Multiple sequence alignment - TraesCS1A01G413900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G413900 chr1A 100.000 5359 0 0 1 5359 573507694 573502336 0.000000e+00 9897.0
1 TraesCS1A01G413900 chr1D 93.839 4139 181 32 827 4927 477274830 477270728 0.000000e+00 6163.0
2 TraesCS1A01G413900 chr1D 88.889 378 29 6 1 376 477276446 477276080 2.280000e-123 453.0
3 TraesCS1A01G413900 chr1D 91.772 316 18 4 4937 5247 477270749 477270437 2.960000e-117 433.0
4 TraesCS1A01G413900 chr1D 78.144 334 43 20 377 703 477275160 477274850 9.170000e-43 185.0
5 TraesCS1A01G413900 chr1D 88.889 135 12 2 5116 5247 477265264 477265130 4.290000e-36 163.0
6 TraesCS1A01G413900 chr1D 92.233 103 8 0 5255 5357 477270458 477270356 4.330000e-31 147.0
7 TraesCS1A01G413900 chr1D 89.286 112 11 1 5249 5359 285434194 285434083 7.240000e-29 139.0
8 TraesCS1A01G413900 chr1D 96.250 80 3 0 1182 1261 116478902 116478823 1.210000e-26 132.0
9 TraesCS1A01G413900 chr1B 95.296 1658 63 11 2989 4638 664953861 664952211 0.000000e+00 2615.0
10 TraesCS1A01G413900 chr1B 89.858 986 50 16 836 1783 664955739 664954766 0.000000e+00 1221.0
11 TraesCS1A01G413900 chr1B 90.270 853 62 14 2354 3201 675712830 675711994 0.000000e+00 1096.0
12 TraesCS1A01G413900 chr1B 94.487 653 32 3 2359 3007 664954584 664953932 0.000000e+00 1003.0
13 TraesCS1A01G413900 chr1B 83.057 785 100 24 2426 3204 504629284 504628527 0.000000e+00 682.0
14 TraesCS1A01G413900 chr1B 86.027 594 43 19 3203 3786 675711885 675711322 7.680000e-168 601.0
15 TraesCS1A01G413900 chr1B 88.095 378 32 7 1 376 664958141 664957775 2.290000e-118 436.0
16 TraesCS1A01G413900 chr1B 91.419 303 20 5 4950 5247 664949957 664949656 1.390000e-110 411.0
17 TraesCS1A01G413900 chr1B 94.915 177 8 1 4635 4811 664950412 664950237 5.290000e-70 276.0
18 TraesCS1A01G413900 chr1B 85.780 218 23 1 4073 4290 675711288 675711079 1.940000e-54 224.0
19 TraesCS1A01G413900 chr1B 78.042 378 52 14 378 742 664956504 664956145 5.440000e-50 209.0
20 TraesCS1A01G413900 chr1B 87.719 171 11 3 2155 2315 664954769 664954599 1.970000e-44 191.0
21 TraesCS1A01G413900 chr1B 77.151 337 55 17 1624 1946 504630083 504629755 5.520000e-40 176.0
22 TraesCS1A01G413900 chr1B 76.667 420 36 23 1061 1445 675713525 675713133 5.520000e-40 176.0
23 TraesCS1A01G413900 chr1B 89.189 111 9 3 5249 5357 664949684 664949575 9.360000e-28 135.0
24 TraesCS1A01G413900 chr1B 100.000 31 0 0 957 987 675713588 675713558 2.080000e-04 58.4
25 TraesCS1A01G413900 chr3A 83.580 810 95 29 2403 3201 699802555 699803337 0.000000e+00 725.0
26 TraesCS1A01G413900 chr3A 79.848 263 38 8 1692 1946 699801856 699802111 1.530000e-40 178.0
27 TraesCS1A01G413900 chr2B 83.191 821 97 30 2396 3204 362584468 362583677 0.000000e+00 713.0
28 TraesCS1A01G413900 chr2B 82.882 812 101 26 2403 3204 514619963 514619180 0.000000e+00 695.0
29 TraesCS1A01G413900 chr2B 79.377 257 43 10 1695 1946 362585157 362584906 7.140000e-39 172.0
30 TraesCS1A01G413900 chr7B 82.657 813 100 27 2403 3201 593124369 593125154 0.000000e+00 682.0
31 TraesCS1A01G413900 chr7B 90.456 241 20 3 1023 1261 2312525 2312764 1.120000e-81 315.0
32 TraesCS1A01G413900 chr7B 83.200 125 13 8 5116 5236 510217108 510217228 2.040000e-19 108.0
33 TraesCS1A01G413900 chr4A 78.627 903 112 47 1970 2851 658960311 658959469 1.710000e-144 523.0
34 TraesCS1A01G413900 chr4A 77.083 912 123 52 1970 2851 658582200 658581345 1.060000e-121 448.0
35 TraesCS1A01G413900 chr4A 89.558 249 23 3 3488 3734 658581064 658580817 4.030000e-81 313.0
36 TraesCS1A01G413900 chr4A 88.462 234 25 2 3488 3720 658959196 658958964 1.140000e-71 281.0
37 TraesCS1A01G413900 chr4A 86.875 160 19 2 1695 1853 658960490 658960332 1.530000e-40 178.0
38 TraesCS1A01G413900 chr4A 78.544 261 44 12 1692 1946 617120142 617120396 1.540000e-35 161.0
39 TraesCS1A01G413900 chr7D 78.657 834 108 41 1970 2782 45805561 45804777 1.730000e-134 490.0
40 TraesCS1A01G413900 chr7D 82.166 471 61 13 2901 3355 45804726 45804263 3.030000e-102 383.0
41 TraesCS1A01G413900 chr7D 87.448 239 20 6 3497 3734 45804182 45803953 3.180000e-67 267.0
42 TraesCS1A01G413900 chr7D 88.789 223 12 9 966 1179 45807475 45807257 1.480000e-65 261.0
43 TraesCS1A01G413900 chr7D 80.545 257 33 9 1695 1950 45805789 45805549 1.190000e-41 182.0
44 TraesCS1A01G413900 chr7D 100.000 29 0 0 2823 2851 45804753 45804725 3.000000e-03 54.7
45 TraesCS1A01G413900 chr7A 78.017 837 118 39 1969 2787 48058124 48057336 2.920000e-127 466.0
46 TraesCS1A01G413900 chr7A 87.952 249 23 6 3492 3734 48056821 48056574 2.440000e-73 287.0
47 TraesCS1A01G413900 chr7A 79.404 369 45 20 1033 1392 48060923 48060577 1.160000e-56 231.0
48 TraesCS1A01G413900 chr7A 87.310 197 22 3 1695 1889 48058355 48058160 6.990000e-54 222.0
49 TraesCS1A01G413900 chr7A 89.720 107 11 0 5251 5357 42033791 42033685 2.600000e-28 137.0
50 TraesCS1A01G413900 chr7A 86.290 124 14 1 5118 5238 65459170 65459047 1.210000e-26 132.0
51 TraesCS1A01G413900 chr7A 94.737 38 2 0 5115 5152 25335849 25335812 5.800000e-05 60.2
52 TraesCS1A01G413900 chrUn 90.456 241 20 3 1023 1261 83991987 83992226 1.120000e-81 315.0
53 TraesCS1A01G413900 chrUn 90.456 241 20 3 1023 1261 232030266 232030505 1.120000e-81 315.0
54 TraesCS1A01G413900 chrUn 90.456 241 20 3 1023 1261 232038473 232038712 1.120000e-81 315.0
55 TraesCS1A01G413900 chrUn 88.073 109 13 0 5249 5357 112563000 112563108 4.360000e-26 130.0
56 TraesCS1A01G413900 chrUn 97.143 35 1 0 5115 5149 108241596 108241562 5.800000e-05 60.2
57 TraesCS1A01G413900 chr3D 91.411 163 10 2 1023 1184 390104298 390104139 2.510000e-53 220.0
58 TraesCS1A01G413900 chr3D 85.000 100 9 6 5114 5209 531152837 531152934 4.420000e-16 97.1
59 TraesCS1A01G413900 chr2D 89.381 113 11 1 5245 5357 513542568 513542679 2.010000e-29 141.0
60 TraesCS1A01G413900 chr2D 88.991 109 12 0 5249 5357 474573144 474573036 9.360000e-28 135.0
61 TraesCS1A01G413900 chr3B 88.991 109 12 0 5249 5357 89165610 89165502 9.360000e-28 135.0
62 TraesCS1A01G413900 chr5D 88.288 111 13 0 5249 5359 438100511 438100401 3.370000e-27 134.0
63 TraesCS1A01G413900 chr2A 83.929 56 7 2 5116 5170 559956433 559956379 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G413900 chr1A 573502336 573507694 5358 True 9897.000000 9897 100.000000 1 5359 1 chr1A.!!$R1 5358
1 TraesCS1A01G413900 chr1D 477270356 477276446 6090 True 1476.200000 6163 88.975400 1 5357 5 chr1D.!!$R4 5356
2 TraesCS1A01G413900 chr1B 664949575 664958141 8566 True 721.888889 2615 89.891111 1 5357 9 chr1B.!!$R2 5356
3 TraesCS1A01G413900 chr1B 675711079 675713588 2509 True 431.080000 1096 87.748800 957 4290 5 chr1B.!!$R3 3333
4 TraesCS1A01G413900 chr1B 504628527 504630083 1556 True 429.000000 682 80.104000 1624 3204 2 chr1B.!!$R1 1580
5 TraesCS1A01G413900 chr3A 699801856 699803337 1481 False 451.500000 725 81.714000 1692 3201 2 chr3A.!!$F1 1509
6 TraesCS1A01G413900 chr2B 514619180 514619963 783 True 695.000000 695 82.882000 2403 3204 1 chr2B.!!$R1 801
7 TraesCS1A01G413900 chr2B 362583677 362585157 1480 True 442.500000 713 81.284000 1695 3204 2 chr2B.!!$R2 1509
8 TraesCS1A01G413900 chr7B 593124369 593125154 785 False 682.000000 682 82.657000 2403 3201 1 chr7B.!!$F3 798
9 TraesCS1A01G413900 chr4A 658580817 658582200 1383 True 380.500000 448 83.320500 1970 3734 2 chr4A.!!$R1 1764
10 TraesCS1A01G413900 chr4A 658958964 658960490 1526 True 327.333333 523 84.654667 1695 3720 3 chr4A.!!$R2 2025
11 TraesCS1A01G413900 chr7D 45803953 45807475 3522 True 272.950000 490 86.267500 966 3734 6 chr7D.!!$R1 2768
12 TraesCS1A01G413900 chr7A 48056574 48060923 4349 True 301.500000 466 83.170750 1033 3734 4 chr7A.!!$R4 2701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 2438 0.107945 GTCAGTCCTGAGATGGCACC 60.108 60.000 0.00 0.00 40.75 5.01 F
824 2440 0.325933 CAGTCCTGAGATGGCACCAA 59.674 55.000 0.00 0.00 0.00 3.67 F
825 2441 1.064906 CAGTCCTGAGATGGCACCAAT 60.065 52.381 0.00 0.00 0.00 3.16 F
1589 6058 1.156736 TCTCCTTAGCGTTGCAAAGC 58.843 50.000 27.02 27.02 0.00 3.51 F
2885 7512 1.003223 ACTTAGTCGTTTGCGGTTTGC 60.003 47.619 0.00 0.00 46.70 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 6154 1.165907 TTCCTGTGAGGCAGCAAACG 61.166 55.0 0.00 0.00 43.71 3.60 R
2695 7316 2.028112 CAGAATCGTTCCACCAAGAGGA 60.028 50.0 0.00 0.00 38.69 3.71 R
2797 7423 6.210078 CCCTAGAAGCTACTAAAAGATGTCG 58.790 44.0 0.00 0.00 0.00 4.35 R
2945 7572 2.159734 GCTCATTGTTTCTCAGCACTCG 60.160 50.0 0.00 0.00 0.00 4.18 R
4474 9360 0.512952 GCAAGACGTAGCTGTGTTGG 59.487 55.0 13.72 1.13 41.83 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 2.106511 AGGTTACAACTGTGCCATCTGT 59.893 45.455 7.65 0.00 0.00 3.41
95 96 7.067008 GGTTACAACTGTGCCATCTGTAATAAT 59.933 37.037 4.41 0.00 35.56 1.28
111 112 5.362430 TGTAATAATGGGCAAGATGAAACCC 59.638 40.000 0.00 0.00 43.14 4.11
125 126 2.907042 TGAAACCCTTCTCCTCCTCTTC 59.093 50.000 0.00 0.00 32.33 2.87
126 127 1.959710 AACCCTTCTCCTCCTCTTCC 58.040 55.000 0.00 0.00 0.00 3.46
131 132 2.424234 CCTTCTCCTCCTCTTCCGAGAT 60.424 54.545 0.00 0.00 39.74 2.75
133 134 2.660572 TCTCCTCCTCTTCCGAGATTG 58.339 52.381 0.00 0.00 39.74 2.67
182 184 9.484806 ACAGAATCATTCCCAAAAAGAATAGAT 57.515 29.630 0.00 0.00 32.70 1.98
209 211 3.067106 TCTTTCTTTGATGAGGTGCGTC 58.933 45.455 0.00 0.00 0.00 5.19
262 264 7.008021 TGCTCTAGACATTATAATCATGGCA 57.992 36.000 0.00 0.00 31.22 4.92
265 267 7.551974 GCTCTAGACATTATAATCATGGCATGT 59.448 37.037 25.62 11.32 31.22 3.21
292 294 2.877300 GCTGGAGCATCTGGACTCAAAA 60.877 50.000 0.00 0.00 41.59 2.44
302 304 6.609533 CATCTGGACTCAAAAGAATGACAAG 58.390 40.000 0.00 0.00 0.00 3.16
318 320 2.487762 GACAAGGATTTCCGCAATGTCA 59.512 45.455 16.16 0.00 42.08 3.58
321 323 1.004745 AGGATTTCCGCAATGTCACCT 59.995 47.619 0.00 0.00 42.08 4.00
357 359 4.262164 GGTGGTGCAACATTCTCAAAGAAT 60.262 41.667 8.20 0.00 45.23 2.40
367 369 5.893897 ATTCTCAAAGAATGCCTCAAGAC 57.106 39.130 1.50 0.00 42.90 3.01
372 374 2.957402 AGAATGCCTCAAGACCACAA 57.043 45.000 0.00 0.00 0.00 3.33
376 378 0.961019 TGCCTCAAGACCACAATTGC 59.039 50.000 5.05 0.00 0.00 3.56
399 1681 2.105930 GCGTGCAAGCCCAACAAA 59.894 55.556 14.16 0.00 0.00 2.83
400 1682 1.520342 GCGTGCAAGCCCAACAAAA 60.520 52.632 14.16 0.00 0.00 2.44
401 1683 1.761244 GCGTGCAAGCCCAACAAAAC 61.761 55.000 14.16 0.00 0.00 2.43
405 1687 2.682352 GTGCAAGCCCAACAAAACAATT 59.318 40.909 0.00 0.00 0.00 2.32
414 1699 4.261114 CCCAACAAAACAATTGTCATTGCC 60.261 41.667 25.38 0.00 43.39 4.52
423 1708 4.012374 CAATTGTCATTGCCAGGACTACT 58.988 43.478 4.14 0.00 33.57 2.57
433 1718 2.034812 GCCAGGACTACTATCTCGGTTG 59.965 54.545 0.00 0.00 0.00 3.77
449 1734 2.504367 GGTTGCACATTGTGTCCTACT 58.496 47.619 17.64 0.00 35.75 2.57
457 1742 5.547465 CACATTGTGTCCTACTAACCTTGA 58.453 41.667 8.69 0.00 0.00 3.02
515 1806 4.142093 CCATTTCGAAGCCCATGAATCTTT 60.142 41.667 8.75 0.00 0.00 2.52
519 1810 2.030946 CGAAGCCCATGAATCTTTCGTC 59.969 50.000 0.00 0.00 0.00 4.20
522 1813 2.503356 AGCCCATGAATCTTTCGTCTCT 59.497 45.455 0.00 0.00 0.00 3.10
531 1822 8.920665 CATGAATCTTTCGTCTCTTCATATACC 58.079 37.037 0.00 0.00 35.41 2.73
533 1824 6.879276 ATCTTTCGTCTCTTCATATACCGA 57.121 37.500 0.00 0.00 0.00 4.69
537 1828 5.608676 TCGTCTCTTCATATACCGACATC 57.391 43.478 0.00 0.00 0.00 3.06
539 1830 4.215613 CGTCTCTTCATATACCGACATCCA 59.784 45.833 0.00 0.00 0.00 3.41
567 1858 6.293845 GGATCATCTTCACATCAATTGCCTAC 60.294 42.308 0.00 0.00 0.00 3.18
577 1868 3.832276 TCAATTGCCTACAAAACATCGC 58.168 40.909 0.00 0.00 39.77 4.58
578 1869 3.254411 TCAATTGCCTACAAAACATCGCA 59.746 39.130 0.00 0.00 39.77 5.10
579 1870 3.932545 ATTGCCTACAAAACATCGCAA 57.067 38.095 0.00 0.00 39.77 4.85
580 1871 3.717400 TTGCCTACAAAACATCGCAAA 57.283 38.095 0.00 0.00 33.60 3.68
581 1872 3.717400 TGCCTACAAAACATCGCAAAA 57.283 38.095 0.00 0.00 0.00 2.44
582 1873 3.376540 TGCCTACAAAACATCGCAAAAC 58.623 40.909 0.00 0.00 0.00 2.43
583 1874 2.403698 GCCTACAAAACATCGCAAAACG 59.596 45.455 0.00 0.00 45.62 3.60
584 1875 2.977169 CCTACAAAACATCGCAAAACGG 59.023 45.455 0.00 0.00 43.89 4.44
585 1876 1.846541 ACAAAACATCGCAAAACGGG 58.153 45.000 0.00 0.00 43.89 5.28
586 1877 1.135333 ACAAAACATCGCAAAACGGGT 59.865 42.857 0.00 0.00 43.89 5.28
587 1878 2.197577 CAAAACATCGCAAAACGGGTT 58.802 42.857 0.00 0.00 43.89 4.11
588 1879 2.588027 AAACATCGCAAAACGGGTTT 57.412 40.000 0.00 0.00 41.52 3.27
592 1883 1.265635 CATCGCAAAACGGGTTTCTCA 59.734 47.619 0.00 0.00 43.89 3.27
598 1889 3.694566 GCAAAACGGGTTTCTCATCCTAT 59.305 43.478 0.00 0.00 31.45 2.57
602 1893 5.437191 AACGGGTTTCTCATCCTATCTTT 57.563 39.130 0.00 0.00 0.00 2.52
614 1905 8.976353 TCTCATCCTATCTTTATATCAAGAGGC 58.024 37.037 5.62 0.00 36.22 4.70
618 1909 7.911651 TCCTATCTTTATATCAAGAGGCCAAG 58.088 38.462 5.01 0.00 36.22 3.61
620 1911 8.160106 CCTATCTTTATATCAAGAGGCCAAGTT 58.840 37.037 5.01 0.00 36.22 2.66
631 1922 1.413812 AGGCCAAGTTCAAAAAGGCAG 59.586 47.619 5.01 0.00 46.96 4.85
632 1923 1.412343 GGCCAAGTTCAAAAAGGCAGA 59.588 47.619 0.00 0.00 46.96 4.26
633 1924 2.037641 GGCCAAGTTCAAAAAGGCAGAT 59.962 45.455 0.00 0.00 46.96 2.90
634 1925 3.062042 GCCAAGTTCAAAAAGGCAGATG 58.938 45.455 0.00 0.00 44.59 2.90
639 1930 6.315891 CCAAGTTCAAAAAGGCAGATGAAAAA 59.684 34.615 0.00 0.00 33.93 1.94
642 1933 8.510243 AGTTCAAAAAGGCAGATGAAAAATTT 57.490 26.923 0.00 0.00 33.93 1.82
647 1938 8.839343 CAAAAAGGCAGATGAAAAATTTAGGTT 58.161 29.630 0.00 0.00 0.00 3.50
665 1956 0.757512 TTGCATGGGTGTGTTGCATT 59.242 45.000 0.00 0.00 45.04 3.56
666 1957 1.625511 TGCATGGGTGTGTTGCATTA 58.374 45.000 0.00 0.00 41.18 1.90
672 1963 4.000331 TGGGTGTGTTGCATTATTTTGG 58.000 40.909 0.00 0.00 0.00 3.28
673 1964 3.389329 TGGGTGTGTTGCATTATTTTGGT 59.611 39.130 0.00 0.00 0.00 3.67
681 1972 9.553064 TGTGTTGCATTATTTTGGTTTTATTCT 57.447 25.926 0.00 0.00 0.00 2.40
697 1988 9.745880 GGTTTTATTCTAGACTCGTTGATGATA 57.254 33.333 0.00 0.00 0.00 2.15
705 1996 9.999660 TCTAGACTCGTTGATGATATTAGTAGT 57.000 33.333 0.00 0.00 0.00 2.73
707 1998 7.877003 AGACTCGTTGATGATATTAGTAGTGG 58.123 38.462 0.00 0.00 0.00 4.00
708 1999 7.720074 AGACTCGTTGATGATATTAGTAGTGGA 59.280 37.037 0.00 0.00 0.00 4.02
709 2000 8.234136 ACTCGTTGATGATATTAGTAGTGGAA 57.766 34.615 0.00 0.00 0.00 3.53
713 2004 8.765219 CGTTGATGATATTAGTAGTGGAAAAGG 58.235 37.037 0.00 0.00 0.00 3.11
714 2005 9.614792 GTTGATGATATTAGTAGTGGAAAAGGT 57.385 33.333 0.00 0.00 0.00 3.50
729 2020 7.041576 AGTGGAAAAGGTAAAGTTTGTATCGAC 60.042 37.037 0.00 0.00 0.00 4.20
742 2033 7.088905 AGTTTGTATCGACTATGAGACGTTTT 58.911 34.615 0.00 0.00 35.10 2.43
744 2035 6.864560 TGTATCGACTATGAGACGTTTTTG 57.135 37.500 0.00 0.00 35.10 2.44
747 2038 6.575083 ATCGACTATGAGACGTTTTTGATG 57.425 37.500 0.00 0.00 35.10 3.07
748 2039 5.705902 TCGACTATGAGACGTTTTTGATGA 58.294 37.500 0.00 0.00 35.10 2.92
749 2040 6.330278 TCGACTATGAGACGTTTTTGATGAT 58.670 36.000 0.00 0.00 35.10 2.45
750 2041 6.811665 TCGACTATGAGACGTTTTTGATGATT 59.188 34.615 0.00 0.00 35.10 2.57
751 2042 7.009265 TCGACTATGAGACGTTTTTGATGATTC 59.991 37.037 0.00 0.00 35.10 2.52
752 2043 7.308782 ACTATGAGACGTTTTTGATGATTCC 57.691 36.000 0.00 0.00 0.00 3.01
753 2044 6.878923 ACTATGAGACGTTTTTGATGATTCCA 59.121 34.615 0.00 0.00 0.00 3.53
768 2059 4.880759 TGATTCCATCATTTGTGCGTTTT 58.119 34.783 0.00 0.00 33.59 2.43
769 2060 5.295950 TGATTCCATCATTTGTGCGTTTTT 58.704 33.333 0.00 0.00 33.59 1.94
770 2061 5.177142 TGATTCCATCATTTGTGCGTTTTTG 59.823 36.000 0.00 0.00 33.59 2.44
771 2062 4.052159 TCCATCATTTGTGCGTTTTTGT 57.948 36.364 0.00 0.00 0.00 2.83
772 2063 4.437239 TCCATCATTTGTGCGTTTTTGTT 58.563 34.783 0.00 0.00 0.00 2.83
773 2064 4.872691 TCCATCATTTGTGCGTTTTTGTTT 59.127 33.333 0.00 0.00 0.00 2.83
774 2065 5.352569 TCCATCATTTGTGCGTTTTTGTTTT 59.647 32.000 0.00 0.00 0.00 2.43
775 2066 5.676310 CCATCATTTGTGCGTTTTTGTTTTC 59.324 36.000 0.00 0.00 0.00 2.29
776 2067 4.875697 TCATTTGTGCGTTTTTGTTTTCG 58.124 34.783 0.00 0.00 0.00 3.46
777 2068 4.386049 TCATTTGTGCGTTTTTGTTTTCGT 59.614 33.333 0.00 0.00 0.00 3.85
779 2070 4.710528 TTGTGCGTTTTTGTTTTCGTTT 57.289 31.818 0.00 0.00 0.00 3.60
780 2071 4.295133 TGTGCGTTTTTGTTTTCGTTTC 57.705 36.364 0.00 0.00 0.00 2.78
783 2074 3.424529 TGCGTTTTTGTTTTCGTTTCGTT 59.575 34.783 0.00 0.00 0.00 3.85
784 2075 4.001925 GCGTTTTTGTTTTCGTTTCGTTC 58.998 39.130 0.00 0.00 0.00 3.95
785 2076 4.548331 CGTTTTTGTTTTCGTTTCGTTCC 58.452 39.130 0.00 0.00 0.00 3.62
788 2079 3.408288 TTGTTTTCGTTTCGTTCCTGG 57.592 42.857 0.00 0.00 0.00 4.45
789 2080 2.630158 TGTTTTCGTTTCGTTCCTGGA 58.370 42.857 0.00 0.00 0.00 3.86
790 2081 2.610374 TGTTTTCGTTTCGTTCCTGGAG 59.390 45.455 0.00 0.00 0.00 3.86
800 2416 1.069906 CGTTCCTGGAGCTTTTCGTTG 60.070 52.381 8.95 0.00 0.00 4.10
804 2420 0.947244 CTGGAGCTTTTCGTTGCAGT 59.053 50.000 0.00 0.00 37.48 4.40
806 2422 0.944386 GGAGCTTTTCGTTGCAGTCA 59.056 50.000 0.00 0.00 0.00 3.41
807 2423 1.069636 GGAGCTTTTCGTTGCAGTCAG 60.070 52.381 0.00 0.00 0.00 3.51
808 2424 1.599542 GAGCTTTTCGTTGCAGTCAGT 59.400 47.619 0.00 0.00 0.00 3.41
810 2426 1.334149 GCTTTTCGTTGCAGTCAGTCC 60.334 52.381 0.00 0.00 0.00 3.85
811 2427 2.213499 CTTTTCGTTGCAGTCAGTCCT 58.787 47.619 0.00 0.00 0.00 3.85
814 2430 0.315251 TCGTTGCAGTCAGTCCTGAG 59.685 55.000 0.00 0.00 40.75 3.35
815 2431 0.315251 CGTTGCAGTCAGTCCTGAGA 59.685 55.000 0.00 0.00 40.75 3.27
816 2432 1.067283 CGTTGCAGTCAGTCCTGAGAT 60.067 52.381 0.00 0.00 40.75 2.75
817 2433 2.344950 GTTGCAGTCAGTCCTGAGATG 58.655 52.381 0.00 1.62 40.75 2.90
818 2434 0.900421 TGCAGTCAGTCCTGAGATGG 59.100 55.000 0.00 0.00 40.75 3.51
819 2435 0.461693 GCAGTCAGTCCTGAGATGGC 60.462 60.000 0.00 0.00 40.75 4.40
820 2436 0.900421 CAGTCAGTCCTGAGATGGCA 59.100 55.000 0.00 0.00 40.75 4.92
822 2438 0.107945 GTCAGTCCTGAGATGGCACC 60.108 60.000 0.00 0.00 40.75 5.01
823 2439 0.545071 TCAGTCCTGAGATGGCACCA 60.545 55.000 0.00 0.00 34.14 4.17
824 2440 0.325933 CAGTCCTGAGATGGCACCAA 59.674 55.000 0.00 0.00 0.00 3.67
825 2441 1.064906 CAGTCCTGAGATGGCACCAAT 60.065 52.381 0.00 0.00 0.00 3.16
932 2551 4.161295 ATAGCAAGCCGCCGCAGA 62.161 61.111 0.00 0.00 44.04 4.26
1310 2999 2.260434 GTGCTGCTGGCCATGTTG 59.740 61.111 5.51 0.00 40.92 3.33
1449 4113 7.667219 ACCCAGGATTTGCTATGATAGTTATTG 59.333 37.037 0.92 0.00 0.00 1.90
1474 5827 1.963338 GGTCCTGCAGTGCTGTGTC 60.963 63.158 17.60 8.00 0.00 3.67
1515 5979 4.385825 TCTACCACTGTCACAAATGTTCC 58.614 43.478 0.00 0.00 0.00 3.62
1518 5982 2.692557 CCACTGTCACAAATGTTCCCAA 59.307 45.455 0.00 0.00 0.00 4.12
1522 5986 2.356382 TGTCACAAATGTTCCCAACGAC 59.644 45.455 0.00 0.00 0.00 4.34
1561 6030 4.607239 CTCCCCTGAGGTGTTAGTTACTA 58.393 47.826 0.00 0.00 34.80 1.82
1563 6032 4.091549 CCCCTGAGGTGTTAGTTACTACA 58.908 47.826 0.00 0.00 0.00 2.74
1579 6048 6.263617 AGTTACTACAGTGCTATCTCCTTAGC 59.736 42.308 0.00 0.00 43.98 3.09
1589 6058 1.156736 TCTCCTTAGCGTTGCAAAGC 58.843 50.000 27.02 27.02 0.00 3.51
1680 6154 7.575332 TTTTTATTTGCTTCGCTTAATGTCC 57.425 32.000 0.00 0.00 0.00 4.02
1707 6193 3.201290 CTGCCTCACAGGAATGTATGTC 58.799 50.000 0.00 0.00 43.19 3.06
1803 6289 7.718314 AGTGCTTATAAATCATGCTCAAGATCA 59.282 33.333 0.00 0.00 0.00 2.92
1826 6314 3.446873 GGCACATTCCATGTTGTTATCCA 59.553 43.478 0.00 0.00 42.70 3.41
2001 6493 9.019656 TGTAATTGCTGGTGTTGATAATAAACT 57.980 29.630 0.00 0.00 0.00 2.66
2002 6494 9.503427 GTAATTGCTGGTGTTGATAATAAACTC 57.497 33.333 0.00 0.00 0.00 3.01
2023 6520 7.790823 ACTCAACAAAATAAAAGCTTGCAAT 57.209 28.000 0.00 0.00 0.00 3.56
2136 6648 5.614308 TCACAACATCTTCAGTGTTCATCT 58.386 37.500 0.00 0.00 37.69 2.90
2322 6922 5.387752 GCAAAACGCTTTTTAGCTTCTCATG 60.388 40.000 0.02 0.00 37.77 3.07
2365 6965 9.362151 TCATTATTCCCTAAATTGTATGGAACC 57.638 33.333 0.00 0.00 37.88 3.62
2389 6995 4.663334 AGATCCCATTGGTCATGATCATG 58.337 43.478 26.79 26.79 40.09 3.07
2391 6997 1.616865 CCCATTGGTCATGATCATGGC 59.383 52.381 30.54 29.55 42.41 4.40
2525 7135 5.808366 TGGCCTATCAGAACAAGGTATAG 57.192 43.478 3.32 0.00 32.67 1.31
2579 7192 6.096987 TGGTGCTTAATGTTTGTTTACCTTCA 59.903 34.615 0.00 0.00 0.00 3.02
2606 7223 9.631257 TGATACACATGTCATTCCATTTCTTAT 57.369 29.630 0.00 0.00 0.00 1.73
2695 7316 2.443416 GGAGGCCAAATTTACTCGGTT 58.557 47.619 5.01 0.00 0.00 4.44
2797 7423 8.623030 CCTTACCTATACTTGAGTAGTTGAGTC 58.377 40.741 0.00 0.00 38.33 3.36
2874 7501 4.547532 CAAGCTTGTACTCACTTAGTCGT 58.452 43.478 18.65 0.00 39.80 4.34
2885 7512 1.003223 ACTTAGTCGTTTGCGGTTTGC 60.003 47.619 0.00 0.00 46.70 3.68
2945 7572 1.338484 TGAGTGCAATCTGGCTCTGTC 60.338 52.381 16.05 0.00 37.71 3.51
2961 7588 2.100749 TCTGTCGAGTGCTGAGAAACAA 59.899 45.455 0.00 0.00 0.00 2.83
2971 7598 2.163815 GCTGAGAAACAATGAGCATGCT 59.836 45.455 22.92 22.92 0.00 3.79
3221 8063 8.469309 ACATAGTTTATTTAATGCATGAGGCT 57.531 30.769 0.00 0.00 45.15 4.58
3291 8155 5.625311 GCTGCTTATTTTGTAGTTGTGACAC 59.375 40.000 0.00 0.00 0.00 3.67
3292 8156 6.685527 TGCTTATTTTGTAGTTGTGACACA 57.314 33.333 3.56 3.56 0.00 3.72
3300 8164 5.906113 TGTAGTTGTGACACAAAATGGTT 57.094 34.783 22.16 7.14 40.15 3.67
3666 8541 8.405531 TGTTTCTTTTGGTTGAGAAATAGACAG 58.594 33.333 2.35 0.00 42.08 3.51
3749 8631 2.746362 CAACCTCTCTTGTGATGGCTTC 59.254 50.000 0.00 0.00 0.00 3.86
3751 8633 2.575279 ACCTCTCTTGTGATGGCTTCAT 59.425 45.455 6.35 0.00 36.54 2.57
4208 9091 0.947244 CTGGTGACAAACTGCCACTC 59.053 55.000 0.00 0.00 42.06 3.51
4350 9236 4.579869 ACGTTGCTTGGAATAGATTCTGT 58.420 39.130 0.00 0.00 37.00 3.41
4359 9245 5.491070 TGGAATAGATTCTGTTGACACCAG 58.509 41.667 0.00 0.00 37.00 4.00
4407 9293 9.361315 ACAACTTAAAATAGTTTTGGTGTTCAC 57.639 29.630 6.31 0.00 36.24 3.18
4409 9295 7.764331 ACTTAAAATAGTTTTGGTGTTCACGT 58.236 30.769 0.00 0.00 34.19 4.49
4474 9360 2.096069 CGACTATGGCATATGCTTGTGC 60.096 50.000 26.12 12.18 41.70 4.57
4589 9479 3.002042 CGGTGTAGTAGTGGATAGTGTCG 59.998 52.174 0.00 0.00 0.00 4.35
4696 11388 6.854496 ACATGTCTGTAGAAACGCTAAAAA 57.146 33.333 0.00 0.00 32.49 1.94
4762 11454 9.852091 ATGAAGATACAAAGCAGATTTTCTTTC 57.148 29.630 0.00 0.00 29.60 2.62
4825 11517 3.795041 CTCCCCTCTGCCTGGCTG 61.795 72.222 21.03 19.66 0.00 4.85
4908 11600 6.032956 TCAATGGTACTGATGTTTCTACGT 57.967 37.500 0.00 0.00 0.00 3.57
4909 11601 5.867174 TCAATGGTACTGATGTTTCTACGTG 59.133 40.000 0.00 0.00 0.00 4.49
4911 11603 3.827876 TGGTACTGATGTTTCTACGTGGA 59.172 43.478 0.00 0.00 0.00 4.02
4912 11604 4.464951 TGGTACTGATGTTTCTACGTGGAT 59.535 41.667 1.20 0.00 0.00 3.41
4913 11605 5.046878 TGGTACTGATGTTTCTACGTGGATT 60.047 40.000 1.20 0.00 0.00 3.01
4914 11606 6.153170 TGGTACTGATGTTTCTACGTGGATTA 59.847 38.462 1.20 0.00 0.00 1.75
4917 11609 9.095065 GTACTGATGTTTCTACGTGGATTAATT 57.905 33.333 1.20 0.00 0.00 1.40
4918 11610 8.197988 ACTGATGTTTCTACGTGGATTAATTC 57.802 34.615 1.20 0.00 0.00 2.17
4924 11616 9.887406 TGTTTCTACGTGGATTAATTCTTTTTC 57.113 29.630 1.20 0.00 0.00 2.29
4931 11623 9.810545 ACGTGGATTAATTCTTTTTCTTTTTGA 57.189 25.926 0.00 0.00 0.00 2.69
4934 11626 9.810545 TGGATTAATTCTTTTTCTTTTTGACGT 57.189 25.926 0.00 0.00 0.00 4.34
5070 11903 2.698797 TCCCTTGATATTGGTCGTCTCC 59.301 50.000 0.00 0.00 0.00 3.71
5188 12024 3.911964 AGCAACGAAAATAATTGACGTGC 59.088 39.130 0.00 0.00 34.38 5.34
5243 12082 5.669477 GACAGAGCAAGGAGTTATGATCTT 58.331 41.667 0.00 0.00 40.09 2.40
5244 12083 6.059787 ACAGAGCAAGGAGTTATGATCTTT 57.940 37.500 0.00 0.00 40.09 2.52
5245 12084 7.187824 ACAGAGCAAGGAGTTATGATCTTTA 57.812 36.000 0.00 0.00 40.09 1.85
5246 12085 7.044798 ACAGAGCAAGGAGTTATGATCTTTAC 58.955 38.462 0.00 0.00 40.09 2.01
5247 12086 7.044181 CAGAGCAAGGAGTTATGATCTTTACA 58.956 38.462 0.00 0.00 40.09 2.41
5248 12087 7.010923 CAGAGCAAGGAGTTATGATCTTTACAC 59.989 40.741 0.00 0.00 40.09 2.90
5249 12088 5.812642 AGCAAGGAGTTATGATCTTTACACG 59.187 40.000 0.00 0.00 0.00 4.49
5250 12089 5.810587 GCAAGGAGTTATGATCTTTACACGA 59.189 40.000 0.00 0.00 0.00 4.35
5251 12090 6.237861 GCAAGGAGTTATGATCTTTACACGAC 60.238 42.308 0.00 0.00 0.00 4.34
5252 12091 6.525578 AGGAGTTATGATCTTTACACGACA 57.474 37.500 0.00 0.00 0.00 4.35
5253 12092 6.931838 AGGAGTTATGATCTTTACACGACAA 58.068 36.000 0.00 0.00 0.00 3.18
5254 12093 7.383687 AGGAGTTATGATCTTTACACGACAAA 58.616 34.615 0.00 0.00 0.00 2.83
5255 12094 7.545965 AGGAGTTATGATCTTTACACGACAAAG 59.454 37.037 0.00 0.00 34.87 2.77
5256 12095 7.061752 AGTTATGATCTTTACACGACAAAGC 57.938 36.000 0.00 0.00 33.82 3.51
5257 12096 6.649141 AGTTATGATCTTTACACGACAAAGCA 59.351 34.615 0.00 0.00 33.82 3.91
5258 12097 5.940192 ATGATCTTTACACGACAAAGCAA 57.060 34.783 0.00 0.00 33.82 3.91
5259 12098 5.342806 TGATCTTTACACGACAAAGCAAG 57.657 39.130 0.00 0.00 33.82 4.01
5260 12099 4.213270 TGATCTTTACACGACAAAGCAAGG 59.787 41.667 0.00 0.00 33.82 3.61
5261 12100 3.799366 TCTTTACACGACAAAGCAAGGA 58.201 40.909 0.00 0.00 33.82 3.36
5262 12101 3.558418 TCTTTACACGACAAAGCAAGGAC 59.442 43.478 0.00 0.00 33.82 3.85
5263 12102 2.902705 TACACGACAAAGCAAGGACT 57.097 45.000 0.00 0.00 0.00 3.85
5264 12103 2.038387 ACACGACAAAGCAAGGACTT 57.962 45.000 0.00 0.00 0.00 3.01
5265 12104 3.188159 ACACGACAAAGCAAGGACTTA 57.812 42.857 0.00 0.00 0.00 2.24
5266 12105 3.740115 ACACGACAAAGCAAGGACTTAT 58.260 40.909 0.00 0.00 0.00 1.73
5267 12106 3.498397 ACACGACAAAGCAAGGACTTATG 59.502 43.478 0.00 0.00 0.00 1.90
5268 12107 3.745975 CACGACAAAGCAAGGACTTATGA 59.254 43.478 0.00 0.00 0.00 2.15
5269 12108 4.393062 CACGACAAAGCAAGGACTTATGAT 59.607 41.667 0.00 0.00 0.00 2.45
5270 12109 4.631813 ACGACAAAGCAAGGACTTATGATC 59.368 41.667 0.00 0.00 0.00 2.92
5271 12110 4.872691 CGACAAAGCAAGGACTTATGATCT 59.127 41.667 0.00 0.00 0.00 2.75
5276 12115 5.426689 AGCAAGGACTTATGATCTTCACA 57.573 39.130 0.00 0.00 0.00 3.58
5278 12117 5.046014 AGCAAGGACTTATGATCTTCACACT 60.046 40.000 0.00 0.00 0.00 3.55
5280 12119 6.401394 CAAGGACTTATGATCTTCACACTGA 58.599 40.000 0.00 0.00 0.00 3.41
5337 12176 4.295119 GTCGGTGTGGTGGCGAGT 62.295 66.667 0.00 0.00 0.00 4.18
5358 12197 5.070685 AGTACCCAACTCATGTCTTTTTCC 58.929 41.667 0.00 0.00 30.33 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.871463 TCTGCTAAGAACTTCCTAGTGTTAAAC 59.129 37.037 0.00 0.00 34.01 2.01
25 26 7.959175 TCTGCTAAGAACTTCCTAGTGTTAAA 58.041 34.615 0.00 0.00 34.01 1.52
26 27 7.534723 TCTGCTAAGAACTTCCTAGTGTTAA 57.465 36.000 0.00 0.00 34.01 2.01
27 28 7.534723 TTCTGCTAAGAACTTCCTAGTGTTA 57.465 36.000 0.00 0.00 37.51 2.41
28 29 6.420913 TTCTGCTAAGAACTTCCTAGTGTT 57.579 37.500 0.00 0.00 37.51 3.32
30 31 7.821846 AGATTTTCTGCTAAGAACTTCCTAGTG 59.178 37.037 0.00 0.00 42.20 2.74
31 32 7.912719 AGATTTTCTGCTAAGAACTTCCTAGT 58.087 34.615 0.00 0.00 42.20 2.57
33 34 9.574516 AAAAGATTTTCTGCTAAGAACTTCCTA 57.425 29.630 0.00 0.00 42.20 2.94
34 35 8.470657 AAAAGATTTTCTGCTAAGAACTTCCT 57.529 30.769 0.00 0.00 42.20 3.36
35 36 8.352942 TGAAAAGATTTTCTGCTAAGAACTTCC 58.647 33.333 16.62 0.00 45.14 3.46
36 37 9.175060 GTGAAAAGATTTTCTGCTAAGAACTTC 57.825 33.333 16.62 0.00 45.14 3.01
37 38 8.138074 GGTGAAAAGATTTTCTGCTAAGAACTT 58.862 33.333 16.62 0.00 45.14 2.66
38 39 7.503902 AGGTGAAAAGATTTTCTGCTAAGAACT 59.496 33.333 16.62 2.81 45.14 3.01
39 40 7.592903 CAGGTGAAAAGATTTTCTGCTAAGAAC 59.407 37.037 16.62 6.14 45.14 3.01
89 90 5.776358 AGGGTTTCATCTTGCCCATTATTA 58.224 37.500 0.00 0.00 43.42 0.98
95 96 1.428912 AGAAGGGTTTCATCTTGCCCA 59.571 47.619 0.00 0.00 43.42 5.36
125 126 4.488126 TTGAGAAAAAGTGCAATCTCGG 57.512 40.909 0.00 0.00 40.91 4.63
126 127 6.810888 TTTTTGAGAAAAAGTGCAATCTCG 57.189 33.333 0.00 0.00 40.91 4.04
154 156 5.726980 TCTTTTTGGGAATGATTCTGTGG 57.273 39.130 5.03 0.00 0.00 4.17
157 159 9.745880 CATCTATTCTTTTTGGGAATGATTCTG 57.254 33.333 5.03 0.00 35.40 3.02
182 184 6.037500 CGCACCTCATCAAAGAAAGATATTCA 59.962 38.462 0.00 0.00 0.00 2.57
189 191 3.070018 AGACGCACCTCATCAAAGAAAG 58.930 45.455 0.00 0.00 0.00 2.62
272 274 2.775911 TTTGAGTCCAGATGCTCCAG 57.224 50.000 0.00 0.00 0.00 3.86
292 294 3.071874 TGCGGAAATCCTTGTCATTCT 57.928 42.857 0.00 0.00 0.00 2.40
302 304 1.401905 GAGGTGACATTGCGGAAATCC 59.598 52.381 0.00 0.00 0.00 3.01
318 320 1.352352 CCACCCTTGAACATGAGAGGT 59.648 52.381 0.00 0.00 0.00 3.85
321 323 1.545428 GCACCACCCTTGAACATGAGA 60.545 52.381 0.00 0.00 0.00 3.27
357 359 0.961019 GCAATTGTGGTCTTGAGGCA 59.039 50.000 7.40 0.00 0.00 4.75
360 362 1.664016 GCACGCAATTGTGGTCTTGAG 60.664 52.381 22.27 5.14 40.26 3.02
367 369 2.801996 CGCTGCACGCAATTGTGG 60.802 61.111 22.27 12.43 40.26 4.17
383 1665 0.459237 TGTTTTGTTGGGCTTGCACG 60.459 50.000 0.00 0.00 0.00 5.34
391 1673 4.261114 GGCAATGACAATTGTTTTGTTGGG 60.261 41.667 24.38 9.45 44.34 4.12
393 1675 5.481200 TGGCAATGACAATTGTTTTGTTG 57.519 34.783 24.38 20.11 44.34 3.33
394 1676 4.575645 CCTGGCAATGACAATTGTTTTGTT 59.424 37.500 24.38 12.17 44.34 2.83
399 1681 3.233507 AGTCCTGGCAATGACAATTGTT 58.766 40.909 13.36 0.00 44.34 2.83
400 1682 2.880443 AGTCCTGGCAATGACAATTGT 58.120 42.857 11.78 11.78 44.34 2.71
401 1683 4.012374 AGTAGTCCTGGCAATGACAATTG 58.988 43.478 16.38 3.24 45.13 2.32
405 1687 4.290093 AGATAGTAGTCCTGGCAATGACA 58.710 43.478 16.38 0.00 33.89 3.58
414 1699 2.688446 TGCAACCGAGATAGTAGTCCTG 59.312 50.000 0.00 0.00 0.00 3.86
423 1708 3.000041 GACACAATGTGCAACCGAGATA 59.000 45.455 14.01 0.00 36.98 1.98
433 1718 3.939066 AGGTTAGTAGGACACAATGTGC 58.061 45.455 14.01 6.29 39.13 4.57
449 1734 4.142038 GGTCAAAGGAGCTTTCAAGGTTA 58.858 43.478 0.00 0.00 38.50 2.85
457 1742 2.222027 CTTGTCGGTCAAAGGAGCTTT 58.778 47.619 0.00 0.00 39.38 3.51
515 1806 4.454847 GGATGTCGGTATATGAAGAGACGA 59.545 45.833 0.00 0.00 0.00 4.20
519 1810 6.603599 TCCTATGGATGTCGGTATATGAAGAG 59.396 42.308 0.00 0.00 0.00 2.85
522 1813 6.895204 TGATCCTATGGATGTCGGTATATGAA 59.105 38.462 3.57 0.00 43.27 2.57
531 1822 5.167121 GTGAAGATGATCCTATGGATGTCG 58.833 45.833 3.57 0.00 43.27 4.35
533 1824 6.271624 TGATGTGAAGATGATCCTATGGATGT 59.728 38.462 3.57 0.00 43.27 3.06
537 1828 7.575155 GCAATTGATGTGAAGATGATCCTATGG 60.575 40.741 10.34 0.00 0.00 2.74
539 1830 6.433404 GGCAATTGATGTGAAGATGATCCTAT 59.567 38.462 10.34 0.00 0.00 2.57
567 1858 1.846541 ACCCGTTTTGCGATGTTTTG 58.153 45.000 0.00 0.00 44.77 2.44
577 1868 5.186198 AGATAGGATGAGAAACCCGTTTTG 58.814 41.667 0.00 0.00 32.11 2.44
578 1869 5.437191 AGATAGGATGAGAAACCCGTTTT 57.563 39.130 0.00 0.00 32.11 2.43
579 1870 5.437191 AAGATAGGATGAGAAACCCGTTT 57.563 39.130 0.00 0.00 35.14 3.60
580 1871 5.437191 AAAGATAGGATGAGAAACCCGTT 57.563 39.130 0.00 0.00 0.00 4.44
581 1872 6.749036 ATAAAGATAGGATGAGAAACCCGT 57.251 37.500 0.00 0.00 0.00 5.28
582 1873 8.531982 TGATATAAAGATAGGATGAGAAACCCG 58.468 37.037 0.00 0.00 0.00 5.28
588 1879 8.976353 GCCTCTTGATATAAAGATAGGATGAGA 58.024 37.037 10.95 0.00 35.67 3.27
592 1883 8.454859 TTGGCCTCTTGATATAAAGATAGGAT 57.545 34.615 10.95 0.00 35.67 3.24
598 1889 6.957631 TGAACTTGGCCTCTTGATATAAAGA 58.042 36.000 3.32 2.38 34.97 2.52
602 1893 7.122650 CCTTTTTGAACTTGGCCTCTTGATATA 59.877 37.037 3.32 0.00 0.00 0.86
610 1901 1.412343 TGCCTTTTTGAACTTGGCCTC 59.588 47.619 3.32 0.00 42.62 4.70
611 1902 1.413812 CTGCCTTTTTGAACTTGGCCT 59.586 47.619 3.32 0.00 42.62 5.19
613 1904 2.888834 TCTGCCTTTTTGAACTTGGC 57.111 45.000 0.00 0.00 43.49 4.52
614 1905 4.589216 TCATCTGCCTTTTTGAACTTGG 57.411 40.909 0.00 0.00 0.00 3.61
618 1909 9.868389 CTAAATTTTTCATCTGCCTTTTTGAAC 57.132 29.630 0.00 0.00 0.00 3.18
620 1911 8.210265 ACCTAAATTTTTCATCTGCCTTTTTGA 58.790 29.630 0.00 0.00 0.00 2.69
631 1922 6.092533 CACCCATGCAACCTAAATTTTTCATC 59.907 38.462 0.00 0.00 0.00 2.92
632 1923 5.939296 CACCCATGCAACCTAAATTTTTCAT 59.061 36.000 0.00 0.00 0.00 2.57
633 1924 5.163258 ACACCCATGCAACCTAAATTTTTCA 60.163 36.000 0.00 0.00 0.00 2.69
634 1925 5.179182 CACACCCATGCAACCTAAATTTTTC 59.821 40.000 0.00 0.00 0.00 2.29
639 1930 2.888212 ACACACCCATGCAACCTAAAT 58.112 42.857 0.00 0.00 0.00 1.40
642 1933 1.614996 CAACACACCCATGCAACCTA 58.385 50.000 0.00 0.00 0.00 3.08
666 1957 9.280174 TCAACGAGTCTAGAATAAAACCAAAAT 57.720 29.630 0.00 0.00 0.00 1.82
681 1972 9.000486 CCACTACTAATATCATCAACGAGTCTA 58.000 37.037 0.00 0.00 0.00 2.59
684 1975 7.818997 TCCACTACTAATATCATCAACGAGT 57.181 36.000 0.00 0.00 0.00 4.18
688 1979 9.614792 ACCTTTTCCACTACTAATATCATCAAC 57.385 33.333 0.00 0.00 0.00 3.18
697 1988 9.636789 ACAAACTTTACCTTTTCCACTACTAAT 57.363 29.630 0.00 0.00 0.00 1.73
703 1994 6.993902 TCGATACAAACTTTACCTTTTCCACT 59.006 34.615 0.00 0.00 0.00 4.00
704 1995 7.041576 AGTCGATACAAACTTTACCTTTTCCAC 60.042 37.037 0.00 0.00 0.00 4.02
705 1996 6.993902 AGTCGATACAAACTTTACCTTTTCCA 59.006 34.615 0.00 0.00 0.00 3.53
707 1998 9.968743 CATAGTCGATACAAACTTTACCTTTTC 57.031 33.333 0.00 0.00 0.00 2.29
708 1999 9.715121 TCATAGTCGATACAAACTTTACCTTTT 57.285 29.630 0.00 0.00 0.00 2.27
709 2000 9.367444 CTCATAGTCGATACAAACTTTACCTTT 57.633 33.333 0.00 0.00 0.00 3.11
713 2004 7.695618 ACGTCTCATAGTCGATACAAACTTTAC 59.304 37.037 0.00 0.00 31.50 2.01
714 2005 7.755591 ACGTCTCATAGTCGATACAAACTTTA 58.244 34.615 0.00 0.00 31.50 1.85
717 2008 5.814764 ACGTCTCATAGTCGATACAAACT 57.185 39.130 0.00 0.00 31.50 2.66
722 2013 7.431376 TCATCAAAAACGTCTCATAGTCGATAC 59.569 37.037 0.00 0.00 31.50 2.24
729 2020 7.307493 TGGAATCATCAAAAACGTCTCATAG 57.693 36.000 0.00 0.00 0.00 2.23
747 2038 5.177327 ACAAAAACGCACAAATGATGGAATC 59.823 36.000 0.00 0.00 45.83 2.52
748 2039 5.055812 ACAAAAACGCACAAATGATGGAAT 58.944 33.333 0.00 0.00 0.00 3.01
749 2040 4.437239 ACAAAAACGCACAAATGATGGAA 58.563 34.783 0.00 0.00 0.00 3.53
750 2041 4.052159 ACAAAAACGCACAAATGATGGA 57.948 36.364 0.00 0.00 0.00 3.41
751 2042 4.792528 AACAAAAACGCACAAATGATGG 57.207 36.364 0.00 0.00 0.00 3.51
752 2043 5.389143 CGAAAACAAAAACGCACAAATGATG 59.611 36.000 0.00 0.00 0.00 3.07
753 2044 5.062809 ACGAAAACAAAAACGCACAAATGAT 59.937 32.000 0.00 0.00 0.00 2.45
756 2047 4.912528 ACGAAAACAAAAACGCACAAAT 57.087 31.818 0.00 0.00 0.00 2.32
760 2051 3.181551 ACGAAACGAAAACAAAAACGCAC 60.182 39.130 0.00 0.00 0.00 5.34
762 2053 3.604931 ACGAAACGAAAACAAAAACGC 57.395 38.095 0.00 0.00 0.00 4.84
763 2054 4.321480 AGGAACGAAACGAAAACAAAAACG 59.679 37.500 0.00 0.00 0.00 3.60
764 2055 5.443562 CCAGGAACGAAACGAAAACAAAAAC 60.444 40.000 0.00 0.00 0.00 2.43
765 2056 4.621886 CCAGGAACGAAACGAAAACAAAAA 59.378 37.500 0.00 0.00 0.00 1.94
766 2057 4.082895 TCCAGGAACGAAACGAAAACAAAA 60.083 37.500 0.00 0.00 0.00 2.44
768 2059 3.008330 TCCAGGAACGAAACGAAAACAA 58.992 40.909 0.00 0.00 0.00 2.83
769 2060 2.610374 CTCCAGGAACGAAACGAAAACA 59.390 45.455 0.00 0.00 0.00 2.83
770 2061 2.601504 GCTCCAGGAACGAAACGAAAAC 60.602 50.000 0.00 0.00 0.00 2.43
771 2062 1.600485 GCTCCAGGAACGAAACGAAAA 59.400 47.619 0.00 0.00 0.00 2.29
772 2063 1.202604 AGCTCCAGGAACGAAACGAAA 60.203 47.619 0.00 0.00 0.00 3.46
773 2064 0.391597 AGCTCCAGGAACGAAACGAA 59.608 50.000 0.00 0.00 0.00 3.85
774 2065 0.391597 AAGCTCCAGGAACGAAACGA 59.608 50.000 0.00 0.00 0.00 3.85
775 2066 1.226746 AAAGCTCCAGGAACGAAACG 58.773 50.000 0.00 0.00 0.00 3.60
776 2067 2.349532 CGAAAAGCTCCAGGAACGAAAC 60.350 50.000 0.00 0.00 0.00 2.78
777 2068 1.871039 CGAAAAGCTCCAGGAACGAAA 59.129 47.619 0.00 0.00 0.00 3.46
779 2070 0.391597 ACGAAAAGCTCCAGGAACGA 59.608 50.000 0.00 0.00 0.00 3.85
780 2071 1.069906 CAACGAAAAGCTCCAGGAACG 60.070 52.381 0.00 0.00 0.00 3.95
783 2074 0.179032 TGCAACGAAAAGCTCCAGGA 60.179 50.000 0.00 0.00 0.00 3.86
784 2075 0.239347 CTGCAACGAAAAGCTCCAGG 59.761 55.000 0.00 0.00 0.00 4.45
785 2076 0.947244 ACTGCAACGAAAAGCTCCAG 59.053 50.000 0.00 0.00 0.00 3.86
788 2079 1.599542 ACTGACTGCAACGAAAAGCTC 59.400 47.619 0.00 0.00 0.00 4.09
789 2080 1.599542 GACTGACTGCAACGAAAAGCT 59.400 47.619 0.00 0.00 0.00 3.74
790 2081 1.334149 GGACTGACTGCAACGAAAAGC 60.334 52.381 0.00 0.00 0.00 3.51
800 2416 0.461693 GCCATCTCAGGACTGACTGC 60.462 60.000 0.00 0.00 38.36 4.40
804 2420 0.545071 TGGTGCCATCTCAGGACTGA 60.545 55.000 1.61 1.61 38.06 3.41
806 2422 1.293062 ATTGGTGCCATCTCAGGACT 58.707 50.000 0.00 0.00 0.00 3.85
807 2423 1.747355 CAATTGGTGCCATCTCAGGAC 59.253 52.381 0.00 0.00 0.00 3.85
808 2424 1.634973 TCAATTGGTGCCATCTCAGGA 59.365 47.619 5.42 0.00 0.00 3.86
810 2426 3.284617 TGATCAATTGGTGCCATCTCAG 58.715 45.455 5.42 0.00 0.00 3.35
811 2427 3.369242 TGATCAATTGGTGCCATCTCA 57.631 42.857 5.42 0.00 0.00 3.27
814 2430 2.620115 ACGATGATCAATTGGTGCCATC 59.380 45.455 5.42 7.84 35.47 3.51
815 2431 2.359848 CACGATGATCAATTGGTGCCAT 59.640 45.455 5.42 0.00 0.00 4.40
816 2432 1.744522 CACGATGATCAATTGGTGCCA 59.255 47.619 5.42 0.00 0.00 4.92
817 2433 2.016318 TCACGATGATCAATTGGTGCC 58.984 47.619 5.42 0.00 0.00 5.01
818 2434 2.223340 GGTCACGATGATCAATTGGTGC 60.223 50.000 5.42 0.00 0.00 5.01
819 2435 2.030823 CGGTCACGATGATCAATTGGTG 59.969 50.000 5.42 2.06 44.60 4.17
820 2436 2.093711 TCGGTCACGATGATCAATTGGT 60.094 45.455 5.42 0.00 45.59 3.67
878 2494 4.675029 AAACGAGACGGGCCGGTG 62.675 66.667 31.78 18.29 0.00 4.94
932 2551 0.393537 GTGCTGGCTATTGGCTCTGT 60.394 55.000 1.98 0.00 41.46 3.41
1310 2999 8.719696 GCGTCTCGTATCGTATAATATGTTAAC 58.280 37.037 0.00 0.00 0.00 2.01
1322 3014 0.882042 GAGGGGCGTCTCGTATCGTA 60.882 60.000 0.00 0.00 0.00 3.43
1323 3015 2.124403 AGGGGCGTCTCGTATCGT 60.124 61.111 0.00 0.00 0.00 3.73
1324 3016 2.638154 GAGGGGCGTCTCGTATCG 59.362 66.667 0.00 0.00 0.00 2.92
1449 4113 0.955919 GCACTGCAGGACCCAGTAAC 60.956 60.000 19.93 0.00 41.34 2.50
1453 4117 2.359602 CAGCACTGCAGGACCCAG 60.360 66.667 19.93 1.55 36.41 4.45
1474 5827 5.467063 GGTAGAAGGTTTCAGACTTGACAAG 59.533 44.000 13.77 13.77 31.71 3.16
1515 5979 3.380479 TGTTCTCCAGTAAGTCGTTGG 57.620 47.619 0.00 0.00 0.00 3.77
1518 5982 2.353803 GCCATGTTCTCCAGTAAGTCGT 60.354 50.000 0.00 0.00 0.00 4.34
1561 6030 2.379972 ACGCTAAGGAGATAGCACTGT 58.620 47.619 7.06 0.00 46.94 3.55
1563 6032 2.482142 GCAACGCTAAGGAGATAGCACT 60.482 50.000 7.06 0.00 46.94 4.40
1589 6058 5.771469 TGAATTCAAACATACACAGCAAGG 58.229 37.500 5.45 0.00 0.00 3.61
1630 6100 6.263842 TGCAGAGAGAAAAACAGATCAAATGT 59.736 34.615 0.00 0.00 0.00 2.71
1680 6154 1.165907 TTCCTGTGAGGCAGCAAACG 61.166 55.000 0.00 0.00 43.71 3.60
1826 6314 6.769512 ACCATCTAAATGTCACAGTAACACT 58.230 36.000 0.00 0.00 0.00 3.55
1955 6447 5.590530 ACACATACCTTTCAGTGCAAAAA 57.409 34.783 0.00 0.00 35.47 1.94
1956 6448 6.701145 TTACACATACCTTTCAGTGCAAAA 57.299 33.333 0.00 0.00 35.47 2.44
1957 6449 6.892658 ATTACACATACCTTTCAGTGCAAA 57.107 33.333 0.00 0.00 35.47 3.68
2001 6493 8.654230 TGTATTGCAAGCTTTTATTTTGTTGA 57.346 26.923 4.94 0.00 0.00 3.18
2002 6494 9.372541 CTTGTATTGCAAGCTTTTATTTTGTTG 57.627 29.630 4.94 0.00 46.68 3.33
2023 6520 7.215696 CGAAAGCAAAACACAAAATCTTGTA 57.784 32.000 0.00 0.00 44.15 2.41
2111 6609 4.129380 TGAACACTGAAGATGTTGTGAGG 58.871 43.478 0.00 0.00 40.36 3.86
2112 6610 5.699915 AGATGAACACTGAAGATGTTGTGAG 59.300 40.000 0.00 0.00 40.36 3.51
2136 6648 2.892852 AGCAAACATAAAGGCAGCAGAA 59.107 40.909 0.00 0.00 0.00 3.02
2356 6956 4.351111 ACCAATGGGATCTAGGTTCCATAC 59.649 45.833 16.75 0.00 38.89 2.39
2365 6965 5.494390 TGATCATGACCAATGGGATCTAG 57.506 43.478 14.38 0.00 36.86 2.43
2389 6995 8.040727 ACTTCCAAATCAAATACTTAATTGGCC 58.959 33.333 0.00 0.00 36.61 5.36
2579 7192 8.529424 AAGAAATGGAATGACATGTGTATCAT 57.471 30.769 1.15 0.00 37.14 2.45
2695 7316 2.028112 CAGAATCGTTCCACCAAGAGGA 60.028 50.000 0.00 0.00 38.69 3.71
2797 7423 6.210078 CCCTAGAAGCTACTAAAAGATGTCG 58.790 44.000 0.00 0.00 0.00 4.35
2885 7512 6.015856 TGTGGTTAACATCCCAGTATGTTTTG 60.016 38.462 8.10 0.00 45.54 2.44
2945 7572 2.159734 GCTCATTGTTTCTCAGCACTCG 60.160 50.000 0.00 0.00 0.00 4.18
2971 7598 5.878116 ACACTAAAGCCGAATTAGCATAACA 59.122 36.000 3.03 0.00 34.42 2.41
2983 7610 6.071560 CCTGGTATATCATACACTAAAGCCGA 60.072 42.308 0.00 0.00 0.00 5.54
3221 8063 3.435275 ACATAGCTTCAGACTGGACTGA 58.565 45.455 1.81 0.00 43.83 3.41
3417 8285 7.721399 ACAATTCAGGACTATGTAATGGGAATC 59.279 37.037 0.00 0.00 0.00 2.52
3418 8286 7.586349 ACAATTCAGGACTATGTAATGGGAAT 58.414 34.615 0.00 0.00 0.00 3.01
3419 8287 6.969043 ACAATTCAGGACTATGTAATGGGAA 58.031 36.000 0.00 0.00 0.00 3.97
3420 8288 6.575244 ACAATTCAGGACTATGTAATGGGA 57.425 37.500 0.00 0.00 0.00 4.37
3424 8296 7.663081 CAGCCATACAATTCAGGACTATGTAAT 59.337 37.037 0.00 0.00 31.01 1.89
3666 8541 4.082026 AGCAAGTCCAAGTTTCCATAATGC 60.082 41.667 0.00 0.00 0.00 3.56
3749 8631 9.551734 TTGACTGATATCTCATCTTGGTTAATG 57.448 33.333 3.98 0.00 0.00 1.90
3751 8633 9.958180 TTTTGACTGATATCTCATCTTGGTTAA 57.042 29.630 3.98 0.00 0.00 2.01
3832 8715 6.435428 ACGAAAGTTGGTGCTGTTTTATAAG 58.565 36.000 0.00 0.00 46.40 1.73
3835 8718 4.911514 ACGAAAGTTGGTGCTGTTTTAT 57.088 36.364 0.00 0.00 46.40 1.40
3886 8769 5.757320 CCAAATGACATTTTAAGCACAACCA 59.243 36.000 10.77 0.00 0.00 3.67
4208 9091 1.595466 GCTCCATCTCTTCATGCCAG 58.405 55.000 0.00 0.00 0.00 4.85
4350 9236 2.165437 GTGGAAAACAAGCTGGTGTCAA 59.835 45.455 0.00 0.00 0.00 3.18
4359 9245 6.508777 TGTAATAACAAGGTGGAAAACAAGC 58.491 36.000 0.00 0.00 30.91 4.01
4407 9293 6.218746 TCCATCAAGATGATTCATAGACACG 58.781 40.000 11.48 0.00 41.20 4.49
4409 9295 8.095169 CAGATCCATCAAGATGATTCATAGACA 58.905 37.037 11.48 0.00 41.20 3.41
4474 9360 0.512952 GCAAGACGTAGCTGTGTTGG 59.487 55.000 13.72 1.13 41.83 3.77
4556 9446 4.280174 CACTACTACACCGGCCAGTATAAT 59.720 45.833 0.00 0.00 0.00 1.28
4589 9479 9.750125 TTCTAGAATTTTTCTTTTCTTTCCAGC 57.250 29.630 0.00 0.00 41.14 4.85
4668 11360 8.542497 TTAGCGTTTCTACAGACATGTTAAAT 57.458 30.769 0.00 0.00 41.01 1.40
4696 11388 8.114301 ACCTGGGTCCAATTAGTCTATTTTAT 57.886 34.615 0.00 0.00 0.00 1.40
4762 11454 1.233019 CTGGGTGCTGACAGTTCTTG 58.767 55.000 3.99 0.00 0.00 3.02
4825 11517 3.939066 ACCAGACATACTTTGCACTACC 58.061 45.455 0.00 0.00 0.00 3.18
4879 11571 8.862325 AGAAACATCAGTACCATTGAATTACA 57.138 30.769 0.00 0.00 0.00 2.41
4908 11600 9.810545 ACGTCAAAAAGAAAAAGAATTAATCCA 57.189 25.926 0.00 0.00 0.00 3.41
4912 11604 8.790674 CGTCACGTCAAAAAGAAAAAGAATTAA 58.209 29.630 0.00 0.00 0.00 1.40
4913 11605 7.964011 ACGTCACGTCAAAAAGAAAAAGAATTA 59.036 29.630 0.00 0.00 33.69 1.40
4914 11606 6.804783 ACGTCACGTCAAAAAGAAAAAGAATT 59.195 30.769 0.00 0.00 33.69 2.17
4917 11609 5.083389 CACGTCACGTCAAAAAGAAAAAGA 58.917 37.500 0.00 0.00 38.32 2.52
4918 11610 4.262045 CCACGTCACGTCAAAAAGAAAAAG 59.738 41.667 0.00 0.00 38.32 2.27
4923 11615 2.296831 TCCACGTCACGTCAAAAAGA 57.703 45.000 0.00 0.00 38.32 2.52
4924 11616 3.602390 AATCCACGTCACGTCAAAAAG 57.398 42.857 0.00 0.00 38.32 2.27
4925 11617 5.676532 ATTAATCCACGTCACGTCAAAAA 57.323 34.783 0.00 0.00 38.32 1.94
4926 11618 5.467399 AGAATTAATCCACGTCACGTCAAAA 59.533 36.000 0.00 0.00 38.32 2.44
4930 11622 4.387862 ACAAGAATTAATCCACGTCACGTC 59.612 41.667 0.00 0.00 38.32 4.34
4931 11623 4.151689 CACAAGAATTAATCCACGTCACGT 59.848 41.667 0.00 0.00 42.36 4.49
4932 11624 4.637968 CACAAGAATTAATCCACGTCACG 58.362 43.478 0.00 0.00 0.00 4.35
4933 11625 4.154195 AGCACAAGAATTAATCCACGTCAC 59.846 41.667 0.00 0.00 0.00 3.67
4934 11626 4.323417 AGCACAAGAATTAATCCACGTCA 58.677 39.130 0.00 0.00 0.00 4.35
4936 11628 8.395633 GTTATAAGCACAAGAATTAATCCACGT 58.604 33.333 0.00 0.00 0.00 4.49
4983 11816 3.819537 ACTTACGAGTTACGACTGCTTC 58.180 45.455 0.00 0.00 45.77 3.86
5070 11903 1.142185 CTACAGTGACGCGCCATCAG 61.142 60.000 5.73 0.00 0.00 2.90
5175 12011 5.398603 TTTTGGATGGCACGTCAATTATT 57.601 34.783 0.00 0.00 0.00 1.40
5201 12037 3.243873 TGTCGCCTATCATTGTGGAGATC 60.244 47.826 0.00 0.00 32.72 2.75
5202 12038 2.700371 TGTCGCCTATCATTGTGGAGAT 59.300 45.455 0.00 0.00 32.72 2.75
5214 12052 0.749649 CTCCTTGCTCTGTCGCCTAT 59.250 55.000 0.00 0.00 0.00 2.57
5243 12082 3.188159 AGTCCTTGCTTTGTCGTGTAA 57.812 42.857 0.00 0.00 0.00 2.41
5244 12083 2.902705 AGTCCTTGCTTTGTCGTGTA 57.097 45.000 0.00 0.00 0.00 2.90
5245 12084 2.038387 AAGTCCTTGCTTTGTCGTGT 57.962 45.000 0.00 0.00 0.00 4.49
5246 12085 3.745975 TCATAAGTCCTTGCTTTGTCGTG 59.254 43.478 0.00 0.00 0.00 4.35
5247 12086 4.002906 TCATAAGTCCTTGCTTTGTCGT 57.997 40.909 0.00 0.00 0.00 4.34
5248 12087 4.872691 AGATCATAAGTCCTTGCTTTGTCG 59.127 41.667 0.00 0.00 0.00 4.35
5249 12088 6.372659 TGAAGATCATAAGTCCTTGCTTTGTC 59.627 38.462 0.00 0.00 0.00 3.18
5250 12089 6.150140 GTGAAGATCATAAGTCCTTGCTTTGT 59.850 38.462 0.00 0.00 0.00 2.83
5251 12090 6.149973 TGTGAAGATCATAAGTCCTTGCTTTG 59.850 38.462 0.00 0.00 0.00 2.77
5252 12091 6.150140 GTGTGAAGATCATAAGTCCTTGCTTT 59.850 38.462 0.00 0.00 0.00 3.51
5253 12092 5.645497 GTGTGAAGATCATAAGTCCTTGCTT 59.355 40.000 0.00 0.00 0.00 3.91
5254 12093 5.046014 AGTGTGAAGATCATAAGTCCTTGCT 60.046 40.000 0.00 0.00 0.00 3.91
5255 12094 5.064452 CAGTGTGAAGATCATAAGTCCTTGC 59.936 44.000 0.00 0.00 0.00 4.01
5256 12095 6.401394 TCAGTGTGAAGATCATAAGTCCTTG 58.599 40.000 0.00 0.00 0.00 3.61
5257 12096 6.611613 TCAGTGTGAAGATCATAAGTCCTT 57.388 37.500 0.00 0.00 0.00 3.36
5258 12097 6.014242 TGTTCAGTGTGAAGATCATAAGTCCT 60.014 38.462 0.00 0.00 37.00 3.85
5259 12098 6.166279 TGTTCAGTGTGAAGATCATAAGTCC 58.834 40.000 0.00 0.00 37.00 3.85
5260 12099 7.332926 ACATGTTCAGTGTGAAGATCATAAGTC 59.667 37.037 0.00 0.00 38.15 3.01
5261 12100 7.164122 ACATGTTCAGTGTGAAGATCATAAGT 58.836 34.615 0.00 0.00 38.15 2.24
5262 12101 7.606858 ACATGTTCAGTGTGAAGATCATAAG 57.393 36.000 0.00 0.00 38.15 1.73
5263 12102 7.984422 AACATGTTCAGTGTGAAGATCATAA 57.016 32.000 4.92 0.00 38.15 1.90
5264 12103 7.661027 TCAAACATGTTCAGTGTGAAGATCATA 59.339 33.333 12.39 0.00 38.15 2.15
5265 12104 6.487668 TCAAACATGTTCAGTGTGAAGATCAT 59.512 34.615 12.39 0.00 38.15 2.45
5266 12105 5.821995 TCAAACATGTTCAGTGTGAAGATCA 59.178 36.000 12.39 0.00 38.15 2.92
5267 12106 6.138761 GTCAAACATGTTCAGTGTGAAGATC 58.861 40.000 12.39 0.00 38.15 2.75
5268 12107 5.589855 TGTCAAACATGTTCAGTGTGAAGAT 59.410 36.000 12.39 0.00 40.45 2.40
5269 12108 4.940654 TGTCAAACATGTTCAGTGTGAAGA 59.059 37.500 12.39 0.00 37.00 2.87
5270 12109 5.030295 GTGTCAAACATGTTCAGTGTGAAG 58.970 41.667 12.39 0.00 37.00 3.02
5271 12110 4.436718 CGTGTCAAACATGTTCAGTGTGAA 60.437 41.667 12.39 0.72 35.15 3.18
5276 12115 1.946768 CCCGTGTCAAACATGTTCAGT 59.053 47.619 12.39 0.00 33.37 3.41
5278 12117 2.333688 TCCCGTGTCAAACATGTTCA 57.666 45.000 12.39 2.72 33.37 3.18
5280 12119 3.888930 AGATTTCCCGTGTCAAACATGTT 59.111 39.130 4.92 4.92 33.37 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.