Multiple sequence alignment - TraesCS1A01G415200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G415200 chr1A 100.000 6383 0 0 1 6383 574341762 574335380 0.000000e+00 11788
1 TraesCS1A01G415200 chr1D 92.707 5361 202 76 317 5640 478126222 478121014 0.000000e+00 7559
2 TraesCS1A01G415200 chr1D 83.212 548 64 14 5855 6383 478121016 478120478 1.610000e-130 477
3 TraesCS1A01G415200 chr1B 91.711 5453 255 95 235 5639 665315150 665309847 0.000000e+00 7384
4 TraesCS1A01G415200 chr1B 88.119 404 22 9 6004 6383 665309752 665309351 2.100000e-124 457
5 TraesCS1A01G415200 chr1B 95.536 224 10 0 5637 5860 37692475 37692698 6.080000e-95 359
6 TraesCS1A01G415200 chr1B 90.000 110 11 0 5848 5957 665309859 665309750 6.670000e-30 143
7 TraesCS1A01G415200 chr5A 96.429 224 6 2 5628 5850 547622384 547622606 1.010000e-97 368
8 TraesCS1A01G415200 chr5A 95.067 223 8 3 1 221 689198836 689198615 1.320000e-91 348
9 TraesCS1A01G415200 chr3B 96.413 223 8 0 5637 5859 52194268 52194046 1.010000e-97 368
10 TraesCS1A01G415200 chr3B 95.000 220 11 0 5638 5857 42062135 42061916 4.740000e-91 346
11 TraesCS1A01G415200 chr6B 96.347 219 8 0 5638 5856 468287468 468287250 1.690000e-95 361
12 TraesCS1A01G415200 chr4B 96.347 219 8 0 5638 5856 139529427 139529209 1.690000e-95 361
13 TraesCS1A01G415200 chr5B 95.536 224 9 1 5633 5856 411089020 411089242 2.190000e-94 357
14 TraesCS1A01G415200 chr5B 95.133 226 10 1 5638 5863 184283966 184284190 7.870000e-94 355
15 TraesCS1A01G415200 chr7A 93.617 235 13 2 5623 5856 23304471 23304704 3.660000e-92 350
16 TraesCS1A01G415200 chr7A 87.111 225 24 5 1 221 681664505 681664728 3.820000e-62 250
17 TraesCS1A01G415200 chr7A 85.526 228 26 6 1 221 4695216 4694989 1.380000e-56 231
18 TraesCS1A01G415200 chr3A 89.333 225 20 4 1 221 222034360 222034136 4.870000e-71 279
19 TraesCS1A01G415200 chr3A 86.574 216 24 5 10 221 744685943 744685729 3.850000e-57 233
20 TraesCS1A01G415200 chr2A 88.889 225 21 3 1 221 1564600 1564824 2.270000e-69 274
21 TraesCS1A01G415200 chr7D 89.573 211 19 2 1 208 3870660 3870450 1.360000e-66 265
22 TraesCS1A01G415200 chr4A 84.188 234 23 11 1 221 478578217 478577985 1.390000e-51 215
23 TraesCS1A01G415200 chr4D 83.761 234 24 9 1 221 468013482 468013250 6.480000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G415200 chr1A 574335380 574341762 6382 True 11788.000000 11788 100.000000 1 6383 1 chr1A.!!$R1 6382
1 TraesCS1A01G415200 chr1D 478120478 478126222 5744 True 4018.000000 7559 87.959500 317 6383 2 chr1D.!!$R1 6066
2 TraesCS1A01G415200 chr1B 665309351 665315150 5799 True 2661.333333 7384 89.943333 235 6383 3 chr1B.!!$R1 6148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.035725 TTCAGATGCAGAGCCTGGTG 60.036 55.000 0.00 0.0 31.21 4.17 F
548 563 0.108898 GTGCACAGCAAACAACACCA 60.109 50.000 13.17 0.0 41.47 4.17 F
764 785 0.739112 CGAGCCTGTCTTTCCTGAGC 60.739 60.000 0.00 0.0 0.00 4.26 F
1154 1191 0.813210 GCTCAAGCTTATGCCTCGCT 60.813 55.000 0.00 0.0 40.80 4.93 F
1242 1279 1.227764 CATCCCCTGCCGATGACTG 60.228 63.158 0.00 0.0 39.64 3.51 F
2197 2237 1.476833 GGTCCAAGTTTCTGTGGCAGA 60.477 52.381 0.00 0.0 38.87 4.26 F
3039 3118 0.878523 TTGACAGTGTTTCCTCCGCG 60.879 55.000 0.00 0.0 0.00 6.46 F
4229 4309 0.673644 ATTTGTTGAGTCCCTCGCGG 60.674 55.000 6.13 0.0 32.35 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1279 0.030638 TCTTTGCTTTGAACTGCGCC 59.969 50.000 4.18 0.0 0.00 6.53 R
1364 1401 0.108041 GACGGGGCCGAGTTGATTAA 60.108 55.000 0.00 0.0 42.83 1.40 R
1753 1790 1.448717 GTCGAGCTCCTTCTTGGCC 60.449 63.158 8.47 0.0 35.26 5.36 R
2317 2357 4.225042 AGTGCATGTCATTAGGTTCCTACA 59.775 41.667 0.00 0.0 0.00 2.74 R
2323 2363 4.833478 AGAGAGTGCATGTCATTAGGTT 57.167 40.909 0.00 0.0 0.00 3.50 R
3480 3559 1.227527 GCCACCACCAAACCTTTGC 60.228 57.895 0.00 0.0 36.86 3.68 R
4754 4836 0.035881 CTGCTCCACTCTGCCAGAAA 59.964 55.000 0.00 0.0 0.00 2.52 R
5972 6062 0.109723 TAAGCATTACCCGCCCATCC 59.890 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.516448 TGGAAGATGGTAGCTCGGG 58.484 57.895 0.00 0.00 0.00 5.14
19 20 1.069935 GGAAGATGGTAGCTCGGGC 59.930 63.158 0.00 0.00 39.06 6.13
31 32 1.429463 GCTCGGGCTATATTCAACCG 58.571 55.000 0.00 0.00 45.52 4.44
32 33 1.939838 GCTCGGGCTATATTCAACCGG 60.940 57.143 0.00 0.00 44.36 5.28
33 34 1.343465 CTCGGGCTATATTCAACCGGT 59.657 52.381 0.00 0.00 44.36 5.28
34 35 1.764134 TCGGGCTATATTCAACCGGTT 59.236 47.619 15.86 15.86 44.36 4.44
35 36 2.171027 TCGGGCTATATTCAACCGGTTT 59.829 45.455 19.55 6.11 44.36 3.27
36 37 2.289547 CGGGCTATATTCAACCGGTTTG 59.710 50.000 19.55 13.53 40.79 2.93
37 38 2.621526 GGGCTATATTCAACCGGTTTGG 59.378 50.000 19.55 7.84 46.41 3.28
38 39 3.547746 GGCTATATTCAACCGGTTTGGA 58.452 45.455 19.55 10.51 42.00 3.53
39 40 4.142038 GGCTATATTCAACCGGTTTGGAT 58.858 43.478 19.55 15.43 42.00 3.41
40 41 4.023193 GGCTATATTCAACCGGTTTGGATG 60.023 45.833 19.55 7.05 41.73 3.51
41 42 4.023193 GCTATATTCAACCGGTTTGGATGG 60.023 45.833 19.55 11.58 40.78 3.51
42 43 0.894835 ATTCAACCGGTTTGGATGGC 59.105 50.000 19.55 0.00 40.78 4.40
43 44 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
44 45 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
45 46 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
46 47 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
47 48 3.496131 CGGTTTGGATGGCGGTCG 61.496 66.667 0.00 0.00 0.00 4.79
48 49 3.810896 GGTTTGGATGGCGGTCGC 61.811 66.667 6.83 6.83 41.06 5.19
49 50 2.746277 GTTTGGATGGCGGTCGCT 60.746 61.111 15.04 0.00 41.60 4.93
50 51 2.033448 TTTGGATGGCGGTCGCTT 59.967 55.556 15.04 3.37 41.60 4.68
51 52 1.022451 GTTTGGATGGCGGTCGCTTA 61.022 55.000 15.04 5.43 41.60 3.09
52 53 0.321741 TTTGGATGGCGGTCGCTTAA 60.322 50.000 15.04 2.24 41.60 1.85
53 54 1.022451 TTGGATGGCGGTCGCTTAAC 61.022 55.000 15.04 4.82 41.60 2.01
54 55 1.448893 GGATGGCGGTCGCTTAACA 60.449 57.895 15.04 5.01 41.60 2.41
55 56 1.022451 GGATGGCGGTCGCTTAACAA 61.022 55.000 15.04 0.00 41.60 2.83
56 57 0.800012 GATGGCGGTCGCTTAACAAA 59.200 50.000 15.04 0.00 41.60 2.83
57 58 1.198178 GATGGCGGTCGCTTAACAAAA 59.802 47.619 15.04 0.00 41.60 2.44
58 59 1.240256 TGGCGGTCGCTTAACAAAAT 58.760 45.000 15.04 0.00 41.60 1.82
59 60 2.424557 TGGCGGTCGCTTAACAAAATA 58.575 42.857 15.04 0.00 41.60 1.40
60 61 2.417239 TGGCGGTCGCTTAACAAAATAG 59.583 45.455 15.04 0.00 41.60 1.73
61 62 2.223180 GGCGGTCGCTTAACAAAATAGG 60.223 50.000 15.04 0.00 41.60 2.57
62 63 2.674357 GCGGTCGCTTAACAAAATAGGA 59.326 45.455 8.20 0.00 38.26 2.94
63 64 3.125658 GCGGTCGCTTAACAAAATAGGAA 59.874 43.478 8.20 0.00 38.26 3.36
64 65 4.201881 GCGGTCGCTTAACAAAATAGGAAT 60.202 41.667 8.20 0.00 38.26 3.01
65 66 5.499047 CGGTCGCTTAACAAAATAGGAATC 58.501 41.667 0.00 0.00 0.00 2.52
66 67 5.293569 CGGTCGCTTAACAAAATAGGAATCT 59.706 40.000 0.00 0.00 0.00 2.40
67 68 6.477688 CGGTCGCTTAACAAAATAGGAATCTA 59.522 38.462 0.00 0.00 0.00 1.98
68 69 7.306632 CGGTCGCTTAACAAAATAGGAATCTAG 60.307 40.741 0.00 0.00 0.00 2.43
69 70 7.494952 GGTCGCTTAACAAAATAGGAATCTAGT 59.505 37.037 0.00 0.00 0.00 2.57
70 71 8.880750 GTCGCTTAACAAAATAGGAATCTAGTT 58.119 33.333 0.00 0.00 35.57 2.24
71 72 9.095065 TCGCTTAACAAAATAGGAATCTAGTTC 57.905 33.333 0.00 0.00 33.28 3.01
72 73 9.099454 CGCTTAACAAAATAGGAATCTAGTTCT 57.901 33.333 0.00 0.00 33.28 3.01
78 79 9.495382 ACAAAATAGGAATCTAGTTCTAGTCCT 57.505 33.333 17.29 17.29 38.93 3.85
85 86 9.945633 AGGAATCTAGTTCTAGTCCTTTATCTT 57.054 33.333 11.06 0.00 37.01 2.40
88 89 9.716556 AATCTAGTTCTAGTCCTTTATCTTCCA 57.283 33.333 6.73 0.00 0.00 3.53
89 90 8.522542 TCTAGTTCTAGTCCTTTATCTTCCAC 57.477 38.462 6.73 0.00 0.00 4.02
90 91 6.547930 AGTTCTAGTCCTTTATCTTCCACC 57.452 41.667 0.00 0.00 0.00 4.61
91 92 5.127356 AGTTCTAGTCCTTTATCTTCCACCG 59.873 44.000 0.00 0.00 0.00 4.94
92 93 3.958798 TCTAGTCCTTTATCTTCCACCGG 59.041 47.826 0.00 0.00 0.00 5.28
93 94 2.547990 AGTCCTTTATCTTCCACCGGT 58.452 47.619 0.00 0.00 0.00 5.28
94 95 2.910977 AGTCCTTTATCTTCCACCGGTT 59.089 45.455 2.97 0.00 0.00 4.44
95 96 3.007635 GTCCTTTATCTTCCACCGGTTG 58.992 50.000 2.97 0.00 0.00 3.77
96 97 2.640826 TCCTTTATCTTCCACCGGTTGT 59.359 45.455 2.97 0.00 0.00 3.32
97 98 3.839490 TCCTTTATCTTCCACCGGTTGTA 59.161 43.478 2.97 0.00 0.00 2.41
98 99 4.286549 TCCTTTATCTTCCACCGGTTGTAA 59.713 41.667 2.97 0.00 0.00 2.41
99 100 5.045432 TCCTTTATCTTCCACCGGTTGTAAT 60.045 40.000 2.97 0.00 0.00 1.89
100 101 5.650703 CCTTTATCTTCCACCGGTTGTAATT 59.349 40.000 2.97 0.00 0.00 1.40
101 102 6.152154 CCTTTATCTTCCACCGGTTGTAATTT 59.848 38.462 2.97 0.00 0.00 1.82
102 103 7.309560 CCTTTATCTTCCACCGGTTGTAATTTT 60.310 37.037 2.97 0.00 0.00 1.82
103 104 4.839668 TCTTCCACCGGTTGTAATTTTG 57.160 40.909 2.97 0.00 0.00 2.44
104 105 4.462133 TCTTCCACCGGTTGTAATTTTGA 58.538 39.130 2.97 0.00 0.00 2.69
105 106 4.517453 TCTTCCACCGGTTGTAATTTTGAG 59.483 41.667 2.97 0.00 0.00 3.02
106 107 2.554893 TCCACCGGTTGTAATTTTGAGC 59.445 45.455 2.97 0.00 0.00 4.26
107 108 2.556622 CCACCGGTTGTAATTTTGAGCT 59.443 45.455 2.97 0.00 0.00 4.09
108 109 3.365969 CCACCGGTTGTAATTTTGAGCTC 60.366 47.826 2.97 6.82 0.00 4.09
109 110 2.817844 ACCGGTTGTAATTTTGAGCTCC 59.182 45.455 12.15 0.00 0.00 4.70
110 111 3.081804 CCGGTTGTAATTTTGAGCTCCT 58.918 45.455 12.15 0.00 0.00 3.69
111 112 3.506067 CCGGTTGTAATTTTGAGCTCCTT 59.494 43.478 12.15 2.36 0.00 3.36
112 113 4.022329 CCGGTTGTAATTTTGAGCTCCTTT 60.022 41.667 12.15 2.18 0.00 3.11
113 114 5.508994 CCGGTTGTAATTTTGAGCTCCTTTT 60.509 40.000 12.15 2.54 0.00 2.27
114 115 5.402270 CGGTTGTAATTTTGAGCTCCTTTTG 59.598 40.000 12.15 0.00 0.00 2.44
115 116 6.280643 GGTTGTAATTTTGAGCTCCTTTTGT 58.719 36.000 12.15 0.00 0.00 2.83
116 117 6.420903 GGTTGTAATTTTGAGCTCCTTTTGTC 59.579 38.462 12.15 0.00 0.00 3.18
117 118 6.959639 TGTAATTTTGAGCTCCTTTTGTCT 57.040 33.333 12.15 0.00 0.00 3.41
118 119 7.346751 TGTAATTTTGAGCTCCTTTTGTCTT 57.653 32.000 12.15 0.00 0.00 3.01
119 120 7.202526 TGTAATTTTGAGCTCCTTTTGTCTTG 58.797 34.615 12.15 0.00 0.00 3.02
120 121 6.469782 AATTTTGAGCTCCTTTTGTCTTGA 57.530 33.333 12.15 0.00 0.00 3.02
121 122 6.661304 ATTTTGAGCTCCTTTTGTCTTGAT 57.339 33.333 12.15 0.00 0.00 2.57
122 123 5.443185 TTTGAGCTCCTTTTGTCTTGATG 57.557 39.130 12.15 0.00 0.00 3.07
123 124 2.816087 TGAGCTCCTTTTGTCTTGATGC 59.184 45.455 12.15 0.00 0.00 3.91
124 125 3.080319 GAGCTCCTTTTGTCTTGATGCT 58.920 45.455 0.87 0.00 0.00 3.79
125 126 3.080319 AGCTCCTTTTGTCTTGATGCTC 58.920 45.455 0.00 0.00 0.00 4.26
126 127 2.163211 GCTCCTTTTGTCTTGATGCTCC 59.837 50.000 0.00 0.00 0.00 4.70
127 128 3.683802 CTCCTTTTGTCTTGATGCTCCT 58.316 45.455 0.00 0.00 0.00 3.69
128 129 4.077822 CTCCTTTTGTCTTGATGCTCCTT 58.922 43.478 0.00 0.00 0.00 3.36
129 130 4.473444 TCCTTTTGTCTTGATGCTCCTTT 58.527 39.130 0.00 0.00 0.00 3.11
130 131 4.895297 TCCTTTTGTCTTGATGCTCCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
131 132 4.986659 CCTTTTGTCTTGATGCTCCTTTTG 59.013 41.667 0.00 0.00 0.00 2.44
132 133 3.648339 TTGTCTTGATGCTCCTTTTGC 57.352 42.857 0.00 0.00 0.00 3.68
133 134 1.536766 TGTCTTGATGCTCCTTTTGCG 59.463 47.619 0.00 0.00 0.00 4.85
134 135 1.806542 GTCTTGATGCTCCTTTTGCGA 59.193 47.619 0.00 0.00 0.00 5.10
135 136 2.079158 TCTTGATGCTCCTTTTGCGAG 58.921 47.619 0.00 0.00 0.00 5.03
144 145 4.522297 CTCCTTTTGCGAGCTGTAATAC 57.478 45.455 0.00 0.00 0.00 1.89
145 146 4.184629 CTCCTTTTGCGAGCTGTAATACT 58.815 43.478 0.00 0.00 0.00 2.12
146 147 4.575885 TCCTTTTGCGAGCTGTAATACTT 58.424 39.130 0.00 0.00 0.00 2.24
147 148 5.001232 TCCTTTTGCGAGCTGTAATACTTT 58.999 37.500 0.00 0.00 0.00 2.66
148 149 5.088739 CCTTTTGCGAGCTGTAATACTTTG 58.911 41.667 0.00 0.00 0.00 2.77
149 150 5.106712 CCTTTTGCGAGCTGTAATACTTTGA 60.107 40.000 0.00 0.00 0.00 2.69
150 151 5.933187 TTTGCGAGCTGTAATACTTTGAA 57.067 34.783 0.00 0.00 0.00 2.69
151 152 6.494893 TTTGCGAGCTGTAATACTTTGAAT 57.505 33.333 0.00 0.00 0.00 2.57
152 153 7.603963 TTTGCGAGCTGTAATACTTTGAATA 57.396 32.000 0.00 0.00 0.00 1.75
153 154 6.583912 TGCGAGCTGTAATACTTTGAATAC 57.416 37.500 0.00 0.00 0.00 1.89
154 155 6.338146 TGCGAGCTGTAATACTTTGAATACT 58.662 36.000 0.00 0.00 0.00 2.12
155 156 6.255670 TGCGAGCTGTAATACTTTGAATACTG 59.744 38.462 0.00 0.00 0.00 2.74
156 157 6.255887 GCGAGCTGTAATACTTTGAATACTGT 59.744 38.462 0.00 0.00 0.00 3.55
157 158 7.201530 GCGAGCTGTAATACTTTGAATACTGTT 60.202 37.037 0.00 0.00 0.00 3.16
158 159 8.656849 CGAGCTGTAATACTTTGAATACTGTTT 58.343 33.333 0.00 0.00 0.00 2.83
159 160 9.760660 GAGCTGTAATACTTTGAATACTGTTTG 57.239 33.333 0.00 0.00 0.00 2.93
160 161 8.237267 AGCTGTAATACTTTGAATACTGTTTGC 58.763 33.333 0.00 0.00 0.00 3.68
161 162 8.237267 GCTGTAATACTTTGAATACTGTTTGCT 58.763 33.333 0.00 0.00 0.00 3.91
166 167 9.683069 AATACTTTGAATACTGTTTGCTTTGAG 57.317 29.630 0.00 0.00 0.00 3.02
167 168 7.333528 ACTTTGAATACTGTTTGCTTTGAGA 57.666 32.000 0.00 0.00 0.00 3.27
168 169 7.196331 ACTTTGAATACTGTTTGCTTTGAGAC 58.804 34.615 0.00 0.00 0.00 3.36
169 170 6.942532 TTGAATACTGTTTGCTTTGAGACT 57.057 33.333 0.00 0.00 0.00 3.24
170 171 6.942532 TGAATACTGTTTGCTTTGAGACTT 57.057 33.333 0.00 0.00 0.00 3.01
171 172 7.333528 TGAATACTGTTTGCTTTGAGACTTT 57.666 32.000 0.00 0.00 0.00 2.66
172 173 7.771183 TGAATACTGTTTGCTTTGAGACTTTT 58.229 30.769 0.00 0.00 0.00 2.27
173 174 8.898761 TGAATACTGTTTGCTTTGAGACTTTTA 58.101 29.630 0.00 0.00 0.00 1.52
174 175 9.730420 GAATACTGTTTGCTTTGAGACTTTTAA 57.270 29.630 0.00 0.00 0.00 1.52
183 184 9.801873 TTGCTTTGAGACTTTTAATAATATGGC 57.198 29.630 0.00 0.00 0.00 4.40
184 185 9.189156 TGCTTTGAGACTTTTAATAATATGGCT 57.811 29.630 0.00 0.00 0.00 4.75
185 186 9.455847 GCTTTGAGACTTTTAATAATATGGCTG 57.544 33.333 0.00 0.00 0.00 4.85
186 187 9.455847 CTTTGAGACTTTTAATAATATGGCTGC 57.544 33.333 0.00 0.00 0.00 5.25
187 188 8.518430 TTGAGACTTTTAATAATATGGCTGCA 57.482 30.769 0.50 0.00 0.00 4.41
188 189 8.696043 TGAGACTTTTAATAATATGGCTGCAT 57.304 30.769 0.50 0.00 0.00 3.96
189 190 8.570488 TGAGACTTTTAATAATATGGCTGCATG 58.430 33.333 0.50 0.00 0.00 4.06
190 191 7.373493 AGACTTTTAATAATATGGCTGCATGC 58.627 34.615 11.82 11.82 41.94 4.06
191 192 7.014518 AGACTTTTAATAATATGGCTGCATGCA 59.985 33.333 21.29 21.29 45.15 3.96
192 193 7.673180 ACTTTTAATAATATGGCTGCATGCAT 58.327 30.769 22.97 9.00 45.15 3.96
193 194 7.816031 ACTTTTAATAATATGGCTGCATGCATC 59.184 33.333 22.97 17.75 45.15 3.91
194 195 7.470935 TTTAATAATATGGCTGCATGCATCT 57.529 32.000 22.97 8.65 45.15 2.90
195 196 5.995565 AATAATATGGCTGCATGCATCTT 57.004 34.783 22.97 16.05 45.15 2.40
196 197 5.995565 ATAATATGGCTGCATGCATCTTT 57.004 34.783 22.97 11.01 45.15 2.52
197 198 3.936372 ATATGGCTGCATGCATCTTTC 57.064 42.857 22.97 9.58 45.15 2.62
198 199 1.480789 ATGGCTGCATGCATCTTTCA 58.519 45.000 22.97 14.74 45.15 2.69
199 200 0.815095 TGGCTGCATGCATCTTTCAG 59.185 50.000 22.97 8.76 45.15 3.02
200 201 1.100510 GGCTGCATGCATCTTTCAGA 58.899 50.000 22.97 0.00 45.15 3.27
201 202 1.681793 GGCTGCATGCATCTTTCAGAT 59.318 47.619 22.97 0.00 45.15 2.90
210 211 2.920524 CATCTTTCAGATGCAGAGCCT 58.079 47.619 0.84 0.00 44.69 4.58
211 212 2.398252 TCTTTCAGATGCAGAGCCTG 57.602 50.000 0.00 0.00 34.12 4.85
212 213 1.065636 TCTTTCAGATGCAGAGCCTGG 60.066 52.381 0.00 0.00 31.21 4.45
213 214 0.694771 TTTCAGATGCAGAGCCTGGT 59.305 50.000 0.00 0.00 31.21 4.00
214 215 0.035725 TTCAGATGCAGAGCCTGGTG 60.036 55.000 0.00 0.00 31.21 4.17
215 216 2.113433 CAGATGCAGAGCCTGGTGC 61.113 63.158 0.00 1.09 40.29 5.01
218 219 4.994471 TGCAGAGCCTGGTGCACG 62.994 66.667 11.45 0.00 44.70 5.34
223 224 4.892965 AGCCTGGTGCACGCCAAA 62.893 61.111 11.45 0.00 44.83 3.28
224 225 3.910490 GCCTGGTGCACGCCAAAA 61.910 61.111 11.45 0.00 40.77 2.44
225 226 2.811101 CCTGGTGCACGCCAAAAA 59.189 55.556 11.45 0.00 38.18 1.94
255 256 4.753610 GGATACATCTTAGGTAAAACCGGC 59.246 45.833 0.00 0.00 44.90 6.13
257 258 2.294979 CATCTTAGGTAAAACCGGCCC 58.705 52.381 0.00 0.00 44.90 5.80
310 313 8.412608 AGATACAAAATCACTTGTACAGATCG 57.587 34.615 0.00 0.00 42.88 3.69
311 314 8.251026 AGATACAAAATCACTTGTACAGATCGA 58.749 33.333 0.00 0.00 42.88 3.59
312 315 8.771920 ATACAAAATCACTTGTACAGATCGAA 57.228 30.769 0.00 0.00 42.88 3.71
313 316 6.888430 ACAAAATCACTTGTACAGATCGAAC 58.112 36.000 0.00 0.00 37.76 3.95
338 341 3.204827 CCGGCGAATTCCCTGCTG 61.205 66.667 9.30 2.87 34.77 4.41
341 344 2.409870 GGCGAATTCCCTGCTGGTG 61.410 63.158 9.00 0.50 34.77 4.17
376 379 6.884280 ACAAAAACCACTTGAGATTAGAGG 57.116 37.500 0.00 0.00 0.00 3.69
427 441 1.126488 TCCTGTGAGCCTCATCATCC 58.874 55.000 0.00 0.00 0.00 3.51
434 448 4.596212 TGTGAGCCTCATCATCCTCATAAT 59.404 41.667 0.00 0.00 36.78 1.28
546 561 1.135431 TCTGTGCACAGCAAACAACAC 60.135 47.619 36.76 0.00 41.47 3.32
548 563 0.108898 GTGCACAGCAAACAACACCA 60.109 50.000 13.17 0.00 41.47 4.17
552 567 2.034558 GCACAGCAAACAACACCATACT 59.965 45.455 0.00 0.00 0.00 2.12
559 574 4.091509 GCAAACAACACCATACTACTCTCG 59.908 45.833 0.00 0.00 0.00 4.04
560 575 3.505464 ACAACACCATACTACTCTCGC 57.495 47.619 0.00 0.00 0.00 5.03
561 576 3.090037 ACAACACCATACTACTCTCGCT 58.910 45.455 0.00 0.00 0.00 4.93
562 577 3.128938 ACAACACCATACTACTCTCGCTC 59.871 47.826 0.00 0.00 0.00 5.03
571 586 3.422796 ACTACTCTCGCTCTTCCAAAGA 58.577 45.455 0.00 0.00 35.87 2.52
577 592 2.210116 TCGCTCTTCCAAAGACACAAC 58.790 47.619 0.00 0.00 33.12 3.32
584 599 2.733956 TCCAAAGACACAACAGCCTTT 58.266 42.857 0.00 0.00 0.00 3.11
587 602 2.038387 AAGACACAACAGCCTTTCGT 57.962 45.000 0.00 0.00 0.00 3.85
592 607 2.870411 ACACAACAGCCTTTCGTAGTTC 59.130 45.455 0.00 0.00 0.00 3.01
614 629 5.473039 TCCGTGTATCATCAGCATATGAAG 58.527 41.667 6.97 0.00 42.53 3.02
615 630 5.243730 TCCGTGTATCATCAGCATATGAAGA 59.756 40.000 6.97 3.34 42.53 2.87
631 647 3.295093 TGAAGATTTTGTCAGCCACCAA 58.705 40.909 0.00 0.00 0.00 3.67
632 648 3.318839 TGAAGATTTTGTCAGCCACCAAG 59.681 43.478 0.00 0.00 0.00 3.61
633 649 3.228188 AGATTTTGTCAGCCACCAAGA 57.772 42.857 0.00 0.00 0.00 3.02
634 650 3.771216 AGATTTTGTCAGCCACCAAGAT 58.229 40.909 0.00 0.00 0.00 2.40
635 651 4.922206 AGATTTTGTCAGCCACCAAGATA 58.078 39.130 0.00 0.00 0.00 1.98
636 652 5.513233 AGATTTTGTCAGCCACCAAGATAT 58.487 37.500 0.00 0.00 0.00 1.63
637 653 5.591877 AGATTTTGTCAGCCACCAAGATATC 59.408 40.000 0.00 0.00 0.00 1.63
638 654 4.574674 TTTGTCAGCCACCAAGATATCT 57.425 40.909 0.00 0.00 0.00 1.98
639 655 3.548745 TGTCAGCCACCAAGATATCTG 57.451 47.619 5.86 0.00 0.00 2.90
640 656 2.216898 GTCAGCCACCAAGATATCTGC 58.783 52.381 5.86 4.92 0.00 4.26
641 657 2.121948 TCAGCCACCAAGATATCTGCT 58.878 47.619 5.86 7.34 0.00 4.24
642 658 2.103771 TCAGCCACCAAGATATCTGCTC 59.896 50.000 5.86 0.00 0.00 4.26
643 659 2.104451 CAGCCACCAAGATATCTGCTCT 59.896 50.000 5.86 0.00 0.00 4.09
717 733 2.224079 CACTATTGGACACACACAGCAC 59.776 50.000 0.00 0.00 0.00 4.40
764 785 0.739112 CGAGCCTGTCTTTCCTGAGC 60.739 60.000 0.00 0.00 0.00 4.26
850 871 3.893813 GCAGGCCAAAAGATATGAGGAAT 59.106 43.478 5.01 0.00 0.00 3.01
851 872 4.261909 GCAGGCCAAAAGATATGAGGAATG 60.262 45.833 5.01 0.00 0.00 2.67
853 874 4.891756 AGGCCAAAAGATATGAGGAATGTG 59.108 41.667 5.01 0.00 0.00 3.21
861 882 1.945387 ATGAGGAATGTGTAGCAGCG 58.055 50.000 0.00 0.00 0.00 5.18
880 913 4.444024 CGGCCATTCACACGTGCG 62.444 66.667 17.22 6.29 0.00 5.34
893 927 3.394836 GTGCGCCTCCTCCTCCTT 61.395 66.667 4.18 0.00 0.00 3.36
901 935 1.970352 CTCCTCCTCCTTGCTCTGCC 61.970 65.000 0.00 0.00 0.00 4.85
1100 1137 3.949113 GGTACTCCTCTACTTCTCCACTG 59.051 52.174 0.00 0.00 0.00 3.66
1108 1145 4.014406 TCTACTTCTCCACTGCGTCAATA 58.986 43.478 0.00 0.00 0.00 1.90
1116 1153 3.074412 CCACTGCGTCAATAGTTCCTTT 58.926 45.455 0.00 0.00 0.00 3.11
1121 1158 5.761234 ACTGCGTCAATAGTTCCTTTTGTTA 59.239 36.000 0.00 0.00 0.00 2.41
1154 1191 0.813210 GCTCAAGCTTATGCCTCGCT 60.813 55.000 0.00 0.00 40.80 4.93
1240 1277 2.592861 GCATCCCCTGCCGATGAC 60.593 66.667 2.07 0.00 45.66 3.06
1241 1278 3.112205 GCATCCCCTGCCGATGACT 62.112 63.158 2.07 0.00 45.66 3.41
1242 1279 1.227764 CATCCCCTGCCGATGACTG 60.228 63.158 0.00 0.00 39.64 3.51
1243 1280 2.446848 ATCCCCTGCCGATGACTGG 61.447 63.158 0.00 0.00 0.00 4.00
1251 1288 2.456119 CCGATGACTGGCGCAGTTC 61.456 63.158 10.83 1.52 45.44 3.01
1294 1331 1.800805 CGTGTTGCTCATCCTTCTGT 58.199 50.000 0.00 0.00 0.00 3.41
1298 1335 2.369860 TGTTGCTCATCCTTCTGTCTGT 59.630 45.455 0.00 0.00 0.00 3.41
1303 1340 3.594134 CTCATCCTTCTGTCTGTCCAAC 58.406 50.000 0.00 0.00 0.00 3.77
1330 1367 6.006275 TGATTATTTCAGGGGGAGAAAGAG 57.994 41.667 0.00 0.00 38.27 2.85
1495 1532 3.692406 GTCAAGGAGCGGTCCCGT 61.692 66.667 29.33 15.62 45.26 5.28
2044 2081 3.988819 TGCAGCACAAGGAAAAATAACC 58.011 40.909 0.00 0.00 0.00 2.85
2197 2237 1.476833 GGTCCAAGTTTCTGTGGCAGA 60.477 52.381 0.00 0.00 38.87 4.26
2240 2280 5.163754 CGTTTGTTGGATTTGTCTCTATCCC 60.164 44.000 0.00 0.00 39.69 3.85
2242 2282 6.884472 TTGTTGGATTTGTCTCTATCCCTA 57.116 37.500 0.00 0.00 39.69 3.53
2333 2373 9.227777 ACTTGTAAAATGTAGGAACCTAATGAC 57.772 33.333 1.88 0.00 0.00 3.06
2348 2388 5.413833 ACCTAATGACATGCACTCTCTTTTG 59.586 40.000 0.00 0.00 0.00 2.44
2419 2462 2.459934 GGACCGCAAGTTTTGACTTTG 58.540 47.619 0.00 0.00 0.00 2.77
2474 2517 5.649782 ACATTGTTATCTGGGCAAGAAAG 57.350 39.130 0.00 0.00 38.79 2.62
2489 2532 4.675146 GCAAGAAAGTGAACAGTTTGCTCA 60.675 41.667 11.57 0.00 34.36 4.26
2509 2552 7.823665 TGCTCATATCAGGATAAATGCAATTC 58.176 34.615 0.00 0.00 33.67 2.17
2548 2591 1.210478 ACAAACAGTCAGCTGAGGTGT 59.790 47.619 18.89 20.23 45.28 4.16
2550 2593 2.246719 AACAGTCAGCTGAGGTGTTC 57.753 50.000 27.57 13.38 45.28 3.18
2608 2659 7.496529 TCACAATTCCTGAAGTTCTACAAAG 57.503 36.000 4.17 0.00 0.00 2.77
2621 2675 6.174049 AGTTCTACAAAGGAAGAATGCTACC 58.826 40.000 0.00 0.00 34.43 3.18
2704 2775 9.770097 CATGACATACTTCTCCAATAATGTACT 57.230 33.333 0.00 0.00 0.00 2.73
3039 3118 0.878523 TTGACAGTGTTTCCTCCGCG 60.879 55.000 0.00 0.00 0.00 6.46
3570 3649 6.410540 ACTCGCTCAAATAAAGGAGAAGAAT 58.589 36.000 0.00 0.00 32.87 2.40
3876 3955 0.840617 TTGCTGGTGGTGACAAGGTA 59.159 50.000 0.00 0.00 46.06 3.08
3930 4009 3.006323 AGAGTCTCATGAAACGTGAAGCT 59.994 43.478 1.94 0.00 0.00 3.74
4055 4134 4.660303 TGTAAGTATCTTCAGATGGCCCAT 59.340 41.667 0.00 0.00 36.05 4.00
4057 4136 3.321039 AGTATCTTCAGATGGCCCATCA 58.679 45.455 25.13 4.80 42.72 3.07
4225 4305 4.293662 AGGAGAATTTGTTGAGTCCCTC 57.706 45.455 0.00 0.00 0.00 4.30
4229 4309 0.673644 ATTTGTTGAGTCCCTCGCGG 60.674 55.000 6.13 0.00 32.35 6.46
4264 4344 2.726760 AGCAAGATTCGCGAATATCGAC 59.273 45.455 32.58 21.15 43.74 4.20
4327 4407 5.589050 GTCATTCTTGGTAAGACCCCATTAC 59.411 44.000 0.00 0.00 37.50 1.89
4345 4425 9.672673 CCCCATTACTTTATCCATGTTAGATAG 57.327 37.037 0.00 0.00 0.00 2.08
4372 4452 1.747709 AGGCTGCACATGATCAACTC 58.252 50.000 0.00 0.00 0.00 3.01
4633 4715 5.684704 TCCCAAATAGCATAGTTCTTCAGG 58.315 41.667 0.00 0.00 0.00 3.86
4641 4723 6.313519 AGCATAGTTCTTCAGGGTAAATCA 57.686 37.500 0.00 0.00 0.00 2.57
4700 4782 4.161333 GCGAATTCCAAGATGTTTGTGAG 58.839 43.478 0.00 0.00 0.00 3.51
4705 4787 5.756195 TTCCAAGATGTTTGTGAGAAGTG 57.244 39.130 0.00 0.00 0.00 3.16
4711 4793 4.576463 AGATGTTTGTGAGAAGTGTTGGTC 59.424 41.667 0.00 0.00 0.00 4.02
4782 4864 3.618507 GCAGAGTGGAGCAGAGTGTTTAT 60.619 47.826 0.00 0.00 0.00 1.40
4860 4942 5.104193 ACCAGTTGATTGGCTATCTGATTCT 60.104 40.000 10.19 0.02 42.18 2.40
4891 4973 3.754188 GCAAGGTGCACATTTCTAGAG 57.246 47.619 20.43 5.90 44.26 2.43
4892 4974 3.077359 GCAAGGTGCACATTTCTAGAGT 58.923 45.455 20.43 0.00 44.26 3.24
4893 4975 3.126000 GCAAGGTGCACATTTCTAGAGTC 59.874 47.826 20.43 0.00 44.26 3.36
4894 4976 4.573900 CAAGGTGCACATTTCTAGAGTCT 58.426 43.478 20.43 0.00 0.00 3.24
4895 4977 5.724328 CAAGGTGCACATTTCTAGAGTCTA 58.276 41.667 20.43 0.00 0.00 2.59
4896 4978 6.166279 CAAGGTGCACATTTCTAGAGTCTAA 58.834 40.000 20.43 0.00 0.00 2.10
4897 4979 6.360370 AGGTGCACATTTCTAGAGTCTAAA 57.640 37.500 20.43 0.00 0.00 1.85
4898 4980 6.402222 AGGTGCACATTTCTAGAGTCTAAAG 58.598 40.000 20.43 0.00 0.00 1.85
4903 4985 8.803235 TGCACATTTCTAGAGTCTAAAGTCTAA 58.197 33.333 0.64 0.00 37.06 2.10
4921 5003 7.005709 AGTCTAAACTACTTATGTTGGCAGT 57.994 36.000 0.00 0.00 32.59 4.40
4958 5044 9.499479 AGAGCATACAATTACTAATTCCTCATG 57.501 33.333 0.00 0.00 0.00 3.07
4967 5053 9.553064 AATTACTAATTCCTCATGAAGCTGTAG 57.447 33.333 0.00 0.00 36.14 2.74
4968 5054 6.552445 ACTAATTCCTCATGAAGCTGTAGT 57.448 37.500 0.00 0.00 36.14 2.73
4970 5056 7.493367 ACTAATTCCTCATGAAGCTGTAGTAC 58.507 38.462 0.00 0.00 36.14 2.73
4971 5057 5.939764 ATTCCTCATGAAGCTGTAGTACA 57.060 39.130 2.36 2.36 36.14 2.90
4972 5058 5.911752 ATTCCTCATGAAGCTGTAGTACAG 58.088 41.667 23.53 23.53 40.94 2.74
4973 5059 3.701542 TCCTCATGAAGCTGTAGTACAGG 59.298 47.826 27.48 12.66 46.01 4.00
4993 5079 6.644347 ACAGGTTTCGAGTCAGAATATGAAT 58.356 36.000 0.00 0.00 40.43 2.57
5056 5142 1.202758 TCAAACTGGCATCCGTTCAGT 60.203 47.619 0.00 0.00 42.77 3.41
5061 5147 2.480555 GCATCCGTTCAGTTGGCG 59.519 61.111 0.00 0.00 0.00 5.69
5186 5272 6.295123 GCCTTCCGAGTTCATCAGGTATATAA 60.295 42.308 0.00 0.00 0.00 0.98
5187 5273 7.091443 CCTTCCGAGTTCATCAGGTATATAAC 58.909 42.308 0.00 0.00 0.00 1.89
5188 5274 7.039644 CCTTCCGAGTTCATCAGGTATATAACT 60.040 40.741 0.00 0.00 0.00 2.24
5189 5275 7.215719 TCCGAGTTCATCAGGTATATAACTG 57.784 40.000 20.02 20.02 36.07 3.16
5191 5277 7.040617 TCCGAGTTCATCAGGTATATAACTGTC 60.041 40.741 23.91 13.70 36.17 3.51
5192 5278 7.085116 CGAGTTCATCAGGTATATAACTGTCC 58.915 42.308 23.91 10.76 36.17 4.02
5193 5279 7.255486 CGAGTTCATCAGGTATATAACTGTCCA 60.255 40.741 23.91 8.63 36.17 4.02
5406 5493 2.029904 GAGTCTTCAGGATTGCGCGC 62.030 60.000 27.26 27.26 0.00 6.86
5407 5494 2.103042 GTCTTCAGGATTGCGCGCT 61.103 57.895 33.29 13.70 0.00 5.92
5408 5495 1.811266 TCTTCAGGATTGCGCGCTC 60.811 57.895 33.29 22.06 0.00 5.03
5426 5513 2.742204 GCTCCTCCGGTCAGGTTAATTC 60.742 54.545 8.95 0.00 41.99 2.17
5427 5514 1.479323 TCCTCCGGTCAGGTTAATTCG 59.521 52.381 8.95 0.00 41.99 3.34
5438 5525 2.025321 AGGTTAATTCGGAGGGCACAAT 60.025 45.455 0.00 0.00 0.00 2.71
5450 5537 2.308866 AGGGCACAATTAGTTGGCTAGT 59.691 45.455 2.81 0.00 39.70 2.57
5470 5557 8.281194 GGCTAGTTAAACTGTACAAAAGAGAAC 58.719 37.037 0.00 0.00 0.00 3.01
5482 5569 9.179909 TGTACAAAAGAGAACTGTAAATTCCAA 57.820 29.630 0.00 0.00 0.00 3.53
5547 5637 8.298729 TCAGATCATACTATAAGCATACCAGG 57.701 38.462 0.00 0.00 0.00 4.45
5639 5729 7.820578 ACCACAGTAATGAGATACTACCTAC 57.179 40.000 0.00 0.00 34.40 3.18
5640 5730 7.584532 ACCACAGTAATGAGATACTACCTACT 58.415 38.462 0.00 0.00 34.40 2.57
5641 5731 8.721479 ACCACAGTAATGAGATACTACCTACTA 58.279 37.037 0.00 0.00 34.40 1.82
5642 5732 9.001542 CCACAGTAATGAGATACTACCTACTAC 57.998 40.741 0.00 0.00 34.40 2.73
5643 5733 9.001542 CACAGTAATGAGATACTACCTACTACC 57.998 40.741 0.00 0.00 34.40 3.18
5644 5734 8.947305 ACAGTAATGAGATACTACCTACTACCT 58.053 37.037 0.00 0.00 34.40 3.08
5645 5735 9.439500 CAGTAATGAGATACTACCTACTACCTC 57.561 40.741 0.00 0.00 34.40 3.85
5646 5736 8.605065 AGTAATGAGATACTACCTACTACCTCC 58.395 40.741 0.00 0.00 34.40 4.30
5647 5737 5.480642 TGAGATACTACCTACTACCTCCG 57.519 47.826 0.00 0.00 0.00 4.63
5648 5738 4.904251 TGAGATACTACCTACTACCTCCGT 59.096 45.833 0.00 0.00 0.00 4.69
5649 5739 5.011533 TGAGATACTACCTACTACCTCCGTC 59.988 48.000 0.00 0.00 0.00 4.79
5650 5740 5.154418 AGATACTACCTACTACCTCCGTCT 58.846 45.833 0.00 0.00 0.00 4.18
5651 5741 6.318913 AGATACTACCTACTACCTCCGTCTA 58.681 44.000 0.00 0.00 0.00 2.59
5652 5742 4.953940 ACTACCTACTACCTCCGTCTAG 57.046 50.000 0.00 0.00 0.00 2.43
5653 5743 3.645687 ACTACCTACTACCTCCGTCTAGG 59.354 52.174 0.00 0.00 42.82 3.02
5663 5753 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
5664 5754 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
5665 5755 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
5666 5756 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
5667 5757 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
5668 5758 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
5675 5765 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
5676 5766 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
5677 5767 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
5678 5768 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
5679 5769 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
5680 5770 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
5681 5771 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
5682 5772 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
5683 5773 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
5684 5774 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
5685 5775 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
5686 5776 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
5687 5777 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
5688 5778 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
5689 5779 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
5690 5780 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
5691 5781 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
5692 5782 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
5693 5783 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
5694 5784 6.238402 CGTAGTTCTAGGTCATCGATTTGAGA 60.238 42.308 0.00 0.00 0.00 3.27
5695 5785 6.531503 AGTTCTAGGTCATCGATTTGAGAA 57.468 37.500 0.00 0.00 0.00 2.87
5696 5786 6.936279 AGTTCTAGGTCATCGATTTGAGAAA 58.064 36.000 0.00 0.00 0.00 2.52
5697 5787 7.560368 AGTTCTAGGTCATCGATTTGAGAAAT 58.440 34.615 0.00 0.00 0.00 2.17
5698 5788 8.043710 AGTTCTAGGTCATCGATTTGAGAAATT 58.956 33.333 0.00 0.00 0.00 1.82
5699 5789 9.314321 GTTCTAGGTCATCGATTTGAGAAATTA 57.686 33.333 0.00 0.00 0.00 1.40
5700 5790 9.884636 TTCTAGGTCATCGATTTGAGAAATTAA 57.115 29.630 0.00 0.00 0.00 1.40
5701 5791 9.884636 TCTAGGTCATCGATTTGAGAAATTAAA 57.115 29.630 0.00 0.00 0.00 1.52
5816 5906 9.886132 ATTTAGATAGTTAAATCGTCAACCTGT 57.114 29.630 0.00 0.00 29.49 4.00
5819 5909 8.699283 AGATAGTTAAATCGTCAACCTGTAAC 57.301 34.615 0.00 0.00 0.00 2.50
5820 5910 8.529476 AGATAGTTAAATCGTCAACCTGTAACT 58.471 33.333 0.00 0.00 35.24 2.24
5821 5911 9.793252 GATAGTTAAATCGTCAACCTGTAACTA 57.207 33.333 0.00 0.00 37.13 2.24
5822 5912 7.880059 AGTTAAATCGTCAACCTGTAACTAC 57.120 36.000 0.00 0.00 30.60 2.73
5823 5913 6.583806 AGTTAAATCGTCAACCTGTAACTACG 59.416 38.462 0.00 0.00 30.60 3.51
5824 5914 2.336554 TCGTCAACCTGTAACTACGC 57.663 50.000 0.00 0.00 0.00 4.42
5825 5915 0.979811 CGTCAACCTGTAACTACGCG 59.020 55.000 3.53 3.53 0.00 6.01
5826 5916 1.400113 CGTCAACCTGTAACTACGCGA 60.400 52.381 15.93 0.00 0.00 5.87
5827 5917 2.664916 GTCAACCTGTAACTACGCGAA 58.335 47.619 15.93 0.00 0.00 4.70
5828 5918 3.248266 GTCAACCTGTAACTACGCGAAT 58.752 45.455 15.93 0.00 0.00 3.34
5829 5919 3.060363 GTCAACCTGTAACTACGCGAATG 59.940 47.826 15.93 4.47 0.00 2.67
5830 5920 3.057386 TCAACCTGTAACTACGCGAATGA 60.057 43.478 15.93 0.00 0.00 2.57
5831 5921 2.872370 ACCTGTAACTACGCGAATGAC 58.128 47.619 15.93 4.45 0.00 3.06
5832 5922 2.490903 ACCTGTAACTACGCGAATGACT 59.509 45.455 15.93 0.00 0.00 3.41
5833 5923 3.057033 ACCTGTAACTACGCGAATGACTT 60.057 43.478 15.93 0.00 0.00 3.01
5834 5924 4.156556 ACCTGTAACTACGCGAATGACTTA 59.843 41.667 15.93 0.00 0.00 2.24
5835 5925 5.163581 ACCTGTAACTACGCGAATGACTTAT 60.164 40.000 15.93 0.00 0.00 1.73
5836 5926 5.747197 CCTGTAACTACGCGAATGACTTATT 59.253 40.000 15.93 0.00 0.00 1.40
5837 5927 6.074994 CCTGTAACTACGCGAATGACTTATTC 60.075 42.308 15.93 0.00 41.46 1.75
5838 5928 6.324042 TGTAACTACGCGAATGACTTATTCA 58.676 36.000 15.93 0.00 44.42 2.57
5840 5930 6.512177 AACTACGCGAATGACTTATTCATC 57.488 37.500 15.93 0.00 44.86 2.92
5841 5931 4.675565 ACTACGCGAATGACTTATTCATCG 59.324 41.667 15.93 0.00 44.86 3.84
5842 5932 3.702330 ACGCGAATGACTTATTCATCGA 58.298 40.909 15.93 0.00 44.86 3.59
5843 5933 3.731216 ACGCGAATGACTTATTCATCGAG 59.269 43.478 15.93 0.00 44.86 4.04
5844 5934 3.975035 CGCGAATGACTTATTCATCGAGA 59.025 43.478 0.00 0.00 44.86 4.04
5845 5935 4.143721 CGCGAATGACTTATTCATCGAGAC 60.144 45.833 0.00 0.00 44.86 3.36
5846 5936 4.143721 GCGAATGACTTATTCATCGAGACG 60.144 45.833 0.00 0.00 44.86 4.18
5847 5937 4.380087 CGAATGACTTATTCATCGAGACGG 59.620 45.833 0.00 0.00 44.86 4.79
5848 5938 5.515797 AATGACTTATTCATCGAGACGGA 57.484 39.130 0.00 0.00 44.86 4.69
5849 5939 4.553756 TGACTTATTCATCGAGACGGAG 57.446 45.455 0.00 0.00 0.00 4.63
5850 5940 3.315470 TGACTTATTCATCGAGACGGAGG 59.685 47.826 0.00 0.00 0.00 4.30
5851 5941 3.288964 ACTTATTCATCGAGACGGAGGT 58.711 45.455 0.00 0.00 0.00 3.85
5852 5942 4.458397 ACTTATTCATCGAGACGGAGGTA 58.542 43.478 0.00 0.00 0.00 3.08
5853 5943 4.515944 ACTTATTCATCGAGACGGAGGTAG 59.484 45.833 0.00 0.00 0.00 3.18
5876 5966 4.287766 ACCTAGTTTTGGCTACTTCCAG 57.712 45.455 0.00 0.00 37.44 3.86
5903 5993 3.499048 CAATCTGTTGCAGTTGAGATGC 58.501 45.455 0.00 0.00 44.11 3.91
5908 5998 4.315588 GCAGTTGAGATGCCTGCT 57.684 55.556 3.75 0.00 46.23 4.24
5909 5999 2.096596 GCAGTTGAGATGCCTGCTC 58.903 57.895 3.75 0.00 46.23 4.26
5954 6044 6.348458 CGTCAGATTAAAATGCCTTGAACTCA 60.348 38.462 0.00 0.00 0.00 3.41
5955 6045 7.370383 GTCAGATTAAAATGCCTTGAACTCAA 58.630 34.615 0.00 0.00 0.00 3.02
5956 6046 8.031277 GTCAGATTAAAATGCCTTGAACTCAAT 58.969 33.333 0.00 0.00 35.02 2.57
5957 6047 8.246180 TCAGATTAAAATGCCTTGAACTCAATC 58.754 33.333 0.00 0.00 35.02 2.67
5958 6048 7.490402 CAGATTAAAATGCCTTGAACTCAATCC 59.510 37.037 0.00 0.00 35.02 3.01
5959 6049 3.855689 AAATGCCTTGAACTCAATCCG 57.144 42.857 0.00 0.00 35.02 4.18
5960 6050 1.755179 ATGCCTTGAACTCAATCCGG 58.245 50.000 0.00 0.00 35.02 5.14
5961 6051 0.960364 TGCCTTGAACTCAATCCGGC 60.960 55.000 12.13 12.13 41.98 6.13
5962 6052 0.678048 GCCTTGAACTCAATCCGGCT 60.678 55.000 11.87 0.00 39.90 5.52
5963 6053 1.406887 GCCTTGAACTCAATCCGGCTA 60.407 52.381 11.87 0.00 39.90 3.93
5964 6054 2.555199 CCTTGAACTCAATCCGGCTAG 58.445 52.381 0.00 0.00 35.02 3.42
5965 6055 1.936547 CTTGAACTCAATCCGGCTAGC 59.063 52.381 6.04 6.04 35.02 3.42
5966 6056 1.195115 TGAACTCAATCCGGCTAGCT 58.805 50.000 15.72 0.00 0.00 3.32
5967 6057 1.137086 TGAACTCAATCCGGCTAGCTC 59.863 52.381 15.72 3.82 0.00 4.09
5968 6058 0.466124 AACTCAATCCGGCTAGCTCC 59.534 55.000 15.72 0.00 0.00 4.70
5969 6059 1.369321 CTCAATCCGGCTAGCTCCC 59.631 63.158 15.72 0.00 0.00 4.30
5970 6060 2.029666 CAATCCGGCTAGCTCCCG 59.970 66.667 15.72 16.50 45.17 5.14
5976 6066 3.631046 GGCTAGCTCCCGGGGATG 61.631 72.222 23.50 12.70 0.00 3.51
5977 6067 3.631046 GCTAGCTCCCGGGGATGG 61.631 72.222 23.50 13.44 0.00 3.51
5986 6076 3.566210 CGGGGATGGGCGGGTAAT 61.566 66.667 0.00 0.00 0.00 1.89
5987 6077 2.115266 GGGGATGGGCGGGTAATG 59.885 66.667 0.00 0.00 0.00 1.90
5988 6078 2.597510 GGGATGGGCGGGTAATGC 60.598 66.667 0.00 0.00 0.00 3.56
5989 6079 2.515901 GGATGGGCGGGTAATGCT 59.484 61.111 0.00 0.00 0.00 3.79
5990 6080 1.152756 GGATGGGCGGGTAATGCTT 60.153 57.895 0.00 0.00 0.00 3.91
5991 6081 0.109723 GGATGGGCGGGTAATGCTTA 59.890 55.000 0.00 0.00 0.00 3.09
5992 6082 1.523758 GATGGGCGGGTAATGCTTAG 58.476 55.000 0.00 0.00 0.00 2.18
5993 6083 0.110486 ATGGGCGGGTAATGCTTAGG 59.890 55.000 0.00 0.00 0.00 2.69
5994 6084 1.228154 GGGCGGGTAATGCTTAGGG 60.228 63.158 0.00 0.00 0.00 3.53
5995 6085 1.530283 GGCGGGTAATGCTTAGGGT 59.470 57.895 0.00 0.00 0.00 4.34
5996 6086 0.534427 GGCGGGTAATGCTTAGGGTC 60.534 60.000 0.00 0.00 0.00 4.46
5997 6087 0.878961 GCGGGTAATGCTTAGGGTCG 60.879 60.000 0.00 0.00 0.00 4.79
5998 6088 0.748450 CGGGTAATGCTTAGGGTCGA 59.252 55.000 0.00 0.00 0.00 4.20
5999 6089 1.343465 CGGGTAATGCTTAGGGTCGAT 59.657 52.381 0.00 0.00 0.00 3.59
6000 6090 2.224209 CGGGTAATGCTTAGGGTCGATT 60.224 50.000 0.00 0.00 0.00 3.34
6001 6091 3.139077 GGGTAATGCTTAGGGTCGATTG 58.861 50.000 0.00 0.00 0.00 2.67
6002 6092 2.548480 GGTAATGCTTAGGGTCGATTGC 59.452 50.000 0.00 0.00 0.00 3.56
6062 6200 2.035832 GGGATTTTTACATGGCATCGGG 59.964 50.000 0.00 0.00 0.00 5.14
6135 6288 4.367023 CGGACCGACCCTGCGAAA 62.367 66.667 8.64 0.00 34.64 3.46
6187 6349 4.222145 AGTTATTTAGGTTCCGTGCTCTGA 59.778 41.667 0.00 0.00 0.00 3.27
6195 6357 3.753434 CGTGCTCTGAGCCGGAGT 61.753 66.667 25.61 0.00 41.51 3.85
6197 6359 2.283173 TGCTCTGAGCCGGAGTGA 60.283 61.111 25.61 3.31 41.51 3.41
6249 6425 1.140804 GTCTGAAGGCCGAGAGAGC 59.859 63.158 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.686325 GCCCGAGCTACCATCTTCCA 61.686 60.000 0.00 0.00 35.50 3.53
1 2 1.069935 GCCCGAGCTACCATCTTCC 59.930 63.158 0.00 0.00 35.50 3.46
2 3 4.760757 GCCCGAGCTACCATCTTC 57.239 61.111 0.00 0.00 35.50 2.87
12 13 1.429463 CGGTTGAATATAGCCCGAGC 58.571 55.000 0.00 0.00 41.08 5.03
13 14 1.343465 ACCGGTTGAATATAGCCCGAG 59.657 52.381 0.00 0.00 41.08 4.63
14 15 1.416243 ACCGGTTGAATATAGCCCGA 58.584 50.000 0.00 0.00 41.08 5.14
15 16 2.249844 AACCGGTTGAATATAGCCCG 57.750 50.000 21.56 0.00 38.39 6.13
16 17 2.621526 CCAAACCGGTTGAATATAGCCC 59.378 50.000 23.08 0.00 39.87 5.19
17 18 3.547746 TCCAAACCGGTTGAATATAGCC 58.452 45.455 23.08 0.00 39.87 3.93
18 19 4.023193 CCATCCAAACCGGTTGAATATAGC 60.023 45.833 23.08 0.00 39.87 2.97
19 20 4.023193 GCCATCCAAACCGGTTGAATATAG 60.023 45.833 23.08 8.73 39.87 1.31
20 21 3.886505 GCCATCCAAACCGGTTGAATATA 59.113 43.478 23.08 4.03 39.87 0.86
21 22 2.693074 GCCATCCAAACCGGTTGAATAT 59.307 45.455 23.08 9.64 39.87 1.28
22 23 2.096248 GCCATCCAAACCGGTTGAATA 58.904 47.619 23.08 7.51 39.87 1.75
23 24 0.894835 GCCATCCAAACCGGTTGAAT 59.105 50.000 23.08 11.91 39.87 2.57
24 25 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
25 26 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
26 27 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
27 28 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
29 30 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
30 31 3.496131 CGACCGCCATCCAAACCG 61.496 66.667 0.00 0.00 0.00 4.44
31 32 3.810896 GCGACCGCCATCCAAACC 61.811 66.667 2.55 0.00 34.56 3.27
32 33 1.022451 TAAGCGACCGCCATCCAAAC 61.022 55.000 11.03 0.00 43.17 2.93
33 34 0.321741 TTAAGCGACCGCCATCCAAA 60.322 50.000 11.03 0.00 43.17 3.28
34 35 1.022451 GTTAAGCGACCGCCATCCAA 61.022 55.000 11.03 0.00 43.17 3.53
35 36 1.448893 GTTAAGCGACCGCCATCCA 60.449 57.895 11.03 0.00 43.17 3.41
36 37 1.022451 TTGTTAAGCGACCGCCATCC 61.022 55.000 11.03 0.00 43.17 3.51
37 38 0.800012 TTTGTTAAGCGACCGCCATC 59.200 50.000 11.03 0.80 43.17 3.51
38 39 1.240256 TTTTGTTAAGCGACCGCCAT 58.760 45.000 11.03 3.27 43.17 4.40
39 40 1.240256 ATTTTGTTAAGCGACCGCCA 58.760 45.000 11.03 0.00 43.17 5.69
40 41 2.223180 CCTATTTTGTTAAGCGACCGCC 60.223 50.000 11.03 0.00 43.17 6.13
41 42 2.674357 TCCTATTTTGTTAAGCGACCGC 59.326 45.455 6.25 6.25 42.33 5.68
42 43 4.932268 TTCCTATTTTGTTAAGCGACCG 57.068 40.909 0.00 0.00 0.00 4.79
43 44 6.679327 AGATTCCTATTTTGTTAAGCGACC 57.321 37.500 0.00 0.00 0.00 4.79
44 45 8.421673 ACTAGATTCCTATTTTGTTAAGCGAC 57.578 34.615 0.00 0.00 0.00 5.19
45 46 9.095065 GAACTAGATTCCTATTTTGTTAAGCGA 57.905 33.333 0.00 0.00 0.00 4.93
46 47 9.099454 AGAACTAGATTCCTATTTTGTTAAGCG 57.901 33.333 0.00 0.00 38.16 4.68
52 53 9.495382 AGGACTAGAACTAGATTCCTATTTTGT 57.505 33.333 14.64 0.00 37.09 2.83
59 60 9.945633 AAGATAAAGGACTAGAACTAGATTCCT 57.054 33.333 14.64 13.36 39.16 3.36
62 63 9.716556 TGGAAGATAAAGGACTAGAACTAGATT 57.283 33.333 14.64 7.26 36.97 2.40
63 64 9.138596 GTGGAAGATAAAGGACTAGAACTAGAT 57.861 37.037 14.64 0.00 36.97 1.98
64 65 7.560626 GGTGGAAGATAAAGGACTAGAACTAGA 59.439 40.741 14.64 0.00 36.97 2.43
65 66 7.468906 CGGTGGAAGATAAAGGACTAGAACTAG 60.469 44.444 0.00 7.24 39.04 2.57
66 67 6.320672 CGGTGGAAGATAAAGGACTAGAACTA 59.679 42.308 0.00 0.00 0.00 2.24
67 68 5.127356 CGGTGGAAGATAAAGGACTAGAACT 59.873 44.000 0.00 0.00 0.00 3.01
68 69 5.349809 CGGTGGAAGATAAAGGACTAGAAC 58.650 45.833 0.00 0.00 0.00 3.01
69 70 4.404715 CCGGTGGAAGATAAAGGACTAGAA 59.595 45.833 0.00 0.00 0.00 2.10
70 71 3.958798 CCGGTGGAAGATAAAGGACTAGA 59.041 47.826 0.00 0.00 0.00 2.43
71 72 3.705072 ACCGGTGGAAGATAAAGGACTAG 59.295 47.826 6.12 0.00 0.00 2.57
72 73 3.716431 ACCGGTGGAAGATAAAGGACTA 58.284 45.455 6.12 0.00 0.00 2.59
73 74 2.547990 ACCGGTGGAAGATAAAGGACT 58.452 47.619 6.12 0.00 0.00 3.85
74 75 3.007635 CAACCGGTGGAAGATAAAGGAC 58.992 50.000 8.52 0.00 0.00 3.85
75 76 2.640826 ACAACCGGTGGAAGATAAAGGA 59.359 45.455 18.24 0.00 0.00 3.36
76 77 3.067684 ACAACCGGTGGAAGATAAAGG 57.932 47.619 18.24 0.00 0.00 3.11
77 78 6.753107 AATTACAACCGGTGGAAGATAAAG 57.247 37.500 18.24 0.00 31.92 1.85
78 79 7.230913 TCAAAATTACAACCGGTGGAAGATAAA 59.769 33.333 18.24 0.19 31.92 1.40
79 80 6.715718 TCAAAATTACAACCGGTGGAAGATAA 59.284 34.615 18.24 3.91 31.92 1.75
80 81 6.239396 TCAAAATTACAACCGGTGGAAGATA 58.761 36.000 18.24 0.00 31.92 1.98
81 82 5.074115 TCAAAATTACAACCGGTGGAAGAT 58.926 37.500 18.24 3.24 31.92 2.40
82 83 4.462133 TCAAAATTACAACCGGTGGAAGA 58.538 39.130 18.24 0.57 31.92 2.87
83 84 4.794169 CTCAAAATTACAACCGGTGGAAG 58.206 43.478 18.24 5.46 31.92 3.46
84 85 3.004944 GCTCAAAATTACAACCGGTGGAA 59.995 43.478 18.24 10.15 33.37 3.53
85 86 2.554893 GCTCAAAATTACAACCGGTGGA 59.445 45.455 18.24 0.00 0.00 4.02
86 87 2.556622 AGCTCAAAATTACAACCGGTGG 59.443 45.455 8.52 8.06 0.00 4.61
87 88 3.365969 GGAGCTCAAAATTACAACCGGTG 60.366 47.826 17.19 4.99 0.00 4.94
88 89 2.817844 GGAGCTCAAAATTACAACCGGT 59.182 45.455 17.19 0.00 0.00 5.28
89 90 3.081804 AGGAGCTCAAAATTACAACCGG 58.918 45.455 17.19 0.00 0.00 5.28
90 91 4.766404 AAGGAGCTCAAAATTACAACCG 57.234 40.909 17.19 0.00 0.00 4.44
91 92 6.280643 ACAAAAGGAGCTCAAAATTACAACC 58.719 36.000 17.19 0.00 0.00 3.77
92 93 7.203218 AGACAAAAGGAGCTCAAAATTACAAC 58.797 34.615 17.19 0.00 0.00 3.32
93 94 7.346751 AGACAAAAGGAGCTCAAAATTACAA 57.653 32.000 17.19 0.00 0.00 2.41
94 95 6.959639 AGACAAAAGGAGCTCAAAATTACA 57.040 33.333 17.19 0.00 0.00 2.41
95 96 7.425606 TCAAGACAAAAGGAGCTCAAAATTAC 58.574 34.615 17.19 1.93 0.00 1.89
96 97 7.581213 TCAAGACAAAAGGAGCTCAAAATTA 57.419 32.000 17.19 0.00 0.00 1.40
97 98 6.469782 TCAAGACAAAAGGAGCTCAAAATT 57.530 33.333 17.19 1.70 0.00 1.82
98 99 6.453092 CATCAAGACAAAAGGAGCTCAAAAT 58.547 36.000 17.19 0.00 0.00 1.82
99 100 5.737063 GCATCAAGACAAAAGGAGCTCAAAA 60.737 40.000 17.19 0.00 0.00 2.44
100 101 4.261741 GCATCAAGACAAAAGGAGCTCAAA 60.262 41.667 17.19 0.00 0.00 2.69
101 102 3.254166 GCATCAAGACAAAAGGAGCTCAA 59.746 43.478 17.19 0.00 0.00 3.02
102 103 2.816087 GCATCAAGACAAAAGGAGCTCA 59.184 45.455 17.19 0.00 0.00 4.26
103 104 3.080319 AGCATCAAGACAAAAGGAGCTC 58.920 45.455 4.71 4.71 0.00 4.09
104 105 3.080319 GAGCATCAAGACAAAAGGAGCT 58.920 45.455 0.00 0.00 33.17 4.09
105 106 2.163211 GGAGCATCAAGACAAAAGGAGC 59.837 50.000 0.00 0.00 36.25 4.70
106 107 3.683802 AGGAGCATCAAGACAAAAGGAG 58.316 45.455 0.00 0.00 36.25 3.69
107 108 3.795688 AGGAGCATCAAGACAAAAGGA 57.204 42.857 0.00 0.00 36.25 3.36
108 109 4.861102 AAAGGAGCATCAAGACAAAAGG 57.139 40.909 0.00 0.00 36.25 3.11
109 110 4.446719 GCAAAAGGAGCATCAAGACAAAAG 59.553 41.667 0.00 0.00 36.25 2.27
110 111 4.370917 GCAAAAGGAGCATCAAGACAAAA 58.629 39.130 0.00 0.00 36.25 2.44
111 112 3.550639 CGCAAAAGGAGCATCAAGACAAA 60.551 43.478 0.00 0.00 36.25 2.83
112 113 2.030893 CGCAAAAGGAGCATCAAGACAA 60.031 45.455 0.00 0.00 36.25 3.18
113 114 1.536766 CGCAAAAGGAGCATCAAGACA 59.463 47.619 0.00 0.00 36.25 3.41
114 115 1.806542 TCGCAAAAGGAGCATCAAGAC 59.193 47.619 0.00 0.00 36.25 3.01
115 116 2.079158 CTCGCAAAAGGAGCATCAAGA 58.921 47.619 0.00 0.00 36.25 3.02
116 117 2.539346 CTCGCAAAAGGAGCATCAAG 57.461 50.000 0.00 0.00 36.25 3.02
123 124 4.184629 AGTATTACAGCTCGCAAAAGGAG 58.815 43.478 0.00 0.00 34.62 3.69
124 125 4.202245 AGTATTACAGCTCGCAAAAGGA 57.798 40.909 0.00 0.00 0.00 3.36
125 126 4.946784 AAGTATTACAGCTCGCAAAAGG 57.053 40.909 0.00 0.00 0.00 3.11
126 127 5.927030 TCAAAGTATTACAGCTCGCAAAAG 58.073 37.500 0.00 0.00 0.00 2.27
127 128 5.933187 TCAAAGTATTACAGCTCGCAAAA 57.067 34.783 0.00 0.00 0.00 2.44
128 129 5.933187 TTCAAAGTATTACAGCTCGCAAA 57.067 34.783 0.00 0.00 0.00 3.68
129 130 6.816640 AGTATTCAAAGTATTACAGCTCGCAA 59.183 34.615 0.00 0.00 0.00 4.85
130 131 6.255670 CAGTATTCAAAGTATTACAGCTCGCA 59.744 38.462 0.00 0.00 0.00 5.10
131 132 6.255887 ACAGTATTCAAAGTATTACAGCTCGC 59.744 38.462 0.00 0.00 0.00 5.03
132 133 7.757097 ACAGTATTCAAAGTATTACAGCTCG 57.243 36.000 0.00 0.00 0.00 5.03
133 134 9.760660 CAAACAGTATTCAAAGTATTACAGCTC 57.239 33.333 0.00 0.00 0.00 4.09
134 135 8.237267 GCAAACAGTATTCAAAGTATTACAGCT 58.763 33.333 0.00 0.00 0.00 4.24
135 136 8.237267 AGCAAACAGTATTCAAAGTATTACAGC 58.763 33.333 0.00 0.00 0.00 4.40
140 141 9.683069 CTCAAAGCAAACAGTATTCAAAGTATT 57.317 29.630 0.00 0.00 0.00 1.89
141 142 9.066892 TCTCAAAGCAAACAGTATTCAAAGTAT 57.933 29.630 0.00 0.00 0.00 2.12
142 143 8.342634 GTCTCAAAGCAAACAGTATTCAAAGTA 58.657 33.333 0.00 0.00 0.00 2.24
143 144 7.067494 AGTCTCAAAGCAAACAGTATTCAAAGT 59.933 33.333 0.00 0.00 0.00 2.66
144 145 7.420800 AGTCTCAAAGCAAACAGTATTCAAAG 58.579 34.615 0.00 0.00 0.00 2.77
145 146 7.333528 AGTCTCAAAGCAAACAGTATTCAAA 57.666 32.000 0.00 0.00 0.00 2.69
146 147 6.942532 AGTCTCAAAGCAAACAGTATTCAA 57.057 33.333 0.00 0.00 0.00 2.69
147 148 6.942532 AAGTCTCAAAGCAAACAGTATTCA 57.057 33.333 0.00 0.00 0.00 2.57
148 149 9.730420 TTAAAAGTCTCAAAGCAAACAGTATTC 57.270 29.630 0.00 0.00 0.00 1.75
157 158 9.801873 GCCATATTATTAAAAGTCTCAAAGCAA 57.198 29.630 0.00 0.00 0.00 3.91
158 159 9.189156 AGCCATATTATTAAAAGTCTCAAAGCA 57.811 29.630 0.00 0.00 0.00 3.91
159 160 9.455847 CAGCCATATTATTAAAAGTCTCAAAGC 57.544 33.333 0.00 0.00 0.00 3.51
160 161 9.455847 GCAGCCATATTATTAAAAGTCTCAAAG 57.544 33.333 0.00 0.00 0.00 2.77
161 162 8.965819 TGCAGCCATATTATTAAAAGTCTCAAA 58.034 29.630 0.00 0.00 0.00 2.69
162 163 8.518430 TGCAGCCATATTATTAAAAGTCTCAA 57.482 30.769 0.00 0.00 0.00 3.02
163 164 8.570488 CATGCAGCCATATTATTAAAAGTCTCA 58.430 33.333 0.00 0.00 0.00 3.27
164 165 7.540055 GCATGCAGCCATATTATTAAAAGTCTC 59.460 37.037 14.21 0.00 37.23 3.36
165 166 7.014518 TGCATGCAGCCATATTATTAAAAGTCT 59.985 33.333 18.46 0.00 44.83 3.24
166 167 7.147312 TGCATGCAGCCATATTATTAAAAGTC 58.853 34.615 18.46 0.00 44.83 3.01
167 168 7.053316 TGCATGCAGCCATATTATTAAAAGT 57.947 32.000 18.46 0.00 44.83 2.66
168 169 8.033038 AGATGCATGCAGCCATATTATTAAAAG 58.967 33.333 30.96 0.00 44.83 2.27
169 170 7.898918 AGATGCATGCAGCCATATTATTAAAA 58.101 30.769 30.96 0.00 44.83 1.52
170 171 7.470935 AGATGCATGCAGCCATATTATTAAA 57.529 32.000 30.96 0.00 44.83 1.52
171 172 7.470935 AAGATGCATGCAGCCATATTATTAA 57.529 32.000 30.96 0.00 44.83 1.40
172 173 7.177041 TGAAAGATGCATGCAGCCATATTATTA 59.823 33.333 30.96 6.66 44.83 0.98
173 174 5.995565 AAGATGCATGCAGCCATATTATT 57.004 34.783 30.96 14.81 44.83 1.40
174 175 5.479027 TGAAAGATGCATGCAGCCATATTAT 59.521 36.000 30.96 9.11 44.83 1.28
175 176 4.828387 TGAAAGATGCATGCAGCCATATTA 59.172 37.500 30.96 11.25 44.83 0.98
176 177 3.639561 TGAAAGATGCATGCAGCCATATT 59.360 39.130 30.96 20.40 44.83 1.28
177 178 3.227614 TGAAAGATGCATGCAGCCATAT 58.772 40.909 30.96 15.42 44.83 1.78
178 179 2.621526 CTGAAAGATGCATGCAGCCATA 59.378 45.455 30.96 14.76 38.55 2.74
179 180 1.409064 CTGAAAGATGCATGCAGCCAT 59.591 47.619 30.96 20.57 38.55 4.40
180 181 0.815095 CTGAAAGATGCATGCAGCCA 59.185 50.000 30.96 20.63 38.55 4.75
181 182 1.100510 TCTGAAAGATGCATGCAGCC 58.899 50.000 30.96 21.44 38.67 4.85
193 194 1.339824 ACCAGGCTCTGCATCTGAAAG 60.340 52.381 7.71 0.00 0.00 2.62
194 195 0.694771 ACCAGGCTCTGCATCTGAAA 59.305 50.000 7.71 0.00 0.00 2.69
195 196 0.035725 CACCAGGCTCTGCATCTGAA 60.036 55.000 7.71 0.00 0.00 3.02
196 197 1.600638 CACCAGGCTCTGCATCTGA 59.399 57.895 7.71 0.00 0.00 3.27
197 198 2.113433 GCACCAGGCTCTGCATCTG 61.113 63.158 8.50 0.00 40.25 2.90
198 199 2.271497 GCACCAGGCTCTGCATCT 59.729 61.111 8.50 0.00 40.25 2.90
199 200 2.045634 TGCACCAGGCTCTGCATC 60.046 61.111 11.48 0.00 45.15 3.91
200 201 2.360852 GTGCACCAGGCTCTGCAT 60.361 61.111 17.10 0.00 44.93 3.96
201 202 4.994471 CGTGCACCAGGCTCTGCA 62.994 66.667 12.15 11.48 45.15 4.41
206 207 4.892965 TTTGGCGTGCACCAGGCT 62.893 61.111 12.15 0.00 43.57 4.58
207 208 3.438017 TTTTTGGCGTGCACCAGGC 62.438 57.895 12.15 11.32 41.82 4.85
208 209 2.811101 TTTTTGGCGTGCACCAGG 59.189 55.556 12.15 0.00 41.82 4.45
227 228 8.419442 CGGTTTTACCTAAGATGTATCCTACTT 58.581 37.037 0.00 0.00 35.66 2.24
228 229 7.015001 CCGGTTTTACCTAAGATGTATCCTACT 59.985 40.741 0.00 0.00 35.66 2.57
229 230 7.150640 CCGGTTTTACCTAAGATGTATCCTAC 58.849 42.308 0.00 0.00 35.66 3.18
230 231 6.239402 GCCGGTTTTACCTAAGATGTATCCTA 60.239 42.308 1.90 0.00 35.66 2.94
231 232 5.454329 GCCGGTTTTACCTAAGATGTATCCT 60.454 44.000 1.90 0.00 35.66 3.24
232 233 4.753610 GCCGGTTTTACCTAAGATGTATCC 59.246 45.833 1.90 0.00 35.66 2.59
233 234 4.753610 GGCCGGTTTTACCTAAGATGTATC 59.246 45.833 1.90 0.00 35.66 2.24
239 240 0.620030 GGGGCCGGTTTTACCTAAGA 59.380 55.000 1.90 0.00 35.66 2.10
265 266 4.353777 TCTAATCTGTGTTCTACTGGCCT 58.646 43.478 3.32 0.00 0.00 5.19
266 267 4.737855 TCTAATCTGTGTTCTACTGGCC 57.262 45.455 0.00 0.00 0.00 5.36
322 325 3.204827 CCAGCAGGGAATTCGCCG 61.205 66.667 18.08 9.98 40.01 6.46
338 341 6.364976 GTGGTTTTTGTATATGAAGCAACACC 59.635 38.462 0.00 0.00 32.17 4.16
341 344 7.865385 TCAAGTGGTTTTTGTATATGAAGCAAC 59.135 33.333 0.00 0.00 32.17 4.17
376 379 1.990060 TGCTGTACCCTCTCCTGGC 60.990 63.158 0.00 0.00 0.00 4.85
427 441 1.603172 GGAGACGCGGTGGATTATGAG 60.603 57.143 12.47 0.00 0.00 2.90
546 561 3.215151 TGGAAGAGCGAGAGTAGTATGG 58.785 50.000 0.00 0.00 0.00 2.74
548 563 5.066764 GTCTTTGGAAGAGCGAGAGTAGTAT 59.933 44.000 0.00 0.00 38.41 2.12
552 567 3.057456 GTGTCTTTGGAAGAGCGAGAGTA 60.057 47.826 0.00 0.00 38.41 2.59
559 574 2.287248 GCTGTTGTGTCTTTGGAAGAGC 60.287 50.000 0.00 0.00 38.41 4.09
560 575 2.291741 GGCTGTTGTGTCTTTGGAAGAG 59.708 50.000 0.00 0.00 38.41 2.85
561 576 2.092429 AGGCTGTTGTGTCTTTGGAAGA 60.092 45.455 0.00 0.00 34.51 2.87
562 577 2.301346 AGGCTGTTGTGTCTTTGGAAG 58.699 47.619 0.00 0.00 0.00 3.46
571 586 2.614829 ACTACGAAAGGCTGTTGTGT 57.385 45.000 7.89 1.57 0.00 3.72
577 592 1.068474 CACGGAACTACGAAAGGCTG 58.932 55.000 0.00 0.00 37.61 4.85
584 599 3.242969 GCTGATGATACACGGAACTACGA 60.243 47.826 0.00 0.00 37.61 3.43
587 602 4.937201 ATGCTGATGATACACGGAACTA 57.063 40.909 0.00 0.00 0.00 2.24
592 607 5.473039 TCTTCATATGCTGATGATACACGG 58.527 41.667 0.00 0.00 35.77 4.94
614 629 5.591877 AGATATCTTGGTGGCTGACAAAATC 59.408 40.000 0.00 0.00 0.00 2.17
615 630 5.359009 CAGATATCTTGGTGGCTGACAAAAT 59.641 40.000 1.33 0.00 0.00 1.82
631 647 2.450500 ACCAGGAGGAGAGCAGATATCT 59.549 50.000 0.00 0.00 38.69 1.98
632 648 2.888212 ACCAGGAGGAGAGCAGATATC 58.112 52.381 0.00 0.00 38.69 1.63
633 649 3.501385 GGTACCAGGAGGAGAGCAGATAT 60.501 52.174 7.15 0.00 38.69 1.63
634 650 2.158445 GGTACCAGGAGGAGAGCAGATA 60.158 54.545 7.15 0.00 38.69 1.98
635 651 1.412361 GGTACCAGGAGGAGAGCAGAT 60.412 57.143 7.15 0.00 38.69 2.90
636 652 0.033011 GGTACCAGGAGGAGAGCAGA 60.033 60.000 7.15 0.00 38.69 4.26
637 653 0.324738 TGGTACCAGGAGGAGAGCAG 60.325 60.000 11.60 0.00 38.69 4.24
638 654 0.339859 ATGGTACCAGGAGGAGAGCA 59.660 55.000 21.41 0.00 38.69 4.26
639 655 1.044611 GATGGTACCAGGAGGAGAGC 58.955 60.000 21.41 0.00 38.69 4.09
640 656 2.035632 GTGATGGTACCAGGAGGAGAG 58.964 57.143 21.41 0.00 38.69 3.20
641 657 1.343075 GGTGATGGTACCAGGAGGAGA 60.343 57.143 21.41 0.00 40.54 3.71
642 658 1.123928 GGTGATGGTACCAGGAGGAG 58.876 60.000 21.41 0.00 40.54 3.69
643 659 0.415830 TGGTGATGGTACCAGGAGGA 59.584 55.000 21.41 1.03 45.46 3.71
717 733 4.213059 GCACAGGAAGTCTCTTTTCTCTTG 59.787 45.833 0.00 0.00 0.00 3.02
830 851 4.891756 CACATTCCTCATATCTTTTGGCCT 59.108 41.667 3.32 0.00 0.00 5.19
834 855 7.558161 TGCTACACATTCCTCATATCTTTTG 57.442 36.000 0.00 0.00 0.00 2.44
861 882 4.101790 CACGTGTGAATGGCCGGC 62.102 66.667 21.18 21.18 0.00 6.13
880 913 1.688884 AGAGCAAGGAGGAGGAGGC 60.689 63.158 0.00 0.00 0.00 4.70
901 935 4.613167 GCTCATCAGAGAACAGTTGCAAAG 60.613 45.833 0.00 0.00 44.98 2.77
1100 1137 7.481798 CAGATTAACAAAAGGAACTATTGACGC 59.518 37.037 0.00 0.00 38.49 5.19
1116 1153 7.114811 GCTTGAGCGAAAAATTCAGATTAACAA 59.885 33.333 0.00 0.00 0.00 2.83
1235 1272 0.874390 TTTGAACTGCGCCAGTCATC 59.126 50.000 4.18 4.97 44.62 2.92
1237 1274 1.785041 GCTTTGAACTGCGCCAGTCA 61.785 55.000 4.18 1.85 44.62 3.41
1240 1277 0.248990 TTTGCTTTGAACTGCGCCAG 60.249 50.000 4.18 4.99 37.52 4.85
1241 1278 0.248990 CTTTGCTTTGAACTGCGCCA 60.249 50.000 4.18 0.00 0.00 5.69
1242 1279 0.030638 TCTTTGCTTTGAACTGCGCC 59.969 50.000 4.18 0.00 0.00 6.53
1243 1280 1.518515 GTTCTTTGCTTTGAACTGCGC 59.481 47.619 0.00 0.00 39.36 6.09
1251 1288 5.036737 CACAACCAGTAGTTCTTTGCTTTG 58.963 41.667 0.00 0.00 36.18 2.77
1266 1303 1.009675 GAGCAACACGCACAACCAG 60.010 57.895 0.00 0.00 46.13 4.00
1294 1331 6.430925 CCTGAAATAATCAACAGTTGGACAGA 59.569 38.462 13.52 0.00 37.67 3.41
1298 1335 5.016173 CCCCTGAAATAATCAACAGTTGGA 58.984 41.667 13.52 0.96 37.67 3.53
1303 1340 5.116084 TCTCCCCCTGAAATAATCAACAG 57.884 43.478 0.00 0.00 37.67 3.16
1330 1367 2.140839 TAACCTCTTCCTCCTCGTCC 57.859 55.000 0.00 0.00 0.00 4.79
1364 1401 0.108041 GACGGGGCCGAGTTGATTAA 60.108 55.000 0.00 0.00 42.83 1.40
1390 1427 0.952010 TGTCGTCCTCATCGTCGTCA 60.952 55.000 0.00 0.00 0.00 4.35
1495 1532 2.558821 GCCATGTGCGCGTTGTAA 59.441 55.556 8.43 0.00 0.00 2.41
1753 1790 1.448717 GTCGAGCTCCTTCTTGGCC 60.449 63.158 8.47 0.00 35.26 5.36
2057 2094 9.347934 CAGAGTAATAGTAACAGAAACAGAGTG 57.652 37.037 0.00 0.00 0.00 3.51
2064 2101 9.555727 AACTTTGCAGAGTAATAGTAACAGAAA 57.444 29.630 10.74 0.00 0.00 2.52
2317 2357 4.225042 AGTGCATGTCATTAGGTTCCTACA 59.775 41.667 0.00 0.00 0.00 2.74
2323 2363 4.833478 AGAGAGTGCATGTCATTAGGTT 57.167 40.909 0.00 0.00 0.00 3.50
2333 2373 5.306532 AGCAATACAAAAGAGAGTGCATG 57.693 39.130 0.00 0.00 32.98 4.06
2474 2517 4.937620 TCCTGATATGAGCAAACTGTTCAC 59.062 41.667 0.00 0.00 40.32 3.18
2489 2532 9.240734 GGAAGAGAATTGCATTTATCCTGATAT 57.759 33.333 11.29 0.00 0.00 1.63
2666 2737 9.871238 GAGAAGTATGTCATGAAAAAGGTAGTA 57.129 33.333 0.00 0.00 0.00 1.82
2667 2738 7.824779 GGAGAAGTATGTCATGAAAAAGGTAGT 59.175 37.037 0.00 0.00 0.00 2.73
2668 2739 7.824289 TGGAGAAGTATGTCATGAAAAAGGTAG 59.176 37.037 0.00 0.00 0.00 3.18
2669 2740 7.685481 TGGAGAAGTATGTCATGAAAAAGGTA 58.315 34.615 0.00 0.00 0.00 3.08
2670 2741 6.542821 TGGAGAAGTATGTCATGAAAAAGGT 58.457 36.000 0.00 0.00 0.00 3.50
2671 2742 7.452880 TTGGAGAAGTATGTCATGAAAAAGG 57.547 36.000 0.00 0.00 0.00 3.11
2704 2775 8.319146 ACTCTGCATGATGATGATATGTCATAA 58.681 33.333 4.77 0.00 44.96 1.90
3300 3379 2.492088 GGATTCTTGGTCCCTTTTTCCG 59.508 50.000 0.00 0.00 0.00 4.30
3348 3427 1.996191 GACATCAGCTGGAACGAAGAC 59.004 52.381 15.13 0.00 0.00 3.01
3354 3433 2.370281 TCTTCGACATCAGCTGGAAC 57.630 50.000 15.13 2.62 0.00 3.62
3480 3559 1.227527 GCCACCACCAAACCTTTGC 60.228 57.895 0.00 0.00 36.86 3.68
3570 3649 1.707989 TCAGAATTAACTGTGGGGGCA 59.292 47.619 0.00 0.00 38.79 5.36
3930 4009 3.072476 CCAAAGAGGTGGTGTCCTTCTTA 59.928 47.826 0.00 0.00 38.02 2.10
4055 4134 2.441410 TGGCAGGATTTTTATGCGTGA 58.559 42.857 0.00 0.00 40.90 4.35
4057 4136 3.951775 TTTGGCAGGATTTTTATGCGT 57.048 38.095 0.00 0.00 40.90 5.24
4135 4214 8.249327 ACAATATTCGTCATAATGAGCTGATC 57.751 34.615 0.00 0.00 0.00 2.92
4229 4309 3.240134 TTGCTGCTCGGACCTCACC 62.240 63.158 0.00 0.00 0.00 4.02
4264 4344 4.379498 CAGTGTACAAATGCAACAACATCG 59.621 41.667 0.00 0.00 0.00 3.84
4345 4425 2.972625 TCATGTGCAGCCTAAGTACAC 58.027 47.619 0.00 0.00 34.50 2.90
4674 4756 5.233902 CACAAACATCTTGGAATTCGCAAAA 59.766 36.000 0.00 0.00 0.00 2.44
4700 4782 5.479124 TTCTTAGGGTAGACCAACACTTC 57.521 43.478 0.21 0.00 43.89 3.01
4705 4787 9.628500 AAATTATGATTCTTAGGGTAGACCAAC 57.372 33.333 0.21 0.00 43.89 3.77
4754 4836 0.035881 CTGCTCCACTCTGCCAGAAA 59.964 55.000 0.00 0.00 0.00 2.52
4782 4864 3.067601 TGTCTCTTGTACGAAGAAGTGCA 59.932 43.478 8.46 0.00 35.02 4.57
4842 4924 5.635278 TTCCAGAATCAGATAGCCAATCA 57.365 39.130 0.00 0.00 37.03 2.57
4860 4942 0.463620 GCACCTTGCCAACTTTTCCA 59.536 50.000 0.00 0.00 37.42 3.53
4892 4974 9.649167 GCCAACATAAGTAGTTTAGACTTTAGA 57.351 33.333 0.00 0.00 38.16 2.10
4893 4975 9.431887 TGCCAACATAAGTAGTTTAGACTTTAG 57.568 33.333 0.00 0.00 38.16 1.85
4894 4976 9.431887 CTGCCAACATAAGTAGTTTAGACTTTA 57.568 33.333 0.00 0.00 38.16 1.85
4895 4977 7.937394 ACTGCCAACATAAGTAGTTTAGACTTT 59.063 33.333 0.00 0.00 38.16 2.66
4896 4978 7.450903 ACTGCCAACATAAGTAGTTTAGACTT 58.549 34.615 0.00 0.00 40.27 3.01
4897 4979 7.005709 ACTGCCAACATAAGTAGTTTAGACT 57.994 36.000 0.00 0.00 39.97 3.24
4898 4980 7.097834 AGACTGCCAACATAAGTAGTTTAGAC 58.902 38.462 0.00 0.00 0.00 2.59
4903 4985 7.005709 AGTAAGACTGCCAACATAAGTAGTT 57.994 36.000 0.00 0.00 0.00 2.24
4953 5039 4.727507 ACCTGTACTACAGCTTCATGAG 57.272 45.455 10.36 0.00 44.63 2.90
4955 5041 4.327357 CGAAACCTGTACTACAGCTTCATG 59.673 45.833 19.41 7.66 44.63 3.07
4958 5044 4.167268 CTCGAAACCTGTACTACAGCTTC 58.833 47.826 10.36 12.60 44.63 3.86
4962 5048 4.454847 TCTGACTCGAAACCTGTACTACAG 59.545 45.833 9.02 9.02 45.53 2.74
4967 5053 6.561614 TCATATTCTGACTCGAAACCTGTAC 58.438 40.000 0.00 0.00 0.00 2.90
4968 5054 6.769134 TCATATTCTGACTCGAAACCTGTA 57.231 37.500 0.00 0.00 0.00 2.74
4970 5056 6.758416 TGATTCATATTCTGACTCGAAACCTG 59.242 38.462 0.00 0.00 36.58 4.00
4971 5057 6.878317 TGATTCATATTCTGACTCGAAACCT 58.122 36.000 0.00 0.00 36.58 3.50
4972 5058 7.492669 TCTTGATTCATATTCTGACTCGAAACC 59.507 37.037 0.00 0.00 36.58 3.27
4973 5059 8.412608 TCTTGATTCATATTCTGACTCGAAAC 57.587 34.615 0.00 0.00 36.58 2.78
4975 5061 9.605275 AAATCTTGATTCATATTCTGACTCGAA 57.395 29.630 0.00 0.00 36.58 3.71
4976 5062 9.605275 AAAATCTTGATTCATATTCTGACTCGA 57.395 29.630 0.00 0.00 36.58 4.04
5016 5102 5.101648 TGATCTGCAACCAACATATGAGA 57.898 39.130 10.38 0.00 0.00 3.27
5017 5103 5.823209 TTGATCTGCAACCAACATATGAG 57.177 39.130 10.38 1.23 0.00 2.90
5056 5142 2.565391 TCTCCATGTACTTCTTCGCCAA 59.435 45.455 0.00 0.00 0.00 4.52
5061 5147 3.769844 TGACCCTCTCCATGTACTTCTTC 59.230 47.826 0.00 0.00 0.00 2.87
5186 5272 7.093945 ACTGTTGAAATGTAAGTTTTGGACAGT 60.094 33.333 0.00 0.00 35.88 3.55
5187 5273 7.257722 ACTGTTGAAATGTAAGTTTTGGACAG 58.742 34.615 0.00 0.00 34.87 3.51
5188 5274 7.164230 ACTGTTGAAATGTAAGTTTTGGACA 57.836 32.000 0.00 0.00 0.00 4.02
5189 5275 9.180678 CATACTGTTGAAATGTAAGTTTTGGAC 57.819 33.333 0.00 0.00 0.00 4.02
5191 5277 8.967218 CACATACTGTTGAAATGTAAGTTTTGG 58.033 33.333 0.00 0.00 32.70 3.28
5192 5278 9.515020 ACACATACTGTTGAAATGTAAGTTTTG 57.485 29.630 0.00 0.00 32.70 2.44
5426 5513 1.094785 CCAACTAATTGTGCCCTCCG 58.905 55.000 0.00 0.00 33.60 4.63
5427 5514 0.817654 GCCAACTAATTGTGCCCTCC 59.182 55.000 0.00 0.00 33.60 4.30
5438 5525 8.961294 TTTGTACAGTTTAACTAGCCAACTAA 57.039 30.769 0.00 0.00 0.00 2.24
5557 5647 7.099764 TCAGCCAAACAAACAAACTTGATTAA 58.900 30.769 0.00 0.00 0.00 1.40
5558 5648 6.634805 TCAGCCAAACAAACAAACTTGATTA 58.365 32.000 0.00 0.00 0.00 1.75
5559 5649 5.486526 TCAGCCAAACAAACAAACTTGATT 58.513 33.333 0.00 0.00 0.00 2.57
5560 5650 5.083533 TCAGCCAAACAAACAAACTTGAT 57.916 34.783 0.00 0.00 0.00 2.57
5561 5651 4.527509 TCAGCCAAACAAACAAACTTGA 57.472 36.364 0.00 0.00 0.00 3.02
5576 5666 2.432444 CCGGTTACAGAATTTCAGCCA 58.568 47.619 0.00 0.00 0.00 4.75
5642 5732 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
5643 5733 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
5644 5734 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
5645 5735 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
5646 5736 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
5647 5737 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
5648 5738 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
5649 5739 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
5650 5740 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
5651 5741 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
5652 5742 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
5653 5743 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
5654 5744 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
5655 5745 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
5656 5746 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
5657 5747 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
5658 5748 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
5659 5749 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
5660 5750 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
5661 5751 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
5662 5752 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
5663 5753 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
5664 5754 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
5665 5755 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
5666 5756 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
5667 5757 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
5668 5758 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
5669 5759 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
5670 5760 7.028926 TCTCAAATCGATGACCTAGAACTAC 57.971 40.000 0.00 0.00 0.00 2.73
5671 5761 7.640597 TTCTCAAATCGATGACCTAGAACTA 57.359 36.000 0.00 0.00 0.00 2.24
5672 5762 6.531503 TTCTCAAATCGATGACCTAGAACT 57.468 37.500 0.00 0.00 0.00 3.01
5673 5763 7.778470 ATTTCTCAAATCGATGACCTAGAAC 57.222 36.000 0.00 0.00 0.00 3.01
5674 5764 9.884636 TTAATTTCTCAAATCGATGACCTAGAA 57.115 29.630 0.00 1.98 0.00 2.10
5675 5765 9.884636 TTTAATTTCTCAAATCGATGACCTAGA 57.115 29.630 0.00 0.00 0.00 2.43
5790 5880 9.886132 ACAGGTTGACGATTTAACTATCTAAAT 57.114 29.630 0.00 0.00 34.81 1.40
5793 5883 9.793252 GTTACAGGTTGACGATTTAACTATCTA 57.207 33.333 0.00 0.00 0.00 1.98
5794 5884 8.529476 AGTTACAGGTTGACGATTTAACTATCT 58.471 33.333 0.00 0.00 0.00 1.98
5795 5885 8.699283 AGTTACAGGTTGACGATTTAACTATC 57.301 34.615 0.00 0.00 0.00 2.08
5796 5886 9.578439 GTAGTTACAGGTTGACGATTTAACTAT 57.422 33.333 0.00 0.00 34.65 2.12
5797 5887 7.750458 CGTAGTTACAGGTTGACGATTTAACTA 59.250 37.037 0.00 0.00 32.16 2.24
5798 5888 6.583806 CGTAGTTACAGGTTGACGATTTAACT 59.416 38.462 0.00 0.00 33.85 2.24
5799 5889 6.668325 GCGTAGTTACAGGTTGACGATTTAAC 60.668 42.308 0.00 0.00 32.20 2.01
5800 5890 5.345741 GCGTAGTTACAGGTTGACGATTTAA 59.654 40.000 0.00 0.00 32.20 1.52
5801 5891 4.858692 GCGTAGTTACAGGTTGACGATTTA 59.141 41.667 0.00 0.00 32.20 1.40
5802 5892 3.676646 GCGTAGTTACAGGTTGACGATTT 59.323 43.478 0.00 0.00 32.20 2.17
5803 5893 3.248266 GCGTAGTTACAGGTTGACGATT 58.752 45.455 0.00 0.00 32.20 3.34
5804 5894 2.730090 CGCGTAGTTACAGGTTGACGAT 60.730 50.000 0.00 0.00 32.20 3.73
5805 5895 1.400113 CGCGTAGTTACAGGTTGACGA 60.400 52.381 0.00 0.00 32.20 4.20
5806 5896 0.979811 CGCGTAGTTACAGGTTGACG 59.020 55.000 0.00 0.00 0.00 4.35
5807 5897 2.336554 TCGCGTAGTTACAGGTTGAC 57.663 50.000 5.77 0.00 0.00 3.18
5808 5898 3.057386 TCATTCGCGTAGTTACAGGTTGA 60.057 43.478 5.77 0.00 0.00 3.18
5809 5899 3.060363 GTCATTCGCGTAGTTACAGGTTG 59.940 47.826 5.77 0.00 0.00 3.77
5810 5900 3.057033 AGTCATTCGCGTAGTTACAGGTT 60.057 43.478 5.77 0.00 0.00 3.50
5811 5901 2.490903 AGTCATTCGCGTAGTTACAGGT 59.509 45.455 5.77 0.00 0.00 4.00
5812 5902 3.146618 AGTCATTCGCGTAGTTACAGG 57.853 47.619 5.77 0.00 0.00 4.00
5813 5903 6.471198 TGAATAAGTCATTCGCGTAGTTACAG 59.529 38.462 5.77 0.00 45.25 2.74
5814 5904 6.324042 TGAATAAGTCATTCGCGTAGTTACA 58.676 36.000 5.77 0.00 45.25 2.41
5815 5905 6.801367 TGAATAAGTCATTCGCGTAGTTAC 57.199 37.500 5.77 0.00 45.25 2.50
5828 5918 3.315470 CCTCCGTCTCGATGAATAAGTCA 59.685 47.826 0.00 0.00 41.67 3.41
5829 5919 3.315749 ACCTCCGTCTCGATGAATAAGTC 59.684 47.826 0.00 0.00 0.00 3.01
5830 5920 3.288964 ACCTCCGTCTCGATGAATAAGT 58.711 45.455 0.00 0.00 0.00 2.24
5831 5921 3.992260 ACCTCCGTCTCGATGAATAAG 57.008 47.619 0.00 0.00 0.00 1.73
5832 5922 4.458397 ACTACCTCCGTCTCGATGAATAA 58.542 43.478 0.00 0.00 0.00 1.40
5833 5923 4.082665 ACTACCTCCGTCTCGATGAATA 57.917 45.455 0.00 0.00 0.00 1.75
5834 5924 2.933573 ACTACCTCCGTCTCGATGAAT 58.066 47.619 0.00 0.00 0.00 2.57
5835 5925 2.414994 ACTACCTCCGTCTCGATGAA 57.585 50.000 0.00 0.00 0.00 2.57
5836 5926 2.484417 GGTACTACCTCCGTCTCGATGA 60.484 54.545 0.00 0.00 34.73 2.92
5837 5927 1.872313 GGTACTACCTCCGTCTCGATG 59.128 57.143 0.00 0.00 34.73 3.84
5838 5928 2.252976 GGTACTACCTCCGTCTCGAT 57.747 55.000 0.00 0.00 34.73 3.59
5839 5929 3.768633 GGTACTACCTCCGTCTCGA 57.231 57.895 0.00 0.00 34.73 4.04
5849 5939 5.929058 AGTAGCCAAAACTAGGTACTACC 57.071 43.478 0.00 0.00 43.51 3.18
5850 5940 6.071165 TGGAAGTAGCCAAAACTAGGTACTAC 60.071 42.308 2.66 0.00 44.30 2.73
5851 5941 6.018469 TGGAAGTAGCCAAAACTAGGTACTA 58.982 40.000 2.66 0.00 44.30 1.82
5852 5942 4.842380 TGGAAGTAGCCAAAACTAGGTACT 59.158 41.667 0.00 0.00 46.36 2.73
5853 5943 5.156608 TGGAAGTAGCCAAAACTAGGTAC 57.843 43.478 0.00 0.00 37.26 3.34
5899 5989 0.251354 TGAAGACTGGAGCAGGCATC 59.749 55.000 0.00 0.00 42.99 3.91
5908 5998 3.733337 GAGTTTTGCTCTGAAGACTGGA 58.267 45.455 0.00 0.00 40.98 3.86
5909 5999 2.478134 CGAGTTTTGCTCTGAAGACTGG 59.522 50.000 0.00 0.00 41.98 4.00
5959 6049 3.631046 CATCCCCGGGAGCTAGCC 61.631 72.222 26.32 2.59 34.05 3.93
5960 6050 3.631046 CCATCCCCGGGAGCTAGC 61.631 72.222 26.32 6.62 34.05 3.42
5969 6059 3.566210 ATTACCCGCCCATCCCCG 61.566 66.667 0.00 0.00 0.00 5.73
5970 6060 2.115266 CATTACCCGCCCATCCCC 59.885 66.667 0.00 0.00 0.00 4.81
5971 6061 2.597510 GCATTACCCGCCCATCCC 60.598 66.667 0.00 0.00 0.00 3.85
5972 6062 0.109723 TAAGCATTACCCGCCCATCC 59.890 55.000 0.00 0.00 0.00 3.51
5973 6063 1.523758 CTAAGCATTACCCGCCCATC 58.476 55.000 0.00 0.00 0.00 3.51
5974 6064 0.110486 CCTAAGCATTACCCGCCCAT 59.890 55.000 0.00 0.00 0.00 4.00
5975 6065 1.529796 CCTAAGCATTACCCGCCCA 59.470 57.895 0.00 0.00 0.00 5.36
5976 6066 1.228154 CCCTAAGCATTACCCGCCC 60.228 63.158 0.00 0.00 0.00 6.13
5977 6067 0.534427 GACCCTAAGCATTACCCGCC 60.534 60.000 0.00 0.00 0.00 6.13
5978 6068 0.878961 CGACCCTAAGCATTACCCGC 60.879 60.000 0.00 0.00 0.00 6.13
5979 6069 0.748450 TCGACCCTAAGCATTACCCG 59.252 55.000 0.00 0.00 0.00 5.28
5980 6070 3.139077 CAATCGACCCTAAGCATTACCC 58.861 50.000 0.00 0.00 0.00 3.69
5981 6071 2.548480 GCAATCGACCCTAAGCATTACC 59.452 50.000 0.00 0.00 0.00 2.85
5982 6072 3.202906 TGCAATCGACCCTAAGCATTAC 58.797 45.455 0.00 0.00 0.00 1.89
5983 6073 3.552132 TGCAATCGACCCTAAGCATTA 57.448 42.857 0.00 0.00 0.00 1.90
5984 6074 2.418368 TGCAATCGACCCTAAGCATT 57.582 45.000 0.00 0.00 0.00 3.56
5985 6075 2.418368 TTGCAATCGACCCTAAGCAT 57.582 45.000 0.00 0.00 0.00 3.79
5986 6076 2.418368 ATTGCAATCGACCCTAAGCA 57.582 45.000 5.99 0.00 0.00 3.91
5987 6077 2.682856 TGAATTGCAATCGACCCTAAGC 59.317 45.455 13.38 0.00 0.00 3.09
5988 6078 4.034510 GTCTGAATTGCAATCGACCCTAAG 59.965 45.833 13.38 0.00 0.00 2.18
5989 6079 3.938963 GTCTGAATTGCAATCGACCCTAA 59.061 43.478 13.38 0.00 0.00 2.69
5990 6080 3.055458 TGTCTGAATTGCAATCGACCCTA 60.055 43.478 22.81 10.29 0.00 3.53
5991 6081 2.290260 TGTCTGAATTGCAATCGACCCT 60.290 45.455 22.81 6.43 0.00 4.34
5992 6082 2.083774 TGTCTGAATTGCAATCGACCC 58.916 47.619 22.81 10.78 0.00 4.46
5993 6083 3.829886 TTGTCTGAATTGCAATCGACC 57.170 42.857 22.81 11.62 0.00 4.79
5994 6084 4.795278 GGATTTGTCTGAATTGCAATCGAC 59.205 41.667 13.38 18.17 0.00 4.20
5995 6085 4.437255 CGGATTTGTCTGAATTGCAATCGA 60.437 41.667 13.38 7.14 0.00 3.59
5996 6086 3.787634 CGGATTTGTCTGAATTGCAATCG 59.212 43.478 13.38 3.40 0.00 3.34
5997 6087 4.107622 CCGGATTTGTCTGAATTGCAATC 58.892 43.478 13.38 7.13 0.00 2.67
5998 6088 3.763360 TCCGGATTTGTCTGAATTGCAAT 59.237 39.130 5.99 5.99 0.00 3.56
5999 6089 3.153130 TCCGGATTTGTCTGAATTGCAA 58.847 40.909 0.00 0.00 0.00 4.08
6000 6090 2.749076 CTCCGGATTTGTCTGAATTGCA 59.251 45.455 3.57 0.00 0.00 4.08
6001 6091 3.009723 TCTCCGGATTTGTCTGAATTGC 58.990 45.455 3.57 0.00 0.00 3.56
6002 6092 4.331168 GTCTCTCCGGATTTGTCTGAATTG 59.669 45.833 3.57 0.00 0.00 2.32
6067 6205 0.317519 CGTTGGTTTTCGGCTGTTCC 60.318 55.000 0.00 0.00 0.00 3.62
6155 6311 6.822170 ACGGAACCTAAATAACTTGGATTCTC 59.178 38.462 0.00 0.00 0.00 2.87
6167 6329 3.430374 GCTCAGAGCACGGAACCTAAATA 60.430 47.826 18.17 0.00 41.89 1.40
6169 6331 1.337823 GCTCAGAGCACGGAACCTAAA 60.338 52.381 18.17 0.00 41.89 1.85
6195 6357 1.984570 CACCTTCTCCCGGCTCTCA 60.985 63.158 0.00 0.00 0.00 3.27
6197 6359 2.685380 CCACCTTCTCCCGGCTCT 60.685 66.667 0.00 0.00 0.00 4.09
6249 6425 1.446272 GCGGTGGGTTCTCTTCTCG 60.446 63.158 0.00 0.00 0.00 4.04
6318 6494 2.244382 CGTCGTTTTTGAGCGCGT 59.756 55.556 8.43 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.