Multiple sequence alignment - TraesCS1A01G418000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G418000 chr1A 100.000 5194 0 0 1 5194 575598778 575593585 0.000000e+00 9592.0
1 TraesCS1A01G418000 chr1A 93.103 58 3 1 702 759 284324738 284324794 3.330000e-12 84.2
2 TraesCS1A01G418000 chr1B 88.671 2595 172 60 1742 4295 667493541 667491028 0.000000e+00 3051.0
3 TraesCS1A01G418000 chr1B 87.165 522 34 14 757 1273 667494638 667494145 3.510000e-156 562.0
4 TraesCS1A01G418000 chr1B 84.989 453 26 21 3 431 667495393 667494959 6.220000e-114 422.0
5 TraesCS1A01G418000 chr1B 81.922 437 37 17 1289 1700 667494069 667493650 1.080000e-86 331.0
6 TraesCS1A01G418000 chr1B 86.364 264 17 8 432 695 667494875 667494631 2.380000e-68 270.0
7 TraesCS1A01G418000 chr1B 80.892 157 18 7 3 157 667505293 667505147 4.250000e-21 113.0
8 TraesCS1A01G418000 chr1B 96.154 52 2 0 707 758 51005011 51004960 9.270000e-13 86.1
9 TraesCS1A01G418000 chr1B 94.643 56 1 2 703 756 645257404 645257349 9.270000e-13 86.1
10 TraesCS1A01G418000 chr1B 97.368 38 1 0 1724 1761 667493593 667493556 1.210000e-06 65.8
11 TraesCS1A01G418000 chr1D 94.595 1739 61 15 2538 4248 479229783 479228050 0.000000e+00 2660.0
12 TraesCS1A01G418000 chr1D 94.698 679 30 4 4517 5194 479227737 479227064 0.000000e+00 1050.0
13 TraesCS1A01G418000 chr1D 87.615 654 51 14 1804 2443 479230416 479229779 0.000000e+00 732.0
14 TraesCS1A01G418000 chr1D 86.220 537 26 11 757 1273 479231582 479231074 5.920000e-149 538.0
15 TraesCS1A01G418000 chr1D 81.278 454 30 16 1271 1702 479231007 479230587 3.020000e-82 316.0
16 TraesCS1A01G418000 chr1D 85.135 222 9 9 4312 4510 479228044 479227824 6.820000e-49 206.0
17 TraesCS1A01G418000 chr1D 83.810 210 17 7 476 685 479231773 479231581 3.190000e-42 183.0
18 TraesCS1A01G418000 chr1D 81.529 157 13 6 3 157 479232037 479231895 1.180000e-21 115.0
19 TraesCS1A01G418000 chr1D 81.529 157 13 6 3 157 479318348 479318206 1.180000e-21 115.0
20 TraesCS1A01G418000 chr2B 77.536 552 87 24 4452 4978 186285870 186286409 1.090000e-76 298.0
21 TraesCS1A01G418000 chr2B 82.979 188 17 7 5005 5178 186286492 186286678 6.960000e-34 156.0
22 TraesCS1A01G418000 chr2A 76.122 557 83 30 4455 4978 138917351 138916812 4.020000e-61 246.0
23 TraesCS1A01G418000 chr2A 84.043 188 15 6 5005 5178 138916729 138916543 3.220000e-37 167.0
24 TraesCS1A01G418000 chr2A 96.774 62 2 0 696 757 384997640 384997701 2.560000e-18 104.0
25 TraesCS1A01G418000 chr2A 94.828 58 3 0 698 755 625087300 625087357 1.990000e-14 91.6
26 TraesCS1A01G418000 chr2D 85.106 188 13 6 5005 5178 132065950 132065764 1.490000e-40 178.0
27 TraesCS1A01G418000 chr2D 92.857 56 3 1 708 762 640023026 640022971 4.310000e-11 80.5
28 TraesCS1A01G418000 chr5A 96.774 62 2 0 696 757 613697326 613697387 2.560000e-18 104.0
29 TraesCS1A01G418000 chr3B 96.154 52 1 1 707 757 562783009 562783060 3.330000e-12 84.2
30 TraesCS1A01G418000 chr5D 96.078 51 1 1 708 757 233504755 233504805 1.200000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G418000 chr1A 575593585 575598778 5193 True 9592.000000 9592 100.0000 1 5194 1 chr1A.!!$R1 5193
1 TraesCS1A01G418000 chr1B 667491028 667495393 4365 True 783.633333 3051 87.7465 3 4295 6 chr1B.!!$R4 4292
2 TraesCS1A01G418000 chr1D 479227064 479232037 4973 True 725.000000 2660 86.8600 3 5194 8 chr1D.!!$R2 5191
3 TraesCS1A01G418000 chr2B 186285870 186286678 808 False 227.000000 298 80.2575 4452 5178 2 chr2B.!!$F1 726
4 TraesCS1A01G418000 chr2A 138916543 138917351 808 True 206.500000 246 80.0825 4455 5178 2 chr2A.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 949 0.038310 CCAGAACCAGAACCCCTTCC 59.962 60.0 0.00 0.0 0.0 3.46 F
1456 1701 0.182061 AGTATGCTGCAGGGACATGG 59.818 55.0 17.12 0.0 0.0 3.66 F
2632 2998 0.254462 TGGCTACATTCCAATCGGCA 59.746 50.0 0.00 0.0 0.0 5.69 F
3941 4332 1.019278 CGGTTTCAGGCGTGCAGTAT 61.019 55.0 0.35 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 2823 0.390340 TGTCGAGAATGCTCTGGTGC 60.390 55.0 0.0 0.0 39.06 5.01 R
3228 3594 0.684479 CAGGGGACGAGATGGTCAGA 60.684 60.0 0.0 0.0 38.70 3.27 R
4049 4440 0.037326 ATGTGTGGTACTGAGGCACG 60.037 55.0 0.0 0.0 33.23 5.34 R
5071 5665 0.036732 CAGACCCAAGGTGCTGCTAA 59.963 55.0 0.0 0.0 35.25 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 4.513442 GTGGATCCACACATAGTTAAGCA 58.487 43.478 35.21 0.00 45.53 3.91
98 99 5.685520 TCCACACATAGTTAAGCACCATA 57.314 39.130 0.00 0.00 0.00 2.74
99 100 6.247229 TCCACACATAGTTAAGCACCATAT 57.753 37.500 0.00 0.00 0.00 1.78
100 101 7.368198 TCCACACATAGTTAAGCACCATATA 57.632 36.000 0.00 0.00 0.00 0.86
101 102 7.973402 TCCACACATAGTTAAGCACCATATAT 58.027 34.615 0.00 0.00 0.00 0.86
102 103 9.095700 TCCACACATAGTTAAGCACCATATATA 57.904 33.333 0.00 0.00 0.00 0.86
103 104 9.151471 CCACACATAGTTAAGCACCATATATAC 57.849 37.037 0.00 0.00 0.00 1.47
104 105 9.151471 CACACATAGTTAAGCACCATATATACC 57.849 37.037 0.00 0.00 0.00 2.73
105 106 8.033038 ACACATAGTTAAGCACCATATATACCG 58.967 37.037 0.00 0.00 0.00 4.02
106 107 8.248253 CACATAGTTAAGCACCATATATACCGA 58.752 37.037 0.00 0.00 0.00 4.69
128 129 1.946768 CCGAACTTGTGGTCACATTGT 59.053 47.619 4.53 4.84 41.52 2.71
130 131 3.362295 CGAACTTGTGGTCACATTGTTG 58.638 45.455 19.57 12.21 41.52 3.33
131 132 2.869233 ACTTGTGGTCACATTGTTGC 57.131 45.000 4.53 0.00 41.52 4.17
132 133 2.098614 ACTTGTGGTCACATTGTTGCA 58.901 42.857 4.53 0.00 41.52 4.08
134 135 2.867287 TGTGGTCACATTGTTGCAAG 57.133 45.000 0.00 0.00 36.21 4.01
135 136 2.098614 TGTGGTCACATTGTTGCAAGT 58.901 42.857 0.00 0.00 36.21 3.16
136 137 2.495270 TGTGGTCACATTGTTGCAAGTT 59.505 40.909 0.00 0.00 36.21 2.66
158 161 3.056107 TCTCCAAAGAATACCCTGACACG 60.056 47.826 0.00 0.00 0.00 4.49
175 178 1.010935 ACGCACGATGACAGCAGAAG 61.011 55.000 0.00 0.00 0.00 2.85
226 266 5.474578 ACTCATTCTGTCTCTGCACTAAA 57.525 39.130 0.00 0.00 0.00 1.85
227 267 5.233988 ACTCATTCTGTCTCTGCACTAAAC 58.766 41.667 0.00 0.00 0.00 2.01
228 268 5.011533 ACTCATTCTGTCTCTGCACTAAACT 59.988 40.000 0.00 0.00 0.00 2.66
249 289 0.108329 CTAGTGGCAAACGGGTCGAT 60.108 55.000 0.00 0.00 0.00 3.59
287 327 9.736023 GATTATTATTTTTAGGAACAGGCACAG 57.264 33.333 0.00 0.00 0.00 3.66
293 333 2.595463 GAACAGGCACAGGCAGCA 60.595 61.111 0.00 0.00 43.71 4.41
297 337 3.654143 AGGCACAGGCAGCATCCA 61.654 61.111 0.00 0.00 43.71 3.41
298 338 2.677524 GGCACAGGCAGCATCCAA 60.678 61.111 0.00 0.00 43.71 3.53
304 344 2.756760 CACAGGCAGCATCCAACTTTAT 59.243 45.455 0.00 0.00 0.00 1.40
305 345 3.947196 CACAGGCAGCATCCAACTTTATA 59.053 43.478 0.00 0.00 0.00 0.98
306 346 4.398988 CACAGGCAGCATCCAACTTTATAA 59.601 41.667 0.00 0.00 0.00 0.98
307 347 5.068198 CACAGGCAGCATCCAACTTTATAAT 59.932 40.000 0.00 0.00 0.00 1.28
308 348 6.262944 CACAGGCAGCATCCAACTTTATAATA 59.737 38.462 0.00 0.00 0.00 0.98
309 349 6.833416 ACAGGCAGCATCCAACTTTATAATAA 59.167 34.615 0.00 0.00 0.00 1.40
310 350 7.341769 ACAGGCAGCATCCAACTTTATAATAAA 59.658 33.333 0.00 0.00 0.00 1.40
311 351 8.362639 CAGGCAGCATCCAACTTTATAATAAAT 58.637 33.333 0.00 0.00 0.00 1.40
312 352 8.362639 AGGCAGCATCCAACTTTATAATAAATG 58.637 33.333 0.00 0.00 0.00 2.32
361 414 7.239763 TCACACATACCAAAGTCTGAAGATA 57.760 36.000 0.00 0.00 0.00 1.98
369 422 6.601332 ACCAAAGTCTGAAGATAAAACAGGA 58.399 36.000 0.00 0.00 33.19 3.86
370 423 6.712547 ACCAAAGTCTGAAGATAAAACAGGAG 59.287 38.462 0.00 0.00 33.19 3.69
371 424 6.712547 CCAAAGTCTGAAGATAAAACAGGAGT 59.287 38.462 0.00 0.00 33.19 3.85
372 425 7.308229 CCAAAGTCTGAAGATAAAACAGGAGTG 60.308 40.741 0.00 0.00 33.19 3.51
431 484 6.519679 TTGCAAGAGATACAGCAAAATGAT 57.480 33.333 0.00 0.00 43.24 2.45
432 485 5.886992 TGCAAGAGATACAGCAAAATGATG 58.113 37.500 0.00 0.00 40.09 3.07
433 486 5.648960 TGCAAGAGATACAGCAAAATGATGA 59.351 36.000 2.23 0.00 35.45 2.92
434 487 6.151480 TGCAAGAGATACAGCAAAATGATGAA 59.849 34.615 2.23 0.00 35.45 2.57
435 488 7.031372 GCAAGAGATACAGCAAAATGATGAAA 58.969 34.615 2.23 0.00 35.45 2.69
457 590 6.682423 AAAAACAAGAAAGCCCATTTGAAG 57.318 33.333 0.00 0.00 0.00 3.02
484 617 1.676248 TAGCAGGGTGGGGTACAAAT 58.324 50.000 0.00 0.00 0.00 2.32
507 640 2.440980 GATGCCACCTTCCTGCCC 60.441 66.667 0.00 0.00 0.00 5.36
508 641 4.066139 ATGCCACCTTCCTGCCCC 62.066 66.667 0.00 0.00 0.00 5.80
511 644 4.722700 CCACCTTCCTGCCCCGTG 62.723 72.222 0.00 0.00 0.00 4.94
512 645 3.636231 CACCTTCCTGCCCCGTGA 61.636 66.667 0.00 0.00 0.00 4.35
535 668 3.321111 CCGTGAGCCATTAGTACAGGTAT 59.679 47.826 0.00 0.00 0.00 2.73
536 669 4.521639 CCGTGAGCCATTAGTACAGGTATA 59.478 45.833 0.00 0.00 0.00 1.47
537 670 5.010314 CCGTGAGCCATTAGTACAGGTATAA 59.990 44.000 0.00 0.00 0.00 0.98
554 687 9.682465 ACAGGTATAAGCTACATTATCGATCTA 57.318 33.333 0.00 0.00 0.00 1.98
580 713 8.401490 ACATATTTCTTTCTGGATAATGGAGC 57.599 34.615 0.00 0.00 0.00 4.70
588 721 2.227388 CTGGATAATGGAGCGCAATTCC 59.773 50.000 11.47 8.99 35.20 3.01
589 722 2.158623 TGGATAATGGAGCGCAATTCCT 60.159 45.455 11.47 0.00 35.67 3.36
590 723 2.485814 GGATAATGGAGCGCAATTCCTC 59.514 50.000 11.47 1.28 35.67 3.71
591 724 1.967319 TAATGGAGCGCAATTCCTCC 58.033 50.000 11.47 7.24 46.25 4.30
626 759 3.312421 TCTCACGGAAAGAACAAAAGCAG 59.688 43.478 0.00 0.00 0.00 4.24
632 765 3.737774 GGAAAGAACAAAAGCAGCACATC 59.262 43.478 0.00 0.00 0.00 3.06
633 766 4.362279 GAAAGAACAAAAGCAGCACATCA 58.638 39.130 0.00 0.00 0.00 3.07
634 767 4.595762 AAGAACAAAAGCAGCACATCAT 57.404 36.364 0.00 0.00 0.00 2.45
637 770 4.038282 AGAACAAAAGCAGCACATCATGAA 59.962 37.500 0.00 0.00 0.00 2.57
661 794 1.602311 AAGAAGCTCTGTGCAGTTGG 58.398 50.000 4.39 0.00 45.94 3.77
662 795 0.761187 AGAAGCTCTGTGCAGTTGGA 59.239 50.000 4.39 0.00 45.94 3.53
695 828 3.009363 TCATCCATCCATTCATATGCCGT 59.991 43.478 0.00 0.00 0.00 5.68
696 829 4.224818 TCATCCATCCATTCATATGCCGTA 59.775 41.667 0.00 0.00 0.00 4.02
697 830 3.937814 TCCATCCATTCATATGCCGTAC 58.062 45.455 0.00 0.00 0.00 3.67
698 831 3.582647 TCCATCCATTCATATGCCGTACT 59.417 43.478 0.00 0.00 0.00 2.73
699 832 4.041567 TCCATCCATTCATATGCCGTACTT 59.958 41.667 0.00 0.00 0.00 2.24
700 833 5.247337 TCCATCCATTCATATGCCGTACTTA 59.753 40.000 0.00 0.00 0.00 2.24
701 834 5.582269 CCATCCATTCATATGCCGTACTTAG 59.418 44.000 0.00 0.00 0.00 2.18
702 835 4.566004 TCCATTCATATGCCGTACTTAGC 58.434 43.478 0.00 0.00 0.00 3.09
703 836 3.684788 CCATTCATATGCCGTACTTAGCC 59.315 47.826 0.00 0.00 0.00 3.93
704 837 4.563580 CCATTCATATGCCGTACTTAGCCT 60.564 45.833 0.00 0.00 0.00 4.58
705 838 4.682778 TTCATATGCCGTACTTAGCCTT 57.317 40.909 0.00 0.00 0.00 4.35
706 839 4.682778 TCATATGCCGTACTTAGCCTTT 57.317 40.909 0.00 0.00 0.00 3.11
707 840 5.031066 TCATATGCCGTACTTAGCCTTTT 57.969 39.130 0.00 0.00 0.00 2.27
708 841 5.433526 TCATATGCCGTACTTAGCCTTTTT 58.566 37.500 0.00 0.00 0.00 1.94
709 842 5.526111 TCATATGCCGTACTTAGCCTTTTTC 59.474 40.000 0.00 0.00 0.00 2.29
710 843 3.412237 TGCCGTACTTAGCCTTTTTCT 57.588 42.857 0.00 0.00 0.00 2.52
711 844 3.746940 TGCCGTACTTAGCCTTTTTCTT 58.253 40.909 0.00 0.00 0.00 2.52
712 845 3.749609 TGCCGTACTTAGCCTTTTTCTTC 59.250 43.478 0.00 0.00 0.00 2.87
713 846 4.001652 GCCGTACTTAGCCTTTTTCTTCT 58.998 43.478 0.00 0.00 0.00 2.85
714 847 5.173664 GCCGTACTTAGCCTTTTTCTTCTA 58.826 41.667 0.00 0.00 0.00 2.10
715 848 5.816258 GCCGTACTTAGCCTTTTTCTTCTAT 59.184 40.000 0.00 0.00 0.00 1.98
716 849 6.982724 GCCGTACTTAGCCTTTTTCTTCTATA 59.017 38.462 0.00 0.00 0.00 1.31
717 850 7.493645 GCCGTACTTAGCCTTTTTCTTCTATAA 59.506 37.037 0.00 0.00 0.00 0.98
718 851 9.543783 CCGTACTTAGCCTTTTTCTTCTATAAT 57.456 33.333 0.00 0.00 0.00 1.28
736 869 9.612620 TTCTATAATATATGATATGCACGCTCG 57.387 33.333 0.00 0.00 0.00 5.03
737 870 8.784043 TCTATAATATATGATATGCACGCTCGT 58.216 33.333 0.00 0.00 0.00 4.18
747 880 2.577225 CACGCTCGTGCATATTCGA 58.423 52.632 9.55 3.07 39.39 3.71
788 921 1.742880 CATGCACGTGACTCAGGGG 60.743 63.158 22.23 0.18 0.00 4.79
807 940 2.372852 GGCACCTACCAGAACCAGA 58.627 57.895 0.00 0.00 0.00 3.86
808 941 0.690762 GGCACCTACCAGAACCAGAA 59.309 55.000 0.00 0.00 0.00 3.02
811 944 1.003233 CACCTACCAGAACCAGAACCC 59.997 57.143 0.00 0.00 0.00 4.11
812 945 0.618981 CCTACCAGAACCAGAACCCC 59.381 60.000 0.00 0.00 0.00 4.95
813 946 1.657804 CTACCAGAACCAGAACCCCT 58.342 55.000 0.00 0.00 0.00 4.79
814 947 1.985895 CTACCAGAACCAGAACCCCTT 59.014 52.381 0.00 0.00 0.00 3.95
815 948 0.771755 ACCAGAACCAGAACCCCTTC 59.228 55.000 0.00 0.00 0.00 3.46
816 949 0.038310 CCAGAACCAGAACCCCTTCC 59.962 60.000 0.00 0.00 0.00 3.46
817 950 0.771127 CAGAACCAGAACCCCTTCCA 59.229 55.000 0.00 0.00 0.00 3.53
818 951 1.355720 CAGAACCAGAACCCCTTCCAT 59.644 52.381 0.00 0.00 0.00 3.41
848 983 1.216710 CTCTGTCCCAGCCTCGAAC 59.783 63.158 0.00 0.00 0.00 3.95
909 1045 1.541368 TCCACTTTCCCTCCCCAGG 60.541 63.158 0.00 0.00 39.98 4.45
916 1052 1.071314 TTCCCTCCCCAGGCTCAAAA 61.071 55.000 0.00 0.00 38.72 2.44
919 1055 1.675641 CTCCCCAGGCTCAAAACCG 60.676 63.158 0.00 0.00 0.00 4.44
933 1088 1.808411 AAACCGCATACACAGTCTGG 58.192 50.000 4.53 0.00 0.00 3.86
961 1116 3.875727 CACTGCCATCATCTAAGAACAGG 59.124 47.826 0.00 0.00 0.00 4.00
962 1117 3.776969 ACTGCCATCATCTAAGAACAGGA 59.223 43.478 0.00 0.00 0.00 3.86
963 1118 4.411540 ACTGCCATCATCTAAGAACAGGAT 59.588 41.667 0.00 0.00 0.00 3.24
964 1119 5.604231 ACTGCCATCATCTAAGAACAGGATA 59.396 40.000 0.00 0.00 0.00 2.59
965 1120 6.100279 ACTGCCATCATCTAAGAACAGGATAA 59.900 38.462 0.00 0.00 0.00 1.75
966 1121 6.528321 TGCCATCATCTAAGAACAGGATAAG 58.472 40.000 0.00 0.00 0.00 1.73
1080 1235 3.329688 CTTCTGCGACGCGAGGAGT 62.330 63.158 15.93 0.00 0.00 3.85
1127 1285 0.609131 CCCTCCACCACCATGTTCAC 60.609 60.000 0.00 0.00 0.00 3.18
1273 1431 2.030562 CGTCTCCACCACCACCAC 59.969 66.667 0.00 0.00 0.00 4.16
1274 1432 2.802724 CGTCTCCACCACCACCACA 61.803 63.158 0.00 0.00 0.00 4.17
1275 1433 1.529796 GTCTCCACCACCACCACAA 59.470 57.895 0.00 0.00 0.00 3.33
1276 1434 0.535102 GTCTCCACCACCACCACAAG 60.535 60.000 0.00 0.00 0.00 3.16
1277 1435 1.898574 CTCCACCACCACCACAAGC 60.899 63.158 0.00 0.00 0.00 4.01
1278 1436 2.123939 CCACCACCACCACAAGCA 60.124 61.111 0.00 0.00 0.00 3.91
1282 1488 3.964875 CACCACCACAAGCACCGC 61.965 66.667 0.00 0.00 0.00 5.68
1382 1609 2.637872 CGGATGATACCCAGGTAACCAT 59.362 50.000 12.26 12.26 33.99 3.55
1393 1637 1.065854 AGGTAACCATCAGCACTGCTC 60.066 52.381 0.00 0.00 34.02 4.26
1398 1642 1.030488 CCATCAGCACTGCTCCCAAG 61.030 60.000 0.00 0.00 36.40 3.61
1421 1665 6.507023 AGTAAAGAACATTTGCACCTGAAAG 58.493 36.000 1.84 0.00 0.00 2.62
1426 1671 5.536161 AGAACATTTGCACCTGAAAGTACAT 59.464 36.000 0.00 0.00 0.00 2.29
1454 1699 2.774234 AGTTAGTATGCTGCAGGGACAT 59.226 45.455 17.12 12.82 0.00 3.06
1455 1700 2.874701 GTTAGTATGCTGCAGGGACATG 59.125 50.000 17.12 0.00 0.00 3.21
1456 1701 0.182061 AGTATGCTGCAGGGACATGG 59.818 55.000 17.12 0.00 0.00 3.66
1474 1719 6.173427 ACATGGTTGCCAAAATTAGTCTTT 57.827 33.333 0.00 0.00 36.95 2.52
1480 1725 8.884726 TGGTTGCCAAAATTAGTCTTTTAAAAC 58.115 29.630 0.00 0.00 0.00 2.43
1481 1726 8.884726 GGTTGCCAAAATTAGTCTTTTAAAACA 58.115 29.630 0.00 0.00 0.00 2.83
1533 1785 8.717821 CATTACTACTTTTTAGTAAGCTGCACA 58.282 33.333 1.02 0.00 41.55 4.57
1535 1787 9.932207 TTACTACTTTTTAGTAAGCTGCACATA 57.068 29.630 1.02 0.00 35.72 2.29
1538 1790 9.708222 CTACTTTTTAGTAAGCTGCACATAATG 57.292 33.333 1.02 0.00 0.00 1.90
1568 1820 1.207089 TGTGTAATCGGGAGCTGGAAG 59.793 52.381 0.00 0.00 0.00 3.46
1570 1822 2.093658 GTGTAATCGGGAGCTGGAAGAA 60.094 50.000 0.00 0.00 34.07 2.52
1573 1825 4.593206 TGTAATCGGGAGCTGGAAGAATAT 59.407 41.667 0.00 0.00 34.07 1.28
1574 1826 4.713792 AATCGGGAGCTGGAAGAATATT 57.286 40.909 0.00 0.00 34.07 1.28
1576 1828 4.073293 TCGGGAGCTGGAAGAATATTTC 57.927 45.455 0.00 0.00 34.07 2.17
1577 1829 2.802816 CGGGAGCTGGAAGAATATTTCG 59.197 50.000 0.00 0.00 34.07 3.46
1578 1830 3.142174 GGGAGCTGGAAGAATATTTCGG 58.858 50.000 0.00 0.00 34.07 4.30
1579 1831 2.550180 GGAGCTGGAAGAATATTTCGGC 59.450 50.000 0.00 0.00 34.07 5.54
1580 1832 2.550180 GAGCTGGAAGAATATTTCGGCC 59.450 50.000 0.00 0.00 34.07 6.13
1581 1833 2.092429 AGCTGGAAGAATATTTCGGCCA 60.092 45.455 2.24 0.00 36.68 5.36
1583 1835 2.880890 CTGGAAGAATATTTCGGCCAGG 59.119 50.000 2.24 0.00 44.67 4.45
1584 1836 2.507886 TGGAAGAATATTTCGGCCAGGA 59.492 45.455 2.24 0.00 34.41 3.86
1585 1837 2.879026 GGAAGAATATTTCGGCCAGGAC 59.121 50.000 2.24 0.00 34.02 3.85
1586 1838 3.541632 GAAGAATATTTCGGCCAGGACA 58.458 45.455 2.24 0.00 34.02 4.02
1587 1839 3.644966 AGAATATTTCGGCCAGGACAA 57.355 42.857 2.24 0.00 34.02 3.18
1588 1840 3.963129 AGAATATTTCGGCCAGGACAAA 58.037 40.909 2.24 0.00 34.02 2.83
1611 1863 6.648879 AAAGTGTGTATAATGCAACAACCT 57.351 33.333 0.00 0.00 0.00 3.50
1623 1875 4.681744 TGCAACAACCTTGATTTGTCTTC 58.318 39.130 0.00 0.00 36.13 2.87
1631 1883 7.920682 ACAACCTTGATTTGTCTTCATGTTTAC 59.079 33.333 0.00 0.00 31.30 2.01
1638 1890 9.462174 TGATTTGTCTTCATGTTTACATTGTTC 57.538 29.630 0.00 0.00 33.61 3.18
1648 1900 7.855409 TCATGTTTACATTGTTCTTTTCTCACG 59.145 33.333 0.00 0.00 33.61 4.35
1690 1942 4.958509 ACTCATCATGCTGGATTCTAGTG 58.041 43.478 0.00 0.00 0.00 2.74
1702 1957 8.428852 TGCTGGATTCTAGTGCTGTATTTAATA 58.571 33.333 0.00 0.00 0.00 0.98
1703 1958 9.273016 GCTGGATTCTAGTGCTGTATTTAATAA 57.727 33.333 0.00 0.00 0.00 1.40
1711 1966 9.811995 CTAGTGCTGTATTTAATAACACTACCA 57.188 33.333 14.41 3.92 37.93 3.25
1769 2108 6.494842 TCTTGCAAGACATTTTATATTCGCC 58.505 36.000 25.16 0.00 0.00 5.54
1770 2109 5.826601 TGCAAGACATTTTATATTCGCCA 57.173 34.783 0.00 0.00 0.00 5.69
1772 2111 5.215160 GCAAGACATTTTATATTCGCCAGG 58.785 41.667 0.00 0.00 0.00 4.45
1778 2117 8.695456 AGACATTTTATATTCGCCAGGAAAAAT 58.305 29.630 0.00 0.00 38.36 1.82
1779 2118 9.959749 GACATTTTATATTCGCCAGGAAAAATA 57.040 29.630 0.00 0.00 38.36 1.40
1788 2128 4.887071 TCGCCAGGAAAAATAATATGTGCT 59.113 37.500 0.00 0.00 0.00 4.40
1789 2129 4.977963 CGCCAGGAAAAATAATATGTGCTG 59.022 41.667 0.00 0.00 0.00 4.41
1796 2136 7.619302 AGGAAAAATAATATGTGCTGGAAAGGA 59.381 33.333 0.00 0.00 0.00 3.36
1797 2137 7.706607 GGAAAAATAATATGTGCTGGAAAGGAC 59.293 37.037 0.00 0.00 0.00 3.85
1798 2138 7.716799 AAAATAATATGTGCTGGAAAGGACA 57.283 32.000 2.48 2.48 43.87 4.02
1871 2211 9.981114 ATTTGGTAGAGTTATTGGTTCTTTTTG 57.019 29.630 0.00 0.00 0.00 2.44
1880 2220 4.625972 TTGGTTCTTTTTGTCGGTTCTC 57.374 40.909 0.00 0.00 0.00 2.87
1882 2222 2.032290 GGTTCTTTTTGTCGGTTCTCGG 60.032 50.000 0.00 0.00 39.77 4.63
1884 2224 2.908916 TCTTTTTGTCGGTTCTCGGTT 58.091 42.857 0.00 0.00 39.77 4.44
1885 2225 2.610374 TCTTTTTGTCGGTTCTCGGTTG 59.390 45.455 0.00 0.00 39.77 3.77
1928 2275 8.697507 AGAGAATTGAGAAACTTAAACACCAT 57.302 30.769 0.00 0.00 0.00 3.55
1974 2321 8.390921 TCTCACTGAGGAATTACCCTAATTTTT 58.609 33.333 6.20 0.00 38.42 1.94
1983 2330 9.083080 GGAATTACCCTAATTTTTCAATCAACG 57.917 33.333 0.00 0.00 38.42 4.10
1991 2338 8.973378 CCTAATTTTTCAATCAACGCAAACTTA 58.027 29.630 0.00 0.00 0.00 2.24
1996 2343 7.851822 TTTCAATCAACGCAAACTTAGAATC 57.148 32.000 0.00 0.00 0.00 2.52
2002 2349 7.582435 TCAACGCAAACTTAGAATCTTCTAG 57.418 36.000 0.00 0.00 40.57 2.43
2003 2350 6.590292 TCAACGCAAACTTAGAATCTTCTAGG 59.410 38.462 7.35 7.35 40.57 3.02
2061 2408 3.507622 AGGGCAAAAGAGTTATGTCTTGC 59.492 43.478 0.00 0.00 36.86 4.01
2072 2419 4.019321 AGTTATGTCTTGCACCCATGTACT 60.019 41.667 0.00 0.00 0.00 2.73
2119 2466 6.908825 TCAGTAAACAGTTAATGCAATGGAC 58.091 36.000 0.00 0.00 35.69 4.02
2140 2487 4.841422 ACTGCACTTGAAATCTGAGCTAT 58.159 39.130 0.00 0.00 0.00 2.97
2183 2538 6.402226 GCATGCTATGATATGATGACACACTG 60.402 42.308 11.37 0.00 0.00 3.66
2186 2541 5.120363 GCTATGATATGATGACACACTGCAG 59.880 44.000 13.48 13.48 0.00 4.41
2189 2544 6.165700 TGATATGATGACACACTGCAGTAT 57.834 37.500 21.20 5.00 0.00 2.12
2190 2545 6.218746 TGATATGATGACACACTGCAGTATC 58.781 40.000 21.20 18.27 0.00 2.24
2191 2546 3.251479 TGATGACACACTGCAGTATCC 57.749 47.619 21.20 9.69 0.00 2.59
2192 2547 2.833943 TGATGACACACTGCAGTATCCT 59.166 45.455 21.20 10.43 0.00 3.24
2193 2548 3.261643 TGATGACACACTGCAGTATCCTT 59.738 43.478 21.20 7.93 0.00 3.36
2203 2558 2.289565 GCAGTATCCTTTCCTTTCCCG 58.710 52.381 0.00 0.00 0.00 5.14
2219 2574 2.294074 TCCCGACAAAGGTTGAACTTG 58.706 47.619 0.00 0.00 0.00 3.16
2224 2579 5.449304 CCGACAAAGGTTGAACTTGATTAC 58.551 41.667 4.58 0.00 0.00 1.89
2362 2724 2.084546 CCCTAACTGCAAGCCTAACAC 58.915 52.381 0.00 0.00 37.60 3.32
2422 2784 9.712305 GCATATATACACACCAGAAATAAGTCT 57.288 33.333 0.00 0.00 0.00 3.24
2433 2795 9.667107 CACCAGAAATAAGTCTTCCATTACTTA 57.333 33.333 0.00 0.00 41.18 2.24
2444 2806 6.663944 CTTCCATTACTTAAAGGAAGTCGG 57.336 41.667 18.71 0.38 45.81 4.79
2452 2814 4.935808 ACTTAAAGGAAGTCGGCAACTATG 59.064 41.667 0.00 0.00 45.81 2.23
2453 2815 3.418684 AAAGGAAGTCGGCAACTATGT 57.581 42.857 0.00 0.00 37.17 2.29
2456 2818 2.829720 AGGAAGTCGGCAACTATGTACA 59.170 45.455 0.00 0.00 37.17 2.90
2457 2819 2.928116 GGAAGTCGGCAACTATGTACAC 59.072 50.000 0.00 0.00 37.17 2.90
2458 2820 3.368116 GGAAGTCGGCAACTATGTACACT 60.368 47.826 0.00 0.00 37.17 3.55
2460 2822 5.451520 GGAAGTCGGCAACTATGTACACTAT 60.452 44.000 0.00 0.00 37.17 2.12
2461 2823 4.933330 AGTCGGCAACTATGTACACTATG 58.067 43.478 0.00 0.00 36.07 2.23
2462 2824 3.489785 GTCGGCAACTATGTACACTATGC 59.510 47.826 13.44 13.44 0.00 3.14
2463 2825 3.131400 TCGGCAACTATGTACACTATGCA 59.869 43.478 19.87 0.00 34.14 3.96
2464 2826 3.245284 CGGCAACTATGTACACTATGCAC 59.755 47.826 19.87 11.87 34.14 4.57
2465 2827 3.560068 GGCAACTATGTACACTATGCACC 59.440 47.826 19.87 6.10 34.14 5.01
2466 2828 4.188462 GCAACTATGTACACTATGCACCA 58.812 43.478 15.75 0.00 32.80 4.17
2467 2829 4.271049 GCAACTATGTACACTATGCACCAG 59.729 45.833 15.75 0.00 32.80 4.00
2468 2830 5.660460 CAACTATGTACACTATGCACCAGA 58.340 41.667 0.00 0.00 0.00 3.86
2469 2831 5.521906 ACTATGTACACTATGCACCAGAG 57.478 43.478 0.00 0.00 0.00 3.35
2470 2832 2.672961 TGTACACTATGCACCAGAGC 57.327 50.000 4.22 0.00 0.00 4.09
2477 2839 4.604114 TGCACCAGAGCATTCTCG 57.396 55.556 0.00 0.00 44.02 4.04
2478 2840 1.974543 TGCACCAGAGCATTCTCGA 59.025 52.632 0.00 0.00 44.02 4.04
2479 2841 0.390340 TGCACCAGAGCATTCTCGAC 60.390 55.000 0.00 0.00 44.02 4.20
2480 2842 0.390340 GCACCAGAGCATTCTCGACA 60.390 55.000 0.00 0.00 44.02 4.35
2481 2843 1.638133 CACCAGAGCATTCTCGACAG 58.362 55.000 0.00 0.00 44.02 3.51
2482 2844 1.203287 CACCAGAGCATTCTCGACAGA 59.797 52.381 0.00 0.00 44.02 3.41
2528 2890 5.018539 TGCACGCTTACCAAAGTATAGAT 57.981 39.130 0.00 0.00 34.99 1.98
2587 2951 5.277538 GGTTGTAACTGAAACTCTGAAGCTG 60.278 44.000 0.00 0.00 0.00 4.24
2600 2964 3.455910 TCTGAAGCTGTACAATATGCCCT 59.544 43.478 0.00 0.00 0.00 5.19
2632 2998 0.254462 TGGCTACATTCCAATCGGCA 59.746 50.000 0.00 0.00 0.00 5.69
2635 3001 1.335324 GCTACATTCCAATCGGCATGC 60.335 52.381 9.90 9.90 39.34 4.06
2668 3034 6.475402 GCAACAACAAACTAAATAAGCAGTGT 59.525 34.615 0.00 0.00 0.00 3.55
2681 3047 7.420184 AATAAGCAGTGTTGGTTTTAAATGC 57.580 32.000 0.00 0.00 42.03 3.56
2725 3091 4.099419 GGATGGAACCATTTCGGCTAAAAT 59.901 41.667 7.79 0.00 39.03 1.82
2853 3219 4.760530 TGGTGGACCTATTCAGATTCAG 57.239 45.455 0.00 0.00 36.82 3.02
2854 3220 4.361783 TGGTGGACCTATTCAGATTCAGA 58.638 43.478 0.00 0.00 36.82 3.27
2855 3221 4.971282 TGGTGGACCTATTCAGATTCAGAT 59.029 41.667 0.00 0.00 36.82 2.90
2856 3222 5.163269 TGGTGGACCTATTCAGATTCAGATG 60.163 44.000 0.00 0.00 36.82 2.90
2923 3289 9.662947 TCTAACAGCTTCCTTACTTAATAAACC 57.337 33.333 0.00 0.00 0.00 3.27
2996 3362 2.235650 CACTGATCAGGAGCTGGAGAAA 59.764 50.000 26.08 0.00 31.51 2.52
3025 3391 3.945285 CAGATTAAACCCACGGTAAGCAT 59.055 43.478 0.00 0.00 33.12 3.79
3064 3430 9.713740 CTATTGCAGAACTTGAATATCTTTGAC 57.286 33.333 0.00 0.00 0.00 3.18
3228 3594 4.474651 TGTCAGGGAGTCATGGTTCATAAT 59.525 41.667 0.00 0.00 0.00 1.28
3240 3606 4.948847 TGGTTCATAATCTGACCATCTCG 58.051 43.478 0.00 0.00 33.11 4.04
3264 3630 1.656652 CTGAGAATAGCCCCAACACG 58.343 55.000 0.00 0.00 0.00 4.49
3345 3711 5.004448 TGCGGTAATGTTCCTCACAATTTA 58.996 37.500 0.00 0.00 39.50 1.40
3349 3715 7.544217 GCGGTAATGTTCCTCACAATTTATTTT 59.456 33.333 0.00 0.00 39.50 1.82
3350 3716 9.418045 CGGTAATGTTCCTCACAATTTATTTTT 57.582 29.630 0.00 0.00 39.50 1.94
3389 3756 7.957484 CGATGTCACAAAACTTGATTAAGTAGG 59.043 37.037 2.94 0.00 46.14 3.18
3393 3760 8.228464 GTCACAAAACTTGATTAAGTAGGTAGC 58.772 37.037 2.94 0.00 46.14 3.58
3400 3767 8.363761 ACTTGATTAAGTAGGTAGCTGTTACT 57.636 34.615 4.27 0.00 45.07 2.24
3458 3849 7.397476 CAGGATGTAAATATAGAGGGCAGTAGA 59.603 40.741 0.00 0.00 0.00 2.59
3489 3880 2.240493 ACAGAACCACGAGAACTTGG 57.760 50.000 0.00 0.00 40.62 3.61
3719 4110 4.862641 AGACTTGGCAGGTAACCATAAT 57.137 40.909 0.82 0.00 36.96 1.28
3725 4116 3.780294 TGGCAGGTAACCATAATGAGACT 59.220 43.478 0.00 0.00 30.29 3.24
3731 4122 5.045578 AGGTAACCATAATGAGACTGCAACT 60.046 40.000 0.00 0.00 37.17 3.16
3734 4125 4.511527 ACCATAATGAGACTGCAACTCAG 58.488 43.478 21.82 13.60 45.49 3.35
3941 4332 1.019278 CGGTTTCAGGCGTGCAGTAT 61.019 55.000 0.35 0.00 0.00 2.12
3980 4371 4.473520 ACGATCAAGCCCGCCCAG 62.474 66.667 0.00 0.00 0.00 4.45
4049 4440 3.742640 GCATACAACTGAGACCCCTGATC 60.743 52.174 0.00 0.00 0.00 2.92
4097 4488 1.381851 CTTCTGCTGGGAGGCCTTT 59.618 57.895 6.77 0.00 0.00 3.11
4210 4601 2.677902 GCTGAAACTCCATGGACGATCA 60.678 50.000 11.44 13.54 0.00 2.92
4216 4607 0.760567 TCCATGGACGATCAGGGGAG 60.761 60.000 11.44 0.00 38.93 4.30
4217 4608 1.070445 CATGGACGATCAGGGGAGC 59.930 63.158 0.00 0.00 0.00 4.70
4249 4640 6.758886 GCCTGGTGTGAATATATATACAGCTC 59.241 42.308 20.51 11.22 40.91 4.09
4264 4655 2.012673 CAGCTCTTGTTAGGATGTGGC 58.987 52.381 0.00 0.00 0.00 5.01
4276 4667 0.666913 GATGTGGCTGTCATGGCATC 59.333 55.000 0.00 0.00 44.18 3.91
4277 4668 0.754217 ATGTGGCTGTCATGGCATCC 60.754 55.000 13.32 13.32 44.18 3.51
4279 4670 0.966875 GTGGCTGTCATGGCATCCAA 60.967 55.000 23.64 6.36 44.18 3.53
4283 4674 1.536940 CTGTCATGGCATCCAACACA 58.463 50.000 0.00 0.00 36.95 3.72
4284 4675 1.887854 CTGTCATGGCATCCAACACAA 59.112 47.619 0.00 0.00 36.95 3.33
4285 4676 2.494471 CTGTCATGGCATCCAACACAAT 59.506 45.455 0.00 0.00 36.95 2.71
4286 4677 2.898612 TGTCATGGCATCCAACACAATT 59.101 40.909 0.00 0.00 36.95 2.32
4287 4678 4.085009 TGTCATGGCATCCAACACAATTA 58.915 39.130 0.00 0.00 36.95 1.40
4288 4679 4.710865 TGTCATGGCATCCAACACAATTAT 59.289 37.500 0.00 0.00 36.95 1.28
4289 4680 5.187381 TGTCATGGCATCCAACACAATTATT 59.813 36.000 0.00 0.00 36.95 1.40
4290 4681 6.108015 GTCATGGCATCCAACACAATTATTT 58.892 36.000 0.00 0.00 36.95 1.40
4291 4682 6.594937 GTCATGGCATCCAACACAATTATTTT 59.405 34.615 0.00 0.00 36.95 1.82
4292 4683 7.119553 GTCATGGCATCCAACACAATTATTTTT 59.880 33.333 0.00 0.00 36.95 1.94
4363 4754 3.309954 AGCTGAAACACGAGAAGAAACAC 59.690 43.478 0.00 0.00 0.00 3.32
4430 4844 0.112412 CAGGGGCACTACCACCTTTT 59.888 55.000 0.00 0.00 46.79 2.27
4441 4855 7.223971 GGCACTACCACCTTTTTAAAAGAAAAG 59.776 37.037 17.91 10.11 40.67 2.27
4448 4862 9.599866 CCACCTTTTTAAAAGAAAAGAAGTCAT 57.400 29.630 17.91 0.00 45.20 3.06
4517 4931 8.692710 TGGAACACTACATAACTACTCCATAAG 58.307 37.037 0.00 0.00 0.00 1.73
4563 5057 6.259829 TGAACAATTATCATGTGGTACCATCG 59.740 38.462 19.72 9.79 0.00 3.84
4682 5184 0.669318 TCAAAGAGCCAAGCGTACGG 60.669 55.000 18.39 0.63 0.00 4.02
4762 5266 6.851609 TCACATTATAATTGGCTGTGTTGAC 58.148 36.000 13.25 0.00 38.61 3.18
4832 5336 4.453136 GTGTAAACTGCGGGTGATTAAAGA 59.547 41.667 0.00 0.00 0.00 2.52
4838 5342 5.310451 ACTGCGGGTGATTAAAGAGTTTTA 58.690 37.500 0.00 0.00 0.00 1.52
4842 5346 6.084277 GCGGGTGATTAAAGAGTTTTAACAG 58.916 40.000 0.00 0.00 40.51 3.16
4845 5349 7.572539 CGGGTGATTAAAGAGTTTTAACAGGAC 60.573 40.741 0.00 0.00 40.51 3.85
4909 5437 2.505819 AGATGGCGAAGAAGGTAATGGT 59.494 45.455 0.00 0.00 0.00 3.55
4910 5438 2.871096 TGGCGAAGAAGGTAATGGTT 57.129 45.000 0.00 0.00 0.00 3.67
5002 5596 3.725754 AGGTTAACCTGGCAGTGTG 57.274 52.632 26.57 0.23 46.55 3.82
5003 5597 1.136828 AGGTTAACCTGGCAGTGTGA 58.863 50.000 26.57 1.33 46.55 3.58
5064 5658 2.677875 CTGGAACCTTGCAGGCCC 60.678 66.667 0.00 5.14 42.16 5.80
5071 5665 1.833934 CCTTGCAGGCCCACAACTT 60.834 57.895 0.00 0.00 0.00 2.66
5103 5711 1.219213 TGGGTCTGGGGAAAACACATT 59.781 47.619 0.00 0.00 0.00 2.71
5120 5728 3.875727 CACATTACTCCAGCCAATGAGAG 59.124 47.826 7.98 0.00 34.48 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.294659 CTTCACTGCCGCTGTTCTCC 61.295 60.000 0.00 0.00 0.00 3.71
1 2 0.319900 TCTTCACTGCCGCTGTTCTC 60.320 55.000 0.00 0.00 0.00 2.87
6 7 1.005340 GAATCTCTTCACTGCCGCTG 58.995 55.000 0.00 0.00 0.00 5.18
93 94 5.069516 ACAAGTTCGGTTCGGTATATATGGT 59.930 40.000 0.00 0.00 0.00 3.55
98 99 3.196254 ACCACAAGTTCGGTTCGGTATAT 59.804 43.478 0.00 0.00 28.43 0.86
99 100 2.562298 ACCACAAGTTCGGTTCGGTATA 59.438 45.455 0.00 0.00 28.43 1.47
100 101 1.345415 ACCACAAGTTCGGTTCGGTAT 59.655 47.619 0.00 0.00 28.43 2.73
101 102 0.752054 ACCACAAGTTCGGTTCGGTA 59.248 50.000 0.00 0.00 28.43 4.02
102 103 0.531311 GACCACAAGTTCGGTTCGGT 60.531 55.000 0.00 0.00 34.99 4.69
103 104 0.531090 TGACCACAAGTTCGGTTCGG 60.531 55.000 0.00 0.00 34.99 4.30
104 105 0.580104 GTGACCACAAGTTCGGTTCG 59.420 55.000 0.00 0.00 34.99 3.95
105 106 1.658994 TGTGACCACAAGTTCGGTTC 58.341 50.000 0.00 0.00 38.56 3.62
106 107 2.341846 ATGTGACCACAAGTTCGGTT 57.658 45.000 6.95 0.00 45.41 4.44
128 129 4.522789 GGGTATTCTTTGGAGAACTTGCAA 59.477 41.667 0.00 0.00 44.27 4.08
130 131 4.156739 CAGGGTATTCTTTGGAGAACTTGC 59.843 45.833 0.00 0.00 44.27 4.01
131 132 5.412904 GTCAGGGTATTCTTTGGAGAACTTG 59.587 44.000 0.00 0.00 44.27 3.16
132 133 5.073144 TGTCAGGGTATTCTTTGGAGAACTT 59.927 40.000 0.00 0.00 44.27 2.66
134 135 4.695928 GTGTCAGGGTATTCTTTGGAGAAC 59.304 45.833 0.00 0.00 44.27 3.01
135 136 4.562757 CGTGTCAGGGTATTCTTTGGAGAA 60.563 45.833 0.00 0.00 45.45 2.87
136 137 3.056107 CGTGTCAGGGTATTCTTTGGAGA 60.056 47.826 0.00 0.00 0.00 3.71
158 161 0.997932 CTCTTCTGCTGTCATCGTGC 59.002 55.000 0.00 0.00 0.00 5.34
175 178 6.872628 TGCATGGTGATTGAATCTAATCTC 57.127 37.500 6.73 0.00 37.81 2.75
226 266 1.274447 GACCCGTTTGCCACTAGTAGT 59.726 52.381 0.00 0.00 0.00 2.73
227 267 1.734707 CGACCCGTTTGCCACTAGTAG 60.735 57.143 0.00 0.00 0.00 2.57
228 268 0.244450 CGACCCGTTTGCCACTAGTA 59.756 55.000 0.00 0.00 0.00 1.82
287 327 8.359642 TCATTTATTATAAAGTTGGATGCTGCC 58.640 33.333 3.73 0.00 0.00 4.85
324 364 0.888736 TGTGTGATCGGCCTTGTTGG 60.889 55.000 0.00 0.00 39.35 3.77
340 393 8.783093 TGTTTTATCTTCAGACTTTGGTATGTG 58.217 33.333 0.00 0.00 36.23 3.21
361 414 5.564651 CGCAATTTGTATCCACTCCTGTTTT 60.565 40.000 0.00 0.00 0.00 2.43
369 422 3.937814 TGAGTCGCAATTTGTATCCACT 58.062 40.909 0.00 0.00 0.00 4.00
370 423 4.678509 TTGAGTCGCAATTTGTATCCAC 57.321 40.909 0.00 0.00 0.00 4.02
371 424 5.697473 TTTTGAGTCGCAATTTGTATCCA 57.303 34.783 0.00 0.00 36.15 3.41
434 487 6.413892 TCTTCAAATGGGCTTTCTTGTTTTT 58.586 32.000 0.00 0.00 0.00 1.94
435 488 5.988287 TCTTCAAATGGGCTTTCTTGTTTT 58.012 33.333 0.00 0.00 0.00 2.43
442 575 9.631452 GCTAATTATATCTTCAAATGGGCTTTC 57.369 33.333 0.00 0.00 0.00 2.62
457 590 4.929146 ACCCCACCCTGCTAATTATATC 57.071 45.455 0.00 0.00 0.00 1.63
484 617 1.002069 AGGAAGGTGGCATCCAATCA 58.998 50.000 8.26 0.00 38.23 2.57
507 640 0.806102 CTAATGGCTCACGGTCACGG 60.806 60.000 0.00 0.00 46.48 4.94
509 642 2.094390 TGTACTAATGGCTCACGGTCAC 60.094 50.000 0.00 0.00 29.70 3.67
510 643 2.165641 CTGTACTAATGGCTCACGGTCA 59.834 50.000 0.00 0.00 0.00 4.02
511 644 2.481449 CCTGTACTAATGGCTCACGGTC 60.481 54.545 0.00 0.00 0.00 4.79
512 645 1.480954 CCTGTACTAATGGCTCACGGT 59.519 52.381 0.00 0.00 0.00 4.83
554 687 8.854117 GCTCCATTATCCAGAAAGAAATATGTT 58.146 33.333 0.00 0.00 0.00 2.71
558 691 5.470098 GCGCTCCATTATCCAGAAAGAAATA 59.530 40.000 0.00 0.00 0.00 1.40
566 699 2.936919 ATTGCGCTCCATTATCCAGA 57.063 45.000 9.73 0.00 0.00 3.86
567 700 2.227388 GGAATTGCGCTCCATTATCCAG 59.773 50.000 9.73 0.00 32.77 3.86
580 713 0.804989 GTTGGAGTGGAGGAATTGCG 59.195 55.000 0.00 0.00 0.00 4.85
588 721 1.550524 TGAGAATCGGTTGGAGTGGAG 59.449 52.381 0.00 0.00 38.61 3.86
589 722 1.275291 GTGAGAATCGGTTGGAGTGGA 59.725 52.381 0.00 0.00 38.61 4.02
590 723 1.726853 GTGAGAATCGGTTGGAGTGG 58.273 55.000 0.00 0.00 38.61 4.00
591 724 1.350193 CGTGAGAATCGGTTGGAGTG 58.650 55.000 0.00 0.00 38.61 3.51
592 725 0.246635 CCGTGAGAATCGGTTGGAGT 59.753 55.000 0.00 0.00 42.62 3.85
611 744 4.362279 TGATGTGCTGCTTTTGTTCTTTC 58.638 39.130 0.00 0.00 0.00 2.62
644 777 1.534595 CTTCCAACTGCACAGAGCTTC 59.465 52.381 4.31 0.00 45.94 3.86
647 780 0.536006 ACCTTCCAACTGCACAGAGC 60.536 55.000 4.31 0.00 45.96 4.09
661 794 2.424956 GGATGGATGAACTGCAACCTTC 59.575 50.000 0.00 0.00 39.98 3.46
662 795 2.225091 TGGATGGATGAACTGCAACCTT 60.225 45.455 0.00 0.00 38.71 3.50
710 843 9.612620 CGAGCGTGCATATCATATATTATAGAA 57.387 33.333 0.00 0.00 0.00 2.10
711 844 8.784043 ACGAGCGTGCATATCATATATTATAGA 58.216 33.333 0.00 0.00 0.00 1.98
712 845 8.844690 CACGAGCGTGCATATCATATATTATAG 58.155 37.037 10.25 0.00 39.39 1.31
713 846 8.728088 CACGAGCGTGCATATCATATATTATA 57.272 34.615 10.25 0.00 39.39 0.98
714 847 7.629027 CACGAGCGTGCATATCATATATTAT 57.371 36.000 10.25 0.00 39.39 1.28
716 849 5.956171 CACGAGCGTGCATATCATATATT 57.044 39.130 10.25 0.00 39.39 1.28
729 862 0.500178 CTCGAATATGCACGAGCGTG 59.500 55.000 17.85 17.85 46.54 5.34
730 863 2.873367 CTCGAATATGCACGAGCGT 58.127 52.632 10.95 4.63 46.54 5.07
752 885 1.140804 GCGTGGGCGGCATATTTTT 59.859 52.632 12.47 0.00 38.78 1.94
753 886 2.049185 TGCGTGGGCGGCATATTTT 61.049 52.632 12.47 0.00 44.10 1.82
754 887 2.439338 TGCGTGGGCGGCATATTT 60.439 55.556 12.47 0.00 44.10 1.40
788 921 1.198759 TCTGGTTCTGGTAGGTGCCC 61.199 60.000 0.00 0.00 0.00 5.36
795 928 1.982958 GAAGGGGTTCTGGTTCTGGTA 59.017 52.381 0.00 0.00 0.00 3.25
805 938 4.119155 TGGAGATAAATGGAAGGGGTTCT 58.881 43.478 0.00 0.00 0.00 3.01
806 939 4.519906 TGGAGATAAATGGAAGGGGTTC 57.480 45.455 0.00 0.00 0.00 3.62
807 940 5.196574 AGAATGGAGATAAATGGAAGGGGTT 59.803 40.000 0.00 0.00 0.00 4.11
808 941 4.733988 AGAATGGAGATAAATGGAAGGGGT 59.266 41.667 0.00 0.00 0.00 4.95
811 944 6.599445 ACAGAGAATGGAGATAAATGGAAGG 58.401 40.000 0.00 0.00 0.00 3.46
812 945 6.709846 GGACAGAGAATGGAGATAAATGGAAG 59.290 42.308 0.00 0.00 0.00 3.46
813 946 6.409695 GGGACAGAGAATGGAGATAAATGGAA 60.410 42.308 0.00 0.00 0.00 3.53
814 947 5.072329 GGGACAGAGAATGGAGATAAATGGA 59.928 44.000 0.00 0.00 0.00 3.41
815 948 5.163163 TGGGACAGAGAATGGAGATAAATGG 60.163 44.000 0.00 0.00 0.00 3.16
816 949 5.933617 TGGGACAGAGAATGGAGATAAATG 58.066 41.667 0.00 0.00 0.00 2.32
848 983 1.138859 TGGAGACGCCATGGATACTTG 59.861 52.381 18.40 0.00 43.33 3.16
872 1007 2.091830 GGAGGGGTTTAAATAGCCAGCT 60.092 50.000 0.00 0.00 37.42 4.24
909 1045 1.535462 ACTGTGTATGCGGTTTTGAGC 59.465 47.619 0.00 0.00 0.00 4.26
916 1052 1.079127 GCCAGACTGTGTATGCGGT 60.079 57.895 0.93 0.00 0.00 5.68
919 1055 0.250234 TCCAGCCAGACTGTGTATGC 59.750 55.000 0.93 0.00 45.68 3.14
933 1088 0.107312 AGATGATGGCAGTGTCCAGC 60.107 55.000 12.97 12.97 42.56 4.85
961 1116 4.067896 TCGTACCGACCAGTATCCTTATC 58.932 47.826 0.00 0.00 0.00 1.75
962 1117 4.090761 TCGTACCGACCAGTATCCTTAT 57.909 45.455 0.00 0.00 0.00 1.73
963 1118 3.558931 TCGTACCGACCAGTATCCTTA 57.441 47.619 0.00 0.00 0.00 2.69
964 1119 2.425143 TCGTACCGACCAGTATCCTT 57.575 50.000 0.00 0.00 0.00 3.36
965 1120 2.295885 CTTCGTACCGACCAGTATCCT 58.704 52.381 0.00 0.00 34.89 3.24
966 1121 1.268948 GCTTCGTACCGACCAGTATCC 60.269 57.143 0.00 0.00 34.89 2.59
978 1133 3.073446 GCGTCTGCAGCTTCGTAC 58.927 61.111 9.47 0.00 42.15 3.67
1080 1235 3.855503 CTGCCTCCAGTGCTTGCCA 62.856 63.158 0.00 0.00 34.31 4.92
1127 1285 3.525800 TCTTCCCTTTCCCTTTCCTTG 57.474 47.619 0.00 0.00 0.00 3.61
1196 1354 1.001641 GGCATTGCAGGACTCTGGT 60.002 57.895 11.39 0.00 41.19 4.00
1197 1355 2.110967 CGGCATTGCAGGACTCTGG 61.111 63.158 11.39 0.00 41.19 3.86
1224 1382 2.193127 CCATTACCACCACCTGGACTA 58.807 52.381 0.00 0.00 43.95 2.59
1344 1571 2.629656 CGTAACTCCGTCACCCCGT 61.630 63.158 0.00 0.00 0.00 5.28
1371 1598 1.742761 CAGTGCTGATGGTTACCTGG 58.257 55.000 2.07 0.00 0.00 4.45
1382 1609 1.055849 TTACTTGGGAGCAGTGCTGA 58.944 50.000 25.35 2.80 39.88 4.26
1393 1637 4.039124 AGGTGCAAATGTTCTTTACTTGGG 59.961 41.667 0.00 0.00 0.00 4.12
1398 1642 6.273071 ACTTTCAGGTGCAAATGTTCTTTAC 58.727 36.000 0.00 0.00 0.00 2.01
1421 1665 8.020819 TGCAGCATACTAACTTGAAAAATGTAC 58.979 33.333 0.00 0.00 0.00 2.90
1426 1671 5.048083 CCCTGCAGCATACTAACTTGAAAAA 60.048 40.000 8.66 0.00 0.00 1.94
1454 1699 8.884726 GTTTTAAAAGACTAATTTTGGCAACCA 58.115 29.630 0.00 0.00 34.35 3.67
1455 1700 8.884726 TGTTTTAAAAGACTAATTTTGGCAACC 58.115 29.630 0.00 0.00 34.35 3.77
1474 1719 6.628398 GCAATCACGGGGGATTATTGTTTTAA 60.628 38.462 0.00 0.00 35.79 1.52
1480 1725 2.034558 GTGCAATCACGGGGGATTATTG 59.965 50.000 0.00 0.00 35.79 1.90
1481 1726 2.306847 GTGCAATCACGGGGGATTATT 58.693 47.619 0.00 0.00 35.79 1.40
1483 1728 0.621082 TGTGCAATCACGGGGGATTA 59.379 50.000 0.00 0.00 46.01 1.75
1484 1729 0.251564 TTGTGCAATCACGGGGGATT 60.252 50.000 0.00 0.00 46.01 3.01
1486 1731 0.679640 GATTGTGCAATCACGGGGGA 60.680 55.000 17.19 0.00 46.01 4.81
1487 1732 1.809207 GATTGTGCAATCACGGGGG 59.191 57.895 17.19 0.00 46.01 5.40
1508 1759 8.842358 TGTGCAGCTTACTAAAAAGTAGTAAT 57.158 30.769 6.46 0.00 38.75 1.89
1512 1764 9.708222 CATTATGTGCAGCTTACTAAAAAGTAG 57.292 33.333 0.00 0.00 0.00 2.57
1514 1766 8.023128 CACATTATGTGCAGCTTACTAAAAAGT 58.977 33.333 12.62 0.00 41.89 2.66
1515 1767 8.385789 CACATTATGTGCAGCTTACTAAAAAG 57.614 34.615 12.62 0.00 41.89 2.27
1533 1785 7.064134 CCCGATTACACATTATACGCACATTAT 59.936 37.037 0.00 0.00 0.00 1.28
1535 1787 5.178623 CCCGATTACACATTATACGCACATT 59.821 40.000 0.00 0.00 0.00 2.71
1538 1790 4.300803 TCCCGATTACACATTATACGCAC 58.699 43.478 0.00 0.00 0.00 5.34
1542 1794 4.929808 CCAGCTCCCGATTACACATTATAC 59.070 45.833 0.00 0.00 0.00 1.47
1543 1795 4.836175 TCCAGCTCCCGATTACACATTATA 59.164 41.667 0.00 0.00 0.00 0.98
1544 1796 3.646162 TCCAGCTCCCGATTACACATTAT 59.354 43.478 0.00 0.00 0.00 1.28
1545 1797 3.035363 TCCAGCTCCCGATTACACATTA 58.965 45.455 0.00 0.00 0.00 1.90
1546 1798 1.837439 TCCAGCTCCCGATTACACATT 59.163 47.619 0.00 0.00 0.00 2.71
1547 1799 1.496060 TCCAGCTCCCGATTACACAT 58.504 50.000 0.00 0.00 0.00 3.21
1548 1800 1.207089 CTTCCAGCTCCCGATTACACA 59.793 52.381 0.00 0.00 0.00 3.72
1549 1801 1.480954 TCTTCCAGCTCCCGATTACAC 59.519 52.381 0.00 0.00 0.00 2.90
1550 1802 1.860641 TCTTCCAGCTCCCGATTACA 58.139 50.000 0.00 0.00 0.00 2.41
1551 1803 2.981859 TTCTTCCAGCTCCCGATTAC 57.018 50.000 0.00 0.00 0.00 1.89
1552 1804 5.825593 AATATTCTTCCAGCTCCCGATTA 57.174 39.130 0.00 0.00 0.00 1.75
1553 1805 4.713792 AATATTCTTCCAGCTCCCGATT 57.286 40.909 0.00 0.00 0.00 3.34
1568 1820 4.712122 TTTTGTCCTGGCCGAAATATTC 57.288 40.909 0.00 0.00 0.00 1.75
1570 1822 4.082245 CACTTTTTGTCCTGGCCGAAATAT 60.082 41.667 0.00 0.00 0.00 1.28
1573 1825 1.407258 CACTTTTTGTCCTGGCCGAAA 59.593 47.619 0.00 0.00 0.00 3.46
1574 1826 1.028905 CACTTTTTGTCCTGGCCGAA 58.971 50.000 0.00 0.00 0.00 4.30
1576 1828 0.030638 CACACTTTTTGTCCTGGCCG 59.969 55.000 0.00 0.00 35.67 6.13
1577 1829 1.111277 ACACACTTTTTGTCCTGGCC 58.889 50.000 0.00 0.00 35.67 5.36
1578 1830 5.699097 TTATACACACTTTTTGTCCTGGC 57.301 39.130 0.00 0.00 35.67 4.85
1579 1831 6.092748 GCATTATACACACTTTTTGTCCTGG 58.907 40.000 0.00 0.00 35.67 4.45
1580 1832 6.676950 TGCATTATACACACTTTTTGTCCTG 58.323 36.000 0.00 0.00 35.67 3.86
1581 1833 6.892658 TGCATTATACACACTTTTTGTCCT 57.107 33.333 0.00 0.00 35.67 3.85
1582 1834 6.920758 TGTTGCATTATACACACTTTTTGTCC 59.079 34.615 0.00 0.00 35.67 4.02
1583 1835 7.922505 TGTTGCATTATACACACTTTTTGTC 57.077 32.000 0.00 0.00 35.67 3.18
1584 1836 7.223777 GGTTGTTGCATTATACACACTTTTTGT 59.776 33.333 0.00 0.00 39.97 2.83
1585 1837 7.437862 AGGTTGTTGCATTATACACACTTTTTG 59.562 33.333 0.00 0.00 0.00 2.44
1586 1838 7.496747 AGGTTGTTGCATTATACACACTTTTT 58.503 30.769 0.00 0.00 0.00 1.94
1587 1839 7.049799 AGGTTGTTGCATTATACACACTTTT 57.950 32.000 0.00 0.00 0.00 2.27
1588 1840 6.648879 AGGTTGTTGCATTATACACACTTT 57.351 33.333 0.00 0.00 0.00 2.66
1611 1863 9.814899 AACAATGTAAACATGAAGACAAATCAA 57.185 25.926 0.00 0.00 36.56 2.57
1623 1875 7.643764 ACGTGAGAAAAGAACAATGTAAACATG 59.356 33.333 0.00 0.00 36.56 3.21
1631 1883 5.626543 CCAATCACGTGAGAAAAGAACAATG 59.373 40.000 24.41 7.56 0.00 2.82
1638 1890 1.879380 TGCCCAATCACGTGAGAAAAG 59.121 47.619 24.41 12.03 0.00 2.27
1648 1900 5.822519 TGAGTAAAGACATATGCCCAATCAC 59.177 40.000 1.58 0.00 0.00 3.06
1706 1961 6.879458 AGGAAGCTTGTACTACAATTTGGTAG 59.121 38.462 2.10 2.26 44.97 3.18
1708 1963 5.631119 AGGAAGCTTGTACTACAATTTGGT 58.369 37.500 2.10 0.00 37.48 3.67
1709 1964 7.865706 ATAGGAAGCTTGTACTACAATTTGG 57.134 36.000 2.10 0.00 37.48 3.28
1710 1965 8.552034 GCTATAGGAAGCTTGTACTACAATTTG 58.448 37.037 2.10 0.00 37.48 2.32
1711 1966 8.265055 TGCTATAGGAAGCTTGTACTACAATTT 58.735 33.333 2.10 1.26 43.19 1.82
1712 1967 7.792032 TGCTATAGGAAGCTTGTACTACAATT 58.208 34.615 2.10 0.00 43.19 2.32
1714 1969 6.785337 TGCTATAGGAAGCTTGTACTACAA 57.215 37.500 2.10 1.67 43.19 2.41
1716 1971 7.307455 GCAATTGCTATAGGAAGCTTGTACTAC 60.307 40.741 23.21 0.00 43.19 2.73
1717 1972 6.706270 GCAATTGCTATAGGAAGCTTGTACTA 59.294 38.462 23.21 4.04 43.19 1.82
1719 1974 5.296780 TGCAATTGCTATAGGAAGCTTGTAC 59.703 40.000 29.37 6.60 43.19 2.90
1720 1975 5.436175 TGCAATTGCTATAGGAAGCTTGTA 58.564 37.500 29.37 12.14 43.19 2.41
1722 1977 4.906065 TGCAATTGCTATAGGAAGCTTG 57.094 40.909 29.37 12.91 43.19 4.01
1765 2104 4.887071 AGCACATATTATTTTTCCTGGCGA 59.113 37.500 0.00 0.00 0.00 5.54
1766 2105 4.977963 CAGCACATATTATTTTTCCTGGCG 59.022 41.667 0.00 0.00 0.00 5.69
1769 2108 7.707893 CCTTTCCAGCACATATTATTTTTCCTG 59.292 37.037 0.00 0.00 0.00 3.86
1770 2109 7.619302 TCCTTTCCAGCACATATTATTTTTCCT 59.381 33.333 0.00 0.00 0.00 3.36
1772 2111 8.250332 TGTCCTTTCCAGCACATATTATTTTTC 58.750 33.333 0.00 0.00 0.00 2.29
1778 2117 7.342581 TGTTATGTCCTTTCCAGCACATATTA 58.657 34.615 0.00 0.00 32.96 0.98
1779 2118 6.186957 TGTTATGTCCTTTCCAGCACATATT 58.813 36.000 0.00 0.00 32.96 1.28
1783 2123 3.500448 TGTTATGTCCTTTCCAGCACA 57.500 42.857 0.00 0.00 0.00 4.57
1788 2128 5.690865 ACTTGAGTTGTTATGTCCTTTCCA 58.309 37.500 0.00 0.00 0.00 3.53
1789 2129 6.635030 AACTTGAGTTGTTATGTCCTTTCC 57.365 37.500 0.00 0.00 36.80 3.13
1796 2136 4.097286 ACCGCAAAACTTGAGTTGTTATGT 59.903 37.500 0.00 0.00 38.44 2.29
1797 2137 4.606961 ACCGCAAAACTTGAGTTGTTATG 58.393 39.130 0.00 0.00 38.44 1.90
1798 2138 4.911514 ACCGCAAAACTTGAGTTGTTAT 57.088 36.364 0.00 0.00 38.44 1.89
1799 2139 4.439016 GGAACCGCAAAACTTGAGTTGTTA 60.439 41.667 0.00 0.00 38.44 2.41
1800 2140 3.507786 GAACCGCAAAACTTGAGTTGTT 58.492 40.909 0.00 0.00 38.44 2.83
1801 2141 2.159296 GGAACCGCAAAACTTGAGTTGT 60.159 45.455 0.00 0.00 38.44 3.32
1802 2142 2.459934 GGAACCGCAAAACTTGAGTTG 58.540 47.619 0.00 0.00 38.44 3.16
1849 2189 7.295930 CGACAAAAAGAACCAATAACTCTACC 58.704 38.462 0.00 0.00 0.00 3.18
1871 2211 2.207590 AGAAAACAACCGAGAACCGAC 58.792 47.619 0.00 0.00 41.76 4.79
1902 2242 8.519799 TGGTGTTTAAGTTTCTCAATTCTCTT 57.480 30.769 0.00 0.00 0.00 2.85
1930 2277 9.877222 TCAGTGAGAACCCATAGTATAATCTAA 57.123 33.333 0.00 0.00 0.00 2.10
1933 2280 7.451877 TCCTCAGTGAGAACCCATAGTATAATC 59.548 40.741 22.09 0.00 0.00 1.75
1974 2321 6.801539 AGATTCTAAGTTTGCGTTGATTGA 57.198 33.333 0.00 0.00 0.00 2.57
2046 2393 3.788227 TGGGTGCAAGACATAACTCTT 57.212 42.857 0.00 0.00 0.00 2.85
2048 2395 3.347216 ACATGGGTGCAAGACATAACTC 58.653 45.455 0.00 0.00 0.00 3.01
2061 2408 4.512944 GCTATTGTGATCAGTACATGGGTG 59.487 45.833 0.00 0.00 0.00 4.61
2072 2419 5.027293 ACACTGCTATGCTATTGTGATCA 57.973 39.130 0.00 0.00 0.00 2.92
2113 2460 4.401022 TCAGATTTCAAGTGCAGTCCATT 58.599 39.130 0.00 0.00 0.00 3.16
2119 2466 5.814188 TGTATAGCTCAGATTTCAAGTGCAG 59.186 40.000 0.00 0.00 0.00 4.41
2186 2541 3.622166 TGTCGGGAAAGGAAAGGATAC 57.378 47.619 0.00 0.00 0.00 2.24
2189 2544 2.858745 CTTTGTCGGGAAAGGAAAGGA 58.141 47.619 0.00 0.00 30.50 3.36
2203 2558 9.220767 AGATAGTAATCAAGTTCAACCTTTGTC 57.779 33.333 0.00 0.00 34.28 3.18
2316 2678 3.967332 AAATGAGATTGGGCCAACAAG 57.033 42.857 23.59 0.00 33.23 3.16
2342 2704 2.084546 GTGTTAGGCTTGCAGTTAGGG 58.915 52.381 0.00 0.00 0.00 3.53
2433 2795 3.418684 ACATAGTTGCCGACTTCCTTT 57.581 42.857 0.00 0.00 39.86 3.11
2443 2805 3.560068 GGTGCATAGTGTACATAGTTGCC 59.440 47.826 15.75 9.78 34.53 4.52
2444 2806 4.188462 TGGTGCATAGTGTACATAGTTGC 58.812 43.478 0.00 7.40 34.53 4.17
2452 2814 2.672961 TGCTCTGGTGCATAGTGTAC 57.327 50.000 0.00 0.00 38.12 2.90
2461 2823 0.390340 TGTCGAGAATGCTCTGGTGC 60.390 55.000 0.00 0.00 39.06 5.01
2462 2824 1.203287 TCTGTCGAGAATGCTCTGGTG 59.797 52.381 0.00 0.00 39.06 4.17
2463 2825 1.203523 GTCTGTCGAGAATGCTCTGGT 59.796 52.381 0.00 0.00 39.06 4.00
2464 2826 1.203287 TGTCTGTCGAGAATGCTCTGG 59.797 52.381 0.00 0.00 39.06 3.86
2465 2827 2.643933 TGTCTGTCGAGAATGCTCTG 57.356 50.000 0.00 0.00 39.06 3.35
2466 2828 2.159128 CCATGTCTGTCGAGAATGCTCT 60.159 50.000 0.00 0.00 39.06 4.09
2467 2829 2.200067 CCATGTCTGTCGAGAATGCTC 58.800 52.381 0.00 0.00 37.81 4.26
2468 2830 1.552337 ACCATGTCTGTCGAGAATGCT 59.448 47.619 0.00 0.00 0.00 3.79
2469 2831 2.015736 ACCATGTCTGTCGAGAATGC 57.984 50.000 0.00 0.00 0.00 3.56
2470 2832 3.329386 ACAACCATGTCTGTCGAGAATG 58.671 45.455 0.00 0.00 33.41 2.67
2471 2833 3.685139 ACAACCATGTCTGTCGAGAAT 57.315 42.857 0.00 0.00 33.41 2.40
2472 2834 3.130633 CAACAACCATGTCTGTCGAGAA 58.869 45.455 0.00 0.00 39.40 2.87
2473 2835 2.102420 ACAACAACCATGTCTGTCGAGA 59.898 45.455 0.00 0.00 39.40 4.04
2474 2836 2.483876 ACAACAACCATGTCTGTCGAG 58.516 47.619 0.00 0.00 39.40 4.04
2475 2837 2.613026 ACAACAACCATGTCTGTCGA 57.387 45.000 0.00 0.00 39.40 4.20
2476 2838 3.064682 TCAAACAACAACCATGTCTGTCG 59.935 43.478 0.00 0.00 39.40 4.35
2477 2839 4.630894 TCAAACAACAACCATGTCTGTC 57.369 40.909 0.00 0.00 39.40 3.51
2478 2840 4.737352 GCATCAAACAACAACCATGTCTGT 60.737 41.667 0.00 0.00 39.40 3.41
2479 2841 3.737266 GCATCAAACAACAACCATGTCTG 59.263 43.478 0.00 0.00 39.40 3.51
2480 2842 3.638160 AGCATCAAACAACAACCATGTCT 59.362 39.130 0.00 0.00 39.40 3.41
2481 2843 3.981211 AGCATCAAACAACAACCATGTC 58.019 40.909 0.00 0.00 39.40 3.06
2482 2844 3.638160 AGAGCATCAAACAACAACCATGT 59.362 39.130 0.00 0.00 38.76 3.21
2511 2873 9.982651 TGAATGTCTATCTATACTTTGGTAAGC 57.017 33.333 0.00 0.00 34.60 3.09
2587 2951 6.069963 AGGAATCTGGATAGGGCATATTGTAC 60.070 42.308 0.00 0.00 0.00 2.90
2600 2964 5.221925 GGAATGTAGCCAAGGAATCTGGATA 60.222 44.000 0.00 0.00 0.00 2.59
2632 2998 6.331369 AGTTTGTTGTTGCATAACTAGCAT 57.669 33.333 13.45 0.00 42.33 3.79
2668 3034 5.175859 TGAAAACACGGCATTTAAAACCAA 58.824 33.333 10.32 0.00 0.00 3.67
2681 3047 3.980775 CCAGCTACAAAATGAAAACACGG 59.019 43.478 0.00 0.00 0.00 4.94
2783 3149 3.251729 CACTGCCTTGAATTGATATCCCG 59.748 47.826 0.00 0.00 0.00 5.14
2853 3219 8.994170 GTCCATATCATCATCATCATCATCATC 58.006 37.037 0.00 0.00 0.00 2.92
2854 3220 8.718656 AGTCCATATCATCATCATCATCATCAT 58.281 33.333 0.00 0.00 0.00 2.45
2855 3221 8.090788 AGTCCATATCATCATCATCATCATCA 57.909 34.615 0.00 0.00 0.00 3.07
2856 3222 8.204836 TGAGTCCATATCATCATCATCATCATC 58.795 37.037 0.00 0.00 0.00 2.92
2942 3308 7.096551 GGAAGCATCCAAAGTAAGCAATTAAA 58.903 34.615 2.32 0.00 45.79 1.52
2943 3309 6.630071 GGAAGCATCCAAAGTAAGCAATTAA 58.370 36.000 2.32 0.00 45.79 1.40
2996 3362 2.491693 CGTGGGTTTAATCTGTGGCATT 59.508 45.455 0.00 0.00 0.00 3.56
3064 3430 6.785191 ACTTAATTTGGTCTGATATGCAACG 58.215 36.000 0.00 0.00 0.00 4.10
3228 3594 0.684479 CAGGGGACGAGATGGTCAGA 60.684 60.000 0.00 0.00 38.70 3.27
3240 3606 0.694444 TGGGGCTATTCTCAGGGGAC 60.694 60.000 0.00 0.00 0.00 4.46
3264 3630 3.763897 AGTTTTGCAGGTGTATTCCATCC 59.236 43.478 0.00 0.00 0.00 3.51
3345 3711 9.432077 GTGACATCGCAAACAAAAATTAAAAAT 57.568 25.926 0.00 0.00 0.00 1.82
3349 3715 7.525688 TTGTGACATCGCAAACAAAAATTAA 57.474 28.000 5.41 0.00 42.60 1.40
3458 3849 9.661563 TTCTCGTGGTTCTGTATACAAATTATT 57.338 29.630 7.06 0.00 0.00 1.40
3464 3855 5.717078 AGTTCTCGTGGTTCTGTATACAA 57.283 39.130 7.06 0.00 0.00 2.41
3489 3880 7.623770 CATTGCACAAGGTAAATATTTCATGC 58.376 34.615 3.39 7.45 0.00 4.06
3579 3970 2.287117 ATCCCATGGCCTGGTCCA 60.287 61.111 6.09 11.41 44.30 4.02
3725 4116 1.202794 TGCTGGATGAACTGAGTTGCA 60.203 47.619 0.90 1.69 0.00 4.08
3756 4147 8.260114 CCTAGTGTGATTGGATATATGTATGCA 58.740 37.037 0.00 0.00 36.94 3.96
3941 4332 0.546747 AAGTCCCCCGGATGTTCTCA 60.547 55.000 0.73 0.00 32.73 3.27
4004 4395 0.397675 TCAGGGTGATCTCCGAGCAT 60.398 55.000 7.70 0.00 28.52 3.79
4049 4440 0.037326 ATGTGTGGTACTGAGGCACG 60.037 55.000 0.00 0.00 33.23 5.34
4089 4480 1.562672 TACAGCTCCCCAAAGGCCTC 61.563 60.000 5.23 0.00 34.51 4.70
4097 4488 4.130255 GGAGTGTACAGCTCCCCA 57.870 61.111 23.43 0.00 45.05 4.96
4210 4601 2.204059 AGGCACAAGAGCTCCCCT 60.204 61.111 10.93 5.91 34.17 4.79
4216 4607 0.819259 TTCACACCAGGCACAAGAGC 60.819 55.000 0.00 0.00 0.00 4.09
4217 4608 1.901591 ATTCACACCAGGCACAAGAG 58.098 50.000 0.00 0.00 0.00 2.85
4249 4640 3.057969 TGACAGCCACATCCTAACAAG 57.942 47.619 0.00 0.00 0.00 3.16
4264 4655 1.536940 TGTGTTGGATGCCATGACAG 58.463 50.000 0.00 0.00 31.53 3.51
4289 4680 5.617528 TCCTATATACGTCCTGCCAAAAA 57.382 39.130 0.00 0.00 0.00 1.94
4290 4681 5.818678 ATCCTATATACGTCCTGCCAAAA 57.181 39.130 0.00 0.00 0.00 2.44
4291 4682 6.014647 ACTATCCTATATACGTCCTGCCAAA 58.985 40.000 0.00 0.00 0.00 3.28
4292 4683 5.417894 CACTATCCTATATACGTCCTGCCAA 59.582 44.000 0.00 0.00 0.00 4.52
4293 4684 4.948004 CACTATCCTATATACGTCCTGCCA 59.052 45.833 0.00 0.00 0.00 4.92
4294 4685 5.191426 TCACTATCCTATATACGTCCTGCC 58.809 45.833 0.00 0.00 0.00 4.85
4295 4686 6.319152 ACATCACTATCCTATATACGTCCTGC 59.681 42.308 0.00 0.00 0.00 4.85
4296 4687 7.867305 ACATCACTATCCTATATACGTCCTG 57.133 40.000 0.00 0.00 0.00 3.86
4297 4688 9.562408 CATACATCACTATCCTATATACGTCCT 57.438 37.037 0.00 0.00 0.00 3.85
4298 4689 9.557061 TCATACATCACTATCCTATATACGTCC 57.443 37.037 0.00 0.00 0.00 4.79
4301 4692 9.833182 GCATCATACATCACTATCCTATATACG 57.167 37.037 0.00 0.00 0.00 3.06
4305 4696 9.205513 ACATGCATCATACATCACTATCCTATA 57.794 33.333 0.00 0.00 0.00 1.31
4306 4697 7.985752 CACATGCATCATACATCACTATCCTAT 59.014 37.037 0.00 0.00 0.00 2.57
4307 4698 7.038799 ACACATGCATCATACATCACTATCCTA 60.039 37.037 0.00 0.00 0.00 2.94
4308 4699 6.171213 CACATGCATCATACATCACTATCCT 58.829 40.000 0.00 0.00 0.00 3.24
4309 4700 5.936372 ACACATGCATCATACATCACTATCC 59.064 40.000 0.00 0.00 0.00 2.59
4310 4701 7.277319 CCTACACATGCATCATACATCACTATC 59.723 40.741 0.00 0.00 0.00 2.08
4363 4754 8.871862 GCTACATTATCAGATCTAGCTGAAATG 58.128 37.037 19.69 19.69 46.94 2.32
4421 4835 8.590204 TGACTTCTTTTCTTTTAAAAAGGTGGT 58.410 29.630 1.66 6.02 43.38 4.16
4441 4855 7.978975 GCCTTGGAGACATATAGATATGACTTC 59.021 40.741 14.96 12.93 42.70 3.01
4445 4859 7.898100 AGAAGCCTTGGAGACATATAGATATGA 59.102 37.037 14.96 0.00 42.05 2.15
4448 4862 8.497910 AAAGAAGCCTTGGAGACATATAGATA 57.502 34.615 0.00 0.00 42.32 1.98
4463 4877 4.793201 ACCAACTTGTCTAAAGAAGCCTT 58.207 39.130 0.00 0.00 28.90 4.35
4563 5057 4.119862 TGACTACTCAGTTGTGAACTTGC 58.880 43.478 0.00 0.00 40.46 4.01
4682 5184 6.371809 TTCATTTCTGACACACCAGTTTAC 57.628 37.500 0.00 0.00 35.71 2.01
4755 5259 1.004927 GCAGTCAAGTCACGTCAACAC 60.005 52.381 0.00 0.00 0.00 3.32
4762 5266 2.823196 TGTTTTGCAGTCAAGTCACG 57.177 45.000 0.00 0.00 33.12 4.35
4805 5309 1.944024 TCACCCGCAGTTTACACTTTG 59.056 47.619 0.00 0.00 0.00 2.77
4812 5316 4.901868 ACTCTTTAATCACCCGCAGTTTA 58.098 39.130 0.00 0.00 0.00 2.01
4832 5336 2.467566 ATCGCCGTCCTGTTAAAACT 57.532 45.000 0.00 0.00 0.00 2.66
4838 5342 2.482490 GGTATGTAATCGCCGTCCTGTT 60.482 50.000 0.00 0.00 0.00 3.16
4842 5346 3.192001 TGATAGGTATGTAATCGCCGTCC 59.808 47.826 0.00 0.00 0.00 4.79
4845 5349 5.407502 TGATTGATAGGTATGTAATCGCCG 58.592 41.667 0.00 0.00 32.01 6.46
4879 5407 0.649475 CTTCGCCATCTTTGCTCTCG 59.351 55.000 0.00 0.00 0.00 4.04
5064 5658 2.287788 CCAAGGTGCTGCTAAAGTTGTG 60.288 50.000 0.00 0.00 0.00 3.33
5071 5665 0.036732 CAGACCCAAGGTGCTGCTAA 59.963 55.000 0.00 0.00 35.25 3.09
5103 5711 1.571955 TGCTCTCATTGGCTGGAGTA 58.428 50.000 0.00 0.00 32.93 2.59
5120 5728 0.107214 TTCTCCGGTGGGAATCATGC 60.107 55.000 0.00 0.00 43.27 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.