Multiple sequence alignment - TraesCS1A01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G414400 chr1A 100.000 3253 0 0 1 3253 573919812 573923064 0.000000e+00 6008.0
1 TraesCS1A01G414400 chr1A 83.121 1179 125 44 1636 2779 573818044 573819183 0.000000e+00 1007.0
2 TraesCS1A01G414400 chr1A 89.493 276 29 0 5 280 491309694 491309969 1.860000e-92 350.0
3 TraesCS1A01G414400 chr1A 83.598 189 12 7 434 608 573816733 573816916 3.360000e-35 159.0
4 TraesCS1A01G414400 chr1D 93.433 2619 113 25 321 2907 477478854 477481445 0.000000e+00 3829.0
5 TraesCS1A01G414400 chr1D 83.531 1178 119 42 1636 2779 477435592 477436728 0.000000e+00 1031.0
6 TraesCS1A01G414400 chr1D 92.079 303 22 2 2952 3253 477481447 477481748 3.000000e-115 425.0
7 TraesCS1A01G414400 chr1D 76.610 295 41 16 872 1158 477434726 477435000 1.570000e-28 137.0
8 TraesCS1A01G414400 chr1B 93.073 1689 76 25 895 2579 665060608 665062259 0.000000e+00 2433.0
9 TraesCS1A01G414400 chr1B 86.731 927 83 23 1570 2478 665049410 665050314 0.000000e+00 994.0
10 TraesCS1A01G414400 chr1B 91.429 595 41 6 2660 3253 665062257 665062842 0.000000e+00 808.0
11 TraesCS1A01G414400 chr1B 88.968 281 31 0 7 287 473235819 473236099 6.680000e-92 348.0
12 TraesCS1A01G414400 chr1B 88.163 245 21 3 2995 3231 665050308 665050552 5.310000e-73 285.0
13 TraesCS1A01G414400 chr1B 77.451 306 39 17 372 666 665060103 665060389 4.350000e-34 156.0
14 TraesCS1A01G414400 chr1B 78.226 248 35 11 912 1158 665048651 665048880 1.220000e-29 141.0
15 TraesCS1A01G414400 chr1B 80.214 187 21 10 436 614 665048066 665048244 3.410000e-25 126.0
16 TraesCS1A01G414400 chr1B 82.883 111 10 5 1473 1583 665061270 665061371 1.240000e-14 91.6
17 TraesCS1A01G414400 chr3A 96.540 289 8 1 1 287 711282834 711283122 8.170000e-131 477.0
18 TraesCS1A01G414400 chr3A 90.625 224 21 0 2005 2228 434069274 434069051 6.820000e-77 298.0
19 TraesCS1A01G414400 chr4A 96.337 273 10 0 18 290 162428009 162427737 1.780000e-122 449.0
20 TraesCS1A01G414400 chr4A 81.776 214 32 6 2002 2213 143252309 143252517 4.310000e-39 172.0
21 TraesCS1A01G414400 chr7D 93.286 283 19 0 5 287 408469037 408469319 5.020000e-113 418.0
22 TraesCS1A01G414400 chr2B 92.683 287 21 0 1 287 23565092 23565378 6.490000e-112 414.0
23 TraesCS1A01G414400 chr2B 86.552 290 39 0 1 290 64762342 64762053 1.460000e-83 320.0
24 TraesCS1A01G414400 chr2A 91.986 287 23 0 4 290 46101323 46101037 1.410000e-108 403.0
25 TraesCS1A01G414400 chr6D 90.493 284 27 0 7 290 20785397 20785114 3.060000e-100 375.0
26 TraesCS1A01G414400 chr3D 91.038 212 19 0 2002 2213 301414182 301414393 1.480000e-73 287.0
27 TraesCS1A01G414400 chr3B 88.839 224 25 0 2005 2228 419965937 419965714 3.200000e-70 276.0
28 TraesCS1A01G414400 chr3B 84.211 133 11 6 1846 1969 13365300 13365431 1.590000e-23 121.0
29 TraesCS1A01G414400 chr7A 76.585 205 29 11 2652 2852 84022951 84022762 9.610000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G414400 chr1A 573919812 573923064 3252 False 6008.00 6008 100.0000 1 3253 1 chr1A.!!$F2 3252
1 TraesCS1A01G414400 chr1A 573816733 573819183 2450 False 583.00 1007 83.3595 434 2779 2 chr1A.!!$F3 2345
2 TraesCS1A01G414400 chr1D 477478854 477481748 2894 False 2127.00 3829 92.7560 321 3253 2 chr1D.!!$F2 2932
3 TraesCS1A01G414400 chr1D 477434726 477436728 2002 False 584.00 1031 80.0705 872 2779 2 chr1D.!!$F1 1907
4 TraesCS1A01G414400 chr1B 665060103 665062842 2739 False 872.15 2433 86.2090 372 3253 4 chr1B.!!$F3 2881
5 TraesCS1A01G414400 chr1B 665048066 665050552 2486 False 386.50 994 83.3335 436 3231 4 chr1B.!!$F2 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.037605 CTTCCGGTGGTGGTACAGTC 60.038 60.0 0.0 0.0 41.8 3.51 F
146 147 0.109272 CGGCGACTGCTCTTTCAGTA 60.109 55.0 0.0 0.0 46.4 2.74 F
280 281 0.313672 GTTGCAGATCGGTTGGCAAA 59.686 50.0 0.0 0.0 46.5 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2565 1.185618 TACACCTCGAACTGCAGCCT 61.186 55.0 15.27 0.0 0.00 4.58 R
2225 2801 0.264955 GGAGGAGGGGGATGTAGTCA 59.735 60.0 0.00 0.0 0.00 3.41 R
2342 2928 5.122082 GGTTTGTTTTCCAATGTGGCATATG 59.878 40.0 0.00 0.0 37.47 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.898829 TTACTAGCGGCTTATCGTTACA 57.101 40.909 8.26 0.00 0.00 2.41
22 23 5.443185 TTACTAGCGGCTTATCGTTACAT 57.557 39.130 8.26 0.00 0.00 2.29
23 24 3.639538 ACTAGCGGCTTATCGTTACATG 58.360 45.455 8.26 0.00 0.00 3.21
24 25 2.596904 AGCGGCTTATCGTTACATGT 57.403 45.000 2.69 2.69 0.00 3.21
25 26 2.901249 AGCGGCTTATCGTTACATGTT 58.099 42.857 2.30 0.00 0.00 2.71
26 27 3.267483 AGCGGCTTATCGTTACATGTTT 58.733 40.909 2.30 0.00 0.00 2.83
27 28 4.435425 AGCGGCTTATCGTTACATGTTTA 58.565 39.130 2.30 0.00 0.00 2.01
28 29 4.871557 AGCGGCTTATCGTTACATGTTTAA 59.128 37.500 2.30 0.00 0.00 1.52
29 30 5.526111 AGCGGCTTATCGTTACATGTTTAAT 59.474 36.000 2.30 0.00 0.00 1.40
30 31 6.037830 AGCGGCTTATCGTTACATGTTTAATT 59.962 34.615 2.30 0.00 0.00 1.40
31 32 6.140108 GCGGCTTATCGTTACATGTTTAATTG 59.860 38.462 2.30 0.00 0.00 2.32
32 33 7.184106 CGGCTTATCGTTACATGTTTAATTGT 58.816 34.615 2.30 0.00 0.00 2.71
33 34 8.329583 CGGCTTATCGTTACATGTTTAATTGTA 58.670 33.333 2.30 0.00 0.00 2.41
34 35 9.991388 GGCTTATCGTTACATGTTTAATTGTAA 57.009 29.630 2.30 0.00 36.30 2.41
40 41 9.497030 TCGTTACATGTTTAATTGTAATGATGC 57.503 29.630 2.30 0.00 43.87 3.91
41 42 9.283420 CGTTACATGTTTAATTGTAATGATGCA 57.717 29.630 2.30 0.00 43.32 3.96
45 46 9.100554 ACATGTTTAATTGTAATGATGCATTGG 57.899 29.630 0.00 0.00 35.54 3.16
46 47 9.315525 CATGTTTAATTGTAATGATGCATTGGA 57.684 29.630 0.00 0.00 35.54 3.53
47 48 8.929827 TGTTTAATTGTAATGATGCATTGGAG 57.070 30.769 0.00 0.00 35.54 3.86
48 49 7.980662 TGTTTAATTGTAATGATGCATTGGAGG 59.019 33.333 0.00 0.00 35.54 4.30
49 50 4.595762 ATTGTAATGATGCATTGGAGGC 57.404 40.909 0.00 0.00 35.54 4.70
50 51 1.948834 TGTAATGATGCATTGGAGGCG 59.051 47.619 0.00 0.00 35.54 5.52
51 52 1.267806 GTAATGATGCATTGGAGGCGG 59.732 52.381 0.00 0.00 35.54 6.13
52 53 0.106569 AATGATGCATTGGAGGCGGA 60.107 50.000 0.00 0.00 32.39 5.54
53 54 0.536687 ATGATGCATTGGAGGCGGAG 60.537 55.000 0.00 0.00 0.00 4.63
54 55 1.146930 GATGCATTGGAGGCGGAGA 59.853 57.895 0.00 0.00 0.00 3.71
55 56 0.250640 GATGCATTGGAGGCGGAGAT 60.251 55.000 0.00 0.00 0.00 2.75
56 57 0.250640 ATGCATTGGAGGCGGAGATC 60.251 55.000 0.00 0.00 0.00 2.75
57 58 1.599240 GCATTGGAGGCGGAGATCC 60.599 63.158 0.00 0.00 35.77 3.36
58 59 1.832219 CATTGGAGGCGGAGATCCA 59.168 57.895 0.00 0.00 41.99 3.41
59 60 0.399454 CATTGGAGGCGGAGATCCAT 59.601 55.000 0.00 0.00 42.93 3.41
60 61 0.399454 ATTGGAGGCGGAGATCCATG 59.601 55.000 0.00 0.00 42.93 3.66
61 62 2.031768 GGAGGCGGAGATCCATGC 59.968 66.667 0.00 0.00 35.37 4.06
62 63 2.515071 GGAGGCGGAGATCCATGCT 61.515 63.158 0.00 0.00 35.37 3.79
63 64 1.188219 GGAGGCGGAGATCCATGCTA 61.188 60.000 0.00 0.00 35.37 3.49
64 65 0.901124 GAGGCGGAGATCCATGCTAT 59.099 55.000 0.00 0.00 35.14 2.97
65 66 0.901124 AGGCGGAGATCCATGCTATC 59.099 55.000 0.00 0.00 35.14 2.08
66 67 0.610174 GGCGGAGATCCATGCTATCA 59.390 55.000 8.48 0.00 35.14 2.15
67 68 1.209019 GGCGGAGATCCATGCTATCAT 59.791 52.381 8.48 0.00 35.14 2.45
69 70 2.277969 CGGAGATCCATGCTATCATGC 58.722 52.381 0.83 0.00 46.69 4.06
70 71 2.354403 CGGAGATCCATGCTATCATGCA 60.354 50.000 0.83 0.00 46.69 3.96
71 72 3.271729 GGAGATCCATGCTATCATGCAG 58.728 50.000 0.83 0.00 46.69 4.41
72 73 3.271729 GAGATCCATGCTATCATGCAGG 58.728 50.000 0.83 0.00 46.69 4.85
78 79 2.865119 TGCTATCATGCAGGGTATGG 57.135 50.000 0.00 0.00 38.12 2.74
79 80 1.271543 TGCTATCATGCAGGGTATGGC 60.272 52.381 0.00 0.00 38.12 4.40
80 81 1.952367 GCTATCATGCAGGGTATGGCC 60.952 57.143 0.00 0.00 0.00 5.36
81 82 1.632409 CTATCATGCAGGGTATGGCCT 59.368 52.381 3.32 0.00 37.43 5.19
82 83 0.855598 ATCATGCAGGGTATGGCCTT 59.144 50.000 3.32 0.00 37.43 4.35
83 84 0.106569 TCATGCAGGGTATGGCCTTG 60.107 55.000 3.32 0.00 46.12 3.61
84 85 1.111116 CATGCAGGGTATGGCCTTGG 61.111 60.000 3.32 0.00 43.82 3.61
85 86 2.834968 GCAGGGTATGGCCTTGGC 60.835 66.667 3.32 2.49 43.82 4.52
86 87 3.010144 CAGGGTATGGCCTTGGCT 58.990 61.111 11.71 0.00 40.34 4.75
87 88 1.994885 GCAGGGTATGGCCTTGGCTA 61.995 60.000 11.71 5.82 43.82 3.93
88 89 0.773644 CAGGGTATGGCCTTGGCTAT 59.226 55.000 14.64 14.64 40.34 2.97
89 90 1.145738 CAGGGTATGGCCTTGGCTATT 59.854 52.381 15.39 1.89 40.34 1.73
90 91 1.425448 AGGGTATGGCCTTGGCTATTC 59.575 52.381 15.39 10.45 37.43 1.75
91 92 1.144913 GGGTATGGCCTTGGCTATTCA 59.855 52.381 15.39 3.46 37.43 2.57
92 93 2.424234 GGGTATGGCCTTGGCTATTCAA 60.424 50.000 15.39 0.00 37.43 2.69
93 94 2.623416 GGTATGGCCTTGGCTATTCAAC 59.377 50.000 15.39 8.08 0.00 3.18
94 95 2.530460 ATGGCCTTGGCTATTCAACA 57.470 45.000 11.71 0.00 0.00 3.33
95 96 1.544724 TGGCCTTGGCTATTCAACAC 58.455 50.000 11.71 0.00 0.00 3.32
96 97 1.202989 TGGCCTTGGCTATTCAACACA 60.203 47.619 11.71 0.00 0.00 3.72
97 98 1.202348 GGCCTTGGCTATTCAACACAC 59.798 52.381 11.71 0.00 0.00 3.82
98 99 1.885887 GCCTTGGCTATTCAACACACA 59.114 47.619 4.11 0.00 0.00 3.72
99 100 2.095059 GCCTTGGCTATTCAACACACAG 60.095 50.000 4.11 0.00 0.00 3.66
100 101 3.149196 CCTTGGCTATTCAACACACAGT 58.851 45.455 0.00 0.00 0.00 3.55
101 102 3.569701 CCTTGGCTATTCAACACACAGTT 59.430 43.478 0.00 0.00 42.42 3.16
102 103 4.320494 CCTTGGCTATTCAACACACAGTTC 60.320 45.833 0.00 0.00 38.74 3.01
103 104 4.085357 TGGCTATTCAACACACAGTTCT 57.915 40.909 0.00 0.00 38.74 3.01
104 105 4.460263 TGGCTATTCAACACACAGTTCTT 58.540 39.130 0.00 0.00 38.74 2.52
105 106 4.515191 TGGCTATTCAACACACAGTTCTTC 59.485 41.667 0.00 0.00 38.74 2.87
106 107 4.083271 GGCTATTCAACACACAGTTCTTCC 60.083 45.833 0.00 0.00 38.74 3.46
107 108 4.377431 GCTATTCAACACACAGTTCTTCCG 60.377 45.833 0.00 0.00 38.74 4.30
108 109 1.948104 TCAACACACAGTTCTTCCGG 58.052 50.000 0.00 0.00 38.74 5.14
109 110 1.208535 TCAACACACAGTTCTTCCGGT 59.791 47.619 0.00 0.00 38.74 5.28
110 111 1.330521 CAACACACAGTTCTTCCGGTG 59.669 52.381 0.00 0.00 38.74 4.94
111 112 0.179056 ACACACAGTTCTTCCGGTGG 60.179 55.000 0.00 0.00 35.62 4.61
112 113 0.179056 CACACAGTTCTTCCGGTGGT 60.179 55.000 0.00 0.00 35.62 4.16
113 114 0.179056 ACACAGTTCTTCCGGTGGTG 60.179 55.000 0.00 3.52 35.62 4.17
114 115 0.884704 CACAGTTCTTCCGGTGGTGG 60.885 60.000 0.00 0.00 0.00 4.61
115 116 1.342672 ACAGTTCTTCCGGTGGTGGT 61.343 55.000 0.00 0.00 0.00 4.16
116 117 0.682852 CAGTTCTTCCGGTGGTGGTA 59.317 55.000 0.00 0.00 0.00 3.25
117 118 0.683412 AGTTCTTCCGGTGGTGGTAC 59.317 55.000 0.00 0.00 0.00 3.34
118 119 0.393820 GTTCTTCCGGTGGTGGTACA 59.606 55.000 0.00 0.00 0.00 2.90
119 120 0.682852 TTCTTCCGGTGGTGGTACAG 59.317 55.000 0.00 0.00 41.80 2.74
120 121 0.470456 TCTTCCGGTGGTGGTACAGT 60.470 55.000 0.00 0.00 41.80 3.55
121 122 0.037605 CTTCCGGTGGTGGTACAGTC 60.038 60.000 0.00 0.00 41.80 3.51
122 123 1.808531 TTCCGGTGGTGGTACAGTCG 61.809 60.000 0.00 0.00 41.80 4.18
123 124 2.260434 CGGTGGTGGTACAGTCGG 59.740 66.667 0.00 0.00 41.80 4.79
124 125 2.270257 CGGTGGTGGTACAGTCGGA 61.270 63.158 0.00 0.00 41.80 4.55
125 126 1.291272 GGTGGTGGTACAGTCGGAC 59.709 63.158 0.00 0.00 41.80 4.79
126 127 1.183676 GGTGGTGGTACAGTCGGACT 61.184 60.000 4.45 4.45 41.80 3.85
127 128 0.243095 GTGGTGGTACAGTCGGACTC 59.757 60.000 7.89 0.00 41.80 3.36
128 129 1.239296 TGGTGGTACAGTCGGACTCG 61.239 60.000 7.89 6.84 41.80 4.18
129 130 1.505353 GTGGTACAGTCGGACTCGG 59.495 63.158 7.89 0.47 41.80 4.63
130 131 2.338015 TGGTACAGTCGGACTCGGC 61.338 63.158 7.89 0.98 42.03 5.54
131 132 2.099831 GTACAGTCGGACTCGGCG 59.900 66.667 7.89 0.00 46.91 6.46
132 133 2.046988 TACAGTCGGACTCGGCGA 60.047 61.111 10.14 10.14 46.91 5.54
133 134 2.393768 TACAGTCGGACTCGGCGAC 61.394 63.158 4.99 0.00 46.91 5.19
134 135 2.793160 TACAGTCGGACTCGGCGACT 62.793 60.000 4.99 0.00 46.91 4.18
135 136 3.432588 AGTCGGACTCGGCGACTG 61.433 66.667 4.99 2.12 46.91 3.51
138 139 4.838486 CGGACTCGGCGACTGCTC 62.838 72.222 4.99 0.00 42.25 4.26
139 140 3.444805 GGACTCGGCGACTGCTCT 61.445 66.667 4.99 0.00 42.25 4.09
140 141 2.569134 GACTCGGCGACTGCTCTT 59.431 61.111 4.99 0.00 42.25 2.85
141 142 1.080434 GACTCGGCGACTGCTCTTT 60.080 57.895 4.99 0.00 42.25 2.52
142 143 1.073768 GACTCGGCGACTGCTCTTTC 61.074 60.000 4.99 0.00 42.25 2.62
143 144 1.080501 CTCGGCGACTGCTCTTTCA 60.081 57.895 4.99 0.00 42.25 2.69
144 145 1.075425 CTCGGCGACTGCTCTTTCAG 61.075 60.000 4.99 0.00 42.25 3.02
146 147 0.109272 CGGCGACTGCTCTTTCAGTA 60.109 55.000 0.00 0.00 46.40 2.74
147 148 1.469940 CGGCGACTGCTCTTTCAGTAT 60.470 52.381 0.00 0.00 46.40 2.12
148 149 2.622436 GGCGACTGCTCTTTCAGTATT 58.378 47.619 0.00 0.00 46.40 1.89
149 150 2.349886 GGCGACTGCTCTTTCAGTATTG 59.650 50.000 0.00 0.00 46.40 1.90
150 151 3.254060 GCGACTGCTCTTTCAGTATTGA 58.746 45.455 0.00 0.00 46.40 2.57
151 152 3.061429 GCGACTGCTCTTTCAGTATTGAC 59.939 47.826 0.00 0.00 46.40 3.18
152 153 3.301906 CGACTGCTCTTTCAGTATTGACG 59.698 47.826 0.00 0.00 46.40 4.35
153 154 4.486090 GACTGCTCTTTCAGTATTGACGA 58.514 43.478 0.00 0.00 46.40 4.20
154 155 4.883083 ACTGCTCTTTCAGTATTGACGAA 58.117 39.130 0.00 0.00 44.77 3.85
155 156 5.482908 ACTGCTCTTTCAGTATTGACGAAT 58.517 37.500 0.00 0.00 44.77 3.34
156 157 5.349817 ACTGCTCTTTCAGTATTGACGAATG 59.650 40.000 0.00 0.00 44.77 2.67
157 158 5.478407 TGCTCTTTCAGTATTGACGAATGA 58.522 37.500 0.00 0.00 31.71 2.57
158 159 6.108687 TGCTCTTTCAGTATTGACGAATGAT 58.891 36.000 0.00 0.00 31.71 2.45
159 160 6.036408 TGCTCTTTCAGTATTGACGAATGATG 59.964 38.462 0.00 0.00 31.71 3.07
160 161 6.256539 GCTCTTTCAGTATTGACGAATGATGA 59.743 38.462 0.00 0.00 31.71 2.92
161 162 7.042187 GCTCTTTCAGTATTGACGAATGATGAT 60.042 37.037 0.00 0.00 31.71 2.45
162 163 8.357796 TCTTTCAGTATTGACGAATGATGATC 57.642 34.615 0.00 0.00 31.71 2.92
163 164 8.200120 TCTTTCAGTATTGACGAATGATGATCT 58.800 33.333 0.00 0.00 31.71 2.75
164 165 7.936950 TTCAGTATTGACGAATGATGATCTC 57.063 36.000 0.00 0.00 31.71 2.75
165 166 7.042797 TCAGTATTGACGAATGATGATCTCA 57.957 36.000 0.00 0.00 38.53 3.27
166 167 7.664758 TCAGTATTGACGAATGATGATCTCAT 58.335 34.615 0.00 0.00 46.87 2.90
181 182 7.631717 ATGATCTCATCAAATCAGCATATGG 57.368 36.000 4.56 0.00 43.50 2.74
182 183 5.944007 TGATCTCATCAAATCAGCATATGGG 59.056 40.000 4.56 0.00 36.11 4.00
183 184 4.077108 TCTCATCAAATCAGCATATGGGC 58.923 43.478 4.56 0.00 0.00 5.36
184 185 3.824443 CTCATCAAATCAGCATATGGGCA 59.176 43.478 4.56 0.00 35.83 5.36
185 186 4.412843 TCATCAAATCAGCATATGGGCAT 58.587 39.130 4.56 0.00 35.83 4.40
186 187 4.836175 TCATCAAATCAGCATATGGGCATT 59.164 37.500 4.56 0.00 35.83 3.56
187 188 5.305902 TCATCAAATCAGCATATGGGCATTT 59.694 36.000 4.56 0.00 35.83 2.32
188 189 4.951254 TCAAATCAGCATATGGGCATTTG 58.049 39.130 4.56 5.01 37.97 2.32
189 190 4.650131 TCAAATCAGCATATGGGCATTTGA 59.350 37.500 4.56 7.03 40.68 2.69
190 191 5.305902 TCAAATCAGCATATGGGCATTTGAT 59.694 36.000 4.56 0.00 39.35 2.57
191 192 6.494146 TCAAATCAGCATATGGGCATTTGATA 59.506 34.615 4.56 0.00 39.35 2.15
192 193 5.909621 ATCAGCATATGGGCATTTGATAC 57.090 39.130 4.56 0.00 35.83 2.24
193 194 4.989277 TCAGCATATGGGCATTTGATACT 58.011 39.130 4.56 0.00 35.83 2.12
194 195 4.763279 TCAGCATATGGGCATTTGATACTG 59.237 41.667 4.56 0.00 35.83 2.74
195 196 4.082408 CAGCATATGGGCATTTGATACTGG 60.082 45.833 4.56 0.00 35.83 4.00
196 197 4.081406 GCATATGGGCATTTGATACTGGA 58.919 43.478 4.56 0.00 0.00 3.86
197 198 4.157289 GCATATGGGCATTTGATACTGGAG 59.843 45.833 4.56 0.00 0.00 3.86
198 199 5.563592 CATATGGGCATTTGATACTGGAGA 58.436 41.667 0.00 0.00 0.00 3.71
199 200 4.736611 ATGGGCATTTGATACTGGAGAT 57.263 40.909 0.00 0.00 0.00 2.75
200 201 4.524802 TGGGCATTTGATACTGGAGATT 57.475 40.909 0.00 0.00 0.00 2.40
201 202 5.645056 TGGGCATTTGATACTGGAGATTA 57.355 39.130 0.00 0.00 0.00 1.75
202 203 6.012337 TGGGCATTTGATACTGGAGATTAA 57.988 37.500 0.00 0.00 0.00 1.40
203 204 6.430864 TGGGCATTTGATACTGGAGATTAAA 58.569 36.000 0.00 0.00 0.00 1.52
204 205 6.547141 TGGGCATTTGATACTGGAGATTAAAG 59.453 38.462 0.00 0.00 0.00 1.85
205 206 6.772716 GGGCATTTGATACTGGAGATTAAAGA 59.227 38.462 0.00 0.00 0.00 2.52
206 207 7.255277 GGGCATTTGATACTGGAGATTAAAGAC 60.255 40.741 0.00 0.00 0.00 3.01
207 208 7.500559 GGCATTTGATACTGGAGATTAAAGACT 59.499 37.037 0.00 0.00 0.00 3.24
208 209 8.897752 GCATTTGATACTGGAGATTAAAGACTT 58.102 33.333 0.00 0.00 0.00 3.01
212 213 9.605275 TTGATACTGGAGATTAAAGACTTGATG 57.395 33.333 0.00 0.00 0.00 3.07
213 214 8.981659 TGATACTGGAGATTAAAGACTTGATGA 58.018 33.333 0.00 0.00 0.00 2.92
214 215 9.823647 GATACTGGAGATTAAAGACTTGATGAA 57.176 33.333 0.00 0.00 0.00 2.57
215 216 9.829507 ATACTGGAGATTAAAGACTTGATGAAG 57.170 33.333 0.00 0.00 35.07 3.02
216 217 7.108847 ACTGGAGATTAAAGACTTGATGAAGG 58.891 38.462 0.00 0.00 32.95 3.46
217 218 7.038017 ACTGGAGATTAAAGACTTGATGAAGGA 60.038 37.037 0.00 0.00 32.95 3.36
218 219 7.689299 TGGAGATTAAAGACTTGATGAAGGAA 58.311 34.615 0.00 0.00 32.95 3.36
219 220 8.163408 TGGAGATTAAAGACTTGATGAAGGAAA 58.837 33.333 0.00 0.00 32.95 3.13
220 221 8.672815 GGAGATTAAAGACTTGATGAAGGAAAG 58.327 37.037 0.00 0.00 32.95 2.62
221 222 8.572855 AGATTAAAGACTTGATGAAGGAAAGG 57.427 34.615 0.00 0.00 32.95 3.11
222 223 7.613411 AGATTAAAGACTTGATGAAGGAAAGGG 59.387 37.037 0.00 0.00 32.95 3.95
223 224 5.324832 AAAGACTTGATGAAGGAAAGGGA 57.675 39.130 0.00 0.00 32.95 4.20
224 225 4.566426 AGACTTGATGAAGGAAAGGGAG 57.434 45.455 0.00 0.00 32.95 4.30
225 226 3.913163 AGACTTGATGAAGGAAAGGGAGT 59.087 43.478 0.00 0.00 32.95 3.85
226 227 4.352298 AGACTTGATGAAGGAAAGGGAGTT 59.648 41.667 0.00 0.00 32.95 3.01
227 228 5.066913 ACTTGATGAAGGAAAGGGAGTTT 57.933 39.130 0.00 0.00 32.95 2.66
228 229 5.458595 ACTTGATGAAGGAAAGGGAGTTTT 58.541 37.500 0.00 0.00 32.95 2.43
229 230 5.899547 ACTTGATGAAGGAAAGGGAGTTTTT 59.100 36.000 0.00 0.00 32.95 1.94
230 231 7.066781 ACTTGATGAAGGAAAGGGAGTTTTTA 58.933 34.615 0.00 0.00 32.95 1.52
231 232 6.894339 TGATGAAGGAAAGGGAGTTTTTAC 57.106 37.500 0.00 0.00 0.00 2.01
232 233 5.773176 TGATGAAGGAAAGGGAGTTTTTACC 59.227 40.000 0.00 0.00 0.00 2.85
233 234 5.397553 TGAAGGAAAGGGAGTTTTTACCT 57.602 39.130 0.00 0.00 35.78 3.08
234 235 5.382616 TGAAGGAAAGGGAGTTTTTACCTC 58.617 41.667 0.00 0.00 32.29 3.85
235 236 4.017177 AGGAAAGGGAGTTTTTACCTCG 57.983 45.455 0.00 0.00 32.29 4.63
236 237 3.079578 GGAAAGGGAGTTTTTACCTCGG 58.920 50.000 0.00 0.00 32.29 4.63
237 238 3.244665 GGAAAGGGAGTTTTTACCTCGGA 60.245 47.826 0.00 0.00 32.29 4.55
238 239 4.392047 GAAAGGGAGTTTTTACCTCGGAA 58.608 43.478 0.00 0.00 32.29 4.30
239 240 4.442401 AAGGGAGTTTTTACCTCGGAAA 57.558 40.909 0.00 0.00 32.29 3.13
240 241 4.652679 AGGGAGTTTTTACCTCGGAAAT 57.347 40.909 0.00 0.00 0.00 2.17
241 242 4.994282 AGGGAGTTTTTACCTCGGAAATT 58.006 39.130 0.00 0.00 0.00 1.82
242 243 6.130692 AGGGAGTTTTTACCTCGGAAATTA 57.869 37.500 0.00 0.00 0.00 1.40
243 244 5.942236 AGGGAGTTTTTACCTCGGAAATTAC 59.058 40.000 0.00 0.00 0.00 1.89
244 245 5.706833 GGGAGTTTTTACCTCGGAAATTACA 59.293 40.000 0.00 0.00 0.00 2.41
245 246 6.376299 GGGAGTTTTTACCTCGGAAATTACAT 59.624 38.462 0.00 0.00 0.00 2.29
246 247 7.414873 GGGAGTTTTTACCTCGGAAATTACATC 60.415 40.741 0.00 0.00 0.00 3.06
247 248 7.068692 AGTTTTTACCTCGGAAATTACATCG 57.931 36.000 0.00 0.00 0.00 3.84
248 249 6.652062 AGTTTTTACCTCGGAAATTACATCGT 59.348 34.615 0.00 0.00 0.00 3.73
249 250 7.818930 AGTTTTTACCTCGGAAATTACATCGTA 59.181 33.333 0.00 0.00 0.00 3.43
250 251 7.760131 TTTTACCTCGGAAATTACATCGTAG 57.240 36.000 0.00 0.00 0.00 3.51
251 252 4.996788 ACCTCGGAAATTACATCGTAGT 57.003 40.909 0.00 0.00 0.00 2.73
252 253 4.929781 ACCTCGGAAATTACATCGTAGTC 58.070 43.478 0.00 0.00 0.00 2.59
253 254 4.400251 ACCTCGGAAATTACATCGTAGTCA 59.600 41.667 0.00 0.00 0.00 3.41
254 255 4.976731 CCTCGGAAATTACATCGTAGTCAG 59.023 45.833 0.00 0.00 0.00 3.51
255 256 5.220989 CCTCGGAAATTACATCGTAGTCAGA 60.221 44.000 0.00 0.00 0.00 3.27
256 257 6.198650 TCGGAAATTACATCGTAGTCAGAA 57.801 37.500 0.00 0.00 0.00 3.02
257 258 6.802608 TCGGAAATTACATCGTAGTCAGAAT 58.197 36.000 0.00 0.00 0.00 2.40
258 259 7.933396 TCGGAAATTACATCGTAGTCAGAATA 58.067 34.615 0.00 0.00 0.00 1.75
259 260 8.074370 TCGGAAATTACATCGTAGTCAGAATAG 58.926 37.037 0.00 0.00 0.00 1.73
260 261 7.861372 CGGAAATTACATCGTAGTCAGAATAGT 59.139 37.037 0.00 0.00 0.00 2.12
261 262 8.969267 GGAAATTACATCGTAGTCAGAATAGTG 58.031 37.037 0.00 0.00 0.00 2.74
262 263 9.517609 GAAATTACATCGTAGTCAGAATAGTGT 57.482 33.333 0.00 0.00 0.00 3.55
263 264 9.871238 AAATTACATCGTAGTCAGAATAGTGTT 57.129 29.630 0.00 0.00 0.00 3.32
264 265 8.858003 ATTACATCGTAGTCAGAATAGTGTTG 57.142 34.615 0.00 0.00 0.00 3.33
265 266 5.103000 ACATCGTAGTCAGAATAGTGTTGC 58.897 41.667 0.00 0.00 0.00 4.17
266 267 4.776795 TCGTAGTCAGAATAGTGTTGCA 57.223 40.909 0.00 0.00 0.00 4.08
267 268 4.733850 TCGTAGTCAGAATAGTGTTGCAG 58.266 43.478 0.00 0.00 0.00 4.41
268 269 4.457949 TCGTAGTCAGAATAGTGTTGCAGA 59.542 41.667 0.00 0.00 0.00 4.26
269 270 5.125578 TCGTAGTCAGAATAGTGTTGCAGAT 59.874 40.000 0.00 0.00 0.00 2.90
270 271 5.457148 CGTAGTCAGAATAGTGTTGCAGATC 59.543 44.000 0.00 0.00 0.00 2.75
271 272 4.428209 AGTCAGAATAGTGTTGCAGATCG 58.572 43.478 0.00 0.00 0.00 3.69
272 273 3.553511 GTCAGAATAGTGTTGCAGATCGG 59.446 47.826 0.00 0.00 0.00 4.18
273 274 3.195610 TCAGAATAGTGTTGCAGATCGGT 59.804 43.478 0.00 0.00 0.00 4.69
274 275 3.935203 CAGAATAGTGTTGCAGATCGGTT 59.065 43.478 0.00 0.00 0.00 4.44
275 276 3.935203 AGAATAGTGTTGCAGATCGGTTG 59.065 43.478 0.00 0.00 0.00 3.77
276 277 2.093306 TAGTGTTGCAGATCGGTTGG 57.907 50.000 0.00 0.00 0.00 3.77
277 278 1.210155 GTGTTGCAGATCGGTTGGC 59.790 57.895 0.00 0.00 0.00 4.52
278 279 1.228094 TGTTGCAGATCGGTTGGCA 60.228 52.632 0.00 0.00 0.00 4.92
279 280 0.821301 TGTTGCAGATCGGTTGGCAA 60.821 50.000 0.00 0.00 43.32 4.52
280 281 0.313672 GTTGCAGATCGGTTGGCAAA 59.686 50.000 0.00 0.00 46.50 3.68
281 282 0.313672 TTGCAGATCGGTTGGCAAAC 59.686 50.000 4.86 4.86 42.66 2.93
282 283 0.537143 TGCAGATCGGTTGGCAAACT 60.537 50.000 14.22 0.00 36.48 2.66
283 284 1.271108 TGCAGATCGGTTGGCAAACTA 60.271 47.619 14.22 2.14 36.48 2.24
284 285 2.017049 GCAGATCGGTTGGCAAACTAT 58.983 47.619 14.22 7.97 36.48 2.12
285 286 3.202906 GCAGATCGGTTGGCAAACTATA 58.797 45.455 14.22 0.00 36.48 1.31
286 287 3.248602 GCAGATCGGTTGGCAAACTATAG 59.751 47.826 14.22 5.63 36.48 1.31
287 288 4.442706 CAGATCGGTTGGCAAACTATAGT 58.557 43.478 14.22 0.00 36.48 2.12
288 289 4.508124 CAGATCGGTTGGCAAACTATAGTC 59.492 45.833 14.22 4.20 36.48 2.59
289 290 2.883574 TCGGTTGGCAAACTATAGTCG 58.116 47.619 14.22 3.01 36.48 4.18
290 291 1.931172 CGGTTGGCAAACTATAGTCGG 59.069 52.381 14.22 2.67 36.48 4.79
291 292 2.675889 CGGTTGGCAAACTATAGTCGGT 60.676 50.000 14.22 0.00 36.48 4.69
292 293 3.340928 GGTTGGCAAACTATAGTCGGTT 58.659 45.455 8.31 0.00 36.48 4.44
293 294 3.126343 GGTTGGCAAACTATAGTCGGTTG 59.874 47.826 8.31 8.50 36.48 3.77
294 295 2.980568 TGGCAAACTATAGTCGGTTGG 58.019 47.619 5.70 0.00 0.00 3.77
295 296 1.669265 GGCAAACTATAGTCGGTTGGC 59.331 52.381 20.20 20.20 40.50 4.52
296 297 2.352388 GCAAACTATAGTCGGTTGGCA 58.648 47.619 5.70 0.00 40.80 4.92
297 298 2.745281 GCAAACTATAGTCGGTTGGCAA 59.255 45.455 5.70 0.00 40.80 4.52
298 299 3.189702 GCAAACTATAGTCGGTTGGCAAA 59.810 43.478 5.70 0.00 40.80 3.68
299 300 4.719040 CAAACTATAGTCGGTTGGCAAAC 58.281 43.478 4.86 4.86 35.40 2.93
300 301 3.975168 ACTATAGTCGGTTGGCAAACT 57.025 42.857 14.22 10.79 36.48 2.66
301 302 5.410355 AACTATAGTCGGTTGGCAAACTA 57.590 39.130 14.22 12.67 36.48 2.24
302 303 5.609533 ACTATAGTCGGTTGGCAAACTAT 57.390 39.130 20.75 20.75 38.26 2.12
303 304 6.720112 ACTATAGTCGGTTGGCAAACTATA 57.280 37.500 20.76 20.76 36.57 1.31
305 306 2.629051 AGTCGGTTGGCAAACTATAGC 58.371 47.619 14.22 0.00 36.48 2.97
313 314 2.596904 GCAAACTATAGCCTCACCGA 57.403 50.000 0.00 0.00 0.00 4.69
314 315 2.474816 GCAAACTATAGCCTCACCGAG 58.525 52.381 0.00 0.00 0.00 4.63
315 316 2.100916 GCAAACTATAGCCTCACCGAGA 59.899 50.000 0.00 0.00 0.00 4.04
316 317 3.797184 GCAAACTATAGCCTCACCGAGAG 60.797 52.174 0.00 0.00 44.31 3.20
576 615 2.126307 CGACTCGCAGGTCAGGTG 60.126 66.667 6.82 0.00 36.12 4.00
579 618 2.433838 CTCGCAGGTCAGGTGCAG 60.434 66.667 0.00 0.00 41.26 4.41
581 620 2.740055 CGCAGGTCAGGTGCAGTC 60.740 66.667 0.00 0.00 41.26 3.51
584 623 3.314331 AGGTCAGGTGCAGTCCGG 61.314 66.667 0.00 0.00 0.00 5.14
619 661 1.071239 CGGCTGCTTCGATCAAATACG 60.071 52.381 0.00 0.00 0.00 3.06
620 662 1.933853 GGCTGCTTCGATCAAATACGT 59.066 47.619 0.00 0.00 0.00 3.57
621 663 3.120792 GGCTGCTTCGATCAAATACGTA 58.879 45.455 0.00 0.00 0.00 3.57
671 732 0.517132 CAGTTGCGTTCGCTTGATCG 60.517 55.000 17.63 0.00 37.76 3.69
692 757 1.000618 GAGGTCTCCGTCCTTCGTTTT 59.999 52.381 0.00 0.00 35.20 2.43
700 765 1.235724 GTCCTTCGTTTTCTGGGTGG 58.764 55.000 0.00 0.00 0.00 4.61
713 781 2.359850 GGTGGGCATTGCGAGTGA 60.360 61.111 1.91 0.00 0.00 3.41
735 856 2.395367 TTCCTTTTTGTTCGCCGCCG 62.395 55.000 0.00 0.00 0.00 6.46
767 889 1.136872 TTCGTTGCGTTTGTTGCTGC 61.137 50.000 0.00 0.00 0.00 5.25
785 917 1.211818 GCCGATGCGTCTGAGATCAC 61.212 60.000 4.05 0.00 0.00 3.06
883 1084 1.593479 GGGCGGTTACGGATGCTAC 60.593 63.158 0.00 0.00 41.36 3.58
1224 1761 4.400251 ACCCCCTGGTCCTCCTCG 62.400 72.222 0.00 0.00 43.06 4.63
1230 1767 3.670629 CTGGTCCTCCTCGGCCTCT 62.671 68.421 0.00 0.00 32.24 3.69
1423 1963 2.280524 CCAACAACGTCCTCGCCA 60.281 61.111 0.00 0.00 41.18 5.69
1810 2374 1.307647 CCCAACCCCTCCATTCCTG 59.692 63.158 0.00 0.00 0.00 3.86
1812 2376 1.383799 CAACCCCTCCATTCCTGCA 59.616 57.895 0.00 0.00 0.00 4.41
1815 2379 1.380380 CCCCTCCATTCCTGCAACC 60.380 63.158 0.00 0.00 0.00 3.77
1849 2413 0.697658 TGTGCCAATCCAGTCCATGA 59.302 50.000 0.00 0.00 0.00 3.07
2225 2801 3.402681 CACTCCATCACCCCCGCT 61.403 66.667 0.00 0.00 0.00 5.52
2342 2928 6.239915 CCTTCCTCCCCCTTCATAAACTATAC 60.240 46.154 0.00 0.00 0.00 1.47
2462 3050 3.107402 AGAGAGTTAGGACATGCAGGA 57.893 47.619 4.84 0.00 0.00 3.86
2591 3192 7.849322 TCTTACATGGTCTGTTATATAGCCA 57.151 36.000 0.00 0.00 39.39 4.75
2663 3264 3.965379 TTATGGACGTAGCCTTGTCAA 57.035 42.857 0.00 0.00 36.83 3.18
2865 3466 0.701731 TTCTGTGGGTTACATGGGGG 59.298 55.000 0.00 0.00 38.92 5.40
2897 3498 3.431486 GGATTCTGGATCATCGGATAGGC 60.431 52.174 0.00 0.00 36.43 3.93
2898 3499 1.561643 TCTGGATCATCGGATAGGCC 58.438 55.000 0.00 0.00 32.67 5.19
2911 3512 7.336679 TCATCGGATAGGCCAATTTATATGTTG 59.663 37.037 5.01 0.00 35.94 3.33
2936 3537 4.591498 GGGGGTTCTTTCTTACATGGTTTT 59.409 41.667 0.00 0.00 0.00 2.43
2937 3538 5.510690 GGGGGTTCTTTCTTACATGGTTTTG 60.511 44.000 0.00 0.00 0.00 2.44
2938 3539 4.988540 GGGTTCTTTCTTACATGGTTTTGC 59.011 41.667 0.00 0.00 0.00 3.68
2972 3573 3.556775 TGGTTACAGTTACACGAACTTGC 59.443 43.478 0.00 0.00 46.79 4.01
2978 3579 3.059597 CAGTTACACGAACTTGCTCCTTG 60.060 47.826 0.00 0.00 46.79 3.61
2980 3581 0.180406 ACACGAACTTGCTCCTTGGT 59.820 50.000 0.00 0.00 0.00 3.67
2981 3582 0.868406 CACGAACTTGCTCCTTGGTC 59.132 55.000 0.00 0.00 0.00 4.02
2984 3585 0.884704 GAACTTGCTCCTTGGTCGCA 60.885 55.000 3.21 3.21 0.00 5.10
3001 3602 5.123820 TGGTCGCATTTTGAGAGGAAATTAG 59.876 40.000 0.00 0.00 0.00 1.73
3002 3603 5.123979 GGTCGCATTTTGAGAGGAAATTAGT 59.876 40.000 0.00 0.00 0.00 2.24
3010 3611 5.401531 TGAGAGGAAATTAGTTGCGTAGT 57.598 39.130 0.00 0.00 31.66 2.73
3012 3613 5.148651 AGAGGAAATTAGTTGCGTAGTGT 57.851 39.130 0.00 0.00 31.66 3.55
3031 3632 9.784680 CGTAGTGTTGTAACTAAATCTGAGTAT 57.215 33.333 0.00 0.00 34.50 2.12
3080 3681 5.192522 TCTTCTGGAAGGAATTTCAGGCTAT 59.807 40.000 10.01 0.00 38.88 2.97
3129 3737 7.067496 TCTAGACAGTTGGAGAAATGAGTTT 57.933 36.000 0.00 0.00 31.48 2.66
3168 3776 5.557576 AAGGAGCATGTCAAGCATAGATA 57.442 39.130 2.46 0.00 35.74 1.98
3170 3778 4.592351 AGGAGCATGTCAAGCATAGATACT 59.408 41.667 2.46 0.00 35.74 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.898829 TGTAACGATAAGCCGCTAGTAA 57.101 40.909 0.00 0.00 0.00 2.24
1 2 4.276678 ACATGTAACGATAAGCCGCTAGTA 59.723 41.667 0.00 0.00 0.00 1.82
2 3 3.067742 ACATGTAACGATAAGCCGCTAGT 59.932 43.478 0.00 0.00 0.00 2.57
3 4 3.639538 ACATGTAACGATAAGCCGCTAG 58.360 45.455 0.00 0.00 0.00 3.42
4 5 3.720949 ACATGTAACGATAAGCCGCTA 57.279 42.857 0.00 0.00 0.00 4.26
5 6 2.596904 ACATGTAACGATAAGCCGCT 57.403 45.000 0.00 0.00 0.00 5.52
6 7 3.668596 AAACATGTAACGATAAGCCGC 57.331 42.857 0.00 0.00 0.00 6.53
7 8 7.184106 ACAATTAAACATGTAACGATAAGCCG 58.816 34.615 0.00 0.00 0.00 5.52
8 9 9.991388 TTACAATTAAACATGTAACGATAAGCC 57.009 29.630 0.00 0.00 37.16 4.35
14 15 9.497030 GCATCATTACAATTAAACATGTAACGA 57.503 29.630 0.00 10.34 42.81 3.85
15 16 9.283420 TGCATCATTACAATTAAACATGTAACG 57.717 29.630 0.00 6.50 42.81 3.18
19 20 9.100554 CCAATGCATCATTACAATTAAACATGT 57.899 29.630 0.00 0.00 32.35 3.21
20 21 9.315525 TCCAATGCATCATTACAATTAAACATG 57.684 29.630 0.00 0.00 32.35 3.21
21 22 9.537192 CTCCAATGCATCATTACAATTAAACAT 57.463 29.630 0.00 0.00 32.35 2.71
22 23 7.980662 CCTCCAATGCATCATTACAATTAAACA 59.019 33.333 0.00 0.00 32.35 2.83
23 24 7.042523 GCCTCCAATGCATCATTACAATTAAAC 60.043 37.037 0.00 0.00 32.35 2.01
24 25 6.985645 GCCTCCAATGCATCATTACAATTAAA 59.014 34.615 0.00 0.00 32.35 1.52
25 26 6.514947 GCCTCCAATGCATCATTACAATTAA 58.485 36.000 0.00 0.00 32.35 1.40
26 27 5.278414 CGCCTCCAATGCATCATTACAATTA 60.278 40.000 0.00 0.00 32.35 1.40
27 28 4.500205 CGCCTCCAATGCATCATTACAATT 60.500 41.667 0.00 0.00 32.35 2.32
28 29 3.005050 CGCCTCCAATGCATCATTACAAT 59.995 43.478 0.00 0.00 32.35 2.71
29 30 2.358582 CGCCTCCAATGCATCATTACAA 59.641 45.455 0.00 0.00 32.35 2.41
30 31 1.948834 CGCCTCCAATGCATCATTACA 59.051 47.619 0.00 0.00 32.35 2.41
31 32 1.267806 CCGCCTCCAATGCATCATTAC 59.732 52.381 0.00 0.00 32.35 1.89
32 33 1.142667 TCCGCCTCCAATGCATCATTA 59.857 47.619 0.00 0.00 32.35 1.90
33 34 0.106569 TCCGCCTCCAATGCATCATT 60.107 50.000 0.00 0.00 34.04 2.57
34 35 0.536687 CTCCGCCTCCAATGCATCAT 60.537 55.000 0.00 0.00 0.00 2.45
35 36 1.153107 CTCCGCCTCCAATGCATCA 60.153 57.895 0.00 0.00 0.00 3.07
36 37 0.250640 ATCTCCGCCTCCAATGCATC 60.251 55.000 0.00 0.00 0.00 3.91
37 38 0.250640 GATCTCCGCCTCCAATGCAT 60.251 55.000 0.00 0.00 0.00 3.96
38 39 1.146930 GATCTCCGCCTCCAATGCA 59.853 57.895 0.00 0.00 0.00 3.96
39 40 1.599240 GGATCTCCGCCTCCAATGC 60.599 63.158 0.00 0.00 0.00 3.56
40 41 0.399454 ATGGATCTCCGCCTCCAATG 59.601 55.000 0.00 0.00 44.41 2.82
41 42 0.399454 CATGGATCTCCGCCTCCAAT 59.601 55.000 0.00 0.00 44.41 3.16
42 43 1.832219 CATGGATCTCCGCCTCCAA 59.168 57.895 0.00 0.00 44.41 3.53
43 44 2.811514 GCATGGATCTCCGCCTCCA 61.812 63.158 0.00 0.00 45.27 3.86
44 45 1.188219 TAGCATGGATCTCCGCCTCC 61.188 60.000 0.00 0.00 39.43 4.30
45 46 0.901124 ATAGCATGGATCTCCGCCTC 59.099 55.000 0.00 0.00 39.43 4.70
46 47 0.901124 GATAGCATGGATCTCCGCCT 59.099 55.000 0.00 0.00 39.43 5.52
47 48 0.610174 TGATAGCATGGATCTCCGCC 59.390 55.000 0.00 0.00 39.43 6.13
48 49 2.277969 CATGATAGCATGGATCTCCGC 58.722 52.381 13.24 0.00 46.45 5.54
58 59 2.619849 GCCATACCCTGCATGATAGCAT 60.620 50.000 0.00 0.00 44.68 3.79
59 60 1.271543 GCCATACCCTGCATGATAGCA 60.272 52.381 0.00 0.00 43.35 3.49
60 61 1.457346 GCCATACCCTGCATGATAGC 58.543 55.000 0.00 0.00 0.00 2.97
61 62 1.632409 AGGCCATACCCTGCATGATAG 59.368 52.381 5.01 0.00 40.58 2.08
62 63 1.746157 AGGCCATACCCTGCATGATA 58.254 50.000 5.01 0.00 40.58 2.15
63 64 0.855598 AAGGCCATACCCTGCATGAT 59.144 50.000 5.01 0.00 40.58 2.45
64 65 0.106569 CAAGGCCATACCCTGCATGA 60.107 55.000 5.01 0.00 40.58 3.07
65 66 1.111116 CCAAGGCCATACCCTGCATG 61.111 60.000 5.01 0.00 40.58 4.06
66 67 1.231068 CCAAGGCCATACCCTGCAT 59.769 57.895 5.01 0.00 40.58 3.96
67 68 2.682846 CCAAGGCCATACCCTGCA 59.317 61.111 5.01 0.00 40.58 4.41
68 69 1.994885 TAGCCAAGGCCATACCCTGC 61.995 60.000 5.01 0.00 43.17 4.85
69 70 0.773644 ATAGCCAAGGCCATACCCTG 59.226 55.000 5.01 0.00 43.17 4.45
70 71 1.425448 GAATAGCCAAGGCCATACCCT 59.575 52.381 5.01 0.00 43.17 4.34
71 72 1.144913 TGAATAGCCAAGGCCATACCC 59.855 52.381 5.01 0.00 43.17 3.69
72 73 2.623416 GTTGAATAGCCAAGGCCATACC 59.377 50.000 5.01 0.00 43.17 2.73
73 74 3.066760 GTGTTGAATAGCCAAGGCCATAC 59.933 47.826 5.01 0.00 43.17 2.39
74 75 3.287222 GTGTTGAATAGCCAAGGCCATA 58.713 45.455 5.01 0.00 43.17 2.74
75 76 2.102578 GTGTTGAATAGCCAAGGCCAT 58.897 47.619 5.01 0.00 43.17 4.40
76 77 1.202989 TGTGTTGAATAGCCAAGGCCA 60.203 47.619 5.01 0.00 43.17 5.36
77 78 1.202348 GTGTGTTGAATAGCCAAGGCC 59.798 52.381 7.62 0.00 43.17 5.19
78 79 1.885887 TGTGTGTTGAATAGCCAAGGC 59.114 47.619 2.02 2.02 42.33 4.35
79 80 3.149196 ACTGTGTGTTGAATAGCCAAGG 58.851 45.455 0.00 0.00 0.00 3.61
80 81 4.516698 AGAACTGTGTGTTGAATAGCCAAG 59.483 41.667 0.00 0.00 39.30 3.61
81 82 4.460263 AGAACTGTGTGTTGAATAGCCAA 58.540 39.130 0.00 0.00 39.30 4.52
82 83 4.085357 AGAACTGTGTGTTGAATAGCCA 57.915 40.909 0.00 0.00 39.30 4.75
83 84 4.083271 GGAAGAACTGTGTGTTGAATAGCC 60.083 45.833 0.00 0.00 39.30 3.93
84 85 4.377431 CGGAAGAACTGTGTGTTGAATAGC 60.377 45.833 0.00 0.00 39.30 2.97
85 86 4.152402 CCGGAAGAACTGTGTGTTGAATAG 59.848 45.833 0.00 0.00 39.30 1.73
86 87 4.062293 CCGGAAGAACTGTGTGTTGAATA 58.938 43.478 0.00 0.00 39.30 1.75
87 88 2.878406 CCGGAAGAACTGTGTGTTGAAT 59.122 45.455 0.00 0.00 39.30 2.57
88 89 2.285083 CCGGAAGAACTGTGTGTTGAA 58.715 47.619 0.00 0.00 39.30 2.69
89 90 1.208535 ACCGGAAGAACTGTGTGTTGA 59.791 47.619 9.46 0.00 39.30 3.18
90 91 1.330521 CACCGGAAGAACTGTGTGTTG 59.669 52.381 9.46 0.00 39.30 3.33
91 92 1.663695 CACCGGAAGAACTGTGTGTT 58.336 50.000 9.46 0.00 42.38 3.32
92 93 0.179056 CCACCGGAAGAACTGTGTGT 60.179 55.000 9.46 0.00 0.00 3.72
93 94 0.179056 ACCACCGGAAGAACTGTGTG 60.179 55.000 9.46 0.00 0.00 3.82
94 95 0.179056 CACCACCGGAAGAACTGTGT 60.179 55.000 9.46 0.00 0.00 3.72
95 96 0.884704 CCACCACCGGAAGAACTGTG 60.885 60.000 9.46 4.17 0.00 3.66
96 97 1.342672 ACCACCACCGGAAGAACTGT 61.343 55.000 9.46 0.00 0.00 3.55
97 98 0.682852 TACCACCACCGGAAGAACTG 59.317 55.000 9.46 0.00 0.00 3.16
98 99 0.683412 GTACCACCACCGGAAGAACT 59.317 55.000 9.46 0.00 0.00 3.01
99 100 0.393820 TGTACCACCACCGGAAGAAC 59.606 55.000 9.46 0.00 0.00 3.01
100 101 0.682852 CTGTACCACCACCGGAAGAA 59.317 55.000 9.46 0.00 0.00 2.52
101 102 0.470456 ACTGTACCACCACCGGAAGA 60.470 55.000 9.46 0.00 0.00 2.87
102 103 0.037605 GACTGTACCACCACCGGAAG 60.038 60.000 9.46 0.00 0.00 3.46
103 104 1.808531 CGACTGTACCACCACCGGAA 61.809 60.000 9.46 0.00 0.00 4.30
104 105 2.270257 CGACTGTACCACCACCGGA 61.270 63.158 9.46 0.00 0.00 5.14
105 106 2.260434 CGACTGTACCACCACCGG 59.740 66.667 0.00 0.00 0.00 5.28
106 107 2.260434 CCGACTGTACCACCACCG 59.740 66.667 0.00 0.00 0.00 4.94
107 108 1.183676 AGTCCGACTGTACCACCACC 61.184 60.000 0.00 0.00 0.00 4.61
108 109 0.243095 GAGTCCGACTGTACCACCAC 59.757 60.000 5.57 0.00 0.00 4.16
109 110 1.239296 CGAGTCCGACTGTACCACCA 61.239 60.000 5.57 0.00 38.22 4.17
110 111 1.505353 CGAGTCCGACTGTACCACC 59.495 63.158 5.57 0.00 38.22 4.61
111 112 1.505353 CCGAGTCCGACTGTACCAC 59.495 63.158 5.57 0.00 38.22 4.16
112 113 2.338015 GCCGAGTCCGACTGTACCA 61.338 63.158 5.57 0.00 38.22 3.25
113 114 2.488820 GCCGAGTCCGACTGTACC 59.511 66.667 5.57 0.00 38.22 3.34
114 115 2.099831 CGCCGAGTCCGACTGTAC 59.900 66.667 5.57 0.00 38.22 2.90
115 116 2.046988 TCGCCGAGTCCGACTGTA 60.047 61.111 5.57 0.00 38.22 2.74
121 122 4.838486 GAGCAGTCGCCGAGTCCG 62.838 72.222 0.00 0.00 39.83 4.79
122 123 2.493907 AAAGAGCAGTCGCCGAGTCC 62.494 60.000 0.00 0.00 39.83 3.85
123 124 1.073768 GAAAGAGCAGTCGCCGAGTC 61.074 60.000 0.00 0.00 39.83 3.36
124 125 1.080434 GAAAGAGCAGTCGCCGAGT 60.080 57.895 0.00 0.00 39.83 4.18
125 126 1.075425 CTGAAAGAGCAGTCGCCGAG 61.075 60.000 0.00 0.00 39.83 4.63
126 127 1.080501 CTGAAAGAGCAGTCGCCGA 60.081 57.895 0.00 0.00 39.83 5.54
127 128 0.109272 TACTGAAAGAGCAGTCGCCG 60.109 55.000 0.00 0.00 45.54 6.46
128 129 2.301577 ATACTGAAAGAGCAGTCGCC 57.698 50.000 0.00 0.00 45.54 5.54
129 130 3.061429 GTCAATACTGAAAGAGCAGTCGC 59.939 47.826 0.00 0.00 45.54 5.19
130 131 3.301906 CGTCAATACTGAAAGAGCAGTCG 59.698 47.826 0.00 0.00 45.54 4.18
131 132 4.486090 TCGTCAATACTGAAAGAGCAGTC 58.514 43.478 0.00 0.00 45.54 3.51
133 134 5.578336 TCATTCGTCAATACTGAAAGAGCAG 59.422 40.000 0.00 0.00 41.63 4.24
134 135 5.478407 TCATTCGTCAATACTGAAAGAGCA 58.522 37.500 0.00 0.00 37.43 4.26
135 136 6.256539 TCATCATTCGTCAATACTGAAAGAGC 59.743 38.462 0.00 0.00 37.43 4.09
136 137 7.761651 TCATCATTCGTCAATACTGAAAGAG 57.238 36.000 0.00 0.00 37.43 2.85
137 138 8.200120 AGATCATCATTCGTCAATACTGAAAGA 58.800 33.333 0.00 0.00 37.43 2.52
138 139 8.362860 AGATCATCATTCGTCAATACTGAAAG 57.637 34.615 0.00 0.00 42.29 2.62
139 140 7.981225 TGAGATCATCATTCGTCAATACTGAAA 59.019 33.333 0.00 0.00 29.75 2.69
140 141 7.491682 TGAGATCATCATTCGTCAATACTGAA 58.508 34.615 0.00 0.00 29.75 3.02
141 142 7.042797 TGAGATCATCATTCGTCAATACTGA 57.957 36.000 0.00 0.00 31.12 3.41
142 143 7.886405 ATGAGATCATCATTCGTCAATACTG 57.114 36.000 0.00 0.00 46.97 2.74
157 158 6.603599 CCCATATGCTGATTTGATGAGATCAT 59.396 38.462 0.00 0.00 39.39 2.45
158 159 5.944007 CCCATATGCTGATTTGATGAGATCA 59.056 40.000 0.00 0.00 37.55 2.92
159 160 5.163642 GCCCATATGCTGATTTGATGAGATC 60.164 44.000 0.00 0.00 0.00 2.75
160 161 4.705507 GCCCATATGCTGATTTGATGAGAT 59.294 41.667 0.00 0.00 0.00 2.75
161 162 4.077108 GCCCATATGCTGATTTGATGAGA 58.923 43.478 0.00 0.00 0.00 3.27
162 163 3.824443 TGCCCATATGCTGATTTGATGAG 59.176 43.478 0.00 0.00 0.00 2.90
163 164 3.834938 TGCCCATATGCTGATTTGATGA 58.165 40.909 0.00 0.00 0.00 2.92
164 165 4.801330 ATGCCCATATGCTGATTTGATG 57.199 40.909 0.00 0.00 0.00 3.07
165 166 5.305902 TCAAATGCCCATATGCTGATTTGAT 59.694 36.000 19.80 0.00 38.06 2.57
166 167 4.650131 TCAAATGCCCATATGCTGATTTGA 59.350 37.500 19.80 19.80 39.40 2.69
167 168 4.951254 TCAAATGCCCATATGCTGATTTG 58.049 39.130 17.29 17.29 36.61 2.32
168 169 5.818678 ATCAAATGCCCATATGCTGATTT 57.181 34.783 0.00 0.00 0.00 2.17
169 170 6.014647 AGTATCAAATGCCCATATGCTGATT 58.985 36.000 0.00 0.00 0.00 2.57
170 171 5.417894 CAGTATCAAATGCCCATATGCTGAT 59.582 40.000 0.00 1.50 33.67 2.90
171 172 4.763279 CAGTATCAAATGCCCATATGCTGA 59.237 41.667 0.00 0.00 33.67 4.26
172 173 4.082408 CCAGTATCAAATGCCCATATGCTG 60.082 45.833 0.00 0.00 32.22 4.41
173 174 4.084287 CCAGTATCAAATGCCCATATGCT 58.916 43.478 0.00 0.00 0.00 3.79
174 175 4.081406 TCCAGTATCAAATGCCCATATGC 58.919 43.478 0.00 0.00 0.00 3.14
175 176 5.563592 TCTCCAGTATCAAATGCCCATATG 58.436 41.667 0.00 0.00 0.00 1.78
176 177 5.848286 TCTCCAGTATCAAATGCCCATAT 57.152 39.130 0.00 0.00 0.00 1.78
177 178 5.848286 ATCTCCAGTATCAAATGCCCATA 57.152 39.130 0.00 0.00 0.00 2.74
178 179 4.736611 ATCTCCAGTATCAAATGCCCAT 57.263 40.909 0.00 0.00 0.00 4.00
179 180 4.524802 AATCTCCAGTATCAAATGCCCA 57.475 40.909 0.00 0.00 0.00 5.36
180 181 6.772716 TCTTTAATCTCCAGTATCAAATGCCC 59.227 38.462 0.00 0.00 0.00 5.36
181 182 7.500559 AGTCTTTAATCTCCAGTATCAAATGCC 59.499 37.037 0.00 0.00 0.00 4.40
182 183 8.443953 AGTCTTTAATCTCCAGTATCAAATGC 57.556 34.615 0.00 0.00 0.00 3.56
186 187 9.605275 CATCAAGTCTTTAATCTCCAGTATCAA 57.395 33.333 0.00 0.00 0.00 2.57
187 188 8.981659 TCATCAAGTCTTTAATCTCCAGTATCA 58.018 33.333 0.00 0.00 0.00 2.15
188 189 9.823647 TTCATCAAGTCTTTAATCTCCAGTATC 57.176 33.333 0.00 0.00 0.00 2.24
189 190 9.829507 CTTCATCAAGTCTTTAATCTCCAGTAT 57.170 33.333 0.00 0.00 0.00 2.12
190 191 8.260818 CCTTCATCAAGTCTTTAATCTCCAGTA 58.739 37.037 0.00 0.00 0.00 2.74
191 192 7.038017 TCCTTCATCAAGTCTTTAATCTCCAGT 60.038 37.037 0.00 0.00 0.00 4.00
192 193 7.334090 TCCTTCATCAAGTCTTTAATCTCCAG 58.666 38.462 0.00 0.00 0.00 3.86
193 194 7.257790 TCCTTCATCAAGTCTTTAATCTCCA 57.742 36.000 0.00 0.00 0.00 3.86
194 195 8.567285 TTTCCTTCATCAAGTCTTTAATCTCC 57.433 34.615 0.00 0.00 0.00 3.71
195 196 8.672815 CCTTTCCTTCATCAAGTCTTTAATCTC 58.327 37.037 0.00 0.00 0.00 2.75
196 197 7.613411 CCCTTTCCTTCATCAAGTCTTTAATCT 59.387 37.037 0.00 0.00 0.00 2.40
197 198 7.611855 TCCCTTTCCTTCATCAAGTCTTTAATC 59.388 37.037 0.00 0.00 0.00 1.75
198 199 7.470192 TCCCTTTCCTTCATCAAGTCTTTAAT 58.530 34.615 0.00 0.00 0.00 1.40
199 200 6.848069 TCCCTTTCCTTCATCAAGTCTTTAA 58.152 36.000 0.00 0.00 0.00 1.52
200 201 6.044404 ACTCCCTTTCCTTCATCAAGTCTTTA 59.956 38.462 0.00 0.00 0.00 1.85
201 202 5.163045 ACTCCCTTTCCTTCATCAAGTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
202 203 4.352298 ACTCCCTTTCCTTCATCAAGTCTT 59.648 41.667 0.00 0.00 0.00 3.01
203 204 3.913163 ACTCCCTTTCCTTCATCAAGTCT 59.087 43.478 0.00 0.00 0.00 3.24
204 205 4.293662 ACTCCCTTTCCTTCATCAAGTC 57.706 45.455 0.00 0.00 0.00 3.01
205 206 4.731313 AACTCCCTTTCCTTCATCAAGT 57.269 40.909 0.00 0.00 0.00 3.16
206 207 6.410942 AAAAACTCCCTTTCCTTCATCAAG 57.589 37.500 0.00 0.00 0.00 3.02
207 208 6.266786 GGTAAAAACTCCCTTTCCTTCATCAA 59.733 38.462 0.00 0.00 0.00 2.57
208 209 5.773176 GGTAAAAACTCCCTTTCCTTCATCA 59.227 40.000 0.00 0.00 0.00 3.07
209 210 6.010850 AGGTAAAAACTCCCTTTCCTTCATC 58.989 40.000 0.00 0.00 0.00 2.92
210 211 5.965486 AGGTAAAAACTCCCTTTCCTTCAT 58.035 37.500 0.00 0.00 0.00 2.57
211 212 5.382616 GAGGTAAAAACTCCCTTTCCTTCA 58.617 41.667 0.00 0.00 0.00 3.02
212 213 4.454847 CGAGGTAAAAACTCCCTTTCCTTC 59.545 45.833 0.00 0.00 0.00 3.46
213 214 4.395625 CGAGGTAAAAACTCCCTTTCCTT 58.604 43.478 0.00 0.00 0.00 3.36
214 215 3.244805 CCGAGGTAAAAACTCCCTTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
215 216 3.079578 CCGAGGTAAAAACTCCCTTTCC 58.920 50.000 0.00 0.00 0.00 3.13
216 217 4.011966 TCCGAGGTAAAAACTCCCTTTC 57.988 45.455 0.00 0.00 0.00 2.62
217 218 4.442401 TTCCGAGGTAAAAACTCCCTTT 57.558 40.909 0.00 0.00 0.00 3.11
218 219 4.442401 TTTCCGAGGTAAAAACTCCCTT 57.558 40.909 0.00 0.00 0.00 3.95
219 220 4.652679 ATTTCCGAGGTAAAAACTCCCT 57.347 40.909 0.00 0.00 0.00 4.20
220 221 5.706833 TGTAATTTCCGAGGTAAAAACTCCC 59.293 40.000 0.00 0.00 0.00 4.30
221 222 6.806388 TGTAATTTCCGAGGTAAAAACTCC 57.194 37.500 0.00 0.00 0.00 3.85
222 223 7.148523 ACGATGTAATTTCCGAGGTAAAAACTC 60.149 37.037 0.00 0.00 0.00 3.01
223 224 6.652062 ACGATGTAATTTCCGAGGTAAAAACT 59.348 34.615 0.00 0.00 0.00 2.66
224 225 6.834876 ACGATGTAATTTCCGAGGTAAAAAC 58.165 36.000 0.00 0.00 0.00 2.43
225 226 7.818930 ACTACGATGTAATTTCCGAGGTAAAAA 59.181 33.333 0.00 0.00 0.00 1.94
226 227 7.322664 ACTACGATGTAATTTCCGAGGTAAAA 58.677 34.615 0.00 0.00 0.00 1.52
227 228 6.866480 ACTACGATGTAATTTCCGAGGTAAA 58.134 36.000 0.00 0.00 0.00 2.01
228 229 6.095300 TGACTACGATGTAATTTCCGAGGTAA 59.905 38.462 0.00 0.00 0.00 2.85
229 230 5.589855 TGACTACGATGTAATTTCCGAGGTA 59.410 40.000 0.00 0.00 0.00 3.08
230 231 4.400251 TGACTACGATGTAATTTCCGAGGT 59.600 41.667 0.00 0.00 0.00 3.85
231 232 4.928601 TGACTACGATGTAATTTCCGAGG 58.071 43.478 0.00 0.00 0.00 4.63
232 233 5.817988 TCTGACTACGATGTAATTTCCGAG 58.182 41.667 0.00 0.00 0.00 4.63
233 234 5.823209 TCTGACTACGATGTAATTTCCGA 57.177 39.130 0.00 0.00 0.00 4.55
234 235 7.861372 ACTATTCTGACTACGATGTAATTTCCG 59.139 37.037 0.00 0.00 0.00 4.30
235 236 8.969267 CACTATTCTGACTACGATGTAATTTCC 58.031 37.037 0.00 0.00 0.00 3.13
236 237 9.517609 ACACTATTCTGACTACGATGTAATTTC 57.482 33.333 0.00 0.00 0.00 2.17
237 238 9.871238 AACACTATTCTGACTACGATGTAATTT 57.129 29.630 0.00 0.00 0.00 1.82
238 239 9.302345 CAACACTATTCTGACTACGATGTAATT 57.698 33.333 0.00 0.00 0.00 1.40
239 240 7.435488 GCAACACTATTCTGACTACGATGTAAT 59.565 37.037 0.00 0.00 0.00 1.89
240 241 6.750501 GCAACACTATTCTGACTACGATGTAA 59.249 38.462 0.00 0.00 0.00 2.41
241 242 6.127842 TGCAACACTATTCTGACTACGATGTA 60.128 38.462 0.00 0.00 0.00 2.29
242 243 5.103000 GCAACACTATTCTGACTACGATGT 58.897 41.667 0.00 0.00 0.00 3.06
243 244 5.102313 TGCAACACTATTCTGACTACGATG 58.898 41.667 0.00 0.00 0.00 3.84
244 245 5.125578 TCTGCAACACTATTCTGACTACGAT 59.874 40.000 0.00 0.00 0.00 3.73
245 246 4.457949 TCTGCAACACTATTCTGACTACGA 59.542 41.667 0.00 0.00 0.00 3.43
246 247 4.733850 TCTGCAACACTATTCTGACTACG 58.266 43.478 0.00 0.00 0.00 3.51
247 248 5.457148 CGATCTGCAACACTATTCTGACTAC 59.543 44.000 0.00 0.00 0.00 2.73
248 249 5.450550 CCGATCTGCAACACTATTCTGACTA 60.451 44.000 0.00 0.00 0.00 2.59
249 250 4.428209 CGATCTGCAACACTATTCTGACT 58.572 43.478 0.00 0.00 0.00 3.41
250 251 3.553511 CCGATCTGCAACACTATTCTGAC 59.446 47.826 0.00 0.00 0.00 3.51
251 252 3.195610 ACCGATCTGCAACACTATTCTGA 59.804 43.478 0.00 0.00 0.00 3.27
252 253 3.525537 ACCGATCTGCAACACTATTCTG 58.474 45.455 0.00 0.00 0.00 3.02
253 254 3.895232 ACCGATCTGCAACACTATTCT 57.105 42.857 0.00 0.00 0.00 2.40
254 255 3.063997 CCAACCGATCTGCAACACTATTC 59.936 47.826 0.00 0.00 0.00 1.75
255 256 3.009723 CCAACCGATCTGCAACACTATT 58.990 45.455 0.00 0.00 0.00 1.73
256 257 2.632377 CCAACCGATCTGCAACACTAT 58.368 47.619 0.00 0.00 0.00 2.12
257 258 1.943968 GCCAACCGATCTGCAACACTA 60.944 52.381 0.00 0.00 0.00 2.74
258 259 1.237285 GCCAACCGATCTGCAACACT 61.237 55.000 0.00 0.00 0.00 3.55
259 260 1.210155 GCCAACCGATCTGCAACAC 59.790 57.895 0.00 0.00 0.00 3.32
260 261 0.821301 TTGCCAACCGATCTGCAACA 60.821 50.000 0.00 0.00 38.68 3.33
261 262 0.313672 TTTGCCAACCGATCTGCAAC 59.686 50.000 0.00 0.00 42.84 4.17
262 263 0.313672 GTTTGCCAACCGATCTGCAA 59.686 50.000 0.00 0.00 41.57 4.08
263 264 0.537143 AGTTTGCCAACCGATCTGCA 60.537 50.000 0.00 0.00 32.70 4.41
264 265 1.448985 TAGTTTGCCAACCGATCTGC 58.551 50.000 0.00 0.00 32.70 4.26
265 266 4.442706 ACTATAGTTTGCCAACCGATCTG 58.557 43.478 0.00 0.00 32.70 2.90
266 267 4.694339 GACTATAGTTTGCCAACCGATCT 58.306 43.478 6.88 0.00 32.70 2.75
267 268 3.489785 CGACTATAGTTTGCCAACCGATC 59.510 47.826 6.88 0.00 32.70 3.69
268 269 3.454375 CGACTATAGTTTGCCAACCGAT 58.546 45.455 6.88 0.00 32.70 4.18
269 270 2.417651 CCGACTATAGTTTGCCAACCGA 60.418 50.000 6.88 0.00 32.70 4.69
270 271 1.931172 CCGACTATAGTTTGCCAACCG 59.069 52.381 6.88 3.25 32.70 4.44
271 272 2.981898 ACCGACTATAGTTTGCCAACC 58.018 47.619 6.88 0.00 32.70 3.77
272 273 3.126343 CCAACCGACTATAGTTTGCCAAC 59.874 47.826 6.88 0.00 0.00 3.77
273 274 3.340034 CCAACCGACTATAGTTTGCCAA 58.660 45.455 6.88 0.00 0.00 4.52
274 275 2.937873 GCCAACCGACTATAGTTTGCCA 60.938 50.000 6.88 0.00 30.58 4.92
275 276 1.669265 GCCAACCGACTATAGTTTGCC 59.331 52.381 6.88 0.00 30.58 4.52
276 277 2.352388 TGCCAACCGACTATAGTTTGC 58.648 47.619 6.88 0.00 35.73 3.68
277 278 4.454504 AGTTTGCCAACCGACTATAGTTTG 59.545 41.667 6.88 7.73 32.70 2.93
278 279 4.648651 AGTTTGCCAACCGACTATAGTTT 58.351 39.130 6.88 0.00 32.70 2.66
279 280 4.281898 AGTTTGCCAACCGACTATAGTT 57.718 40.909 6.88 0.00 32.70 2.24
280 281 3.975168 AGTTTGCCAACCGACTATAGT 57.025 42.857 4.68 4.68 32.70 2.12
282 283 5.535333 GCTATAGTTTGCCAACCGACTATA 58.465 41.667 0.84 7.09 36.83 1.31
283 284 4.377897 GCTATAGTTTGCCAACCGACTAT 58.622 43.478 0.84 5.78 38.48 2.12
284 285 3.788937 GCTATAGTTTGCCAACCGACTA 58.211 45.455 0.84 0.00 32.70 2.59
285 286 2.629051 GCTATAGTTTGCCAACCGACT 58.371 47.619 0.84 0.00 32.70 4.18
294 295 2.100916 TCTCGGTGAGGCTATAGTTTGC 59.899 50.000 0.84 0.00 0.00 3.68
295 296 3.632604 TCTCTCGGTGAGGCTATAGTTTG 59.367 47.826 7.19 0.00 42.86 2.93
296 297 3.899726 TCTCTCGGTGAGGCTATAGTTT 58.100 45.455 7.19 0.00 42.86 2.66
297 298 3.579534 TCTCTCGGTGAGGCTATAGTT 57.420 47.619 7.19 0.00 42.86 2.24
298 299 3.215975 GTTCTCTCGGTGAGGCTATAGT 58.784 50.000 7.19 0.00 42.86 2.12
299 300 2.554893 GGTTCTCTCGGTGAGGCTATAG 59.445 54.545 7.19 0.00 42.86 1.31
300 301 2.092049 TGGTTCTCTCGGTGAGGCTATA 60.092 50.000 7.19 0.00 42.86 1.31
301 302 1.342076 TGGTTCTCTCGGTGAGGCTAT 60.342 52.381 7.19 0.00 42.86 2.97
302 303 0.039180 TGGTTCTCTCGGTGAGGCTA 59.961 55.000 7.19 0.00 42.86 3.93
303 304 1.228894 TGGTTCTCTCGGTGAGGCT 60.229 57.895 7.19 0.00 42.86 4.58
304 305 1.079750 GTGGTTCTCTCGGTGAGGC 60.080 63.158 7.19 1.72 42.86 4.70
305 306 1.213013 CGTGGTTCTCTCGGTGAGG 59.787 63.158 7.19 0.00 42.86 3.86
306 307 1.213013 CCGTGGTTCTCTCGGTGAG 59.787 63.158 0.68 0.68 43.96 3.51
307 308 2.927580 GCCGTGGTTCTCTCGGTGA 61.928 63.158 8.03 0.00 45.11 4.02
308 309 2.432628 GCCGTGGTTCTCTCGGTG 60.433 66.667 8.03 0.00 45.11 4.94
309 310 2.600769 AGCCGTGGTTCTCTCGGT 60.601 61.111 8.03 0.00 45.11 4.69
310 311 2.125912 CAGCCGTGGTTCTCTCGG 60.126 66.667 0.00 0.00 45.94 4.63
311 312 1.444553 GACAGCCGTGGTTCTCTCG 60.445 63.158 0.00 0.00 0.00 4.04
312 313 1.079750 GGACAGCCGTGGTTCTCTC 60.080 63.158 0.00 0.00 0.00 3.20
313 314 1.407656 TTGGACAGCCGTGGTTCTCT 61.408 55.000 0.00 0.00 36.79 3.10
314 315 0.951040 CTTGGACAGCCGTGGTTCTC 60.951 60.000 0.00 0.00 36.79 2.87
315 316 1.071471 CTTGGACAGCCGTGGTTCT 59.929 57.895 0.00 0.00 36.79 3.01
316 317 1.966451 CCTTGGACAGCCGTGGTTC 60.966 63.158 0.00 0.00 36.79 3.62
317 318 2.113139 CCTTGGACAGCCGTGGTT 59.887 61.111 0.00 0.00 36.79 3.67
318 319 4.643387 GCCTTGGACAGCCGTGGT 62.643 66.667 0.00 0.00 36.79 4.16
349 350 2.609459 GTGTCAAGTCTCAAGTGTGTGG 59.391 50.000 0.00 0.00 0.00 4.17
571 610 2.859273 GATGGACCGGACTGCACCTG 62.859 65.000 9.46 0.00 0.00 4.00
572 611 2.607750 ATGGACCGGACTGCACCT 60.608 61.111 9.46 0.00 0.00 4.00
576 615 2.501610 GAGGATGGACCGGACTGC 59.498 66.667 9.46 0.00 44.74 4.40
579 618 3.537874 CGGGAGGATGGACCGGAC 61.538 72.222 9.46 0.00 43.69 4.79
600 639 1.933853 ACGTATTTGATCGAAGCAGCC 59.066 47.619 1.10 0.00 0.00 4.85
634 676 5.739161 GCAACTGAAATAATCAATCACGGAC 59.261 40.000 0.00 0.00 37.67 4.79
637 679 5.323900 ACGCAACTGAAATAATCAATCACG 58.676 37.500 0.00 0.00 37.67 4.35
692 757 3.626996 CTCGCAATGCCCACCCAGA 62.627 63.158 0.00 0.00 0.00 3.86
700 765 1.474077 AGGAAAATCACTCGCAATGCC 59.526 47.619 0.00 0.00 0.00 4.40
713 781 2.131972 GCGGCGAACAAAAAGGAAAAT 58.868 42.857 12.98 0.00 0.00 1.82
735 856 4.814294 ACGAAGCGCCCGATCCAC 62.814 66.667 23.57 0.00 0.00 4.02
767 889 0.596083 GGTGATCTCAGACGCATCGG 60.596 60.000 0.00 0.00 0.00 4.18
785 917 0.731417 CAAAGCGCAGGATCAGAAGG 59.269 55.000 11.47 0.00 0.00 3.46
1812 2376 4.796495 GAGCCGCGGGATTGGGTT 62.796 66.667 29.38 0.00 35.78 4.11
1815 2379 4.473520 ACAGAGCCGCGGGATTGG 62.474 66.667 29.38 0.00 0.00 3.16
1987 2563 2.345244 CCTCGAACTGCAGCCTGT 59.655 61.111 15.27 0.00 0.00 4.00
1989 2565 1.185618 TACACCTCGAACTGCAGCCT 61.186 55.000 15.27 0.00 0.00 4.58
2225 2801 0.264955 GGAGGAGGGGGATGTAGTCA 59.735 60.000 0.00 0.00 0.00 3.41
2342 2928 5.122082 GGTTTGTTTTCCAATGTGGCATATG 59.878 40.000 0.00 0.00 37.47 1.78
2480 3074 2.041081 AGTAACCCACCAATAAGCAGCA 59.959 45.455 0.00 0.00 0.00 4.41
2591 3192 8.956426 ACAAAGATCATGTAAATGTAACCGATT 58.044 29.630 2.62 0.00 0.00 3.34
2628 3229 7.703058 ACGTCCATAAATTCCTCTTGAAAAT 57.297 32.000 0.00 0.00 36.33 1.82
2636 3237 4.338379 AGGCTACGTCCATAAATTCCTC 57.662 45.455 0.00 0.00 0.00 3.71
2637 3238 4.080526 ACAAGGCTACGTCCATAAATTCCT 60.081 41.667 0.00 0.00 0.00 3.36
2642 3243 3.965379 TGACAAGGCTACGTCCATAAA 57.035 42.857 12.84 0.00 0.00 1.40
2647 3248 1.873698 TTGTTGACAAGGCTACGTCC 58.126 50.000 12.84 0.00 0.00 4.79
2651 3252 5.438761 AACAGATTTGTTGACAAGGCTAC 57.561 39.130 0.00 0.00 45.54 3.58
2663 3264 9.216117 GGTGTACTCAAATACTAACAGATTTGT 57.784 33.333 7.10 0.00 41.65 2.83
2757 3358 6.723052 ACTCATTTCTCCAATTGTCCAGAAAT 59.277 34.615 20.88 20.88 43.34 2.17
2865 3466 3.137176 TGATCCAGAATCCCAGATCAACC 59.863 47.826 0.00 0.00 41.51 3.77
2866 3467 4.428294 TGATCCAGAATCCCAGATCAAC 57.572 45.455 0.00 0.00 41.51 3.18
2938 3539 9.204570 GTGTAACTGTAACCAATGGCTATATAG 57.795 37.037 5.30 5.30 0.00 1.31
2972 3573 2.417933 CTCTCAAAATGCGACCAAGGAG 59.582 50.000 0.00 0.00 0.00 3.69
2978 3579 4.440839 AATTTCCTCTCAAAATGCGACC 57.559 40.909 0.00 0.00 0.00 4.79
2980 3581 6.611381 CAACTAATTTCCTCTCAAAATGCGA 58.389 36.000 0.00 0.00 0.00 5.10
2981 3582 5.287035 GCAACTAATTTCCTCTCAAAATGCG 59.713 40.000 0.00 0.00 0.00 4.73
2984 3585 6.575162 ACGCAACTAATTTCCTCTCAAAAT 57.425 33.333 0.00 0.00 0.00 1.82
3001 3602 7.007697 CAGATTTAGTTACAACACTACGCAAC 58.992 38.462 0.00 0.00 0.00 4.17
3002 3603 6.924612 TCAGATTTAGTTACAACACTACGCAA 59.075 34.615 0.00 0.00 0.00 4.85
3031 3632 6.945435 ACAGTACCAAAATCACACCAATGATA 59.055 34.615 0.00 0.00 38.40 2.15
3080 3681 9.567848 GAAAAACAATACAACTGAAGTCTGAAA 57.432 29.630 0.00 0.00 0.00 2.69
3129 3737 9.288576 CATGCTCCTTAAAAATCATATACTCCA 57.711 33.333 0.00 0.00 0.00 3.86
3146 3754 3.920231 TCTATGCTTGACATGCTCCTT 57.080 42.857 13.81 0.83 40.06 3.36
3179 3787 5.264395 AGCCACAGAAACTATAGGCAAATT 58.736 37.500 4.43 0.00 44.34 1.82
3199 3807 3.625649 AGATGAGGAGAAAACAGAGCC 57.374 47.619 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.