Multiple sequence alignment - TraesCS1A01G416900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G416900 chr1A 100.000 7264 0 0 1 7264 575126114 575118851 0.000000e+00 13415.0
1 TraesCS1A01G416900 chr1A 77.218 834 118 45 3499 4284 575154385 575153576 8.710000e-114 422.0
2 TraesCS1A01G416900 chr1A 84.483 232 24 8 4948 5174 575152997 575152773 1.230000e-52 219.0
3 TraesCS1A01G416900 chr1A 87.671 73 9 0 6760 6832 513460277 513460205 1.300000e-12 86.1
4 TraesCS1A01G416900 chr1A 89.286 56 4 1 294 349 575125660 575125607 1.310000e-07 69.4
5 TraesCS1A01G416900 chr1A 89.286 56 4 1 455 508 575125821 575125766 1.310000e-07 69.4
6 TraesCS1A01G416900 chr1B 94.545 4565 155 38 2156 6680 666865955 666861445 0.000000e+00 6964.0
7 TraesCS1A01G416900 chr1B 92.619 1111 42 14 1081 2164 666871584 666870487 0.000000e+00 1561.0
8 TraesCS1A01G416900 chr1B 87.696 382 18 9 783 1140 666871966 666871590 1.130000e-112 418.0
9 TraesCS1A01G416900 chr1B 76.301 903 135 53 3499 4347 667015440 667014563 6.780000e-110 409.0
10 TraesCS1A01G416900 chr1B 97.959 196 3 1 7069 7264 544590499 544590693 9.030000e-89 339.0
11 TraesCS1A01G416900 chr1B 83.628 226 35 2 4948 5173 667014046 667013823 2.050000e-50 211.0
12 TraesCS1A01G416900 chr1B 81.227 277 29 11 5377 5653 667013295 667013042 1.240000e-47 202.0
13 TraesCS1A01G416900 chr1B 89.286 140 12 3 651 790 666872126 666871990 9.690000e-39 172.0
14 TraesCS1A01G416900 chr1B 87.500 72 9 0 6713 6784 666861444 666861373 4.670000e-12 84.2
15 TraesCS1A01G416900 chr1D 94.923 3053 104 24 4024 7064 478911677 478908664 0.000000e+00 4732.0
16 TraesCS1A01G416900 chr1D 95.355 2842 74 21 1 2809 478915762 478912946 0.000000e+00 4464.0
17 TraesCS1A01G416900 chr1D 96.435 1150 35 4 2881 4027 478912945 478911799 0.000000e+00 1892.0
18 TraesCS1A01G416900 chr1D 77.282 964 149 51 1885 2828 478932161 478931248 3.020000e-138 503.0
19 TraesCS1A01G416900 chr1D 77.298 903 123 52 3499 4348 478930525 478929652 2.390000e-124 457.0
20 TraesCS1A01G416900 chr1D 84.052 232 25 8 4948 5174 478929136 478928912 5.710000e-51 213.0
21 TraesCS1A01G416900 chr1D 81.992 261 24 10 5393 5653 478928369 478928132 4.440000e-47 200.0
22 TraesCS1A01G416900 chr1D 89.474 57 4 1 454 508 478915469 478915413 3.640000e-08 71.3
23 TraesCS1A01G416900 chr3B 97.959 196 3 1 7069 7264 39711813 39711619 9.030000e-89 339.0
24 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 199900367 199900561 4.200000e-87 333.0
25 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 216065081 216064887 4.200000e-87 333.0
26 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 220758140 220757946 4.200000e-87 333.0
27 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 282096010 282095816 4.200000e-87 333.0
28 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 399381308 399381114 4.200000e-87 333.0
29 TraesCS1A01G416900 chrUn 97.449 196 4 1 7069 7264 411342359 411342553 4.200000e-87 333.0
30 TraesCS1A01G416900 chrUn 86.250 80 10 1 6758 6837 95403185 95403263 1.300000e-12 86.1
31 TraesCS1A01G416900 chrUn 81.319 91 15 2 2751 2840 37847439 37847350 1.010000e-08 73.1
32 TraesCS1A01G416900 chr4B 97.449 196 4 1 7069 7264 34952774 34952968 4.200000e-87 333.0
33 TraesCS1A01G416900 chr6D 90.789 76 7 0 6758 6833 455084720 455084645 1.290000e-17 102.0
34 TraesCS1A01G416900 chr6D 89.552 67 7 0 6772 6838 23102107 23102173 1.300000e-12 86.1
35 TraesCS1A01G416900 chr6A 89.873 79 8 0 6759 6837 12003894 12003972 1.290000e-17 102.0
36 TraesCS1A01G416900 chr6A 91.379 58 5 0 6758 6815 615696810 615696867 6.040000e-11 80.5
37 TraesCS1A01G416900 chr2A 86.585 82 7 4 6758 6837 456752708 456752629 3.610000e-13 87.9
38 TraesCS1A01G416900 chr6B 89.552 67 6 1 88 154 135406603 135406538 4.670000e-12 84.2
39 TraesCS1A01G416900 chr3D 81.319 91 15 2 2748 2837 18131054 18131143 1.010000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G416900 chr1A 575118851 575126114 7263 True 4517.933333 13415 92.857333 1 7264 3 chr1A.!!$R2 7263
1 TraesCS1A01G416900 chr1A 575152773 575154385 1612 True 320.500000 422 80.850500 3499 5174 2 chr1A.!!$R3 1675
2 TraesCS1A01G416900 chr1B 666861373 666865955 4582 True 3524.100000 6964 91.022500 2156 6784 2 chr1B.!!$R1 4628
3 TraesCS1A01G416900 chr1B 666870487 666872126 1639 True 717.000000 1561 89.867000 651 2164 3 chr1B.!!$R2 1513
4 TraesCS1A01G416900 chr1B 667013042 667015440 2398 True 274.000000 409 80.385333 3499 5653 3 chr1B.!!$R3 2154
5 TraesCS1A01G416900 chr1D 478908664 478915762 7098 True 2789.825000 4732 94.046750 1 7064 4 chr1D.!!$R1 7063
6 TraesCS1A01G416900 chr1D 478928132 478932161 4029 True 343.250000 503 80.156000 1885 5653 4 chr1D.!!$R2 3768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.251653 AGACAGGTGGCGTCTTCCTA 60.252 55.000 4.23 0.00 40.89 2.94 F
646 648 1.202582 CCACTTCGAGTAGTCCACCTG 59.797 57.143 0.00 0.00 0.00 4.00 F
792 825 3.192844 TGAGTCCGGCTAAGTAAAGTCTG 59.807 47.826 0.00 0.00 0.00 3.51 F
1430 1576 4.330894 GTGTTAACGGTGGCTAATTAGTCC 59.669 45.833 14.38 14.86 0.00 3.85 F
2777 2956 1.193462 ATGGTGCATGGTTGGTTGGG 61.193 55.000 0.00 0.00 0.00 4.12 F
2896 3090 2.298610 GGACAATACAAGCCCCTAAGC 58.701 52.381 0.00 0.00 0.00 3.09 F
3449 3832 2.358322 TTTCGAAAGGCTTTGACCCT 57.642 45.000 18.79 0.00 0.00 4.34 F
4158 4718 0.397941 TGTCCAAAGGCAGGTGAGAG 59.602 55.000 0.00 0.00 0.00 3.20 F
4992 5580 1.446907 CTTGAGCTAGCCACAAGGTG 58.553 55.000 29.09 15.20 37.80 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1227 0.606401 TGCTTCTTCTTCGGCCTTGG 60.606 55.000 0.00 0.00 0.00 3.61 R
2589 2760 1.593265 GCACAAAAGATGCCCCCAG 59.407 57.895 0.00 0.00 37.08 4.45 R
2777 2956 4.125703 CTGCACTCAATCCACCTATTCTC 58.874 47.826 0.00 0.00 0.00 2.87 R
2862 3054 1.497309 TTGTCCCCCTGCCCTACAAG 61.497 60.000 0.00 0.00 0.00 3.16 R
3692 4087 3.947196 TGCTTCTGAGAAGCTCTAGAGAG 59.053 47.826 37.57 10.48 43.38 3.20 R
3798 4194 4.034048 GCACCAGCACTATGTGTATGTAAC 59.966 45.833 0.00 0.00 41.58 2.50 R
5065 5658 1.002069 TCGTCCTTACCCACCCTAGA 58.998 55.000 0.00 0.00 0.00 2.43 R
5942 6919 2.520979 CCAAAACGACGCACAAGAAAA 58.479 42.857 0.00 0.00 0.00 2.29 R
6956 7939 0.250989 TTGTGCGGGAGGGGTTTTAG 60.251 55.000 0.00 0.00 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.586841 AGCTAGGCCACTAACTAATCTCTG 59.413 45.833 5.01 0.00 0.00 3.35
57 58 3.476295 ACTAACAACTGAATGCATGCG 57.524 42.857 14.09 0.00 0.00 4.73
61 62 1.399440 ACAACTGAATGCATGCGCTAG 59.601 47.619 14.09 10.94 39.64 3.42
114 115 5.063204 AGTACTTACACATTGTGCACACAT 58.937 37.500 21.56 13.43 41.52 3.21
115 116 6.227522 AGTACTTACACATTGTGCACACATA 58.772 36.000 21.56 5.41 41.52 2.29
119 120 4.424061 ACACATTGTGCACACATACATC 57.576 40.909 21.56 0.00 41.52 3.06
196 197 1.490693 CCGACTGCGTGATGGTATGC 61.491 60.000 0.00 0.00 35.23 3.14
209 210 3.387716 TATGCCGTGCAGACAGGT 58.612 55.556 4.90 0.00 43.65 4.00
221 222 0.251653 AGACAGGTGGCGTCTTCCTA 60.252 55.000 4.23 0.00 40.89 2.94
237 238 2.100197 TCCTATAGGCGGGATGATTCG 58.900 52.381 14.50 0.00 34.44 3.34
266 268 5.004448 ACGTCGGATGATCTACACTATGAT 58.996 41.667 3.82 0.00 0.00 2.45
272 274 4.918810 TGATCTACACTATGATGCACGT 57.081 40.909 0.00 0.00 0.00 4.49
283 285 3.541996 TGATGCACGTGGTATCTTGAT 57.458 42.857 18.88 0.00 39.16 2.57
351 353 1.959226 GAAAGGCCGTGTCGCTCAA 60.959 57.895 0.00 0.00 0.00 3.02
360 362 1.465856 CGTGTCGCTCAAGATCTTCGA 60.466 52.381 12.28 12.28 0.00 3.71
392 394 1.682740 TCAGTCGGCATATCGGTACA 58.317 50.000 0.00 0.00 0.00 2.90
403 405 2.225068 ATCGGTACAGCTCATTTCCG 57.775 50.000 0.00 0.00 39.40 4.30
449 451 7.616313 GGATATCCCTACTACTCTTTTCCATG 58.384 42.308 11.02 0.00 0.00 3.66
450 452 7.455008 GGATATCCCTACTACTCTTTTCCATGA 59.545 40.741 11.02 0.00 0.00 3.07
452 454 5.590818 TCCCTACTACTCTTTTCCATGACT 58.409 41.667 0.00 0.00 0.00 3.41
549 551 1.835483 CTGTGTCACGCTCAAGCACC 61.835 60.000 2.50 0.00 42.21 5.01
554 556 1.956170 CACGCTCAAGCACCGAGTT 60.956 57.895 2.50 0.00 42.21 3.01
598 600 2.744202 GCTACCGCTGAAATCATATGGG 59.256 50.000 2.13 0.00 0.00 4.00
607 609 5.474532 GCTGAAATCATATGGGTGCAATCTA 59.525 40.000 2.13 0.00 0.00 1.98
608 610 6.016024 GCTGAAATCATATGGGTGCAATCTAA 60.016 38.462 2.13 0.00 0.00 2.10
616 618 5.603170 ATGGGTGCAATCTAATCTTTTGG 57.397 39.130 0.00 0.00 0.00 3.28
646 648 1.202582 CCACTTCGAGTAGTCCACCTG 59.797 57.143 0.00 0.00 0.00 4.00
663 665 3.309682 CACCTGTGTTATGGTGCGATAAG 59.690 47.826 0.00 0.00 45.68 1.73
767 769 8.452534 TGGTATTTAAACCGTTTATTGTAGCAG 58.547 33.333 4.57 0.00 42.91 4.24
792 825 3.192844 TGAGTCCGGCTAAGTAAAGTCTG 59.807 47.826 0.00 0.00 0.00 3.51
798 831 5.186409 TCCGGCTAAGTAAAGTCTGTTGTAT 59.814 40.000 0.00 0.00 0.00 2.29
937 988 5.030147 ACAATTCACCCATGTACTCTCCTA 58.970 41.667 0.00 0.00 0.00 2.94
963 1014 6.668541 AAATCATCTCTGGTCATACGTTTG 57.331 37.500 0.00 0.00 0.00 2.93
1331 1477 7.661968 TCATGCTTTGACTAGGTGTATCTATC 58.338 38.462 0.00 0.00 0.00 2.08
1430 1576 4.330894 GTGTTAACGGTGGCTAATTAGTCC 59.669 45.833 14.38 14.86 0.00 3.85
1773 1924 5.767168 TGTGATCATACATGTGTGGTTTTGA 59.233 36.000 20.82 2.58 0.00 2.69
1802 1953 8.848182 GGTATATATTACTTGGTAGGAGATCGG 58.152 40.741 0.00 0.00 0.00 4.18
2777 2956 1.193462 ATGGTGCATGGTTGGTTGGG 61.193 55.000 0.00 0.00 0.00 4.12
2792 2971 3.053693 TGGTTGGGAGAATAGGTGGATTG 60.054 47.826 0.00 0.00 0.00 2.67
2842 3033 9.264719 GCTTAGTGAGTGTTACTAAACCTTTTA 57.735 33.333 0.00 0.00 39.40 1.52
2896 3090 2.298610 GGACAATACAAGCCCCTAAGC 58.701 52.381 0.00 0.00 0.00 3.09
3018 3240 5.697473 TCGCTCTATATTTCAGAGACTGG 57.303 43.478 5.35 0.00 41.80 4.00
3052 3274 5.637006 TTTATTCACAATGGGAAAGACCG 57.363 39.130 0.61 0.00 40.11 4.79
3088 3317 7.234988 ACTTGGAGAAAGGTGTAACACTATAGT 59.765 37.037 0.00 0.00 40.51 2.12
3188 3541 6.460123 CCGGATTACTCAAAATTAGCAAGCAT 60.460 38.462 0.00 0.00 0.00 3.79
3242 3603 6.544650 TGGGCTTACAATAGGAAAAACTGTA 58.455 36.000 0.00 0.00 0.00 2.74
3377 3760 3.799281 TGGCTTTGGAGTTTGTTCTTG 57.201 42.857 0.00 0.00 0.00 3.02
3445 3828 5.007034 TCCACATATTTCGAAAGGCTTTGA 58.993 37.500 18.79 12.08 0.00 2.69
3449 3832 2.358322 TTTCGAAAGGCTTTGACCCT 57.642 45.000 18.79 0.00 0.00 4.34
3539 3924 6.484288 TCTTGTCATGTATGAATTTCAGGGT 58.516 36.000 5.21 0.00 38.75 4.34
3692 4087 3.190118 CACTCAGCCCTTCACTCAATTTC 59.810 47.826 0.00 0.00 0.00 2.17
3970 4380 9.860898 AGATGCCTTTTATGTATGTTTCTTTTC 57.139 29.630 0.00 0.00 0.00 2.29
3983 4416 6.497785 TGTTTCTTTTCACGGTCAACTAAA 57.502 33.333 0.00 0.00 0.00 1.85
4068 4628 5.233957 TGCCTTGATTGAATCATTACACG 57.766 39.130 8.90 0.00 39.39 4.49
4157 4717 0.843309 TTGTCCAAAGGCAGGTGAGA 59.157 50.000 0.00 0.00 0.00 3.27
4158 4718 0.397941 TGTCCAAAGGCAGGTGAGAG 59.602 55.000 0.00 0.00 0.00 3.20
4564 5137 4.093261 CGTTGAATGCATCATCTGTACACA 59.907 41.667 0.00 0.00 38.03 3.72
4706 5285 8.613060 ATGCTATGTGAATGTTAGTAGAATGG 57.387 34.615 0.00 0.00 0.00 3.16
4761 5340 7.427989 AGGAATTAAAGGATGCACAATCAAT 57.572 32.000 0.00 0.00 36.98 2.57
4763 5342 7.983484 AGGAATTAAAGGATGCACAATCAATTC 59.017 33.333 0.00 0.82 36.98 2.17
4770 5349 7.273320 AGGATGCACAATCAATTCTGAATAG 57.727 36.000 2.85 0.00 36.98 1.73
4936 5521 9.078990 CATTAGGTATACTCTGTGATTCCTACA 57.921 37.037 2.25 0.00 0.00 2.74
4963 5551 9.685828 GAAGCAACCAAAATTACAAACTACATA 57.314 29.630 0.00 0.00 0.00 2.29
4992 5580 1.446907 CTTGAGCTAGCCACAAGGTG 58.553 55.000 29.09 15.20 37.80 4.00
5032 5620 8.367943 TCATGGTTTTCAGTTTTTCATCAATG 57.632 30.769 0.00 0.00 0.00 2.82
5155 5748 6.579865 TGGCAGGCTAATAAGAACTTACTAC 58.420 40.000 0.00 0.00 0.00 2.73
5459 6436 6.455690 AGTTAGGTCCCTCAAAATCTTCTT 57.544 37.500 0.00 0.00 0.00 2.52
5708 6685 4.466827 GAACCTCCTTGTTGTTTTCCCTA 58.533 43.478 0.00 0.00 0.00 3.53
5710 6687 3.203487 ACCTCCTTGTTGTTTTCCCTACA 59.797 43.478 0.00 0.00 0.00 2.74
5903 6880 8.840321 CCCTAAATCGATAATGTCATCTTGTTT 58.160 33.333 0.00 0.00 0.00 2.83
5941 6918 9.574577 TTCCATATATAGTGGACTTATGGGATT 57.425 33.333 12.86 0.00 45.05 3.01
5942 6919 9.574577 TCCATATATAGTGGACTTATGGGATTT 57.425 33.333 12.86 0.00 40.72 2.17
6150 7127 1.320344 CCACTGATGGCTGCTGCAAT 61.320 55.000 17.89 11.89 39.82 3.56
6236 7213 3.810386 TCCATGTCGACGATCTAAGAGAG 59.190 47.826 11.62 0.00 0.00 3.20
6361 7340 9.424319 CACATCTGAGTTAGTATTTAGTGTTGT 57.576 33.333 0.00 0.00 0.00 3.32
6547 7530 1.153549 GACCGTTAGAGCTGGCCTG 60.154 63.158 3.32 4.26 0.00 4.85
6693 7676 1.275505 GGCGAGGTAGTTTCGTTAGC 58.724 55.000 0.00 0.00 40.08 3.09
6702 7685 3.669251 AGTTTCGTTAGCAGAGCTCTT 57.331 42.857 15.27 2.80 40.44 2.85
6754 7737 8.981724 TGTGCTAAATCTACAACTAGTTACTG 57.018 34.615 8.04 0.00 0.00 2.74
6770 7753 5.503927 AGTTACTGATGGCATCTTCAACAT 58.496 37.500 26.49 13.58 0.00 2.71
6794 7777 2.902846 TCAAACCACCCGCAACCG 60.903 61.111 0.00 0.00 0.00 4.44
6853 7836 2.506065 GGACTAGTCCGGATGCACT 58.494 57.895 25.83 2.42 40.36 4.40
6900 7883 2.472934 CTTTGCGGGCGTTCGTAC 59.527 61.111 2.03 0.00 0.00 3.67
6931 7914 1.421410 CCGCGTCTGACTAACATGGC 61.421 60.000 4.92 0.00 0.00 4.40
6935 7918 1.739067 GTCTGACTAACATGGCCCAC 58.261 55.000 0.00 0.00 0.00 4.61
6945 7928 0.975556 CATGGCCCACCTAAAACCCC 60.976 60.000 0.00 0.00 36.63 4.95
6946 7929 1.153041 ATGGCCCACCTAAAACCCCT 61.153 55.000 0.00 0.00 36.63 4.79
6947 7930 0.477993 TGGCCCACCTAAAACCCCTA 60.478 55.000 0.00 0.00 36.63 3.53
6948 7931 0.931468 GGCCCACCTAAAACCCCTAT 59.069 55.000 0.00 0.00 0.00 2.57
6949 7932 1.411074 GGCCCACCTAAAACCCCTATG 60.411 57.143 0.00 0.00 0.00 2.23
6950 7933 1.411074 GCCCACCTAAAACCCCTATGG 60.411 57.143 0.00 0.00 41.37 2.74
6951 7934 1.411074 CCCACCTAAAACCCCTATGGC 60.411 57.143 0.00 0.00 37.83 4.40
6952 7935 1.411074 CCACCTAAAACCCCTATGGCC 60.411 57.143 0.00 0.00 37.83 5.36
6953 7936 0.931468 ACCTAAAACCCCTATGGCCC 59.069 55.000 0.00 0.00 37.83 5.80
6954 7937 0.930726 CCTAAAACCCCTATGGCCCA 59.069 55.000 0.00 0.00 37.83 5.36
6955 7938 1.411074 CCTAAAACCCCTATGGCCCAC 60.411 57.143 0.00 0.00 37.83 4.61
6956 7939 0.632294 TAAAACCCCTATGGCCCACC 59.368 55.000 0.00 0.00 37.83 4.61
6957 7940 1.153041 AAAACCCCTATGGCCCACCT 61.153 55.000 0.00 0.00 37.83 4.00
6958 7941 0.253915 AAACCCCTATGGCCCACCTA 60.254 55.000 0.00 0.00 37.83 3.08
6959 7942 0.253915 AACCCCTATGGCCCACCTAA 60.254 55.000 0.00 0.00 37.83 2.69
6960 7943 0.253915 ACCCCTATGGCCCACCTAAA 60.254 55.000 0.00 0.00 37.83 1.85
6961 7944 0.930726 CCCCTATGGCCCACCTAAAA 59.069 55.000 0.00 0.00 36.63 1.52
6962 7945 1.411074 CCCCTATGGCCCACCTAAAAC 60.411 57.143 0.00 0.00 36.63 2.43
6963 7946 1.411074 CCCTATGGCCCACCTAAAACC 60.411 57.143 0.00 0.00 36.63 3.27
6964 7947 1.411074 CCTATGGCCCACCTAAAACCC 60.411 57.143 0.00 0.00 36.63 4.11
6965 7948 0.632294 TATGGCCCACCTAAAACCCC 59.368 55.000 0.00 0.00 36.63 4.95
6977 7960 2.994643 AAAACCCCTCCCGCACAAGG 62.995 60.000 0.00 0.00 0.00 3.61
7064 8068 1.171549 TCAAGCGCATTGAAGTGGCA 61.172 50.000 11.47 0.00 45.00 4.92
7065 8069 0.318869 CAAGCGCATTGAAGTGGCAA 60.319 50.000 11.47 0.00 41.83 4.52
7066 8070 0.038892 AAGCGCATTGAAGTGGCAAG 60.039 50.000 11.47 0.00 0.00 4.01
7067 8071 0.890542 AGCGCATTGAAGTGGCAAGA 60.891 50.000 11.47 0.00 0.00 3.02
7068 8072 0.039256 GCGCATTGAAGTGGCAAGAA 60.039 50.000 0.30 0.00 0.00 2.52
7069 8073 1.602668 GCGCATTGAAGTGGCAAGAAA 60.603 47.619 0.30 0.00 0.00 2.52
7070 8074 2.741612 CGCATTGAAGTGGCAAGAAAA 58.258 42.857 0.00 0.00 0.00 2.29
7071 8075 3.122297 CGCATTGAAGTGGCAAGAAAAA 58.878 40.909 0.00 0.00 0.00 1.94
7072 8076 3.742369 CGCATTGAAGTGGCAAGAAAAAT 59.258 39.130 0.00 0.00 0.00 1.82
7073 8077 4.143263 CGCATTGAAGTGGCAAGAAAAATC 60.143 41.667 0.00 0.00 0.00 2.17
7074 8078 4.751098 GCATTGAAGTGGCAAGAAAAATCA 59.249 37.500 0.00 0.00 0.00 2.57
7075 8079 5.333568 GCATTGAAGTGGCAAGAAAAATCAC 60.334 40.000 0.00 0.00 0.00 3.06
7076 8080 4.320608 TGAAGTGGCAAGAAAAATCACC 57.679 40.909 0.00 0.00 0.00 4.02
7077 8081 3.069443 TGAAGTGGCAAGAAAAATCACCC 59.931 43.478 0.00 0.00 0.00 4.61
7078 8082 1.613437 AGTGGCAAGAAAAATCACCCG 59.387 47.619 0.00 0.00 0.00 5.28
7079 8083 1.339929 GTGGCAAGAAAAATCACCCGT 59.660 47.619 0.00 0.00 0.00 5.28
7080 8084 1.339610 TGGCAAGAAAAATCACCCGTG 59.660 47.619 0.00 0.00 0.00 4.94
7081 8085 1.339929 GGCAAGAAAAATCACCCGTGT 59.660 47.619 0.00 0.00 0.00 4.49
7082 8086 2.223947 GGCAAGAAAAATCACCCGTGTT 60.224 45.455 0.00 0.00 0.00 3.32
7083 8087 3.049912 GCAAGAAAAATCACCCGTGTTC 58.950 45.455 0.00 0.00 0.00 3.18
7084 8088 3.490078 GCAAGAAAAATCACCCGTGTTCA 60.490 43.478 0.00 0.00 0.00 3.18
7085 8089 3.982576 AGAAAAATCACCCGTGTTCAC 57.017 42.857 0.00 0.00 0.00 3.18
7086 8090 2.289547 AGAAAAATCACCCGTGTTCACG 59.710 45.455 16.87 16.87 0.00 4.35
7087 8091 1.670791 AAAATCACCCGTGTTCACGT 58.329 45.000 20.93 3.96 0.00 4.49
7088 8092 2.529780 AAATCACCCGTGTTCACGTA 57.470 45.000 20.93 6.91 0.00 3.57
7089 8093 1.787012 AATCACCCGTGTTCACGTAC 58.213 50.000 20.93 0.00 0.00 3.67
7090 8094 0.387622 ATCACCCGTGTTCACGTACG 60.388 55.000 20.93 15.01 39.83 3.67
7091 8095 2.355009 ACCCGTGTTCACGTACGC 60.355 61.111 16.72 0.00 38.87 4.42
7092 8096 3.107661 CCCGTGTTCACGTACGCC 61.108 66.667 16.72 1.35 38.87 5.68
7093 8097 3.107661 CCGTGTTCACGTACGCCC 61.108 66.667 16.72 0.97 38.87 6.13
7094 8098 2.354891 CGTGTTCACGTACGCCCA 60.355 61.111 16.72 3.86 33.25 5.36
7095 8099 1.735198 CGTGTTCACGTACGCCCAT 60.735 57.895 16.72 0.00 33.25 4.00
7096 8100 1.680105 CGTGTTCACGTACGCCCATC 61.680 60.000 16.72 3.24 33.25 3.51
7097 8101 1.079681 TGTTCACGTACGCCCATCC 60.080 57.895 16.72 0.00 0.00 3.51
7098 8102 1.217244 GTTCACGTACGCCCATCCT 59.783 57.895 16.72 0.00 0.00 3.24
7099 8103 0.390735 GTTCACGTACGCCCATCCTT 60.391 55.000 16.72 0.00 0.00 3.36
7100 8104 0.322322 TTCACGTACGCCCATCCTTT 59.678 50.000 16.72 0.00 0.00 3.11
7101 8105 0.108520 TCACGTACGCCCATCCTTTC 60.109 55.000 16.72 0.00 0.00 2.62
7102 8106 1.087771 CACGTACGCCCATCCTTTCC 61.088 60.000 16.72 0.00 0.00 3.13
7103 8107 1.523032 CGTACGCCCATCCTTTCCC 60.523 63.158 0.52 0.00 0.00 3.97
7104 8108 1.605453 GTACGCCCATCCTTTCCCA 59.395 57.895 0.00 0.00 0.00 4.37
7105 8109 0.034863 GTACGCCCATCCTTTCCCAA 60.035 55.000 0.00 0.00 0.00 4.12
7106 8110 0.034863 TACGCCCATCCTTTCCCAAC 60.035 55.000 0.00 0.00 0.00 3.77
7107 8111 2.406616 CGCCCATCCTTTCCCAACG 61.407 63.158 0.00 0.00 0.00 4.10
7108 8112 1.304134 GCCCATCCTTTCCCAACGT 60.304 57.895 0.00 0.00 0.00 3.99
7109 8113 0.898326 GCCCATCCTTTCCCAACGTT 60.898 55.000 0.00 0.00 0.00 3.99
7110 8114 0.887933 CCCATCCTTTCCCAACGTTG 59.112 55.000 21.47 21.47 0.00 4.10
7111 8115 0.243636 CCATCCTTTCCCAACGTTGC 59.756 55.000 22.93 0.00 0.00 4.17
7112 8116 0.243636 CATCCTTTCCCAACGTTGCC 59.756 55.000 22.93 0.00 0.00 4.52
7113 8117 0.112412 ATCCTTTCCCAACGTTGCCT 59.888 50.000 22.93 0.00 0.00 4.75
7114 8118 0.536460 TCCTTTCCCAACGTTGCCTC 60.536 55.000 22.93 0.00 0.00 4.70
7115 8119 1.574428 CTTTCCCAACGTTGCCTCG 59.426 57.895 22.93 8.95 0.00 4.63
7116 8120 1.852067 CTTTCCCAACGTTGCCTCGG 61.852 60.000 22.93 17.59 34.94 4.63
7117 8121 2.326773 TTTCCCAACGTTGCCTCGGA 62.327 55.000 22.93 19.56 34.94 4.55
7118 8122 2.046314 CCCAACGTTGCCTCGGAT 60.046 61.111 22.93 0.00 34.94 4.18
7119 8123 2.398554 CCCAACGTTGCCTCGGATG 61.399 63.158 22.93 6.36 34.94 3.51
7120 8124 1.671054 CCAACGTTGCCTCGGATGT 60.671 57.895 22.93 0.00 34.94 3.06
7121 8125 1.635663 CCAACGTTGCCTCGGATGTC 61.636 60.000 22.93 0.00 34.94 3.06
7122 8126 1.375523 AACGTTGCCTCGGATGTCC 60.376 57.895 0.00 0.00 34.94 4.02
7123 8127 2.511600 CGTTGCCTCGGATGTCCC 60.512 66.667 0.00 0.00 0.00 4.46
7133 8137 2.601562 GGATGTCCCGTCGTTATGC 58.398 57.895 0.00 0.00 0.00 3.14
7134 8138 0.878961 GGATGTCCCGTCGTTATGCC 60.879 60.000 0.00 0.00 0.00 4.40
7135 8139 0.179094 GATGTCCCGTCGTTATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
7136 8140 0.468226 ATGTCCCGTCGTTATGCCAT 59.532 50.000 0.00 0.00 0.00 4.40
7137 8141 0.179094 TGTCCCGTCGTTATGCCATC 60.179 55.000 0.00 0.00 0.00 3.51
7138 8142 0.179094 GTCCCGTCGTTATGCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
7139 8143 0.179094 TCCCGTCGTTATGCCATCAC 60.179 55.000 0.00 0.00 0.00 3.06
7140 8144 1.487452 CCCGTCGTTATGCCATCACG 61.487 60.000 5.07 5.07 35.18 4.35
7141 8145 0.526739 CCGTCGTTATGCCATCACGA 60.527 55.000 9.87 9.87 40.53 4.35
7142 8146 1.273688 CGTCGTTATGCCATCACGAA 58.726 50.000 15.01 0.00 44.10 3.85
7143 8147 1.255342 CGTCGTTATGCCATCACGAAG 59.745 52.381 15.01 13.26 44.10 3.79
7144 8148 1.593006 GTCGTTATGCCATCACGAAGG 59.407 52.381 15.01 0.00 44.10 3.46
7145 8149 1.206132 TCGTTATGCCATCACGAAGGT 59.794 47.619 11.39 0.00 39.88 3.50
7146 8150 1.327460 CGTTATGCCATCACGAAGGTG 59.673 52.381 5.50 0.00 45.78 4.00
7147 8151 2.356135 GTTATGCCATCACGAAGGTGT 58.644 47.619 0.00 0.00 44.68 4.16
7148 8152 2.747446 GTTATGCCATCACGAAGGTGTT 59.253 45.455 0.00 0.00 44.68 3.32
7149 8153 1.167851 ATGCCATCACGAAGGTGTTG 58.832 50.000 0.00 0.00 44.68 3.33
7152 8156 1.875963 CATCACGAAGGTGTTGGCC 59.124 57.895 0.00 0.00 44.68 5.36
7153 8157 1.303317 ATCACGAAGGTGTTGGCCC 60.303 57.895 0.00 0.00 44.68 5.80
7154 8158 3.353836 CACGAAGGTGTTGGCCCG 61.354 66.667 0.00 0.00 39.38 6.13
7155 8159 4.636435 ACGAAGGTGTTGGCCCGG 62.636 66.667 0.00 0.00 0.00 5.73
7156 8160 4.636435 CGAAGGTGTTGGCCCGGT 62.636 66.667 0.00 0.00 0.00 5.28
7157 8161 2.671963 GAAGGTGTTGGCCCGGTC 60.672 66.667 0.00 0.00 0.00 4.79
7158 8162 4.280019 AAGGTGTTGGCCCGGTCC 62.280 66.667 0.00 0.00 0.00 4.46
7168 8172 4.120331 CCCGGTCCCGTGTACGTC 62.120 72.222 0.00 0.00 37.74 4.34
7169 8173 3.058160 CCGGTCCCGTGTACGTCT 61.058 66.667 4.84 0.00 37.74 4.18
7170 8174 2.482374 CGGTCCCGTGTACGTCTC 59.518 66.667 0.00 0.00 37.74 3.36
7171 8175 2.482374 GGTCCCGTGTACGTCTCG 59.518 66.667 0.00 0.00 37.74 4.04
7172 8176 2.328099 GGTCCCGTGTACGTCTCGT 61.328 63.158 0.00 0.00 44.35 4.18
7173 8177 1.154338 GTCCCGTGTACGTCTCGTG 60.154 63.158 0.00 0.00 41.39 4.35
7174 8178 1.301637 TCCCGTGTACGTCTCGTGA 60.302 57.895 0.00 0.00 41.39 4.35
7175 8179 1.134075 CCCGTGTACGTCTCGTGAG 59.866 63.158 0.00 0.00 41.39 3.51
7176 8180 1.293963 CCCGTGTACGTCTCGTGAGA 61.294 60.000 0.00 0.00 41.39 3.27
7177 8181 0.514255 CCGTGTACGTCTCGTGAGAA 59.486 55.000 0.22 0.00 41.39 2.87
7178 8182 1.069703 CCGTGTACGTCTCGTGAGAAA 60.070 52.381 0.22 0.00 41.39 2.52
7179 8183 2.413765 CCGTGTACGTCTCGTGAGAAAT 60.414 50.000 0.22 0.00 41.39 2.17
7180 8184 3.231965 CGTGTACGTCTCGTGAGAAATT 58.768 45.455 0.22 0.00 41.39 1.82
7181 8185 3.297461 CGTGTACGTCTCGTGAGAAATTC 59.703 47.826 0.22 0.00 41.39 2.17
7182 8186 4.474113 GTGTACGTCTCGTGAGAAATTCT 58.526 43.478 0.22 0.00 41.39 2.40
7183 8187 4.321217 GTGTACGTCTCGTGAGAAATTCTG 59.679 45.833 0.00 0.00 41.39 3.02
7184 8188 3.917329 ACGTCTCGTGAGAAATTCTGA 57.083 42.857 0.00 0.00 39.18 3.27
7185 8189 3.566523 ACGTCTCGTGAGAAATTCTGAC 58.433 45.455 0.00 0.46 39.18 3.51
7186 8190 2.917971 CGTCTCGTGAGAAATTCTGACC 59.082 50.000 7.00 0.00 41.32 4.02
7187 8191 3.254892 GTCTCGTGAGAAATTCTGACCC 58.745 50.000 7.00 0.00 41.32 4.46
7188 8192 2.897326 TCTCGTGAGAAATTCTGACCCA 59.103 45.455 7.00 0.00 41.32 4.51
7189 8193 3.323691 TCTCGTGAGAAATTCTGACCCAA 59.676 43.478 7.00 0.00 41.32 4.12
7190 8194 3.399330 TCGTGAGAAATTCTGACCCAAC 58.601 45.455 7.00 0.00 37.03 3.77
7191 8195 3.138304 CGTGAGAAATTCTGACCCAACA 58.862 45.455 7.00 0.00 25.96 3.33
7192 8196 3.187227 CGTGAGAAATTCTGACCCAACAG 59.813 47.826 7.00 0.00 39.02 3.16
7193 8197 3.057946 GTGAGAAATTCTGACCCAACAGC 60.058 47.826 0.00 0.00 37.75 4.40
7194 8198 2.489722 GAGAAATTCTGACCCAACAGCC 59.510 50.000 0.00 0.00 37.75 4.85
7195 8199 1.200020 GAAATTCTGACCCAACAGCCG 59.800 52.381 0.00 0.00 37.75 5.52
7196 8200 0.400213 AATTCTGACCCAACAGCCGA 59.600 50.000 0.00 0.00 37.75 5.54
7197 8201 0.400213 ATTCTGACCCAACAGCCGAA 59.600 50.000 0.00 0.00 37.75 4.30
7198 8202 0.250295 TTCTGACCCAACAGCCGAAG 60.250 55.000 0.00 0.00 37.75 3.79
7211 8215 3.068881 CGAAGGTGGCTCAGGGAA 58.931 61.111 0.00 0.00 0.00 3.97
7212 8216 1.376037 CGAAGGTGGCTCAGGGAAC 60.376 63.158 0.00 0.00 0.00 3.62
7213 8217 1.761174 GAAGGTGGCTCAGGGAACA 59.239 57.895 0.00 0.00 0.00 3.18
7214 8218 0.322008 GAAGGTGGCTCAGGGAACAG 60.322 60.000 0.00 0.00 0.00 3.16
7215 8219 1.783250 AAGGTGGCTCAGGGAACAGG 61.783 60.000 0.00 0.00 0.00 4.00
7216 8220 2.224159 GGTGGCTCAGGGAACAGGA 61.224 63.158 0.00 0.00 0.00 3.86
7217 8221 1.761174 GTGGCTCAGGGAACAGGAA 59.239 57.895 0.00 0.00 0.00 3.36
7218 8222 0.110486 GTGGCTCAGGGAACAGGAAA 59.890 55.000 0.00 0.00 0.00 3.13
7219 8223 0.401738 TGGCTCAGGGAACAGGAAAG 59.598 55.000 0.00 0.00 0.00 2.62
7220 8224 0.402121 GGCTCAGGGAACAGGAAAGT 59.598 55.000 0.00 0.00 0.00 2.66
7221 8225 1.628846 GGCTCAGGGAACAGGAAAGTA 59.371 52.381 0.00 0.00 0.00 2.24
7222 8226 2.615747 GGCTCAGGGAACAGGAAAGTAC 60.616 54.545 0.00 0.00 0.00 2.73
7223 8227 2.615747 GCTCAGGGAACAGGAAAGTACC 60.616 54.545 0.00 0.00 0.00 3.34
7224 8228 1.982958 TCAGGGAACAGGAAAGTACCC 59.017 52.381 0.00 0.00 37.79 3.69
7225 8229 1.004394 CAGGGAACAGGAAAGTACCCC 59.996 57.143 0.00 0.00 38.22 4.95
7226 8230 0.035725 GGGAACAGGAAAGTACCCCG 60.036 60.000 0.00 0.00 0.00 5.73
7227 8231 0.689055 GGAACAGGAAAGTACCCCGT 59.311 55.000 0.00 0.00 0.00 5.28
7228 8232 1.072806 GGAACAGGAAAGTACCCCGTT 59.927 52.381 0.00 0.00 0.00 4.44
7229 8233 2.148768 GAACAGGAAAGTACCCCGTTG 58.851 52.381 0.00 0.00 0.00 4.10
7230 8234 0.250597 ACAGGAAAGTACCCCGTTGC 60.251 55.000 0.00 0.00 0.00 4.17
7231 8235 1.004200 AGGAAAGTACCCCGTTGCG 60.004 57.895 0.00 0.00 0.00 4.85
7232 8236 1.301953 GGAAAGTACCCCGTTGCGT 60.302 57.895 0.00 0.00 0.00 5.24
7233 8237 0.037419 GGAAAGTACCCCGTTGCGTA 60.037 55.000 0.00 0.00 0.00 4.42
7234 8238 1.070821 GAAAGTACCCCGTTGCGTAC 58.929 55.000 0.00 0.00 36.01 3.67
7235 8239 0.392336 AAAGTACCCCGTTGCGTACA 59.608 50.000 0.00 0.00 37.83 2.90
7236 8240 0.609662 AAGTACCCCGTTGCGTACAT 59.390 50.000 0.00 0.00 37.83 2.29
7237 8241 0.108520 AGTACCCCGTTGCGTACATG 60.109 55.000 0.00 0.00 37.83 3.21
7238 8242 0.108709 GTACCCCGTTGCGTACATGA 60.109 55.000 0.00 0.00 35.86 3.07
7239 8243 0.825410 TACCCCGTTGCGTACATGAT 59.175 50.000 0.00 0.00 0.00 2.45
7240 8244 0.461339 ACCCCGTTGCGTACATGATC 60.461 55.000 0.00 0.00 0.00 2.92
7241 8245 1.157870 CCCCGTTGCGTACATGATCC 61.158 60.000 0.00 0.00 0.00 3.36
7242 8246 1.487452 CCCGTTGCGTACATGATCCG 61.487 60.000 0.00 0.00 0.00 4.18
7243 8247 0.526739 CCGTTGCGTACATGATCCGA 60.527 55.000 0.00 0.00 0.00 4.55
7244 8248 0.570734 CGTTGCGTACATGATCCGAC 59.429 55.000 0.00 0.00 0.00 4.79
7245 8249 0.928229 GTTGCGTACATGATCCGACC 59.072 55.000 0.00 0.00 0.00 4.79
7246 8250 0.526739 TTGCGTACATGATCCGACCG 60.527 55.000 0.00 0.00 0.00 4.79
7247 8251 1.357690 GCGTACATGATCCGACCGA 59.642 57.895 0.00 0.00 0.00 4.69
7248 8252 0.933509 GCGTACATGATCCGACCGAC 60.934 60.000 0.00 0.00 0.00 4.79
7249 8253 0.656495 CGTACATGATCCGACCGACG 60.656 60.000 0.00 0.00 42.18 5.12
7258 8262 4.950744 CGACCGACGGTAAACAGT 57.049 55.556 21.79 0.00 35.25 3.55
7259 8263 2.716988 CGACCGACGGTAAACAGTC 58.283 57.895 21.79 4.39 35.25 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.801350 TCAGTTGTTAGTTAGATGCATGC 57.199 39.130 11.82 11.82 0.00 4.06
57 58 4.030134 ACAAGTAGTACATGTCGCTAGC 57.970 45.455 0.00 4.06 0.00 3.42
61 62 4.862574 TCAATGACAAGTAGTACATGTCGC 59.137 41.667 25.47 10.87 46.38 5.19
114 115 5.221621 TGACATGTGACTTGTGAAGGATGTA 60.222 40.000 1.15 0.00 0.00 2.29
115 116 4.067896 GACATGTGACTTGTGAAGGATGT 58.932 43.478 1.15 0.00 0.00 3.06
119 120 4.129380 TCTTGACATGTGACTTGTGAAGG 58.871 43.478 23.09 10.54 38.39 3.46
206 207 1.705873 CCTATAGGAAGACGCCACCT 58.294 55.000 14.11 0.00 37.39 4.00
209 210 1.461091 CCGCCTATAGGAAGACGCCA 61.461 60.000 23.61 0.00 37.39 5.69
237 238 0.029567 AGATCATCCGACGTCGAAGC 59.970 55.000 37.65 21.54 43.02 3.86
241 242 1.598132 AGTGTAGATCATCCGACGTCG 59.402 52.381 30.33 30.33 39.44 5.12
266 268 1.368641 GCATCAAGATACCACGTGCA 58.631 50.000 10.91 0.00 0.00 4.57
272 274 0.106708 GGCTCCGCATCAAGATACCA 59.893 55.000 0.00 0.00 0.00 3.25
283 285 4.329545 GGTCCACTTGGCTCCGCA 62.330 66.667 0.00 0.00 34.44 5.69
292 294 4.539083 TGCGTGCGTGGTCCACTT 62.539 61.111 19.82 0.00 31.34 3.16
351 353 1.067821 GGACATCGGCTTCGAAGATCT 59.932 52.381 28.95 6.74 46.60 2.75
360 362 0.108615 CGACTGAAGGACATCGGCTT 60.109 55.000 0.00 0.00 0.00 4.35
392 394 0.537188 ATCGGTCACGGAAATGAGCT 59.463 50.000 0.00 0.00 43.47 4.09
403 405 1.061131 CGATTGAAGCACATCGGTCAC 59.939 52.381 0.00 0.00 33.40 3.67
447 449 1.293498 GTGCGGTCCACTCAGTCAT 59.707 57.895 0.00 0.00 41.35 3.06
449 451 1.664965 GTGTGCGGTCCACTCAGTC 60.665 63.158 0.00 0.00 44.92 3.51
450 452 2.421739 GTGTGCGGTCCACTCAGT 59.578 61.111 0.00 0.00 44.92 3.41
452 454 4.961511 GCGTGTGCGGTCCACTCA 62.962 66.667 0.00 0.00 44.92 3.41
482 484 2.876645 CTTGTCGCGCTCTCGGTC 60.877 66.667 5.56 0.00 35.95 4.79
501 503 0.250684 TCCAAGCATTCCAAGCGACA 60.251 50.000 0.00 0.00 37.01 4.35
549 551 3.306166 CCAACGCCTTATACTCAAACTCG 59.694 47.826 0.00 0.00 0.00 4.18
554 556 4.475051 TTAGCCAACGCCTTATACTCAA 57.525 40.909 0.00 0.00 34.57 3.02
598 600 7.147976 ACAAGTTCCAAAAGATTAGATTGCAC 58.852 34.615 0.00 0.00 0.00 4.57
607 609 5.140454 AGTGGCTACAAGTTCCAAAAGATT 58.860 37.500 2.02 0.00 0.00 2.40
608 610 4.729868 AGTGGCTACAAGTTCCAAAAGAT 58.270 39.130 2.02 0.00 0.00 2.40
616 618 3.027974 ACTCGAAGTGGCTACAAGTTC 57.972 47.619 2.02 0.00 0.00 3.01
646 648 4.631133 CGATCTTATCGCACCATAACAC 57.369 45.455 0.00 0.00 46.55 3.32
663 665 3.782046 AGGTATATATGTTGCGCCGATC 58.218 45.455 4.18 0.00 0.00 3.69
767 769 5.067544 AGACTTTACTTAGCCGGACTCATAC 59.932 44.000 5.05 0.00 0.00 2.39
908 943 9.561069 GAGAGTACATGGGTGAATTGTATATTT 57.439 33.333 0.00 0.00 0.00 1.40
926 962 7.147828 CCAGAGATGATTTTGTAGGAGAGTACA 60.148 40.741 0.00 0.00 0.00 2.90
928 964 6.897966 ACCAGAGATGATTTTGTAGGAGAGTA 59.102 38.462 0.00 0.00 0.00 2.59
929 965 5.723887 ACCAGAGATGATTTTGTAGGAGAGT 59.276 40.000 0.00 0.00 0.00 3.24
937 988 5.734720 ACGTATGACCAGAGATGATTTTGT 58.265 37.500 0.00 0.00 0.00 2.83
1098 1226 1.927608 GCTTCTTCTTCGGCCTTGGC 61.928 60.000 0.00 2.49 0.00 4.52
1099 1227 0.606401 TGCTTCTTCTTCGGCCTTGG 60.606 55.000 0.00 0.00 0.00 3.61
1100 1228 1.131883 CATGCTTCTTCTTCGGCCTTG 59.868 52.381 0.00 0.00 0.00 3.61
1101 1229 1.003580 TCATGCTTCTTCTTCGGCCTT 59.996 47.619 0.00 0.00 0.00 4.35
1102 1230 0.615331 TCATGCTTCTTCTTCGGCCT 59.385 50.000 0.00 0.00 0.00 5.19
1103 1231 0.729690 GTCATGCTTCTTCTTCGGCC 59.270 55.000 0.00 0.00 0.00 6.13
1331 1477 1.091771 AATCAACGGAGCATCGGCAG 61.092 55.000 3.90 0.00 44.61 4.85
1430 1576 8.844441 TCAACTTTTTGTAAACTTAATCCGTG 57.156 30.769 0.00 0.00 34.02 4.94
1612 1760 3.582647 TCCCAGCTTGATTGAAGTAGTCA 59.417 43.478 0.00 0.00 33.73 3.41
1802 1953 2.295253 ACCCATTGATCTTCGTCGAC 57.705 50.000 5.18 5.18 0.00 4.20
1818 1969 3.317603 AGCAATGCATACACAAAACCC 57.682 42.857 8.35 0.00 0.00 4.11
2589 2760 1.593265 GCACAAAAGATGCCCCCAG 59.407 57.895 0.00 0.00 37.08 4.45
2777 2956 4.125703 CTGCACTCAATCCACCTATTCTC 58.874 47.826 0.00 0.00 0.00 2.87
2792 2971 2.413142 GCATTGAGCCCCTGCACTC 61.413 63.158 0.00 0.00 41.13 3.51
2861 3053 1.923909 GTCCCCCTGCCCTACAAGT 60.924 63.158 0.00 0.00 0.00 3.16
2862 3054 1.497309 TTGTCCCCCTGCCCTACAAG 61.497 60.000 0.00 0.00 0.00 3.16
2896 3090 5.291128 AGAAGTGGATTCTAAAATGTACGCG 59.709 40.000 3.53 3.53 46.75 6.01
3018 3240 7.383843 CCCATTGTGAATAAAACAGTGTAAACC 59.616 37.037 0.00 0.00 34.46 3.27
3052 3274 3.189287 CCTTTCTCCAAGTGCATGTGTAC 59.811 47.826 0.00 0.00 0.00 2.90
3188 3541 9.197306 ACCAGTTGATACATGTAATAGACTACA 57.803 33.333 10.14 0.00 36.27 2.74
3242 3603 6.884295 TGTATTATGCTTCAGCCTACAACTTT 59.116 34.615 0.00 0.00 41.18 2.66
3377 3760 3.428532 AGGAAGCCATCATATGAATGCC 58.571 45.455 20.24 11.16 32.76 4.40
3692 4087 3.947196 TGCTTCTGAGAAGCTCTAGAGAG 59.053 47.826 37.57 10.48 43.38 3.20
3798 4194 4.034048 GCACCAGCACTATGTGTATGTAAC 59.966 45.833 0.00 0.00 41.58 2.50
3969 4379 7.759465 TGTTACAAAAATTTAGTTGACCGTGA 58.241 30.769 9.13 0.00 0.00 4.35
3970 4380 7.972623 TGTTACAAAAATTTAGTTGACCGTG 57.027 32.000 9.13 0.00 0.00 4.94
3983 4416 8.474025 TGGAAACACTGATCTTGTTACAAAAAT 58.526 29.630 12.06 0.00 36.13 1.82
4068 4628 7.534085 TGTATGAGATTCAACAACGGTAATC 57.466 36.000 0.00 0.00 0.00 1.75
4180 4742 8.678510 CAACGTACAAAACTGAATTATGTCAAC 58.321 33.333 0.00 0.00 0.00 3.18
4188 4750 6.848451 ACAGAACAACGTACAAAACTGAATT 58.152 32.000 0.00 0.00 0.00 2.17
4706 5285 6.767524 TGTCAATTATCCACAATTGTACCC 57.232 37.500 11.53 0.00 43.40 3.69
4737 5316 6.855763 TTGATTGTGCATCCTTTAATTCCT 57.144 33.333 0.00 0.00 0.00 3.36
4761 5340 6.360370 ACTAACTGCAACTCCTATTCAGAA 57.640 37.500 0.00 0.00 0.00 3.02
4763 5342 7.101652 TCTACTAACTGCAACTCCTATTCAG 57.898 40.000 0.00 0.00 0.00 3.02
4770 5349 8.549338 AAACTATTTCTACTAACTGCAACTCC 57.451 34.615 0.00 0.00 0.00 3.85
4936 5521 7.777095 TGTAGTTTGTAATTTTGGTTGCTTCT 58.223 30.769 0.00 0.00 0.00 2.85
4963 5551 2.373224 GCTAGCTCAAGCCCAAAATCT 58.627 47.619 7.70 0.00 43.38 2.40
4992 5580 6.604735 AAACCATGAGTTCATTATACGCTC 57.395 37.500 0.00 0.00 37.88 5.03
5065 5658 1.002069 TCGTCCTTACCCACCCTAGA 58.998 55.000 0.00 0.00 0.00 2.43
5449 6426 7.444299 TGAATGCCAAAGCTAAAGAAGATTTT 58.556 30.769 0.00 0.00 40.92 1.82
5459 6436 4.022068 CCAAGACTTGAATGCCAAAGCTAA 60.022 41.667 16.99 0.00 40.80 3.09
5941 6918 2.917971 CCAAAACGACGCACAAGAAAAA 59.082 40.909 0.00 0.00 0.00 1.94
5942 6919 2.520979 CCAAAACGACGCACAAGAAAA 58.479 42.857 0.00 0.00 0.00 2.29
6150 7127 4.997565 GCAGCTGCAAATAGGAAACATTA 58.002 39.130 33.36 0.00 41.59 1.90
6210 7187 4.822350 TCTTAGATCGTCGACATGGATTCT 59.178 41.667 17.16 9.68 0.00 2.40
6236 7213 0.318699 GCTGGGTTTCGGAAACTTGC 60.319 55.000 27.25 23.32 41.14 4.01
6361 7340 6.491394 GTGCAAACAAAGTGTCATTAGTACA 58.509 36.000 0.00 0.00 0.00 2.90
6471 7454 7.992754 AATGTCTGTTCTAAAGCTTCTTCAT 57.007 32.000 0.00 0.00 0.00 2.57
6693 7676 0.664466 TTGACGCGTGAAGAGCTCTG 60.664 55.000 20.70 5.63 0.00 3.35
6702 7685 4.304110 AGAAATTACTCTTTGACGCGTGA 58.696 39.130 20.70 4.74 0.00 4.35
6742 7725 6.108687 TGAAGATGCCATCAGTAACTAGTTG 58.891 40.000 18.56 2.32 0.00 3.16
6754 7737 2.289002 GGTCGATGTTGAAGATGCCATC 59.711 50.000 0.00 0.00 0.00 3.51
6770 7753 2.874664 CGGGTGGTTTGAGGGTCGA 61.875 63.158 0.00 0.00 0.00 4.20
6813 7796 2.094234 GCGTTGGATGGCAAAATACCTT 60.094 45.455 0.00 0.00 0.00 3.50
6931 7914 1.411074 GCCATAGGGGTTTTAGGTGGG 60.411 57.143 0.00 0.00 39.65 4.61
6935 7918 0.930726 TGGGCCATAGGGGTTTTAGG 59.069 55.000 0.00 0.00 39.65 2.69
6945 7928 1.411074 GGGGTTTTAGGTGGGCCATAG 60.411 57.143 10.70 0.00 37.19 2.23
6946 7929 0.632294 GGGGTTTTAGGTGGGCCATA 59.368 55.000 10.70 0.00 37.19 2.74
6947 7930 1.153041 AGGGGTTTTAGGTGGGCCAT 61.153 55.000 10.70 0.00 37.19 4.40
6948 7931 1.780911 AGGGGTTTTAGGTGGGCCA 60.781 57.895 0.00 0.00 37.19 5.36
6949 7932 1.000019 GAGGGGTTTTAGGTGGGCC 60.000 63.158 0.00 0.00 0.00 5.80
6950 7933 1.000019 GGAGGGGTTTTAGGTGGGC 60.000 63.158 0.00 0.00 0.00 5.36
6951 7934 1.695465 GGGAGGGGTTTTAGGTGGG 59.305 63.158 0.00 0.00 0.00 4.61
6952 7935 1.301954 CGGGAGGGGTTTTAGGTGG 59.698 63.158 0.00 0.00 0.00 4.61
6953 7936 1.378119 GCGGGAGGGGTTTTAGGTG 60.378 63.158 0.00 0.00 0.00 4.00
6954 7937 1.848895 TGCGGGAGGGGTTTTAGGT 60.849 57.895 0.00 0.00 0.00 3.08
6955 7938 1.378119 GTGCGGGAGGGGTTTTAGG 60.378 63.158 0.00 0.00 0.00 2.69
6956 7939 0.250989 TTGTGCGGGAGGGGTTTTAG 60.251 55.000 0.00 0.00 0.00 1.85
6957 7940 0.250989 CTTGTGCGGGAGGGGTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
6958 7941 1.530655 CTTGTGCGGGAGGGGTTTT 60.531 57.895 0.00 0.00 0.00 2.43
6959 7942 2.115266 CTTGTGCGGGAGGGGTTT 59.885 61.111 0.00 0.00 0.00 3.27
6960 7943 3.966543 CCTTGTGCGGGAGGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
7007 7990 0.747644 TATGGGCTGGCATGAACGTG 60.748 55.000 2.88 0.00 0.00 4.49
7008 7991 0.464373 CTATGGGCTGGCATGAACGT 60.464 55.000 2.88 0.00 0.00 3.99
7010 7993 1.789078 CGCTATGGGCTGGCATGAAC 61.789 60.000 2.88 0.00 39.13 3.18
7019 8021 1.521681 GTCGCTTTCGCTATGGGCT 60.522 57.895 0.00 0.00 39.13 5.19
7047 8049 0.038892 CTTGCCACTTCAATGCGCTT 60.039 50.000 9.73 0.00 0.00 4.68
7064 8068 4.301637 GTGAACACGGGTGATTTTTCTT 57.698 40.909 5.71 0.00 0.00 2.52
7065 8069 3.982576 GTGAACACGGGTGATTTTTCT 57.017 42.857 5.71 0.00 0.00 2.52
7078 8082 1.356527 GGATGGGCGTACGTGAACAC 61.357 60.000 17.90 1.09 0.00 3.32
7079 8083 1.079681 GGATGGGCGTACGTGAACA 60.080 57.895 17.90 10.99 0.00 3.18
7080 8084 0.390735 AAGGATGGGCGTACGTGAAC 60.391 55.000 17.90 5.48 0.00 3.18
7081 8085 0.322322 AAAGGATGGGCGTACGTGAA 59.678 50.000 17.90 2.65 0.00 3.18
7082 8086 0.108520 GAAAGGATGGGCGTACGTGA 60.109 55.000 17.90 1.08 0.00 4.35
7083 8087 1.087771 GGAAAGGATGGGCGTACGTG 61.088 60.000 17.90 0.00 0.00 4.49
7084 8088 1.219935 GGAAAGGATGGGCGTACGT 59.780 57.895 17.90 0.00 0.00 3.57
7085 8089 1.523032 GGGAAAGGATGGGCGTACG 60.523 63.158 11.84 11.84 0.00 3.67
7086 8090 0.034863 TTGGGAAAGGATGGGCGTAC 60.035 55.000 0.00 0.00 0.00 3.67
7087 8091 0.034863 GTTGGGAAAGGATGGGCGTA 60.035 55.000 0.00 0.00 0.00 4.42
7088 8092 1.304134 GTTGGGAAAGGATGGGCGT 60.304 57.895 0.00 0.00 0.00 5.68
7089 8093 2.406616 CGTTGGGAAAGGATGGGCG 61.407 63.158 0.00 0.00 0.00 6.13
7090 8094 0.898326 AACGTTGGGAAAGGATGGGC 60.898 55.000 0.00 0.00 0.00 5.36
7091 8095 0.887933 CAACGTTGGGAAAGGATGGG 59.112 55.000 20.71 0.00 0.00 4.00
7092 8096 0.243636 GCAACGTTGGGAAAGGATGG 59.756 55.000 28.33 0.00 0.00 3.51
7093 8097 0.243636 GGCAACGTTGGGAAAGGATG 59.756 55.000 28.33 1.05 0.00 3.51
7094 8098 0.112412 AGGCAACGTTGGGAAAGGAT 59.888 50.000 28.33 0.00 46.39 3.24
7095 8099 0.536460 GAGGCAACGTTGGGAAAGGA 60.536 55.000 28.33 0.00 46.39 3.36
7096 8100 1.852067 CGAGGCAACGTTGGGAAAGG 61.852 60.000 28.33 2.69 46.39 3.11
7097 8101 1.574428 CGAGGCAACGTTGGGAAAG 59.426 57.895 28.33 3.46 46.39 2.62
7098 8102 1.894756 CCGAGGCAACGTTGGGAAA 60.895 57.895 28.33 0.00 46.39 3.13
7099 8103 2.119484 ATCCGAGGCAACGTTGGGAA 62.119 55.000 28.33 11.74 46.39 3.97
7100 8104 2.589157 ATCCGAGGCAACGTTGGGA 61.589 57.895 28.33 24.46 46.39 4.37
7101 8105 2.046314 ATCCGAGGCAACGTTGGG 60.046 61.111 28.33 20.37 46.39 4.12
7102 8106 1.635663 GACATCCGAGGCAACGTTGG 61.636 60.000 28.33 12.59 46.39 3.77
7103 8107 1.635663 GGACATCCGAGGCAACGTTG 61.636 60.000 23.90 23.90 46.39 4.10
7104 8108 1.375523 GGACATCCGAGGCAACGTT 60.376 57.895 0.00 0.00 46.39 3.99
7105 8109 2.264794 GGACATCCGAGGCAACGT 59.735 61.111 3.78 0.00 46.39 3.99
7106 8110 2.511600 GGGACATCCGAGGCAACG 60.512 66.667 0.00 0.00 38.40 4.10
7115 8119 0.878961 GGCATAACGACGGGACATCC 60.879 60.000 0.00 0.00 0.00 3.51
7116 8120 0.179094 TGGCATAACGACGGGACATC 60.179 55.000 0.00 0.00 0.00 3.06
7117 8121 0.468226 ATGGCATAACGACGGGACAT 59.532 50.000 0.00 0.00 0.00 3.06
7118 8122 0.179094 GATGGCATAACGACGGGACA 60.179 55.000 0.00 0.00 0.00 4.02
7119 8123 0.179094 TGATGGCATAACGACGGGAC 60.179 55.000 0.00 0.00 0.00 4.46
7120 8124 0.179094 GTGATGGCATAACGACGGGA 60.179 55.000 0.00 0.00 0.00 5.14
7121 8125 1.487452 CGTGATGGCATAACGACGGG 61.487 60.000 29.43 2.00 39.64 5.28
7122 8126 0.526739 TCGTGATGGCATAACGACGG 60.527 55.000 31.20 8.43 41.08 4.79
7123 8127 1.255342 CTTCGTGATGGCATAACGACG 59.745 52.381 33.88 28.79 45.20 5.12
7124 8128 1.593006 CCTTCGTGATGGCATAACGAC 59.407 52.381 33.88 12.74 45.20 4.34
7125 8129 1.206132 ACCTTCGTGATGGCATAACGA 59.794 47.619 31.20 31.20 43.98 3.85
7126 8130 1.327460 CACCTTCGTGATGGCATAACG 59.673 52.381 27.82 27.82 43.14 3.18
7127 8131 2.356135 ACACCTTCGTGATGGCATAAC 58.644 47.619 4.76 4.76 43.14 1.89
7128 8132 2.746904 CAACACCTTCGTGATGGCATAA 59.253 45.455 0.00 0.00 43.14 1.90
7129 8133 2.355197 CAACACCTTCGTGATGGCATA 58.645 47.619 0.00 0.00 43.14 3.14
7130 8134 1.167851 CAACACCTTCGTGATGGCAT 58.832 50.000 0.00 0.00 43.14 4.40
7131 8135 2.627791 CAACACCTTCGTGATGGCA 58.372 52.632 0.00 0.00 43.14 4.92
7134 8138 1.586154 GGGCCAACACCTTCGTGATG 61.586 60.000 4.39 0.00 43.14 3.07
7135 8139 1.303317 GGGCCAACACCTTCGTGAT 60.303 57.895 4.39 0.00 43.14 3.06
7136 8140 2.112297 GGGCCAACACCTTCGTGA 59.888 61.111 4.39 0.00 43.14 4.35
7137 8141 3.353836 CGGGCCAACACCTTCGTG 61.354 66.667 4.39 0.00 46.11 4.35
7138 8142 4.636435 CCGGGCCAACACCTTCGT 62.636 66.667 4.39 0.00 0.00 3.85
7139 8143 4.636435 ACCGGGCCAACACCTTCG 62.636 66.667 6.32 0.00 0.00 3.79
7140 8144 2.671963 GACCGGGCCAACACCTTC 60.672 66.667 6.32 0.00 0.00 3.46
7141 8145 4.280019 GGACCGGGCCAACACCTT 62.280 66.667 25.88 0.00 0.00 3.50
7152 8156 3.044059 GAGACGTACACGGGACCGG 62.044 68.421 15.92 0.00 44.95 5.28
7153 8157 2.482374 GAGACGTACACGGGACCG 59.518 66.667 9.56 9.56 44.95 4.79
7154 8158 2.328099 ACGAGACGTACACGGGACC 61.328 63.158 6.72 0.00 44.95 4.46
7155 8159 1.154338 CACGAGACGTACACGGGAC 60.154 63.158 6.72 0.00 44.95 4.46
7156 8160 1.293963 CTCACGAGACGTACACGGGA 61.294 60.000 11.65 11.65 42.05 5.14
7157 8161 1.134075 CTCACGAGACGTACACGGG 59.866 63.158 6.72 8.48 44.95 5.28
7158 8162 0.514255 TTCTCACGAGACGTACACGG 59.486 55.000 6.72 3.33 44.95 4.94
7159 8163 2.305252 TTTCTCACGAGACGTACACG 57.695 50.000 0.00 0.00 38.32 4.49
7160 8164 4.321217 CAGAATTTCTCACGAGACGTACAC 59.679 45.833 0.00 0.00 38.32 2.90
7161 8165 4.214758 TCAGAATTTCTCACGAGACGTACA 59.785 41.667 0.00 0.00 38.32 2.90
7162 8166 4.554200 GTCAGAATTTCTCACGAGACGTAC 59.446 45.833 0.00 0.00 38.32 3.67
7163 8167 4.379186 GGTCAGAATTTCTCACGAGACGTA 60.379 45.833 0.00 0.00 38.32 3.57
7164 8168 3.566523 GTCAGAATTTCTCACGAGACGT 58.433 45.455 0.00 0.00 42.36 4.34
7165 8169 2.917971 GGTCAGAATTTCTCACGAGACG 59.082 50.000 0.00 0.00 37.14 4.18
7166 8170 3.254892 GGGTCAGAATTTCTCACGAGAC 58.745 50.000 0.00 1.05 37.14 3.36
7167 8171 2.897326 TGGGTCAGAATTTCTCACGAGA 59.103 45.455 0.00 0.00 35.27 4.04
7168 8172 3.319137 TGGGTCAGAATTTCTCACGAG 57.681 47.619 0.00 0.00 0.00 4.18
7169 8173 3.181459 TGTTGGGTCAGAATTTCTCACGA 60.181 43.478 0.00 0.00 0.00 4.35
7170 8174 3.138304 TGTTGGGTCAGAATTTCTCACG 58.862 45.455 0.00 0.00 0.00 4.35
7171 8175 3.057946 GCTGTTGGGTCAGAATTTCTCAC 60.058 47.826 0.00 0.00 37.61 3.51
7172 8176 3.149196 GCTGTTGGGTCAGAATTTCTCA 58.851 45.455 0.00 0.00 37.61 3.27
7173 8177 2.489722 GGCTGTTGGGTCAGAATTTCTC 59.510 50.000 0.00 0.00 37.61 2.87
7174 8178 2.519013 GGCTGTTGGGTCAGAATTTCT 58.481 47.619 0.00 0.00 37.61 2.52
7175 8179 1.200020 CGGCTGTTGGGTCAGAATTTC 59.800 52.381 0.00 0.00 37.61 2.17
7176 8180 1.202879 TCGGCTGTTGGGTCAGAATTT 60.203 47.619 0.00 0.00 37.61 1.82
7177 8181 0.400213 TCGGCTGTTGGGTCAGAATT 59.600 50.000 0.00 0.00 37.61 2.17
7178 8182 0.400213 TTCGGCTGTTGGGTCAGAAT 59.600 50.000 0.00 0.00 37.61 2.40
7179 8183 0.250295 CTTCGGCTGTTGGGTCAGAA 60.250 55.000 0.00 0.00 37.61 3.02
7180 8184 1.371183 CTTCGGCTGTTGGGTCAGA 59.629 57.895 0.00 0.00 37.61 3.27
7181 8185 1.672356 CCTTCGGCTGTTGGGTCAG 60.672 63.158 0.00 0.00 38.35 3.51
7182 8186 2.429930 CCTTCGGCTGTTGGGTCA 59.570 61.111 0.00 0.00 0.00 4.02
7183 8187 1.966451 CACCTTCGGCTGTTGGGTC 60.966 63.158 10.40 0.00 0.00 4.46
7184 8188 2.113139 CACCTTCGGCTGTTGGGT 59.887 61.111 10.40 6.34 0.00 4.51
7185 8189 2.672996 CCACCTTCGGCTGTTGGG 60.673 66.667 10.40 5.80 0.00 4.12
7193 8197 2.592993 TTCCCTGAGCCACCTTCGG 61.593 63.158 0.00 0.00 0.00 4.30
7194 8198 1.376037 GTTCCCTGAGCCACCTTCG 60.376 63.158 0.00 0.00 0.00 3.79
7195 8199 0.322008 CTGTTCCCTGAGCCACCTTC 60.322 60.000 0.00 0.00 0.00 3.46
7196 8200 1.763770 CTGTTCCCTGAGCCACCTT 59.236 57.895 0.00 0.00 0.00 3.50
7197 8201 2.227036 CCTGTTCCCTGAGCCACCT 61.227 63.158 0.00 0.00 0.00 4.00
7198 8202 1.779061 TTCCTGTTCCCTGAGCCACC 61.779 60.000 0.00 0.00 0.00 4.61
7199 8203 0.110486 TTTCCTGTTCCCTGAGCCAC 59.890 55.000 0.00 0.00 0.00 5.01
7200 8204 0.401738 CTTTCCTGTTCCCTGAGCCA 59.598 55.000 0.00 0.00 0.00 4.75
7201 8205 0.402121 ACTTTCCTGTTCCCTGAGCC 59.598 55.000 0.00 0.00 0.00 4.70
7202 8206 2.615747 GGTACTTTCCTGTTCCCTGAGC 60.616 54.545 0.00 0.00 0.00 4.26
7203 8207 2.027100 GGGTACTTTCCTGTTCCCTGAG 60.027 54.545 0.00 0.00 42.19 3.35
7204 8208 1.982958 GGGTACTTTCCTGTTCCCTGA 59.017 52.381 0.00 0.00 42.19 3.86
7205 8209 1.004394 GGGGTACTTTCCTGTTCCCTG 59.996 57.143 8.77 0.00 44.08 4.45
7206 8210 1.369403 GGGGTACTTTCCTGTTCCCT 58.631 55.000 8.77 0.00 44.08 4.20
7207 8211 0.035725 CGGGGTACTTTCCTGTTCCC 60.036 60.000 0.00 0.00 43.96 3.97
7208 8212 0.689055 ACGGGGTACTTTCCTGTTCC 59.311 55.000 0.00 0.00 40.76 3.62
7211 8215 0.250597 GCAACGGGGTACTTTCCTGT 60.251 55.000 0.00 0.00 45.14 4.00
7212 8216 1.296056 CGCAACGGGGTACTTTCCTG 61.296 60.000 0.00 0.00 36.74 3.86
7213 8217 1.004200 CGCAACGGGGTACTTTCCT 60.004 57.895 0.00 0.00 0.00 3.36
7214 8218 0.037419 TACGCAACGGGGTACTTTCC 60.037 55.000 0.00 0.00 41.00 3.13
7215 8219 3.512978 TACGCAACGGGGTACTTTC 57.487 52.632 0.00 0.00 41.00 2.62
7220 8224 0.825410 ATCATGTACGCAACGGGGTA 59.175 50.000 0.00 0.00 41.00 3.69
7221 8225 0.461339 GATCATGTACGCAACGGGGT 60.461 55.000 0.00 0.00 43.37 4.95
7222 8226 1.157870 GGATCATGTACGCAACGGGG 61.158 60.000 0.00 0.00 0.00 5.73
7223 8227 1.487452 CGGATCATGTACGCAACGGG 61.487 60.000 0.00 0.00 0.00 5.28
7224 8228 0.526739 TCGGATCATGTACGCAACGG 60.527 55.000 0.00 0.00 32.84 4.44
7225 8229 0.570734 GTCGGATCATGTACGCAACG 59.429 55.000 0.00 0.00 32.84 4.10
7226 8230 0.928229 GGTCGGATCATGTACGCAAC 59.072 55.000 0.00 0.00 32.84 4.17
7227 8231 0.526739 CGGTCGGATCATGTACGCAA 60.527 55.000 0.00 0.00 32.84 4.85
7228 8232 1.065109 CGGTCGGATCATGTACGCA 59.935 57.895 0.00 0.00 32.84 5.24
7229 8233 0.933509 GTCGGTCGGATCATGTACGC 60.934 60.000 0.00 0.00 32.84 4.42
7230 8234 0.656495 CGTCGGTCGGATCATGTACG 60.656 60.000 0.00 0.00 35.71 3.67
7231 8235 3.159446 CGTCGGTCGGATCATGTAC 57.841 57.895 0.00 0.00 35.71 2.90
7241 8245 2.716988 GACTGTTTACCGTCGGTCG 58.283 57.895 22.74 8.01 37.09 4.79
7242 8246 2.716988 CGACTGTTTACCGTCGGTC 58.283 57.895 22.74 7.48 46.61 4.79
7243 8247 4.950744 CGACTGTTTACCGTCGGT 57.049 55.556 22.66 22.66 46.61 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.