Multiple sequence alignment - TraesCS1A01G418500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G418500 chr1A 100.000 3944 0 0 1 3944 575797303 575801246 0.000000e+00 7284.0
1 TraesCS1A01G418500 chr1A 84.026 313 39 9 65 372 537067409 537067103 1.390000e-74 291.0
2 TraesCS1A01G418500 chr1A 100.000 39 0 0 3808 3846 251593610 251593572 5.470000e-09 73.1
3 TraesCS1A01G418500 chr1D 92.628 2618 124 24 475 3041 479536796 479539395 0.000000e+00 3701.0
4 TraesCS1A01G418500 chr1D 96.353 329 12 0 3040 3368 207149175 207148847 3.470000e-150 542.0
5 TraesCS1A01G418500 chr1D 96.512 86 3 0 3847 3932 207147888 207147803 4.110000e-30 143.0
6 TraesCS1A01G418500 chr1D 98.333 60 1 0 431 490 479535676 479535735 5.390000e-19 106.0
7 TraesCS1A01G418500 chr1D 100.000 39 0 0 3808 3846 350600699 350600661 5.470000e-09 73.1
8 TraesCS1A01G418500 chr1D 100.000 39 0 0 3808 3846 439576104 439576142 5.470000e-09 73.1
9 TraesCS1A01G418500 chr1D 100.000 39 0 0 3808 3846 488141099 488141061 5.470000e-09 73.1
10 TraesCS1A01G418500 chr1B 92.139 2595 112 30 478 3040 667737467 667740001 0.000000e+00 3578.0
11 TraesCS1A01G418500 chr1B 95.690 348 15 0 3040 3387 29773293 29772946 9.570000e-156 560.0
12 TraesCS1A01G418500 chr3B 95.536 896 40 0 3037 3932 804980651 804981546 0.000000e+00 1434.0
13 TraesCS1A01G418500 chr6A 93.157 906 29 13 3040 3944 98653443 98652570 0.000000e+00 1299.0
14 TraesCS1A01G418500 chr7A 96.193 683 18 1 3262 3944 703081192 703080518 0.000000e+00 1110.0
15 TraesCS1A01G418500 chr7A 86.175 434 29 15 3385 3817 23003651 23004054 1.300000e-119 440.0
16 TraesCS1A01G418500 chr2D 95.620 548 23 1 3040 3586 427945995 427946542 0.000000e+00 878.0
17 TraesCS1A01G418500 chr2D 98.000 100 2 0 3831 3930 427946970 427947069 1.460000e-39 174.0
18 TraesCS1A01G418500 chr2A 87.255 612 37 19 3040 3646 108518043 108517468 0.000000e+00 660.0
19 TraesCS1A01G418500 chr2A 84.967 306 32 12 73 372 622700163 622699866 8.290000e-77 298.0
20 TraesCS1A01G418500 chr2A 84.466 309 36 10 69 372 434580264 434579963 1.070000e-75 294.0
21 TraesCS1A01G418500 chr2A 96.040 101 4 0 3832 3932 108516575 108516475 8.770000e-37 165.0
22 TraesCS1A01G418500 chr2B 95.989 349 14 0 3039 3387 10611904 10611556 5.720000e-158 568.0
23 TraesCS1A01G418500 chr2B 84.416 308 37 9 69 372 132133881 132134181 3.850000e-75 292.0
24 TraesCS1A01G418500 chr5A 94.886 352 16 2 3040 3391 84396028 84396377 2.070000e-152 549.0
25 TraesCS1A01G418500 chr5A 84.244 311 34 13 69 372 524008682 524008380 4.990000e-74 289.0
26 TraesCS1A01G418500 chr6D 96.353 329 12 0 3040 3368 76080875 76080547 3.470000e-150 542.0
27 TraesCS1A01G418500 chr6D 83.974 312 39 10 69 377 468068513 468068816 4.990000e-74 289.0
28 TraesCS1A01G418500 chr6D 96.512 86 3 0 3847 3932 76079591 76079506 4.110000e-30 143.0
29 TraesCS1A01G418500 chr6D 100.000 39 0 0 3808 3846 447018168 447018130 5.470000e-09 73.1
30 TraesCS1A01G418500 chr6B 94.540 348 19 0 3040 3387 38067348 38067695 4.480000e-149 538.0
31 TraesCS1A01G418500 chr4A 94.034 352 21 0 3036 3387 153784650 153785001 5.800000e-148 534.0
32 TraesCS1A01G418500 chr4A 84.142 309 37 10 69 372 714826218 714825917 4.990000e-74 289.0
33 TraesCS1A01G418500 chr5B 88.657 432 37 9 3387 3817 660199170 660199590 2.100000e-142 516.0
34 TraesCS1A01G418500 chr5B 84.244 311 35 12 68 372 8364005 8364307 1.390000e-74 291.0
35 TraesCS1A01G418500 chr7B 84.142 309 38 8 69 373 727386783 727387084 4.990000e-74 289.0
36 TraesCS1A01G418500 chr3D 96.512 86 3 0 3847 3932 382821056 382821141 4.110000e-30 143.0
37 TraesCS1A01G418500 chr3D 96.512 86 3 0 3847 3932 554659551 554659636 4.110000e-30 143.0
38 TraesCS1A01G418500 chr3D 90.385 52 3 2 3808 3858 576691804 576691754 2.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G418500 chr1A 575797303 575801246 3943 False 7284.0 7284 100.0000 1 3944 1 chr1A.!!$F1 3943
1 TraesCS1A01G418500 chr1D 479535676 479539395 3719 False 1903.5 3701 95.4805 431 3041 2 chr1D.!!$F2 2610
2 TraesCS1A01G418500 chr1D 207147803 207149175 1372 True 342.5 542 96.4325 3040 3932 2 chr1D.!!$R3 892
3 TraesCS1A01G418500 chr1B 667737467 667740001 2534 False 3578.0 3578 92.1390 478 3040 1 chr1B.!!$F1 2562
4 TraesCS1A01G418500 chr3B 804980651 804981546 895 False 1434.0 1434 95.5360 3037 3932 1 chr3B.!!$F1 895
5 TraesCS1A01G418500 chr6A 98652570 98653443 873 True 1299.0 1299 93.1570 3040 3944 1 chr6A.!!$R1 904
6 TraesCS1A01G418500 chr7A 703080518 703081192 674 True 1110.0 1110 96.1930 3262 3944 1 chr7A.!!$R1 682
7 TraesCS1A01G418500 chr2D 427945995 427947069 1074 False 526.0 878 96.8100 3040 3930 2 chr2D.!!$F1 890
8 TraesCS1A01G418500 chr2A 108516475 108518043 1568 True 412.5 660 91.6475 3040 3932 2 chr2A.!!$R3 892
9 TraesCS1A01G418500 chr6D 76079506 76080875 1369 True 342.5 542 96.4325 3040 3932 2 chr6D.!!$R2 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.0 4.73 F
546 1624 0.035458 CCAATCGCTACATCCTCCCC 59.965 60.0 0.00 0.00 0.0 4.81 F
921 2034 0.106149 GGGTCGGGTGGCACTATAAG 59.894 60.0 18.45 4.94 0.0 1.73 F
1732 2851 0.325933 CATGTTCCTGCTCCTCACCA 59.674 55.0 0.00 0.00 0.0 4.17 F
2785 3922 0.320073 TTTTGAGGCCCTGTACGACG 60.320 55.0 0.00 0.00 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 3248 0.667487 CGACGGCAGAAGCTTCTTGA 60.667 55.000 26.44 0.00 41.70 3.02 R
2376 3513 1.341531 ACATACAGATACCGCTCTGGC 59.658 52.381 5.76 0.00 45.67 4.85 R
2645 3782 0.605589 CCGACCAACCCTCACCTTTC 60.606 60.000 0.00 0.00 0.00 2.62 R
2920 4060 0.796312 AGAAACGATTGCACGCGAAT 59.204 45.000 15.93 0.98 36.70 3.34 R
3883 6151 7.172703 GTCAGGTTGTTGTAACATAGCTAGTTT 59.827 37.037 11.97 4.81 38.95 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.883142 ATGACAAGAAAAGGAGTAGATTTAGAG 57.117 33.333 0.00 0.00 0.00 2.43
27 28 9.090103 TGACAAGAAAAGGAGTAGATTTAGAGA 57.910 33.333 0.00 0.00 0.00 3.10
28 29 9.930693 GACAAGAAAAGGAGTAGATTTAGAGAA 57.069 33.333 0.00 0.00 0.00 2.87
32 33 9.727859 AGAAAAGGAGTAGATTTAGAGAAAACC 57.272 33.333 0.00 0.00 0.00 3.27
33 34 9.727859 GAAAAGGAGTAGATTTAGAGAAAACCT 57.272 33.333 0.00 0.00 0.00 3.50
38 39 9.602568 GGAGTAGATTTAGAGAAAACCTTAAGG 57.397 37.037 20.42 20.42 42.17 2.69
50 51 1.073177 CCTTAAGGTGCGTGTTACGG 58.927 55.000 13.83 0.00 42.82 4.02
51 52 1.337074 CCTTAAGGTGCGTGTTACGGA 60.337 52.381 13.83 0.00 42.82 4.69
58 59 2.728690 TGCGTGTTACGGACAAGTAT 57.271 45.000 3.41 0.00 42.82 2.12
59 60 3.029320 TGCGTGTTACGGACAAGTATT 57.971 42.857 3.41 0.00 42.82 1.89
60 61 2.988493 TGCGTGTTACGGACAAGTATTC 59.012 45.455 3.41 0.00 42.82 1.75
61 62 3.248266 GCGTGTTACGGACAAGTATTCT 58.752 45.455 3.41 0.00 42.82 2.40
62 63 3.302699 GCGTGTTACGGACAAGTATTCTC 59.697 47.826 3.41 0.00 42.82 2.87
63 64 3.541130 CGTGTTACGGACAAGTATTCTCG 59.459 47.826 0.00 0.00 40.65 4.04
64 65 3.302699 GTGTTACGGACAAGTATTCTCGC 59.697 47.826 0.00 0.00 40.65 5.03
65 66 3.057386 TGTTACGGACAAGTATTCTCGCA 60.057 43.478 0.00 0.00 34.69 5.10
66 67 2.736144 ACGGACAAGTATTCTCGCAA 57.264 45.000 0.00 0.00 0.00 4.85
67 68 3.034721 ACGGACAAGTATTCTCGCAAA 57.965 42.857 0.00 0.00 0.00 3.68
68 69 2.993899 ACGGACAAGTATTCTCGCAAAG 59.006 45.455 0.00 0.00 0.00 2.77
69 70 2.222819 CGGACAAGTATTCTCGCAAAGC 60.223 50.000 0.00 0.00 0.00 3.51
80 81 4.633980 GCAAAGCGAACCAACCTG 57.366 55.556 0.00 0.00 0.00 4.00
81 82 1.733526 GCAAAGCGAACCAACCTGT 59.266 52.632 0.00 0.00 0.00 4.00
82 83 0.594796 GCAAAGCGAACCAACCTGTG 60.595 55.000 0.00 0.00 0.00 3.66
95 96 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
96 97 1.354368 ACCTGTGGTTGGATGGTTAGG 59.646 52.381 0.00 0.00 27.29 2.69
97 98 1.354368 CCTGTGGTTGGATGGTTAGGT 59.646 52.381 0.00 0.00 0.00 3.08
98 99 2.436417 CTGTGGTTGGATGGTTAGGTG 58.564 52.381 0.00 0.00 0.00 4.00
99 100 2.039746 CTGTGGTTGGATGGTTAGGTGA 59.960 50.000 0.00 0.00 0.00 4.02
100 101 2.443632 TGTGGTTGGATGGTTAGGTGAA 59.556 45.455 0.00 0.00 0.00 3.18
101 102 2.817844 GTGGTTGGATGGTTAGGTGAAC 59.182 50.000 0.00 0.00 37.31 3.18
102 103 2.443632 TGGTTGGATGGTTAGGTGAACA 59.556 45.455 0.00 0.00 40.09 3.18
103 104 3.081804 GGTTGGATGGTTAGGTGAACAG 58.918 50.000 0.00 0.00 40.09 3.16
104 105 3.497942 GGTTGGATGGTTAGGTGAACAGT 60.498 47.826 0.00 0.00 40.09 3.55
105 106 3.417069 TGGATGGTTAGGTGAACAGTG 57.583 47.619 0.00 0.00 40.09 3.66
106 107 2.708861 TGGATGGTTAGGTGAACAGTGT 59.291 45.455 0.00 0.00 40.09 3.55
107 108 3.904965 TGGATGGTTAGGTGAACAGTGTA 59.095 43.478 0.00 0.00 40.09 2.90
108 109 4.534500 TGGATGGTTAGGTGAACAGTGTAT 59.466 41.667 0.00 0.00 40.09 2.29
109 110 5.116882 GGATGGTTAGGTGAACAGTGTATC 58.883 45.833 0.00 0.00 40.09 2.24
110 111 4.546829 TGGTTAGGTGAACAGTGTATCC 57.453 45.455 0.00 0.00 40.09 2.59
111 112 4.164981 TGGTTAGGTGAACAGTGTATCCT 58.835 43.478 15.02 15.02 40.09 3.24
112 113 4.222145 TGGTTAGGTGAACAGTGTATCCTC 59.778 45.833 14.35 2.08 40.09 3.71
113 114 4.421948 GTTAGGTGAACAGTGTATCCTCG 58.578 47.826 14.35 0.00 38.02 4.63
114 115 1.825474 AGGTGAACAGTGTATCCTCGG 59.175 52.381 0.00 0.00 0.00 4.63
115 116 1.549170 GGTGAACAGTGTATCCTCGGT 59.451 52.381 0.00 0.00 0.00 4.69
116 117 2.416972 GGTGAACAGTGTATCCTCGGTC 60.417 54.545 0.00 0.00 0.00 4.79
117 118 1.822990 TGAACAGTGTATCCTCGGTCC 59.177 52.381 0.00 0.00 0.00 4.46
118 119 1.822990 GAACAGTGTATCCTCGGTCCA 59.177 52.381 0.00 0.00 0.00 4.02
119 120 2.160721 ACAGTGTATCCTCGGTCCAT 57.839 50.000 0.00 0.00 0.00 3.41
120 121 2.032620 ACAGTGTATCCTCGGTCCATC 58.967 52.381 0.00 0.00 0.00 3.51
121 122 1.001268 CAGTGTATCCTCGGTCCATCG 60.001 57.143 0.00 0.00 0.00 3.84
122 123 0.314302 GTGTATCCTCGGTCCATCGG 59.686 60.000 0.00 0.00 0.00 4.18
123 124 0.826256 TGTATCCTCGGTCCATCGGG 60.826 60.000 0.00 0.00 0.00 5.14
124 125 0.826672 GTATCCTCGGTCCATCGGGT 60.827 60.000 0.00 0.00 34.93 5.28
125 126 0.105862 TATCCTCGGTCCATCGGGTT 60.106 55.000 0.00 0.00 34.93 4.11
126 127 0.981277 ATCCTCGGTCCATCGGGTTT 60.981 55.000 0.00 0.00 34.93 3.27
127 128 1.153429 CCTCGGTCCATCGGGTTTC 60.153 63.158 0.00 0.00 34.93 2.78
128 129 1.594833 CTCGGTCCATCGGGTTTCA 59.405 57.895 0.00 0.00 34.93 2.69
129 130 0.036765 CTCGGTCCATCGGGTTTCAA 60.037 55.000 0.00 0.00 34.93 2.69
130 131 0.397187 TCGGTCCATCGGGTTTCAAA 59.603 50.000 0.00 0.00 34.93 2.69
131 132 1.003812 TCGGTCCATCGGGTTTCAAAT 59.996 47.619 0.00 0.00 34.93 2.32
132 133 1.400494 CGGTCCATCGGGTTTCAAATC 59.600 52.381 0.00 0.00 34.93 2.17
133 134 1.749063 GGTCCATCGGGTTTCAAATCC 59.251 52.381 0.00 0.00 34.93 3.01
134 135 2.620627 GGTCCATCGGGTTTCAAATCCT 60.621 50.000 0.00 0.00 34.93 3.24
135 136 2.423538 GTCCATCGGGTTTCAAATCCTG 59.576 50.000 0.00 0.00 34.93 3.86
136 137 1.750778 CCATCGGGTTTCAAATCCTGG 59.249 52.381 0.00 0.00 0.00 4.45
137 138 2.446435 CATCGGGTTTCAAATCCTGGT 58.554 47.619 0.00 0.00 0.00 4.00
138 139 1.904287 TCGGGTTTCAAATCCTGGTG 58.096 50.000 0.00 0.00 0.00 4.17
139 140 0.243636 CGGGTTTCAAATCCTGGTGC 59.756 55.000 0.00 0.00 0.00 5.01
140 141 1.632589 GGGTTTCAAATCCTGGTGCT 58.367 50.000 0.00 0.00 0.00 4.40
141 142 1.546029 GGGTTTCAAATCCTGGTGCTC 59.454 52.381 0.00 0.00 0.00 4.26
142 143 1.200020 GGTTTCAAATCCTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
143 144 0.881118 TTTCAAATCCTGGTGCTCGC 59.119 50.000 0.00 0.00 0.00 5.03
144 145 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
145 146 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
146 147 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
147 148 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
148 149 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
149 150 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
150 151 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
151 152 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
152 153 2.092968 TCCTGGTGCTCGCATTTATTCT 60.093 45.455 0.00 0.00 0.00 2.40
153 154 3.133901 TCCTGGTGCTCGCATTTATTCTA 59.866 43.478 0.00 0.00 0.00 2.10
154 155 3.496130 CCTGGTGCTCGCATTTATTCTAG 59.504 47.826 0.00 0.00 0.00 2.43
155 156 4.371786 CTGGTGCTCGCATTTATTCTAGA 58.628 43.478 0.00 0.00 0.00 2.43
156 157 4.960938 TGGTGCTCGCATTTATTCTAGAT 58.039 39.130 0.00 0.00 0.00 1.98
157 158 5.368145 TGGTGCTCGCATTTATTCTAGATT 58.632 37.500 0.00 0.00 0.00 2.40
158 159 5.822519 TGGTGCTCGCATTTATTCTAGATTT 59.177 36.000 0.00 0.00 0.00 2.17
159 160 6.989759 TGGTGCTCGCATTTATTCTAGATTTA 59.010 34.615 0.00 0.00 0.00 1.40
160 161 7.661437 TGGTGCTCGCATTTATTCTAGATTTAT 59.339 33.333 0.00 0.00 0.00 1.40
161 162 8.507249 GGTGCTCGCATTTATTCTAGATTTATT 58.493 33.333 0.00 0.00 0.00 1.40
162 163 9.884465 GTGCTCGCATTTATTCTAGATTTATTT 57.116 29.630 0.00 0.00 0.00 1.40
181 182 7.663630 TTATTTTAGAATTTTCAGCGATGCG 57.336 32.000 0.00 0.00 0.00 4.73
191 192 4.505217 GCGATGCGCGTTCAGTGG 62.505 66.667 8.43 0.00 44.55 4.00
192 193 3.853330 CGATGCGCGTTCAGTGGG 61.853 66.667 8.43 0.00 34.64 4.61
193 194 2.434185 GATGCGCGTTCAGTGGGA 60.434 61.111 8.43 0.00 0.00 4.37
194 195 2.031919 ATGCGCGTTCAGTGGGAA 59.968 55.556 8.43 0.00 0.00 3.97
195 196 1.970917 GATGCGCGTTCAGTGGGAAG 61.971 60.000 8.43 0.00 35.82 3.46
196 197 3.423154 GCGCGTTCAGTGGGAAGG 61.423 66.667 8.43 0.00 42.78 3.46
197 198 2.342279 CGCGTTCAGTGGGAAGGA 59.658 61.111 0.00 0.00 42.57 3.36
198 199 1.301401 CGCGTTCAGTGGGAAGGAA 60.301 57.895 0.00 0.00 42.57 3.36
199 200 0.882927 CGCGTTCAGTGGGAAGGAAA 60.883 55.000 0.00 0.00 42.57 3.13
200 201 0.591659 GCGTTCAGTGGGAAGGAAAC 59.408 55.000 0.00 0.00 42.57 2.78
201 202 0.865769 CGTTCAGTGGGAAGGAAACG 59.134 55.000 0.00 0.00 42.57 3.60
202 203 1.808891 CGTTCAGTGGGAAGGAAACGT 60.809 52.381 3.58 0.00 42.57 3.99
203 204 2.294979 GTTCAGTGGGAAGGAAACGTT 58.705 47.619 0.00 0.00 35.82 3.99
204 205 2.249844 TCAGTGGGAAGGAAACGTTC 57.750 50.000 0.00 0.00 0.00 3.95
219 220 1.922570 CGTTCCCGTTGACTATGAGG 58.077 55.000 0.00 0.00 0.00 3.86
220 221 1.653151 GTTCCCGTTGACTATGAGGC 58.347 55.000 0.00 0.00 0.00 4.70
221 222 0.174845 TTCCCGTTGACTATGAGGCG 59.825 55.000 0.00 0.00 0.00 5.52
222 223 1.883084 CCCGTTGACTATGAGGCGC 60.883 63.158 0.00 0.00 0.00 6.53
223 224 1.883084 CCGTTGACTATGAGGCGCC 60.883 63.158 21.89 21.89 0.00 6.53
224 225 1.141881 CGTTGACTATGAGGCGCCT 59.858 57.895 33.48 33.48 0.00 5.52
225 226 0.384309 CGTTGACTATGAGGCGCCTA 59.616 55.000 32.97 18.42 0.00 3.93
226 227 1.854227 GTTGACTATGAGGCGCCTAC 58.146 55.000 32.97 22.86 0.00 3.18
227 228 1.136305 GTTGACTATGAGGCGCCTACA 59.864 52.381 32.97 27.68 0.00 2.74
228 229 1.480789 TGACTATGAGGCGCCTACAA 58.519 50.000 32.97 19.13 0.00 2.41
229 230 2.039418 TGACTATGAGGCGCCTACAAT 58.961 47.619 32.97 24.57 0.00 2.71
230 231 2.224042 TGACTATGAGGCGCCTACAATG 60.224 50.000 32.97 23.70 0.00 2.82
231 232 2.035961 GACTATGAGGCGCCTACAATGA 59.964 50.000 32.97 16.26 0.00 2.57
232 233 2.224066 ACTATGAGGCGCCTACAATGAC 60.224 50.000 32.97 16.10 0.00 3.06
233 234 0.833287 ATGAGGCGCCTACAATGACT 59.167 50.000 32.97 10.75 0.00 3.41
234 235 0.613260 TGAGGCGCCTACAATGACTT 59.387 50.000 32.97 2.04 0.00 3.01
235 236 1.003118 TGAGGCGCCTACAATGACTTT 59.997 47.619 32.97 1.35 0.00 2.66
236 237 1.398390 GAGGCGCCTACAATGACTTTG 59.602 52.381 32.97 0.00 41.36 2.77
238 239 2.027561 AGGCGCCTACAATGACTTTGTA 60.028 45.455 31.86 12.03 46.75 2.41
251 252 9.903682 ACAATGACTTTGTAAAATCTCAAGATG 57.096 29.630 4.98 0.00 46.75 2.90
260 261 8.387190 TGTAAAATCTCAAGATGATATGCTGG 57.613 34.615 0.00 0.00 34.49 4.85
261 262 5.961396 AAATCTCAAGATGATATGCTGGC 57.039 39.130 0.00 0.00 34.49 4.85
262 263 4.912317 ATCTCAAGATGATATGCTGGCT 57.088 40.909 0.00 0.00 32.68 4.75
263 264 4.268797 TCTCAAGATGATATGCTGGCTC 57.731 45.455 0.00 0.00 0.00 4.70
264 265 3.644738 TCTCAAGATGATATGCTGGCTCA 59.355 43.478 0.00 0.00 0.00 4.26
265 266 3.997681 CTCAAGATGATATGCTGGCTCAG 59.002 47.826 0.00 0.00 34.12 3.35
266 267 3.390311 TCAAGATGATATGCTGGCTCAGT 59.610 43.478 4.45 0.00 33.43 3.41
267 268 3.681593 AGATGATATGCTGGCTCAGTC 57.318 47.619 4.45 0.00 33.43 3.51
268 269 3.241156 AGATGATATGCTGGCTCAGTCT 58.759 45.455 4.45 0.00 33.43 3.24
269 270 3.258872 AGATGATATGCTGGCTCAGTCTC 59.741 47.826 4.45 0.00 33.43 3.36
270 271 2.675583 TGATATGCTGGCTCAGTCTCT 58.324 47.619 4.45 0.00 33.43 3.10
271 272 3.036819 TGATATGCTGGCTCAGTCTCTT 58.963 45.455 4.45 0.00 33.43 2.85
272 273 2.975732 TATGCTGGCTCAGTCTCTTG 57.024 50.000 4.45 0.00 33.43 3.02
273 274 1.273759 ATGCTGGCTCAGTCTCTTGA 58.726 50.000 4.45 0.00 33.43 3.02
274 275 1.051008 TGCTGGCTCAGTCTCTTGAA 58.949 50.000 4.45 0.00 33.43 2.69
275 276 1.001746 TGCTGGCTCAGTCTCTTGAAG 59.998 52.381 4.45 0.00 33.43 3.02
276 277 1.675415 GCTGGCTCAGTCTCTTGAAGG 60.675 57.143 0.00 0.00 33.43 3.46
277 278 1.622811 CTGGCTCAGTCTCTTGAAGGT 59.377 52.381 0.00 0.00 0.00 3.50
278 279 1.345741 TGGCTCAGTCTCTTGAAGGTG 59.654 52.381 0.00 0.00 0.00 4.00
279 280 1.338579 GGCTCAGTCTCTTGAAGGTGG 60.339 57.143 0.00 0.00 0.00 4.61
280 281 1.346068 GCTCAGTCTCTTGAAGGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
281 282 2.869636 GCTCAGTCTCTTGAAGGTGGTG 60.870 54.545 0.00 0.00 0.00 4.17
282 283 1.070758 TCAGTCTCTTGAAGGTGGTGC 59.929 52.381 0.00 0.00 0.00 5.01
283 284 1.071385 CAGTCTCTTGAAGGTGGTGCT 59.929 52.381 0.00 0.00 0.00 4.40
284 285 1.346068 AGTCTCTTGAAGGTGGTGCTC 59.654 52.381 0.00 0.00 0.00 4.26
285 286 1.070758 GTCTCTTGAAGGTGGTGCTCA 59.929 52.381 0.00 0.00 0.00 4.26
286 287 1.980765 TCTCTTGAAGGTGGTGCTCAT 59.019 47.619 0.00 0.00 0.00 2.90
287 288 3.055819 GTCTCTTGAAGGTGGTGCTCATA 60.056 47.826 0.00 0.00 0.00 2.15
288 289 3.582647 TCTCTTGAAGGTGGTGCTCATAA 59.417 43.478 0.00 0.00 0.00 1.90
289 290 4.041567 TCTCTTGAAGGTGGTGCTCATAAA 59.958 41.667 0.00 0.00 0.00 1.40
290 291 4.326826 TCTTGAAGGTGGTGCTCATAAAG 58.673 43.478 0.00 0.00 0.00 1.85
291 292 4.041567 TCTTGAAGGTGGTGCTCATAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
292 293 4.365514 TGAAGGTGGTGCTCATAAAGAA 57.634 40.909 0.00 0.00 0.00 2.52
293 294 4.326826 TGAAGGTGGTGCTCATAAAGAAG 58.673 43.478 0.00 0.00 0.00 2.85
294 295 3.356529 AGGTGGTGCTCATAAAGAAGG 57.643 47.619 0.00 0.00 0.00 3.46
295 296 2.025887 AGGTGGTGCTCATAAAGAAGGG 60.026 50.000 0.00 0.00 0.00 3.95
296 297 2.290960 GGTGGTGCTCATAAAGAAGGGT 60.291 50.000 0.00 0.00 0.00 4.34
297 298 2.749621 GTGGTGCTCATAAAGAAGGGTG 59.250 50.000 0.00 0.00 0.00 4.61
298 299 2.375174 TGGTGCTCATAAAGAAGGGTGT 59.625 45.455 0.00 0.00 0.00 4.16
299 300 2.749621 GGTGCTCATAAAGAAGGGTGTG 59.250 50.000 0.00 0.00 0.00 3.82
300 301 2.162408 GTGCTCATAAAGAAGGGTGTGC 59.838 50.000 0.00 0.00 0.00 4.57
301 302 1.398390 GCTCATAAAGAAGGGTGTGCG 59.602 52.381 0.00 0.00 0.00 5.34
302 303 2.699954 CTCATAAAGAAGGGTGTGCGT 58.300 47.619 0.00 0.00 0.00 5.24
303 304 2.416547 CTCATAAAGAAGGGTGTGCGTG 59.583 50.000 0.00 0.00 0.00 5.34
304 305 2.151202 CATAAAGAAGGGTGTGCGTGT 58.849 47.619 0.00 0.00 0.00 4.49
305 306 1.588674 TAAAGAAGGGTGTGCGTGTG 58.411 50.000 0.00 0.00 0.00 3.82
306 307 0.393808 AAAGAAGGGTGTGCGTGTGT 60.394 50.000 0.00 0.00 0.00 3.72
307 308 1.095228 AAGAAGGGTGTGCGTGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
308 309 3.181169 GAAGGGTGTGCGTGTGTGC 62.181 63.158 0.00 0.00 0.00 4.57
311 312 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
312 313 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
313 314 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
314 315 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
315 316 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
316 317 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
317 318 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
318 319 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
319 320 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
320 321 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
321 322 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
322 323 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
323 324 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
324 325 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
325 326 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
326 327 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
327 328 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
328 329 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
329 330 4.403113 TGCGTTCATAAGGGTGAGTGTATA 59.597 41.667 0.00 0.00 0.00 1.47
330 331 4.743644 GCGTTCATAAGGGTGAGTGTATAC 59.256 45.833 0.00 0.00 0.00 1.47
331 332 4.974275 CGTTCATAAGGGTGAGTGTATACG 59.026 45.833 0.00 0.00 0.00 3.06
332 333 5.449588 CGTTCATAAGGGTGAGTGTATACGT 60.450 44.000 0.00 0.00 0.00 3.57
333 334 5.509716 TCATAAGGGTGAGTGTATACGTG 57.490 43.478 0.00 0.00 0.00 4.49
334 335 4.951715 TCATAAGGGTGAGTGTATACGTGT 59.048 41.667 0.00 0.00 0.00 4.49
335 336 6.121590 TCATAAGGGTGAGTGTATACGTGTA 58.878 40.000 0.00 0.00 0.00 2.90
336 337 6.774170 TCATAAGGGTGAGTGTATACGTGTAT 59.226 38.462 0.00 0.00 0.00 2.29
337 338 7.938490 TCATAAGGGTGAGTGTATACGTGTATA 59.062 37.037 0.00 0.00 0.00 1.47
338 339 8.737175 CATAAGGGTGAGTGTATACGTGTATAT 58.263 37.037 0.00 0.00 31.45 0.86
339 340 9.964354 ATAAGGGTGAGTGTATACGTGTATATA 57.036 33.333 0.00 0.00 31.45 0.86
340 341 8.874744 AAGGGTGAGTGTATACGTGTATATAT 57.125 34.615 0.00 0.00 31.45 0.86
341 342 9.964354 AAGGGTGAGTGTATACGTGTATATATA 57.036 33.333 0.00 0.00 31.45 0.86
347 348 9.794653 GAGTGTATACGTGTATATATATGAGCG 57.205 37.037 5.44 8.76 31.45 5.03
348 349 8.771766 AGTGTATACGTGTATATATATGAGCGG 58.228 37.037 5.44 0.00 31.45 5.52
349 350 8.554528 GTGTATACGTGTATATATATGAGCGGT 58.445 37.037 5.44 0.00 31.45 5.68
350 351 9.112725 TGTATACGTGTATATATATGAGCGGTT 57.887 33.333 5.44 2.61 31.45 4.44
351 352 9.378597 GTATACGTGTATATATATGAGCGGTTG 57.621 37.037 5.44 0.00 31.45 3.77
352 353 6.263516 ACGTGTATATATATGAGCGGTTGT 57.736 37.500 5.44 0.00 0.00 3.32
353 354 6.090783 ACGTGTATATATATGAGCGGTTGTG 58.909 40.000 5.44 0.00 0.00 3.33
354 355 6.090783 CGTGTATATATATGAGCGGTTGTGT 58.909 40.000 5.44 0.00 0.00 3.72
355 356 6.584942 CGTGTATATATATGAGCGGTTGTGTT 59.415 38.462 5.44 0.00 0.00 3.32
356 357 7.115805 CGTGTATATATATGAGCGGTTGTGTTT 59.884 37.037 5.44 0.00 0.00 2.83
357 358 8.221100 GTGTATATATATGAGCGGTTGTGTTTG 58.779 37.037 5.44 0.00 0.00 2.93
358 359 7.929245 TGTATATATATGAGCGGTTGTGTTTGT 59.071 33.333 5.44 0.00 0.00 2.83
359 360 9.414295 GTATATATATGAGCGGTTGTGTTTGTA 57.586 33.333 5.44 0.00 0.00 2.41
360 361 4.939509 ATATGAGCGGTTGTGTTTGTAC 57.060 40.909 0.00 0.00 0.00 2.90
361 362 1.301423 TGAGCGGTTGTGTTTGTACC 58.699 50.000 0.00 0.00 0.00 3.34
368 369 4.612932 GGTTGTGTTTGTACCGTGTTAA 57.387 40.909 0.00 0.00 0.00 2.01
369 370 4.979388 GGTTGTGTTTGTACCGTGTTAAA 58.021 39.130 0.00 0.00 0.00 1.52
370 371 5.397326 GGTTGTGTTTGTACCGTGTTAAAA 58.603 37.500 0.00 0.00 0.00 1.52
371 372 5.860716 GGTTGTGTTTGTACCGTGTTAAAAA 59.139 36.000 0.00 0.00 0.00 1.94
372 373 6.033725 GGTTGTGTTTGTACCGTGTTAAAAAG 59.966 38.462 0.00 0.00 0.00 2.27
373 374 6.251655 TGTGTTTGTACCGTGTTAAAAAGT 57.748 33.333 0.00 0.00 0.00 2.66
374 375 6.084925 TGTGTTTGTACCGTGTTAAAAAGTG 58.915 36.000 0.00 0.00 0.00 3.16
375 376 6.085573 GTGTTTGTACCGTGTTAAAAAGTGT 58.914 36.000 0.00 0.00 0.00 3.55
376 377 6.581919 GTGTTTGTACCGTGTTAAAAAGTGTT 59.418 34.615 0.00 0.00 0.00 3.32
377 378 6.800892 TGTTTGTACCGTGTTAAAAAGTGTTC 59.199 34.615 0.00 0.00 0.00 3.18
378 379 6.492007 TTGTACCGTGTTAAAAAGTGTTCA 57.508 33.333 0.00 0.00 0.00 3.18
379 380 6.109320 TGTACCGTGTTAAAAAGTGTTCAG 57.891 37.500 0.00 0.00 0.00 3.02
380 381 4.625972 ACCGTGTTAAAAAGTGTTCAGG 57.374 40.909 0.00 0.00 0.00 3.86
381 382 3.181494 ACCGTGTTAAAAAGTGTTCAGGC 60.181 43.478 0.00 0.00 0.00 4.85
382 383 3.181495 CCGTGTTAAAAAGTGTTCAGGCA 60.181 43.478 0.00 0.00 0.00 4.75
383 384 4.416620 CGTGTTAAAAAGTGTTCAGGCAA 58.583 39.130 0.00 0.00 0.00 4.52
384 385 4.859798 CGTGTTAAAAAGTGTTCAGGCAAA 59.140 37.500 0.00 0.00 0.00 3.68
385 386 5.346281 CGTGTTAAAAAGTGTTCAGGCAAAA 59.654 36.000 0.00 0.00 0.00 2.44
386 387 6.128795 CGTGTTAAAAAGTGTTCAGGCAAAAA 60.129 34.615 0.00 0.00 0.00 1.94
387 388 7.012943 GTGTTAAAAAGTGTTCAGGCAAAAAC 58.987 34.615 0.00 0.00 0.00 2.43
388 389 6.706270 TGTTAAAAAGTGTTCAGGCAAAAACA 59.294 30.769 0.00 0.00 33.18 2.83
389 390 7.226720 TGTTAAAAAGTGTTCAGGCAAAAACAA 59.773 29.630 1.68 0.00 37.15 2.83
390 391 6.625873 AAAAAGTGTTCAGGCAAAAACAAA 57.374 29.167 1.68 0.00 37.15 2.83
391 392 6.625873 AAAAGTGTTCAGGCAAAAACAAAA 57.374 29.167 1.68 0.00 37.15 2.44
392 393 6.625873 AAAGTGTTCAGGCAAAAACAAAAA 57.374 29.167 1.68 0.00 37.15 1.94
393 394 5.605564 AGTGTTCAGGCAAAAACAAAAAC 57.394 34.783 1.68 0.00 37.15 2.43
394 395 5.059833 AGTGTTCAGGCAAAAACAAAAACA 58.940 33.333 1.68 0.00 37.15 2.83
395 396 5.529060 AGTGTTCAGGCAAAAACAAAAACAA 59.471 32.000 1.68 0.00 37.15 2.83
396 397 6.038714 AGTGTTCAGGCAAAAACAAAAACAAA 59.961 30.769 1.68 0.00 37.15 2.83
397 398 6.693113 GTGTTCAGGCAAAAACAAAAACAAAA 59.307 30.769 1.68 0.00 37.15 2.44
398 399 7.220875 GTGTTCAGGCAAAAACAAAAACAAAAA 59.779 29.630 1.68 0.00 37.15 1.94
399 400 7.220875 TGTTCAGGCAAAAACAAAAACAAAAAC 59.779 29.630 0.00 0.00 32.69 2.43
400 401 6.795399 TCAGGCAAAAACAAAAACAAAAACA 58.205 28.000 0.00 0.00 0.00 2.83
401 402 7.257722 TCAGGCAAAAACAAAAACAAAAACAA 58.742 26.923 0.00 0.00 0.00 2.83
402 403 7.759433 TCAGGCAAAAACAAAAACAAAAACAAA 59.241 25.926 0.00 0.00 0.00 2.83
403 404 8.382875 CAGGCAAAAACAAAAACAAAAACAAAA 58.617 25.926 0.00 0.00 0.00 2.44
404 405 8.935844 AGGCAAAAACAAAAACAAAAACAAAAA 58.064 22.222 0.00 0.00 0.00 1.94
405 406 9.708222 GGCAAAAACAAAAACAAAAACAAAAAT 57.292 22.222 0.00 0.00 0.00 1.82
423 424 9.589111 AACAAAAATAAAAATACGGACAAGTGT 57.411 25.926 0.00 0.00 0.00 3.55
424 425 9.026074 ACAAAAATAAAAATACGGACAAGTGTG 57.974 29.630 0.00 0.00 0.00 3.82
425 426 8.484008 CAAAAATAAAAATACGGACAAGTGTGG 58.516 33.333 0.00 0.00 0.00 4.17
426 427 7.513371 AAATAAAAATACGGACAAGTGTGGA 57.487 32.000 0.00 0.00 0.00 4.02
427 428 6.737254 ATAAAAATACGGACAAGTGTGGAG 57.263 37.500 0.00 0.00 0.00 3.86
428 429 2.762535 AATACGGACAAGTGTGGAGG 57.237 50.000 0.00 0.00 0.00 4.30
429 430 0.249398 ATACGGACAAGTGTGGAGGC 59.751 55.000 0.00 0.00 0.00 4.70
457 458 6.508088 CGAGCGTAGAATTGAATAGGAAACAC 60.508 42.308 0.00 0.00 0.00 3.32
503 1580 3.378331 GACTCGTCGGCGTCATCGT 62.378 63.158 10.18 0.00 39.49 3.73
504 1581 2.648102 CTCGTCGGCGTCATCGTC 60.648 66.667 10.18 0.00 39.49 4.20
546 1624 0.035458 CCAATCGCTACATCCTCCCC 59.965 60.000 0.00 0.00 0.00 4.81
557 1635 5.241728 GCTACATCCTCCCCAAAATACATTC 59.758 44.000 0.00 0.00 0.00 2.67
643 1721 0.461870 CCTCGGCATCAACGGATTCA 60.462 55.000 0.00 0.00 0.00 2.57
707 1785 0.107017 AGGACATACTGGTGCATGCC 60.107 55.000 16.68 6.42 0.00 4.40
824 1909 0.888736 CAATGAGGCGACACCAACCA 60.889 55.000 0.00 0.00 43.14 3.67
825 1910 0.606401 AATGAGGCGACACCAACCAG 60.606 55.000 0.00 0.00 43.14 4.00
827 1912 3.537206 GAGGCGACACCAACCAGCT 62.537 63.158 0.00 0.00 43.14 4.24
921 2034 0.106149 GGGTCGGGTGGCACTATAAG 59.894 60.000 18.45 4.94 0.00 1.73
977 2090 2.529632 AGTGACACTGGAGACATAGCA 58.470 47.619 7.47 0.00 41.51 3.49
978 2091 2.495270 AGTGACACTGGAGACATAGCAG 59.505 50.000 7.47 0.00 41.51 4.24
979 2092 1.205655 TGACACTGGAGACATAGCAGC 59.794 52.381 0.00 0.00 41.51 5.25
1040 2153 3.077556 CTGCTACCCGGACCAGCT 61.078 66.667 18.65 0.00 36.26 4.24
1149 2265 2.870341 CGGCGCCATGTCATACACG 61.870 63.158 28.98 3.22 0.00 4.49
1185 2301 3.044059 GCTCAATGCTGCGGTGGAC 62.044 63.158 0.00 0.00 38.95 4.02
1492 2611 1.733399 GTGGACGAGCTGGACGAAC 60.733 63.158 1.44 0.00 34.70 3.95
1497 2616 1.226156 CGAGCTGGACGAACGAGAG 60.226 63.158 0.00 0.00 0.00 3.20
1732 2851 0.325933 CATGTTCCTGCTCCTCACCA 59.674 55.000 0.00 0.00 0.00 4.17
1734 2853 1.067295 TGTTCCTGCTCCTCACCATT 58.933 50.000 0.00 0.00 0.00 3.16
1779 2898 2.283676 TCGCCCGACTCCTTCCTT 60.284 61.111 0.00 0.00 0.00 3.36
2247 3384 2.365768 GAGGGGGAGGTCTGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
2406 3543 2.071844 ATCTGTATGTCGTCGGCCGG 62.072 60.000 27.83 10.69 37.11 6.13
2481 3618 1.213013 GACGGCAGCTCTCGAAAGA 59.787 57.895 11.58 0.00 39.12 2.52
2511 3648 1.153086 CCTTAGAGGCGGCTGCATT 60.153 57.895 19.63 6.67 45.35 3.56
2523 3660 1.798725 CTGCATTGCCGCTTTCACG 60.799 57.895 6.12 0.00 0.00 4.35
2554 3691 2.069273 CAACGTCTTCGAAGGAGCAAT 58.931 47.619 24.37 4.53 40.62 3.56
2616 3753 1.542030 GACCACACGAGTCTCTGTGAT 59.458 52.381 23.19 13.48 40.28 3.06
2631 3768 1.227527 TGATGGCATAAGGCGGTCG 60.228 57.895 0.00 0.00 46.16 4.79
2648 3785 3.961414 GGTGTGGGAGGCGGGAAA 61.961 66.667 0.00 0.00 0.00 3.13
2667 3804 1.914764 GGTGAGGGTTGGTCGGGTA 60.915 63.158 0.00 0.00 0.00 3.69
2668 3805 1.294459 GTGAGGGTTGGTCGGGTAC 59.706 63.158 0.00 0.00 0.00 3.34
2785 3922 0.320073 TTTTGAGGCCCTGTACGACG 60.320 55.000 0.00 0.00 0.00 5.12
2832 3969 1.078426 GGTGGGTGACGAAGATGGG 60.078 63.158 0.00 0.00 0.00 4.00
2850 3987 1.290134 GGGAAATGGAGGAGAGGTGT 58.710 55.000 0.00 0.00 0.00 4.16
2856 3993 4.803426 GAGGAGAGGTGTGCGGCG 62.803 72.222 0.51 0.51 0.00 6.46
2877 4014 3.092511 TGGATGGCAGGAGAGGGC 61.093 66.667 0.00 0.00 0.00 5.19
2907 4044 1.153168 CATGGCCACGACCTTAGGG 60.153 63.158 8.16 0.00 38.88 3.53
2914 4054 1.918800 ACGACCTTAGGGGCAAGCT 60.919 57.895 2.32 0.00 41.90 3.74
2928 4068 2.452813 AAGCTGCCGTATTCGCGTG 61.453 57.895 5.77 0.00 35.54 5.34
2971 4122 5.243283 AGAAGTTTCGTGTGTAGTAGGATGT 59.757 40.000 0.00 0.00 0.00 3.06
2972 4123 4.806330 AGTTTCGTGTGTAGTAGGATGTG 58.194 43.478 0.00 0.00 0.00 3.21
2973 4124 3.861276 TTCGTGTGTAGTAGGATGTGG 57.139 47.619 0.00 0.00 0.00 4.17
2979 4130 3.454447 TGTGTAGTAGGATGTGGGGAATG 59.546 47.826 0.00 0.00 0.00 2.67
3017 4172 6.837471 TGGTGATCATGTTTGATGATGAAA 57.163 33.333 0.00 0.00 42.73 2.69
3020 4175 7.092079 GGTGATCATGTTTGATGATGAAACAA 58.908 34.615 13.79 0.00 44.32 2.83
3048 4205 3.420893 CTTTTTGCCATGTACTCCCTCA 58.579 45.455 0.00 0.00 0.00 3.86
3060 4217 1.985895 ACTCCCTCAGTCCCGAAAAAT 59.014 47.619 0.00 0.00 0.00 1.82
3407 4570 1.383799 CCCCTGCCAATCTCCACAA 59.616 57.895 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.883142 CTCTAAATCTACTCCTTTTCTTGTCAT 57.117 33.333 0.00 0.00 0.00 3.06
1 2 9.090103 TCTCTAAATCTACTCCTTTTCTTGTCA 57.910 33.333 0.00 0.00 0.00 3.58
2 3 9.930693 TTCTCTAAATCTACTCCTTTTCTTGTC 57.069 33.333 0.00 0.00 0.00 3.18
6 7 9.727859 GGTTTTCTCTAAATCTACTCCTTTTCT 57.272 33.333 0.00 0.00 0.00 2.52
7 8 9.727859 AGGTTTTCTCTAAATCTACTCCTTTTC 57.272 33.333 0.00 0.00 35.40 2.29
12 13 9.602568 CCTTAAGGTTTTCTCTAAATCTACTCC 57.397 37.037 13.83 0.00 36.14 3.85
24 25 8.666088 CGTAACACGCACCTTAAGGTTTTCTC 62.666 46.154 24.99 10.30 39.27 2.87
25 26 6.978457 CGTAACACGCACCTTAAGGTTTTCT 61.978 44.000 24.99 9.73 39.27 2.52
26 27 4.841407 CGTAACACGCACCTTAAGGTTTTC 60.841 45.833 24.99 14.95 39.27 2.29
27 28 3.002553 CGTAACACGCACCTTAAGGTTTT 59.997 43.478 24.99 14.15 39.27 2.43
28 29 2.545106 CGTAACACGCACCTTAAGGTTT 59.455 45.455 24.99 17.60 39.27 3.27
29 30 2.137523 CGTAACACGCACCTTAAGGTT 58.862 47.619 24.99 11.75 39.27 3.50
30 31 1.606224 CCGTAACACGCACCTTAAGGT 60.606 52.381 21.96 21.96 43.81 3.50
31 32 1.073177 CCGTAACACGCACCTTAAGG 58.927 55.000 20.42 20.42 40.91 2.69
32 33 1.723003 GTCCGTAACACGCACCTTAAG 59.277 52.381 0.00 0.00 40.91 1.85
33 34 1.068281 TGTCCGTAACACGCACCTTAA 59.932 47.619 0.00 0.00 40.91 1.85
34 35 0.672889 TGTCCGTAACACGCACCTTA 59.327 50.000 0.00 0.00 40.91 2.69
35 36 0.179078 TTGTCCGTAACACGCACCTT 60.179 50.000 0.00 0.00 40.91 3.50
36 37 0.599204 CTTGTCCGTAACACGCACCT 60.599 55.000 0.00 0.00 40.91 4.00
37 38 0.877213 ACTTGTCCGTAACACGCACC 60.877 55.000 0.00 0.00 40.91 5.01
38 39 1.769733 TACTTGTCCGTAACACGCAC 58.230 50.000 0.00 0.00 40.91 5.34
39 40 2.728690 ATACTTGTCCGTAACACGCA 57.271 45.000 0.00 0.00 40.91 5.24
40 41 3.248266 AGAATACTTGTCCGTAACACGC 58.752 45.455 0.00 0.00 40.91 5.34
41 42 3.541130 CGAGAATACTTGTCCGTAACACG 59.459 47.826 0.00 0.00 42.11 4.49
42 43 3.302699 GCGAGAATACTTGTCCGTAACAC 59.697 47.826 0.00 0.00 37.70 3.32
43 44 3.057386 TGCGAGAATACTTGTCCGTAACA 60.057 43.478 0.00 0.00 35.59 2.41
44 45 3.504863 TGCGAGAATACTTGTCCGTAAC 58.495 45.455 0.00 0.00 0.00 2.50
45 46 3.853831 TGCGAGAATACTTGTCCGTAA 57.146 42.857 0.00 0.00 0.00 3.18
46 47 3.853831 TTGCGAGAATACTTGTCCGTA 57.146 42.857 0.00 0.00 0.00 4.02
47 48 2.736144 TTGCGAGAATACTTGTCCGT 57.264 45.000 0.00 0.00 0.00 4.69
48 49 2.222819 GCTTTGCGAGAATACTTGTCCG 60.223 50.000 0.00 0.00 0.00 4.79
49 50 3.391227 GCTTTGCGAGAATACTTGTCC 57.609 47.619 0.00 0.00 0.00 4.02
63 64 0.594796 CACAGGTTGGTTCGCTTTGC 60.595 55.000 0.00 0.00 0.00 3.68
64 65 0.030638 CCACAGGTTGGTTCGCTTTG 59.969 55.000 0.00 0.00 41.10 2.77
65 66 2.414750 CCACAGGTTGGTTCGCTTT 58.585 52.632 0.00 0.00 41.10 3.51
66 67 4.157607 CCACAGGTTGGTTCGCTT 57.842 55.556 0.00 0.00 41.10 4.68
76 77 1.354368 CCTAACCATCCAACCACAGGT 59.646 52.381 0.00 0.00 37.65 4.00
77 78 1.354368 ACCTAACCATCCAACCACAGG 59.646 52.381 0.00 0.00 0.00 4.00
78 79 2.039746 TCACCTAACCATCCAACCACAG 59.960 50.000 0.00 0.00 0.00 3.66
79 80 2.058705 TCACCTAACCATCCAACCACA 58.941 47.619 0.00 0.00 0.00 4.17
80 81 2.817844 GTTCACCTAACCATCCAACCAC 59.182 50.000 0.00 0.00 31.38 4.16
81 82 2.443632 TGTTCACCTAACCATCCAACCA 59.556 45.455 0.00 0.00 37.27 3.67
82 83 3.081804 CTGTTCACCTAACCATCCAACC 58.918 50.000 0.00 0.00 37.27 3.77
83 84 3.502211 CACTGTTCACCTAACCATCCAAC 59.498 47.826 0.00 0.00 37.27 3.77
84 85 3.137544 ACACTGTTCACCTAACCATCCAA 59.862 43.478 0.00 0.00 37.27 3.53
85 86 2.708861 ACACTGTTCACCTAACCATCCA 59.291 45.455 0.00 0.00 37.27 3.41
86 87 3.418684 ACACTGTTCACCTAACCATCC 57.581 47.619 0.00 0.00 37.27 3.51
87 88 5.104900 AGGATACACTGTTCACCTAACCATC 60.105 44.000 0.00 0.00 36.62 3.51
88 89 4.783227 AGGATACACTGTTCACCTAACCAT 59.217 41.667 0.00 0.00 36.62 3.55
89 90 4.164981 AGGATACACTGTTCACCTAACCA 58.835 43.478 0.00 0.00 36.62 3.67
90 91 4.677250 CGAGGATACACTGTTCACCTAACC 60.677 50.000 0.00 0.00 36.62 2.85
91 92 4.421948 CGAGGATACACTGTTCACCTAAC 58.578 47.826 0.00 0.00 37.61 2.34
92 93 3.446161 CCGAGGATACACTGTTCACCTAA 59.554 47.826 0.00 0.00 41.41 2.69
93 94 3.021695 CCGAGGATACACTGTTCACCTA 58.978 50.000 0.00 0.00 41.41 3.08
94 95 1.825474 CCGAGGATACACTGTTCACCT 59.175 52.381 0.00 0.00 41.41 4.00
95 96 1.549170 ACCGAGGATACACTGTTCACC 59.451 52.381 0.00 0.00 41.41 4.02
96 97 2.416972 GGACCGAGGATACACTGTTCAC 60.417 54.545 0.00 0.00 41.41 3.18
97 98 1.822990 GGACCGAGGATACACTGTTCA 59.177 52.381 0.00 0.00 41.41 3.18
98 99 1.822990 TGGACCGAGGATACACTGTTC 59.177 52.381 0.00 0.00 41.41 3.18
99 100 1.933021 TGGACCGAGGATACACTGTT 58.067 50.000 0.00 0.00 41.41 3.16
100 101 2.032620 GATGGACCGAGGATACACTGT 58.967 52.381 0.00 0.00 41.41 3.55
101 102 1.001268 CGATGGACCGAGGATACACTG 60.001 57.143 0.00 0.00 41.41 3.66
102 103 1.319541 CGATGGACCGAGGATACACT 58.680 55.000 0.00 0.00 41.41 3.55
103 104 0.314302 CCGATGGACCGAGGATACAC 59.686 60.000 0.00 0.00 41.41 2.90
104 105 0.826256 CCCGATGGACCGAGGATACA 60.826 60.000 0.00 0.00 41.41 2.29
105 106 0.826672 ACCCGATGGACCGAGGATAC 60.827 60.000 0.00 0.00 34.81 2.24
106 107 0.105862 AACCCGATGGACCGAGGATA 60.106 55.000 0.00 0.00 34.81 2.59
107 108 0.981277 AAACCCGATGGACCGAGGAT 60.981 55.000 0.00 0.00 34.81 3.24
108 109 1.610554 GAAACCCGATGGACCGAGGA 61.611 60.000 0.00 0.00 34.81 3.71
109 110 1.153429 GAAACCCGATGGACCGAGG 60.153 63.158 0.00 0.00 34.81 4.63
110 111 0.036765 TTGAAACCCGATGGACCGAG 60.037 55.000 0.00 0.00 34.81 4.63
111 112 0.397187 TTTGAAACCCGATGGACCGA 59.603 50.000 0.00 0.00 34.81 4.69
112 113 1.400494 GATTTGAAACCCGATGGACCG 59.600 52.381 0.00 0.00 34.81 4.79
113 114 1.749063 GGATTTGAAACCCGATGGACC 59.251 52.381 0.00 0.00 34.81 4.46
114 115 2.423538 CAGGATTTGAAACCCGATGGAC 59.576 50.000 0.00 0.00 34.81 4.02
115 116 2.620367 CCAGGATTTGAAACCCGATGGA 60.620 50.000 0.00 0.00 34.81 3.41
116 117 1.750778 CCAGGATTTGAAACCCGATGG 59.249 52.381 0.00 0.00 37.80 3.51
117 118 2.164219 CACCAGGATTTGAAACCCGATG 59.836 50.000 0.00 0.00 0.00 3.84
118 119 2.446435 CACCAGGATTTGAAACCCGAT 58.554 47.619 0.00 0.00 0.00 4.18
119 120 1.904287 CACCAGGATTTGAAACCCGA 58.096 50.000 0.00 0.00 0.00 5.14
120 121 0.243636 GCACCAGGATTTGAAACCCG 59.756 55.000 0.00 0.00 0.00 5.28
121 122 1.546029 GAGCACCAGGATTTGAAACCC 59.454 52.381 0.00 0.00 0.00 4.11
122 123 1.200020 CGAGCACCAGGATTTGAAACC 59.800 52.381 0.00 0.00 0.00 3.27
123 124 1.401539 GCGAGCACCAGGATTTGAAAC 60.402 52.381 0.00 0.00 0.00 2.78
124 125 0.881118 GCGAGCACCAGGATTTGAAA 59.119 50.000 0.00 0.00 0.00 2.69
125 126 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
126 127 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
127 128 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
128 129 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
129 130 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
130 131 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
131 132 2.092968 AGAATAAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
132 133 2.292267 AGAATAAATGCGAGCACCAGG 58.708 47.619 0.00 0.00 0.00 4.45
133 134 4.371786 TCTAGAATAAATGCGAGCACCAG 58.628 43.478 0.00 0.00 0.00 4.00
134 135 4.400529 TCTAGAATAAATGCGAGCACCA 57.599 40.909 0.00 0.00 0.00 4.17
135 136 5.931441 AATCTAGAATAAATGCGAGCACC 57.069 39.130 0.00 0.00 0.00 5.01
136 137 9.884465 AAATAAATCTAGAATAAATGCGAGCAC 57.116 29.630 0.00 0.00 0.00 4.40
155 156 8.745837 CGCATCGCTGAAAATTCTAAAATAAAT 58.254 29.630 0.00 0.00 0.00 1.40
156 157 8.103101 CGCATCGCTGAAAATTCTAAAATAAA 57.897 30.769 0.00 0.00 0.00 1.40
157 158 7.663630 CGCATCGCTGAAAATTCTAAAATAA 57.336 32.000 0.00 0.00 0.00 1.40
175 176 3.853330 CCCACTGAACGCGCATCG 61.853 66.667 5.73 4.51 45.38 3.84
176 177 1.970917 CTTCCCACTGAACGCGCATC 61.971 60.000 5.73 5.66 0.00 3.91
177 178 2.031919 TTCCCACTGAACGCGCAT 59.968 55.556 5.73 0.00 0.00 4.73
178 179 2.664851 CTTCCCACTGAACGCGCA 60.665 61.111 5.73 0.00 0.00 6.09
179 180 3.423154 CCTTCCCACTGAACGCGC 61.423 66.667 5.73 0.00 0.00 6.86
180 181 0.882927 TTTCCTTCCCACTGAACGCG 60.883 55.000 3.53 3.53 0.00 6.01
181 182 0.591659 GTTTCCTTCCCACTGAACGC 59.408 55.000 0.00 0.00 0.00 4.84
182 183 0.865769 CGTTTCCTTCCCACTGAACG 59.134 55.000 0.00 0.00 0.00 3.95
183 184 1.963172 ACGTTTCCTTCCCACTGAAC 58.037 50.000 0.00 0.00 0.00 3.18
184 185 2.567985 GAACGTTTCCTTCCCACTGAA 58.432 47.619 0.46 0.00 0.00 3.02
185 186 1.202722 GGAACGTTTCCTTCCCACTGA 60.203 52.381 0.46 0.00 46.57 3.41
186 187 1.235724 GGAACGTTTCCTTCCCACTG 58.764 55.000 0.46 0.00 46.57 3.66
187 188 3.719816 GGAACGTTTCCTTCCCACT 57.280 52.632 0.46 0.00 46.57 4.00
201 202 1.653151 GCCTCATAGTCAACGGGAAC 58.347 55.000 0.00 0.00 0.00 3.62
202 203 0.174845 CGCCTCATAGTCAACGGGAA 59.825 55.000 0.00 0.00 0.00 3.97
203 204 1.813859 CGCCTCATAGTCAACGGGA 59.186 57.895 0.00 0.00 0.00 5.14
204 205 1.883084 GCGCCTCATAGTCAACGGG 60.883 63.158 0.00 0.00 0.00 5.28
205 206 1.883084 GGCGCCTCATAGTCAACGG 60.883 63.158 22.15 0.00 0.00 4.44
206 207 0.384309 TAGGCGCCTCATAGTCAACG 59.616 55.000 36.73 0.00 0.00 4.10
207 208 1.136305 TGTAGGCGCCTCATAGTCAAC 59.864 52.381 36.73 23.30 0.00 3.18
208 209 1.480789 TGTAGGCGCCTCATAGTCAA 58.519 50.000 36.73 10.36 0.00 3.18
209 210 1.480789 TTGTAGGCGCCTCATAGTCA 58.519 50.000 36.73 19.56 0.00 3.41
210 211 2.035961 TCATTGTAGGCGCCTCATAGTC 59.964 50.000 36.73 17.21 0.00 2.59
211 212 2.039418 TCATTGTAGGCGCCTCATAGT 58.961 47.619 36.73 14.50 0.00 2.12
212 213 2.036475 AGTCATTGTAGGCGCCTCATAG 59.964 50.000 36.73 22.54 0.00 2.23
213 214 2.039418 AGTCATTGTAGGCGCCTCATA 58.961 47.619 36.73 19.65 0.00 2.15
214 215 0.833287 AGTCATTGTAGGCGCCTCAT 59.167 50.000 36.73 20.91 0.00 2.90
215 216 0.613260 AAGTCATTGTAGGCGCCTCA 59.387 50.000 36.73 26.76 0.00 3.86
216 217 1.398390 CAAAGTCATTGTAGGCGCCTC 59.602 52.381 36.73 24.38 34.16 4.70
217 218 1.453155 CAAAGTCATTGTAGGCGCCT 58.547 50.000 34.85 34.85 34.16 5.52
218 219 3.996825 CAAAGTCATTGTAGGCGCC 57.003 52.632 21.89 21.89 34.16 6.53
225 226 9.903682 CATCTTGAGATTTTACAAAGTCATTGT 57.096 29.630 0.00 0.00 43.00 2.71
234 235 8.843262 CCAGCATATCATCTTGAGATTTTACAA 58.157 33.333 0.00 0.00 31.21 2.41
235 236 7.040892 GCCAGCATATCATCTTGAGATTTTACA 60.041 37.037 0.00 0.00 31.21 2.41
236 237 7.174599 AGCCAGCATATCATCTTGAGATTTTAC 59.825 37.037 0.00 0.00 31.21 2.01
237 238 7.229308 AGCCAGCATATCATCTTGAGATTTTA 58.771 34.615 0.00 0.00 31.21 1.52
238 239 6.069331 AGCCAGCATATCATCTTGAGATTTT 58.931 36.000 0.00 0.00 31.21 1.82
239 240 5.632118 AGCCAGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
240 241 5.221864 TGAGCCAGCATATCATCTTGAGATT 60.222 40.000 0.00 0.00 31.21 2.40
241 242 4.286291 TGAGCCAGCATATCATCTTGAGAT 59.714 41.667 0.00 0.00 34.56 2.75
242 243 3.644738 TGAGCCAGCATATCATCTTGAGA 59.355 43.478 0.00 0.00 0.00 3.27
243 244 3.997681 CTGAGCCAGCATATCATCTTGAG 59.002 47.826 0.00 0.00 0.00 3.02
244 245 3.390311 ACTGAGCCAGCATATCATCTTGA 59.610 43.478 2.50 0.00 34.37 3.02
245 246 3.741249 ACTGAGCCAGCATATCATCTTG 58.259 45.455 2.50 0.00 34.37 3.02
246 247 3.647113 AGACTGAGCCAGCATATCATCTT 59.353 43.478 2.50 0.00 34.37 2.40
247 248 3.241156 AGACTGAGCCAGCATATCATCT 58.759 45.455 2.50 0.00 34.37 2.90
248 249 3.258872 AGAGACTGAGCCAGCATATCATC 59.741 47.826 2.50 0.00 34.37 2.92
249 250 3.241156 AGAGACTGAGCCAGCATATCAT 58.759 45.455 2.50 0.00 34.37 2.45
250 251 2.675583 AGAGACTGAGCCAGCATATCA 58.324 47.619 2.50 0.00 34.37 2.15
251 252 3.069300 TCAAGAGACTGAGCCAGCATATC 59.931 47.826 2.50 0.00 34.37 1.63
252 253 3.036819 TCAAGAGACTGAGCCAGCATAT 58.963 45.455 2.50 0.00 34.37 1.78
253 254 2.460669 TCAAGAGACTGAGCCAGCATA 58.539 47.619 2.50 0.00 34.37 3.14
254 255 1.273759 TCAAGAGACTGAGCCAGCAT 58.726 50.000 2.50 0.00 34.37 3.79
255 256 1.001746 CTTCAAGAGACTGAGCCAGCA 59.998 52.381 2.50 0.00 34.37 4.41
256 257 1.675415 CCTTCAAGAGACTGAGCCAGC 60.675 57.143 2.50 0.00 34.37 4.85
257 258 1.622811 ACCTTCAAGAGACTGAGCCAG 59.377 52.381 1.16 1.16 37.52 4.85
258 259 1.345741 CACCTTCAAGAGACTGAGCCA 59.654 52.381 0.00 0.00 0.00 4.75
259 260 1.338579 CCACCTTCAAGAGACTGAGCC 60.339 57.143 0.00 0.00 0.00 4.70
260 261 1.346068 ACCACCTTCAAGAGACTGAGC 59.654 52.381 0.00 0.00 0.00 4.26
261 262 2.869636 GCACCACCTTCAAGAGACTGAG 60.870 54.545 0.00 0.00 0.00 3.35
262 263 1.070758 GCACCACCTTCAAGAGACTGA 59.929 52.381 0.00 0.00 0.00 3.41
263 264 1.071385 AGCACCACCTTCAAGAGACTG 59.929 52.381 0.00 0.00 0.00 3.51
264 265 1.346068 GAGCACCACCTTCAAGAGACT 59.654 52.381 0.00 0.00 0.00 3.24
265 266 1.070758 TGAGCACCACCTTCAAGAGAC 59.929 52.381 0.00 0.00 0.00 3.36
266 267 1.423584 TGAGCACCACCTTCAAGAGA 58.576 50.000 0.00 0.00 0.00 3.10
267 268 2.486472 ATGAGCACCACCTTCAAGAG 57.514 50.000 0.00 0.00 0.00 2.85
268 269 4.041567 TCTTTATGAGCACCACCTTCAAGA 59.958 41.667 0.00 0.00 0.00 3.02
269 270 4.326826 TCTTTATGAGCACCACCTTCAAG 58.673 43.478 0.00 0.00 0.00 3.02
270 271 4.365514 TCTTTATGAGCACCACCTTCAA 57.634 40.909 0.00 0.00 0.00 2.69
271 272 4.326826 CTTCTTTATGAGCACCACCTTCA 58.673 43.478 0.00 0.00 0.00 3.02
272 273 3.691609 CCTTCTTTATGAGCACCACCTTC 59.308 47.826 0.00 0.00 0.00 3.46
273 274 3.562176 CCCTTCTTTATGAGCACCACCTT 60.562 47.826 0.00 0.00 0.00 3.50
274 275 2.025887 CCCTTCTTTATGAGCACCACCT 60.026 50.000 0.00 0.00 0.00 4.00
275 276 2.290960 ACCCTTCTTTATGAGCACCACC 60.291 50.000 0.00 0.00 0.00 4.61
276 277 2.749621 CACCCTTCTTTATGAGCACCAC 59.250 50.000 0.00 0.00 0.00 4.16
277 278 2.375174 ACACCCTTCTTTATGAGCACCA 59.625 45.455 0.00 0.00 0.00 4.17
278 279 2.749621 CACACCCTTCTTTATGAGCACC 59.250 50.000 0.00 0.00 0.00 5.01
279 280 2.162408 GCACACCCTTCTTTATGAGCAC 59.838 50.000 0.00 0.00 0.00 4.40
280 281 2.436417 GCACACCCTTCTTTATGAGCA 58.564 47.619 0.00 0.00 0.00 4.26
281 282 1.398390 CGCACACCCTTCTTTATGAGC 59.602 52.381 0.00 0.00 0.00 4.26
282 283 2.416547 CACGCACACCCTTCTTTATGAG 59.583 50.000 0.00 0.00 0.00 2.90
283 284 2.224426 ACACGCACACCCTTCTTTATGA 60.224 45.455 0.00 0.00 0.00 2.15
284 285 2.095768 CACACGCACACCCTTCTTTATG 60.096 50.000 0.00 0.00 0.00 1.90
285 286 2.151202 CACACGCACACCCTTCTTTAT 58.849 47.619 0.00 0.00 0.00 1.40
286 287 1.134340 ACACACGCACACCCTTCTTTA 60.134 47.619 0.00 0.00 0.00 1.85
287 288 0.393808 ACACACGCACACCCTTCTTT 60.394 50.000 0.00 0.00 0.00 2.52
288 289 1.095228 CACACACGCACACCCTTCTT 61.095 55.000 0.00 0.00 0.00 2.52
289 290 1.523711 CACACACGCACACCCTTCT 60.524 57.895 0.00 0.00 0.00 2.85
290 291 3.022287 CACACACGCACACCCTTC 58.978 61.111 0.00 0.00 0.00 3.46
291 292 3.209097 GCACACACGCACACCCTT 61.209 61.111 0.00 0.00 0.00 3.95
294 295 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
295 296 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
296 297 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
297 298 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
298 299 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
299 300 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
300 301 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
301 302 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
302 303 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
303 304 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
304 305 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
305 306 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
306 307 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
307 308 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
308 309 4.974275 CGTATACACTCACCCTTATGAACG 59.026 45.833 3.32 0.00 0.00 3.95
309 310 5.747197 CACGTATACACTCACCCTTATGAAC 59.253 44.000 3.32 0.00 0.00 3.18
310 311 5.419788 ACACGTATACACTCACCCTTATGAA 59.580 40.000 3.32 0.00 0.00 2.57
311 312 4.951715 ACACGTATACACTCACCCTTATGA 59.048 41.667 3.32 0.00 0.00 2.15
312 313 5.258456 ACACGTATACACTCACCCTTATG 57.742 43.478 3.32 0.00 0.00 1.90
313 314 8.874744 ATATACACGTATACACTCACCCTTAT 57.125 34.615 3.32 0.00 31.52 1.73
314 315 9.964354 ATATATACACGTATACACTCACCCTTA 57.036 33.333 3.32 0.00 31.52 2.69
315 316 8.874744 ATATATACACGTATACACTCACCCTT 57.125 34.615 3.32 0.00 31.52 3.95
321 322 9.794653 CGCTCATATATATACACGTATACACTC 57.205 37.037 3.32 0.00 31.52 3.51
322 323 8.771766 CCGCTCATATATATACACGTATACACT 58.228 37.037 3.32 0.00 31.52 3.55
323 324 8.554528 ACCGCTCATATATATACACGTATACAC 58.445 37.037 3.32 0.00 31.52 2.90
324 325 8.667076 ACCGCTCATATATATACACGTATACA 57.333 34.615 3.32 0.00 31.52 2.29
325 326 9.378597 CAACCGCTCATATATATACACGTATAC 57.621 37.037 0.00 0.00 31.52 1.47
326 327 9.112725 ACAACCGCTCATATATATACACGTATA 57.887 33.333 0.00 0.00 33.09 1.47
327 328 7.913821 CACAACCGCTCATATATATACACGTAT 59.086 37.037 0.00 0.00 0.00 3.06
328 329 7.094677 ACACAACCGCTCATATATATACACGTA 60.095 37.037 0.00 0.00 0.00 3.57
329 330 6.090783 CACAACCGCTCATATATATACACGT 58.909 40.000 0.00 0.00 0.00 4.49
330 331 6.090783 ACACAACCGCTCATATATATACACG 58.909 40.000 0.00 0.00 0.00 4.49
331 332 7.884816 AACACAACCGCTCATATATATACAC 57.115 36.000 0.00 0.00 0.00 2.90
332 333 7.929245 ACAAACACAACCGCTCATATATATACA 59.071 33.333 0.00 0.00 0.00 2.29
333 334 8.306680 ACAAACACAACCGCTCATATATATAC 57.693 34.615 0.00 0.00 0.00 1.47
334 335 9.414295 GTACAAACACAACCGCTCATATATATA 57.586 33.333 0.00 0.00 0.00 0.86
335 336 7.386848 GGTACAAACACAACCGCTCATATATAT 59.613 37.037 0.00 0.00 0.00 0.86
336 337 6.702723 GGTACAAACACAACCGCTCATATATA 59.297 38.462 0.00 0.00 0.00 0.86
337 338 5.526111 GGTACAAACACAACCGCTCATATAT 59.474 40.000 0.00 0.00 0.00 0.86
338 339 4.871557 GGTACAAACACAACCGCTCATATA 59.128 41.667 0.00 0.00 0.00 0.86
339 340 3.687698 GGTACAAACACAACCGCTCATAT 59.312 43.478 0.00 0.00 0.00 1.78
340 341 3.068560 GGTACAAACACAACCGCTCATA 58.931 45.455 0.00 0.00 0.00 2.15
341 342 1.877443 GGTACAAACACAACCGCTCAT 59.123 47.619 0.00 0.00 0.00 2.90
342 343 1.301423 GGTACAAACACAACCGCTCA 58.699 50.000 0.00 0.00 0.00 4.26
347 348 4.612932 TTAACACGGTACAAACACAACC 57.387 40.909 0.00 0.00 0.00 3.77
348 349 6.581919 ACTTTTTAACACGGTACAAACACAAC 59.418 34.615 0.00 0.00 0.00 3.32
349 350 6.581542 CACTTTTTAACACGGTACAAACACAA 59.418 34.615 0.00 0.00 0.00 3.33
350 351 6.084925 CACTTTTTAACACGGTACAAACACA 58.915 36.000 0.00 0.00 0.00 3.72
351 352 6.085573 ACACTTTTTAACACGGTACAAACAC 58.914 36.000 0.00 0.00 0.00 3.32
352 353 6.251655 ACACTTTTTAACACGGTACAAACA 57.748 33.333 0.00 0.00 0.00 2.83
353 354 6.800892 TGAACACTTTTTAACACGGTACAAAC 59.199 34.615 0.00 0.00 0.00 2.93
354 355 6.906659 TGAACACTTTTTAACACGGTACAAA 58.093 32.000 0.00 0.00 0.00 2.83
355 356 6.403418 CCTGAACACTTTTTAACACGGTACAA 60.403 38.462 0.00 0.00 0.00 2.41
356 357 5.064962 CCTGAACACTTTTTAACACGGTACA 59.935 40.000 0.00 0.00 0.00 2.90
357 358 5.504392 CCTGAACACTTTTTAACACGGTAC 58.496 41.667 0.00 0.00 0.00 3.34
358 359 4.035441 GCCTGAACACTTTTTAACACGGTA 59.965 41.667 0.00 0.00 0.00 4.02
359 360 3.181494 GCCTGAACACTTTTTAACACGGT 60.181 43.478 0.00 0.00 0.00 4.83
360 361 3.181495 TGCCTGAACACTTTTTAACACGG 60.181 43.478 0.00 0.00 0.00 4.94
361 362 4.022464 TGCCTGAACACTTTTTAACACG 57.978 40.909 0.00 0.00 0.00 4.49
362 363 6.713792 TTTTGCCTGAACACTTTTTAACAC 57.286 33.333 0.00 0.00 0.00 3.32
363 364 6.706270 TGTTTTTGCCTGAACACTTTTTAACA 59.294 30.769 0.00 0.00 31.30 2.41
364 365 7.123160 TGTTTTTGCCTGAACACTTTTTAAC 57.877 32.000 0.00 0.00 31.30 2.01
365 366 7.730364 TTGTTTTTGCCTGAACACTTTTTAA 57.270 28.000 0.00 0.00 35.66 1.52
366 367 7.730364 TTTGTTTTTGCCTGAACACTTTTTA 57.270 28.000 0.00 0.00 35.66 1.52
367 368 6.625873 TTTGTTTTTGCCTGAACACTTTTT 57.374 29.167 0.00 0.00 35.66 1.94
368 369 6.625873 TTTTGTTTTTGCCTGAACACTTTT 57.374 29.167 0.00 0.00 35.66 2.27
369 370 6.038714 TGTTTTTGTTTTTGCCTGAACACTTT 59.961 30.769 0.00 0.00 35.66 2.66
370 371 5.529060 TGTTTTTGTTTTTGCCTGAACACTT 59.471 32.000 0.00 0.00 35.66 3.16
371 372 5.059833 TGTTTTTGTTTTTGCCTGAACACT 58.940 33.333 0.00 0.00 35.66 3.55
372 373 5.349824 TGTTTTTGTTTTTGCCTGAACAC 57.650 34.783 0.00 0.00 35.66 3.32
373 374 6.377327 TTTGTTTTTGTTTTTGCCTGAACA 57.623 29.167 0.00 0.00 34.22 3.18
374 375 7.220875 TGTTTTTGTTTTTGTTTTTGCCTGAAC 59.779 29.630 0.00 0.00 0.00 3.18
375 376 7.257722 TGTTTTTGTTTTTGTTTTTGCCTGAA 58.742 26.923 0.00 0.00 0.00 3.02
376 377 6.795399 TGTTTTTGTTTTTGTTTTTGCCTGA 58.205 28.000 0.00 0.00 0.00 3.86
377 378 7.455331 TTGTTTTTGTTTTTGTTTTTGCCTG 57.545 28.000 0.00 0.00 0.00 4.85
378 379 8.479313 TTTTGTTTTTGTTTTTGTTTTTGCCT 57.521 23.077 0.00 0.00 0.00 4.75
379 380 9.708222 ATTTTTGTTTTTGTTTTTGTTTTTGCC 57.292 22.222 0.00 0.00 0.00 4.52
397 398 9.589111 ACACTTGTCCGTATTTTTATTTTTGTT 57.411 25.926 0.00 0.00 0.00 2.83
398 399 9.026074 CACACTTGTCCGTATTTTTATTTTTGT 57.974 29.630 0.00 0.00 0.00 2.83
399 400 8.484008 CCACACTTGTCCGTATTTTTATTTTTG 58.516 33.333 0.00 0.00 0.00 2.44
400 401 8.414778 TCCACACTTGTCCGTATTTTTATTTTT 58.585 29.630 0.00 0.00 0.00 1.94
401 402 7.942990 TCCACACTTGTCCGTATTTTTATTTT 58.057 30.769 0.00 0.00 0.00 1.82
402 403 7.308951 CCTCCACACTTGTCCGTATTTTTATTT 60.309 37.037 0.00 0.00 0.00 1.40
403 404 6.150474 CCTCCACACTTGTCCGTATTTTTATT 59.850 38.462 0.00 0.00 0.00 1.40
404 405 5.646360 CCTCCACACTTGTCCGTATTTTTAT 59.354 40.000 0.00 0.00 0.00 1.40
405 406 4.998672 CCTCCACACTTGTCCGTATTTTTA 59.001 41.667 0.00 0.00 0.00 1.52
406 407 3.818773 CCTCCACACTTGTCCGTATTTTT 59.181 43.478 0.00 0.00 0.00 1.94
407 408 3.408634 CCTCCACACTTGTCCGTATTTT 58.591 45.455 0.00 0.00 0.00 1.82
408 409 2.874457 GCCTCCACACTTGTCCGTATTT 60.874 50.000 0.00 0.00 0.00 1.40
409 410 1.338769 GCCTCCACACTTGTCCGTATT 60.339 52.381 0.00 0.00 0.00 1.89
410 411 0.249398 GCCTCCACACTTGTCCGTAT 59.751 55.000 0.00 0.00 0.00 3.06
411 412 1.116536 TGCCTCCACACTTGTCCGTA 61.117 55.000 0.00 0.00 0.00 4.02
412 413 2.383245 CTGCCTCCACACTTGTCCGT 62.383 60.000 0.00 0.00 0.00 4.69
413 414 1.669115 CTGCCTCCACACTTGTCCG 60.669 63.158 0.00 0.00 0.00 4.79
414 415 1.968540 GCTGCCTCCACACTTGTCC 60.969 63.158 0.00 0.00 0.00 4.02
415 416 2.320587 CGCTGCCTCCACACTTGTC 61.321 63.158 0.00 0.00 0.00 3.18
416 417 2.281070 CGCTGCCTCCACACTTGT 60.281 61.111 0.00 0.00 0.00 3.16
417 418 2.031012 TCGCTGCCTCCACACTTG 59.969 61.111 0.00 0.00 0.00 3.16
418 419 2.345244 CTCGCTGCCTCCACACTT 59.655 61.111 0.00 0.00 0.00 3.16
419 420 4.385405 GCTCGCTGCCTCCACACT 62.385 66.667 0.00 0.00 35.15 3.55
422 423 4.129737 TACGCTCGCTGCCTCCAC 62.130 66.667 0.00 0.00 38.78 4.02
423 424 3.826754 CTACGCTCGCTGCCTCCA 61.827 66.667 0.00 0.00 38.78 3.86
424 425 2.356818 ATTCTACGCTCGCTGCCTCC 62.357 60.000 0.00 0.00 38.78 4.30
425 426 0.528684 AATTCTACGCTCGCTGCCTC 60.529 55.000 0.00 0.00 38.78 4.70
426 427 0.807667 CAATTCTACGCTCGCTGCCT 60.808 55.000 0.00 0.00 38.78 4.75
427 428 0.806102 TCAATTCTACGCTCGCTGCC 60.806 55.000 0.00 0.00 38.78 4.85
428 429 0.999406 TTCAATTCTACGCTCGCTGC 59.001 50.000 0.00 0.00 38.57 5.25
429 430 3.426859 CCTATTCAATTCTACGCTCGCTG 59.573 47.826 0.00 0.00 0.00 5.18
503 1580 2.257067 TCGCTCGTGTTGATGCGA 59.743 55.556 4.79 4.79 44.83 5.10
504 1581 1.123217 GATATCGCTCGTGTTGATGCG 59.877 52.381 0.00 0.00 42.05 4.73
505 1582 1.123217 CGATATCGCTCGTGTTGATGC 59.877 52.381 12.95 0.00 34.00 3.91
546 1624 3.727673 CGCACTCACGGGAATGTATTTTG 60.728 47.826 0.00 0.00 0.00 2.44
557 1635 2.655364 CGCTATCGCACTCACGGG 60.655 66.667 0.00 0.00 35.30 5.28
643 1721 2.031919 TCGCCCGCAACAATGTCT 59.968 55.556 0.00 0.00 0.00 3.41
692 1770 2.717485 GCGGCATGCACCAGTATG 59.283 61.111 21.36 0.00 45.45 2.39
808 1886 2.425592 CTGGTTGGTGTCGCCTCA 59.574 61.111 3.62 0.00 38.35 3.86
824 1909 2.495084 GACGAAAACAAAGAGGGAGCT 58.505 47.619 0.00 0.00 0.00 4.09
825 1910 1.535896 GGACGAAAACAAAGAGGGAGC 59.464 52.381 0.00 0.00 0.00 4.70
827 1912 2.567985 GTGGACGAAAACAAAGAGGGA 58.432 47.619 0.00 0.00 0.00 4.20
857 1943 3.857854 GCAGGCGATGTGTCAGCG 61.858 66.667 3.06 3.06 46.35 5.18
904 2017 3.089573 GTACTTATAGTGCCACCCGAC 57.910 52.381 0.00 0.00 0.00 4.79
921 2034 2.098298 CATGCAACGCAGCGGTAC 59.902 61.111 21.15 8.21 43.65 3.34
958 2071 2.886081 CTGCTATGTCTCCAGTGTCAC 58.114 52.381 0.00 0.00 0.00 3.67
1105 2218 4.477975 GTCGTCGTCGGCCCAGAG 62.478 72.222 0.00 0.00 35.48 3.35
1149 2265 1.009900 CTCGGAGTACGTGATCGCC 60.010 63.158 0.00 0.00 44.69 5.54
1481 2600 2.995872 GCCTCTCGTTCGTCCAGCT 61.996 63.158 0.00 0.00 0.00 4.24
1674 2793 2.887568 GGCAGCCACGAGACGATG 60.888 66.667 6.55 0.00 0.00 3.84
1732 2851 4.778143 GGTGGCGCCGGAGACAAT 62.778 66.667 18.06 0.00 0.00 2.71
1800 2919 0.735471 TGAACTCGGAGATGAGCTCG 59.265 55.000 12.86 0.00 44.91 5.03
2117 3248 0.667487 CGACGGCAGAAGCTTCTTGA 60.667 55.000 26.44 0.00 41.70 3.02
2376 3513 1.341531 ACATACAGATACCGCTCTGGC 59.658 52.381 5.76 0.00 45.67 4.85
2379 3516 2.548904 GACGACATACAGATACCGCTCT 59.451 50.000 0.00 0.00 0.00 4.09
2496 3633 2.514592 GCAATGCAGCCGCCTCTA 60.515 61.111 0.00 0.00 37.32 2.43
2616 3753 3.395702 ACCGACCGCCTTATGCCA 61.396 61.111 0.00 0.00 36.24 4.92
2631 3768 3.920093 CTTTCCCGCCTCCCACACC 62.920 68.421 0.00 0.00 0.00 4.16
2645 3782 0.605589 CCGACCAACCCTCACCTTTC 60.606 60.000 0.00 0.00 0.00 2.62
2648 3785 2.390777 TACCCGACCAACCCTCACCT 62.391 60.000 0.00 0.00 0.00 4.00
2667 3804 2.345244 CCGCTCTGGACAAGCAGT 59.655 61.111 0.00 0.00 42.00 4.40
2668 3805 3.123620 GCCGCTCTGGACAAGCAG 61.124 66.667 0.00 0.00 42.00 4.24
2730 3867 2.665603 GCGACCAGCTTCTCCCTT 59.334 61.111 0.00 0.00 44.04 3.95
2818 3955 2.017049 CATTTCCCCATCTTCGTCACC 58.983 52.381 0.00 0.00 0.00 4.02
2832 3969 1.680249 GCACACCTCTCCTCCATTTCC 60.680 57.143 0.00 0.00 0.00 3.13
2856 3993 1.446791 CTCTCCTGCCATCCAGCTC 59.553 63.158 0.00 0.00 40.36 4.09
2888 4025 1.819632 CCTAAGGTCGTGGCCATGC 60.820 63.158 20.86 14.69 0.00 4.06
2899 4036 2.356667 GCAGCTTGCCCCTAAGGT 59.643 61.111 0.00 0.00 37.42 3.50
2914 4054 2.031044 GATTGCACGCGAATACGGCA 62.031 55.000 15.93 9.65 40.15 5.69
2920 4060 0.796312 AGAAACGATTGCACGCGAAT 59.204 45.000 15.93 0.98 36.70 3.34
2955 4095 1.136305 CCCCACATCCTACTACACACG 59.864 57.143 0.00 0.00 0.00 4.49
2971 4122 2.436173 GACAAAACCAAACCATTCCCCA 59.564 45.455 0.00 0.00 0.00 4.96
2972 4123 2.703536 AGACAAAACCAAACCATTCCCC 59.296 45.455 0.00 0.00 0.00 4.81
2973 4124 4.126437 CAAGACAAAACCAAACCATTCCC 58.874 43.478 0.00 0.00 0.00 3.97
2979 4130 3.878160 TCACCAAGACAAAACCAAACC 57.122 42.857 0.00 0.00 0.00 3.27
3017 4172 2.452600 TGGCAAAAAGGGAGAGTTGT 57.547 45.000 0.00 0.00 0.00 3.32
3020 4175 2.683211 ACATGGCAAAAAGGGAGAGT 57.317 45.000 0.00 0.00 0.00 3.24
3048 4205 5.114081 CCTTACGACATATTTTTCGGGACT 58.886 41.667 0.00 0.00 39.63 3.85
3060 4217 7.450124 TTTGTAAAATTGCCCTTACGACATA 57.550 32.000 0.00 0.00 31.84 2.29
3407 4570 3.637273 GGGTTGGTCGCTGGAGGT 61.637 66.667 0.00 0.00 0.00 3.85
3883 6151 7.172703 GTCAGGTTGTTGTAACATAGCTAGTTT 59.827 37.037 11.97 4.81 38.95 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.