.18
420 422 7.387397 TGATTTAATGCACCTTGGAATTTGAAC 59.613 33.333 0.00 0.00 0.00 3.18
421 423 7.448420 TGATTTAATGCACCTTGGAATTTGAA 58.552 30.769 0.00 0.00 0.00 2.69
422 424 7.002250 TGATTTAATGCACCTTGGAATTTGA 57.998 32.000 0.00 0.00 0.00 2.69
423 425 7.852971 ATGATTTAATGCACCTTGGAATTTG 57.147 32.000 0.00 0.00 0.00 2.32
424 426 7.148205 GCAATGATTTAATGCACCTTGGAATTT 60.148 33.333 0.00 0.00 39.81 1.82
425 427 6.316890 GCAATGATTTAATGCACCTTGGAATT 59.683 34.615 0.00 0.00 39.81 2.17
426 428 5.818857 GCAATGATTTAATGCACCTTGGAAT 59.181 36.000 0.00 0.00 39.81 3.01
427 429 5.177326 GCAATGATTTAATGCACCTTGGAA 58.823 37.500 0.00 0.00 39.81 3.53
428 430 4.222366 TGCAATGATTTAATGCACCTTGGA 59.778 37.500 0.00 0.00 44.52 3.53
429 431 4.505808 TGCAATGATTTAATGCACCTTGG 58.494 39.130 0.00 0.00 44.52 3.61
446 448 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
447 449 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
448 450 8.522003 TCAATTTTCTCTTAATACTTGCATGCA 58.478 29.630 18.46 18.46 0.00 3.96
449 451 8.801913 GTCAATTTTCTCTTAATACTTGCATGC 58.198 33.333 11.82 11.82 0.00 4.06
450 452 9.003112 CGTCAATTTTCTCTTAATACTTGCATG 57.997 33.333 0.00 0.00 0.00 4.06
451 453 8.946085 TCGTCAATTTTCTCTTAATACTTGCAT 58.054 29.630 0.00 0.00 0.00 3.96
452 454 8.317891 TCGTCAATTTTCTCTTAATACTTGCA 57.682 30.769 0.00 0.00 0.00 4.08
453 455 9.774742 ATTCGTCAATTTTCTCTTAATACTTGC 57.225 29.630 0.00 0.00 0.00 4.01
455 457 9.774742 GCATTCGTCAATTTTCTCTTAATACTT 57.225 29.630 0.00 0.00 0.00 2.24
456 458 8.946085 TGCATTCGTCAATTTTCTCTTAATACT 58.054 29.630 0.00 0.00 0.00 2.12
457 459 9.722056 ATGCATTCGTCAATTTTCTCTTAATAC 57.278 29.630 0.00 0.00 0.00 1.89
458 460 9.720667 CATGCATTCGTCAATTTTCTCTTAATA 57.279 29.630 0.00 0.00 0.00 0.98
459 461 8.246180 ACATGCATTCGTCAATTTTCTCTTAAT 58.754 29.630 0.00 0.00 0.00 1.40
460 462 7.592938 ACATGCATTCGTCAATTTTCTCTTAA 58.407 30.769 0.00 0.00 0.00 1.85
461 463 7.144722 ACATGCATTCGTCAATTTTCTCTTA 57.855 32.000 0.00 0.00 0.00 2.10
462 464 6.017400 ACATGCATTCGTCAATTTTCTCTT 57.983 33.333 0.00 0.00 0.00 2.85
463 465 5.633830 ACATGCATTCGTCAATTTTCTCT 57.366 34.783 0.00 0.00 0.00 3.10
464 466 6.546395 AGTACATGCATTCGTCAATTTTCTC 58.454 36.000 0.00 0.00 0.00 2.87
465 467 6.500684 AGTACATGCATTCGTCAATTTTCT 57.499 33.333 0.00 0.00 0.00 2.52
466 468 7.566858 AAAGTACATGCATTCGTCAATTTTC 57.433 32.000 0.00 0.00 0.00 2.29
467 469 9.075519 CATAAAGTACATGCATTCGTCAATTTT 57.924 29.630 0.00 0.00 0.00 1.82
468 470 7.220683 GCATAAAGTACATGCATTCGTCAATTT 59.779 33.333 10.82 0.00 46.47 1.82
469 471 6.692681 GCATAAAGTACATGCATTCGTCAATT 59.307 34.615 10.82 0.00 46.47 2.32
470 472 6.201517 GCATAAAGTACATGCATTCGTCAAT 58.798 36.000 10.82 0.00 46.47 2.57
471 473 5.568482 GCATAAAGTACATGCATTCGTCAA 58.432 37.500 10.82 0.00 46.47 3.18
472 474 5.155509 GCATAAAGTACATGCATTCGTCA 57.844 39.130 10.82 0.00 46.47 4.35
498 500 7.485418 ACCAATGTATTAATTGCAATGCATG 57.515 32.000 13.82 0.00 39.41 4.06
499 501 9.610705 TTTACCAATGTATTAATTGCAATGCAT 57.389 25.926 13.82 10.48 41.27 3.96
500 502 8.877779 GTTTACCAATGTATTAATTGCAATGCA 58.122 29.630 13.82 2.72 36.42 3.96
501 503 8.877779 TGTTTACCAATGTATTAATTGCAATGC 58.122 29.630 13.82 0.00 36.42 3.56
535 537 9.898152 ACCCAATTAATCTTTTGTTTTTCTCAA 57.102 25.926 0.00 0.00 0.00 3.02
536 538 9.323985 CACCCAATTAATCTTTTGTTTTTCTCA 57.676 29.630 0.00 0.00 0.00 3.27
537 539 8.282592 GCACCCAATTAATCTTTTGTTTTTCTC 58.717 33.333 0.00 0.00 0.00 2.87
538 540 7.992608 AGCACCCAATTAATCTTTTGTTTTTCT 59.007 29.630 0.00 0.00 0.00 2.52
539 541 8.153479 AGCACCCAATTAATCTTTTGTTTTTC 57.847 30.769 0.00 0.00 0.00 2.29
540 542 8.518430 AAGCACCCAATTAATCTTTTGTTTTT 57.482 26.923 0.00 0.00 0.00 1.94
541 543 8.518430 AAAGCACCCAATTAATCTTTTGTTTT 57.482 26.923 0.00 0.00 0.00 2.43
542 544 8.404765 CAAAAGCACCCAATTAATCTTTTGTTT 58.595 29.630 19.69 6.53 42.17 2.83
543 545 7.468494 GCAAAAGCACCCAATTAATCTTTTGTT 60.468 33.333 24.21 5.62 45.65 2.83
544 546 6.017192 GCAAAAGCACCCAATTAATCTTTTGT 60.017 34.615 24.21 5.48 45.65 2.83
545 547 6.017275 TGCAAAAGCACCCAATTAATCTTTTG 60.017 34.615 21.79 21.79 46.17 2.44
546 548 6.060788 TGCAAAAGCACCCAATTAATCTTTT 58.939 32.000 5.08 5.08 35.06 2.27
547 549 5.619220 TGCAAAAGCACCCAATTAATCTTT 58.381 33.333 0.00 0.00 0.00 2.52
548 550 5.226194 TGCAAAAGCACCCAATTAATCTT 57.774 34.783 0.00 0.00 0.00 2.40
549 551 4.888326 TGCAAAAGCACCCAATTAATCT 57.112 36.364 0.00 0.00 0.00 2.40
550 552 5.469760 AGTTTGCAAAAGCACCCAATTAATC 59.530 36.000 14.67 0.00 0.00 1.75
551 553 5.375773 AGTTTGCAAAAGCACCCAATTAAT 58.624 33.333 14.67 0.00 0.00 1.40
552 554 4.775236 AGTTTGCAAAAGCACCCAATTAA 58.225 34.783 14.67 0.00 0.00 1.40
553 555 4.414337 AGTTTGCAAAAGCACCCAATTA 57.586 36.364 14.67 0.00 0.00 1.40
554 556 3.280197 AGTTTGCAAAAGCACCCAATT 57.720 38.095 14.67 0.00 0.00 2.32
555 557 3.133721 TGTAGTTTGCAAAAGCACCCAAT 59.866 39.130 14.67 0.00 0.00 3.16
556 558 2.497675 TGTAGTTTGCAAAAGCACCCAA 59.502 40.909 14.67 0.00 0.00 4.12
557 559 2.103373 TGTAGTTTGCAAAAGCACCCA 58.897 42.857 14.67 2.54 0.00 4.51
558 560 2.880963 TGTAGTTTGCAAAAGCACCC 57.119 45.000 14.67 0.00 0.00 4.61
559 561 5.121611 ACTTTTTGTAGTTTGCAAAAGCACC 59.878 36.000 14.67 0.55 43.70 5.01
560 562 6.164408 ACTTTTTGTAGTTTGCAAAAGCAC 57.836 33.333 14.67 12.12 43.70 4.40
561 563 8.485976 AATACTTTTTGTAGTTTGCAAAAGCA 57.514 26.923 14.67 10.19 43.70 3.91
562 564 8.061857 GGAATACTTTTTGTAGTTTGCAAAAGC 58.938 33.333 14.67 7.63 43.70 3.51
563 565 9.092876 TGGAATACTTTTTGTAGTTTGCAAAAG 57.907 29.630 14.67 7.55 43.70 2.27
564 566 8.874816 GTGGAATACTTTTTGTAGTTTGCAAAA 58.125 29.630 14.67 0.00 42.03 2.44
565 567 7.492994 GGTGGAATACTTTTTGTAGTTTGCAAA 59.507 33.333 8.05 8.05 34.24 3.68
566 568 6.981559 GGTGGAATACTTTTTGTAGTTTGCAA 59.018 34.615 0.00 0.00 34.24 4.08
567 569 6.096987 TGGTGGAATACTTTTTGTAGTTTGCA 59.903 34.615 0.00 0.00 34.24 4.08
568 570 6.419710 GTGGTGGAATACTTTTTGTAGTTTGC 59.580 38.462 0.00 0.00 34.24 3.68
569 571 7.712797 AGTGGTGGAATACTTTTTGTAGTTTG 58.287 34.615 0.00 0.00 34.24 2.93
570 572 7.558444 TGAGTGGTGGAATACTTTTTGTAGTTT 59.442 33.333 0.00 0.00 34.24 2.66
571 573 7.057894 TGAGTGGTGGAATACTTTTTGTAGTT 58.942 34.615 0.00 0.00 34.24 2.24
572 574 6.597562 TGAGTGGTGGAATACTTTTTGTAGT 58.402 36.000 0.00 0.00 34.24 2.73
573 575 7.390440 TGATGAGTGGTGGAATACTTTTTGTAG 59.610 37.037 0.00 0.00 34.24 2.74
574 576 7.227873 TGATGAGTGGTGGAATACTTTTTGTA 58.772 34.615 0.00 0.00 35.37 2.41
575 577 6.068010 TGATGAGTGGTGGAATACTTTTTGT 58.932 36.000 0.00 0.00 0.00 2.83
576 578 6.573664 TGATGAGTGGTGGAATACTTTTTG 57.426 37.500 0.00 0.00 0.00 2.44
577 579 7.177878 AGATGATGAGTGGTGGAATACTTTTT 58.822 34.615 0.00 0.00 0.00 1.94
578 580 6.725364 AGATGATGAGTGGTGGAATACTTTT 58.275 36.000 0.00 0.00 0.00 2.27
579 581 6.319048 AGATGATGAGTGGTGGAATACTTT 57.681 37.500 0.00 0.00 0.00 2.66
580 582 5.965033 AGATGATGAGTGGTGGAATACTT 57.035 39.130 0.00 0.00 0.00 2.24
581 583 5.305644 GGTAGATGATGAGTGGTGGAATACT 59.694 44.000 0.00 0.00 0.00 2.12
582 584 5.305644 AGGTAGATGATGAGTGGTGGAATAC 59.694 44.000 0.00 0.00 0.00 1.89
583 585 5.467738 AGGTAGATGATGAGTGGTGGAATA 58.532 41.667 0.00 0.00 0.00 1.75
584 586 4.302067 AGGTAGATGATGAGTGGTGGAAT 58.698 43.478 0.00 0.00 0.00 3.01
585 587 3.724478 AGGTAGATGATGAGTGGTGGAA 58.276 45.455 0.00 0.00 0.00 3.53
586 588 3.404869 AGGTAGATGATGAGTGGTGGA 57.595 47.619 0.00 0.00 0.00 4.02
587 589 3.432749 CCAAGGTAGATGATGAGTGGTGG 60.433 52.174 0.00 0.00 0.00 4.61
588 590 3.198635 ACCAAGGTAGATGATGAGTGGTG 59.801 47.826 0.00 0.00 36.77 4.17
589 591 3.454858 ACCAAGGTAGATGATGAGTGGT 58.545 45.455 0.00 0.00 33.31 4.16
590 592 4.194640 CAACCAAGGTAGATGATGAGTGG 58.805 47.826 0.00 0.00 0.00 4.00
591 593 4.194640 CCAACCAAGGTAGATGATGAGTG 58.805 47.826 0.00 0.00 0.00 3.51
592 594 3.846588 ACCAACCAAGGTAGATGATGAGT 59.153 43.478 0.00 0.00 40.98 3.41
593 595 4.080919 TCACCAACCAAGGTAGATGATGAG 60.081 45.833 0.00 0.00 40.77 2.90
594 596 3.843619 TCACCAACCAAGGTAGATGATGA 59.156 43.478 0.00 0.00 40.77 2.92
595 597 4.080919 TCTCACCAACCAAGGTAGATGATG 60.081 45.833 0.00 0.00 40.77 3.07
596 598 4.104086 TCTCACCAACCAAGGTAGATGAT 58.896 43.478 0.00 0.00 40.77 2.45
597 599 3.516586 TCTCACCAACCAAGGTAGATGA 58.483 45.455 0.00 0.00 40.77 2.92
598 600 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
599 601 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
600 602 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
601 603 5.534654 TCAAAAATCTCACCAACCAAGGTAG 59.465 40.000 0.00 0.00 40.77 3.18
602 604 5.450453 TCAAAAATCTCACCAACCAAGGTA 58.550 37.500 0.00 0.00 40.77 3.08
603 605 4.285863 TCAAAAATCTCACCAACCAAGGT 58.714 39.130 0.00 0.00 44.48 3.50
604 606 4.935352 TCAAAAATCTCACCAACCAAGG 57.065 40.909 0.00 0.00 0.00 3.61
605 607 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
606 608 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
607 609 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
608 610 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
609 611 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
610 612 5.305128 AGGCTCAATTCAAAAATCTCACCAA 59.695 36.000 0.00 0.00 0.00 3.67
611 613 4.834496 AGGCTCAATTCAAAAATCTCACCA 59.166 37.500 0.00 0.00 0.00 4.17
612 614 5.397142 AGGCTCAATTCAAAAATCTCACC 57.603 39.130 0.00 0.00 0.00 4.02
622 624 9.912634 CTTTTCAGTTTATAAGGCTCAATTCAA 57.087 29.630 0.00 0.00 0.00 2.69
623 625 8.522830 CCTTTTCAGTTTATAAGGCTCAATTCA 58.477 33.333 0.00 0.00 31.59 2.57
624 626 8.739972 TCCTTTTCAGTTTATAAGGCTCAATTC 58.260 33.333 0.00 0.00 37.62 2.17
625 627 8.650143 TCCTTTTCAGTTTATAAGGCTCAATT 57.350 30.769 0.00 0.00 37.62 2.32
626 628 7.340487 CCTCCTTTTCAGTTTATAAGGCTCAAT 59.660 37.037 0.00 0.00 37.62 2.57
627 629 6.659242 CCTCCTTTTCAGTTTATAAGGCTCAA 59.341 38.462 0.00 0.00 37.62 3.02
628 630 6.180472 CCTCCTTTTCAGTTTATAAGGCTCA 58.820 40.000 0.00 0.00 37.62 4.26
629 631 5.590663 CCCTCCTTTTCAGTTTATAAGGCTC 59.409 44.000 0.00 0.00 37.62 4.70
630 632 5.253096 TCCCTCCTTTTCAGTTTATAAGGCT 59.747 40.000 0.00 0.00 37.62 4.58
631 633 5.506708 TCCCTCCTTTTCAGTTTATAAGGC 58.493 41.667 0.00 0.00 37.62 4.35
632 634 6.722328 ACTCCCTCCTTTTCAGTTTATAAGG 58.278 40.000 0.00 0.00 38.78 2.69
635 637 9.496710 TGTATACTCCCTCCTTTTCAGTTTATA 57.503 33.333 4.17 0.00 0.00 0.98
636 638 8.388656 TGTATACTCCCTCCTTTTCAGTTTAT 57.611 34.615 4.17 0.00 0.00 1.40
637 639 7.801893 TGTATACTCCCTCCTTTTCAGTTTA 57.198 36.000 4.17 0.00 0.00 2.01
638 640 6.697641 TGTATACTCCCTCCTTTTCAGTTT 57.302 37.500 4.17 0.00 0.00 2.66
639 641 6.443849 TGATGTATACTCCCTCCTTTTCAGTT 59.556 38.462 4.17 0.00 0.00 3.16
640 642 5.964477 TGATGTATACTCCCTCCTTTTCAGT 59.036 40.000 4.17 0.00 0.00 3.41
641 643 6.325028 TCTGATGTATACTCCCTCCTTTTCAG 59.675 42.308 4.17 0.00 0.00 3.02
642 644 6.202331 TCTGATGTATACTCCCTCCTTTTCA 58.798 40.000 4.17 0.00 0.00 2.69
643 645 6.551601 TCTCTGATGTATACTCCCTCCTTTTC 59.448 42.308 4.17 0.00 0.00 2.29
644 646 6.444704 TCTCTGATGTATACTCCCTCCTTTT 58.555 40.000 4.17 0.00 0.00 2.27
645 647 6.031964 TCTCTGATGTATACTCCCTCCTTT 57.968 41.667 4.17 0.00 0.00 3.11
646 648 5.671463 TCTCTGATGTATACTCCCTCCTT 57.329 43.478 4.17 0.00 0.00 3.36
647 649 5.876691 ATCTCTGATGTATACTCCCTCCT 57.123 43.478 4.17 0.00 0.00 3.69
648 650 6.926630 AAATCTCTGATGTATACTCCCTCC 57.073 41.667 4.17 0.00 0.00 4.30
649 651 8.189119 AGAAAATCTCTGATGTATACTCCCTC 57.811 38.462 4.17 0.00 31.12 4.30
650 652 8.560124 AAGAAAATCTCTGATGTATACTCCCT 57.440 34.615 4.17 0.00 33.37 4.20
651 653 8.646900 AGAAGAAAATCTCTGATGTATACTCCC 58.353 37.037 4.17 0.00 33.37 4.30
652 654 9.691362 GAGAAGAAAATCTCTGATGTATACTCC 57.309 37.037 4.17 0.00 42.12 3.85
682 686 6.374894 CCATGGCCATTTGTTGTTTATCATTT 59.625 34.615 17.92 0.00 0.00 2.32
743 747 9.660180 ACTAATAGAAAAAGACTCCATCTCAAC 57.340 33.333 0.00 0.00 36.27 3.18
767 771 5.938125 ACACGCTTCTGGTCATATTAAAACT 59.062 36.000 0.00 0.00 0.00 2.66
821 833 6.855914 CACACGACACAATAAGCACTTTTAAT 59.144 34.615 0.00 0.00 0.00 1.40
870 882 1.589803 GTCAACCCAACTGTAGCGTT 58.410 50.000 0.00 0.00 0.00 4.84
1842 1854 5.934625 AGTAAATCTGTTTTGTGCGAGAGAT 59.065 36.000 0.00 0.00 0.00 2.75
1872 1884 5.818857 GCATGATGCAATACCTTTTGGAAAT 59.181 36.000 13.36 0.00 44.26 2.17
2425 2437 7.126421 AGTGAGTTGGTTGTATCCAAGATCTAT 59.874 37.037 0.00 0.00 46.35 1.98
2483 2495 6.593382 AGAGATATCAAGCAACACAAGAGTTC 59.407 38.462 5.32 0.00 0.00 3.01
2527 2539 5.626578 GCATACCCATTTTTGTTGGCATAGT 60.627 40.000 0.00 0.00 32.60 2.12
2736 2748 0.963962 CATTTGGCAGAGCACCAACT 59.036 50.000 0.00 0.00 46.66 3.16
2925 2937 6.874278 TTGTTGGAGGAGAGATCTAATGAA 57.126 37.500 0.00 0.00 0.00 2.57
3088 3100 1.228154 GAGAACCACAAAGCCCGGT 60.228 57.895 0.00 0.00 33.32 5.28
3090 3102 0.310854 GTTGAGAACCACAAAGCCCG 59.689 55.000 0.00 0.00 0.00 6.13
3158 3170 5.940470 GCTGGGAGTAGAAATTTGAGAAGAA 59.060 40.000 0.00 0.00 0.00 2.52
3297 3315 0.623723 GGGCAAGGTCATGGTAGGAA 59.376 55.000 0.00 0.00 0.00 3.36
3312 3330 2.497792 AATTCCGAGTGGCATGGGCA 62.498 55.000 0.00 0.00 43.71 5.36
3655 3673 4.608269 TGGTGGAGATAATTGATTGCCAA 58.392 39.130 0.00 0.00 39.41 4.52
4128 4146 0.674581 CAAGTCGCAGATGGAAGGCA 60.675 55.000 0.00 0.00 40.67 4.75
4192 4210 1.083489 CGTTTGGCGAATGGCTAGAA 58.917 50.000 0.00 0.00 44.77 2.10
4311 4329 4.202253 ACAAGACAGATACACAAGTGCAGA 60.202 41.667 0.00 0.00 0.00 4.26
4374 4392 1.159285 CAACATCCACACGTGCAGAT 58.841 50.000 17.22 15.06 0.00 2.90
4375 4393 0.179059 ACAACATCCACACGTGCAGA 60.179 50.000 17.22 13.22 0.00 4.26
4378 4396 0.380378 ACAACAACATCCACACGTGC 59.620 50.000 17.22 0.00 0.00 5.34
4379 4397 2.159448 ACAACAACAACATCCACACGTG 60.159 45.455 15.48 15.48 0.00 4.49
4380 4398 2.088423 ACAACAACAACATCCACACGT 58.912 42.857 0.00 0.00 0.00 4.49
4381 4399 2.842208 ACAACAACAACATCCACACG 57.158 45.000 0.00 0.00 0.00 4.49
4382 4400 3.843999 ACAACAACAACAACATCCACAC 58.156 40.909 0.00 0.00 0.00 3.82
4383 4401 4.240888 CAACAACAACAACAACATCCACA 58.759 39.130 0.00 0.00 0.00 4.17
4384 4402 4.241681 ACAACAACAACAACAACATCCAC 58.758 39.130 0.00 0.00 0.00 4.02
4386 4404 5.167845 AGAACAACAACAACAACAACATCC 58.832 37.500 0.00 0.00 0.00 3.51
4408 4502 4.324402 GCACACAACAAGAACAAGAACAAG 59.676 41.667 0.00 0.00 0.00 3.16
4414 4508 4.614555 TGTAGCACACAACAAGAACAAG 57.385 40.909 0.00 0.00 32.95 3.16
4595 4753 7.287696 AGGACCATGAAAGTTTTTCATACAAGT 59.712 33.333 14.61 10.67 37.06 3.16
4684 4842 0.608035 GTTGCCGATCCAAACCCAGA 60.608 55.000 0.00 0.00 0.00 3.86
4722 4880 1.202568 CCTATGAAGACGAGCCATGCA 60.203 52.381 0.00 0.00 0.00 3.96
4739 4897 1.518325 CCAATGCACGTGTTGACCTA 58.482 50.000 18.38 0.00 0.00 3.08
4867 5026 1.153127 TTTGACCGCGTTTGAGGGT 60.153 52.632 4.92 0.00 39.76 4.34
4881 5040 9.689501 TCTTTTAGAGGGTTTTTCTTACTTTGA 57.310 29.630 0.00 0.00 0.00 2.69
5100 9511 2.289195 CGCCAACAAGGGTGTTCTAGTA 60.289 50.000 0.00 0.00 45.00 1.82
5154 9565 6.395629 CCCGGTGTGAGATATCGTATTATTT 58.604 40.000 0.00 0.00 0.00 1.40
5161 9572 0.755698 AGCCCGGTGTGAGATATCGT 60.756 55.000 0.00 0.00 0.00 3.73
5225 9636 5.420409 GTTTACCGAGATGTCTGGAATTCT 58.580 41.667 5.23 0.00 0.00 2.40
5243 9654 8.760103 TTTGGTTTAGACTGTTTTTGGTTTAC 57.240 30.769 0.00 0.00 0.00 2.01
5249 9661 9.023967 CATCTTCTTTGGTTTAGACTGTTTTTG 57.976 33.333 0.00 0.00 0.00 2.44
5272 9684 5.036117 TCCCTTGGTTACATAAGAGCATC 57.964 43.478 1.14 0.00 0.00 3.91
5273 9685 5.450818 TTCCCTTGGTTACATAAGAGCAT 57.549 39.130 1.14 0.00 0.00 3.79
5274 9686 4.919774 TTCCCTTGGTTACATAAGAGCA 57.080 40.909 1.14 0.00 0.00 4.26
5275 9687 4.640647 CCTTTCCCTTGGTTACATAAGAGC 59.359 45.833 1.14 0.00 0.00 4.09
5276 9688 5.880887 GTCCTTTCCCTTGGTTACATAAGAG 59.119 44.000 1.14 0.00 0.00 2.85
5277 9689 5.550403 AGTCCTTTCCCTTGGTTACATAAGA 59.450 40.000 1.14 0.00 0.00 2.10
5278 9690 5.648092 CAGTCCTTTCCCTTGGTTACATAAG 59.352 44.000 0.00 0.00 0.00 1.73
5279 9691 5.311121 TCAGTCCTTTCCCTTGGTTACATAA 59.689 40.000 0.00 0.00 0.00 1.90
5280 9692 4.847512 TCAGTCCTTTCCCTTGGTTACATA 59.152 41.667 0.00 0.00 0.00 2.29
5281 9693 3.655777 TCAGTCCTTTCCCTTGGTTACAT 59.344 43.478 0.00 0.00 0.00 2.29
5282 9694 3.050089 TCAGTCCTTTCCCTTGGTTACA 58.950 45.455 0.00 0.00 0.00 2.41
5283 9695 3.072622 AGTCAGTCCTTTCCCTTGGTTAC 59.927 47.826 0.00 0.00 0.00 2.50
5284 9696 3.323775 AGTCAGTCCTTTCCCTTGGTTA 58.676 45.455 0.00 0.00 0.00 2.85
5285 9697 2.136026 AGTCAGTCCTTTCCCTTGGTT 58.864 47.619 0.00 0.00 0.00 3.67
5286 9698 1.821088 AGTCAGTCCTTTCCCTTGGT 58.179 50.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.