Multiple sequence alignment - TraesCS1A01G413500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G413500 chr1A 100.000 2471 0 0 1 2471 573315976 573313506 0.000000e+00 4564
1 TraesCS1A01G413500 chr4A 97.724 1538 30 3 933 2466 585554182 585552646 0.000000e+00 2641
2 TraesCS1A01G413500 chr4A 84.282 1476 200 20 996 2448 743321527 743320061 0.000000e+00 1411
3 TraesCS1A01G413500 chr4A 95.223 314 11 3 633 945 585554598 585554288 6.140000e-136 494
4 TraesCS1A01G413500 chr4A 93.284 268 15 2 374 639 340504236 340504502 2.300000e-105 392
5 TraesCS1A01G413500 chr4A 92.674 273 15 4 367 636 319360592 319360862 2.980000e-104 388
6 TraesCS1A01G413500 chr4A 98.667 75 0 1 184 258 585555962 585555889 5.540000e-27 132
7 TraesCS1A01G413500 chr4A 85.417 96 12 2 894 988 743321659 743321565 5.620000e-17 99
8 TraesCS1A01G413500 chr3A 95.035 987 48 1 1485 2471 750104034 750103049 0.000000e+00 1550
9 TraesCS1A01G413500 chr3A 94.364 621 32 2 811 1428 750104657 750104037 0.000000e+00 950
10 TraesCS1A01G413500 chr3A 92.701 274 13 6 367 636 61977247 61977517 2.980000e-104 388
11 TraesCS1A01G413500 chr3B 94.630 987 52 1 1485 2471 824636067 824637052 0.000000e+00 1528
12 TraesCS1A01G413500 chr3B 94.364 621 32 2 811 1428 824635444 824636064 0.000000e+00 950
13 TraesCS1A01G413500 chr4D 83.754 1625 222 29 881 2471 59517000 59518616 0.000000e+00 1500
14 TraesCS1A01G413500 chr4D 93.015 272 15 3 368 637 77371465 77371196 6.410000e-106 394
15 TraesCS1A01G413500 chr4D 97.753 178 4 0 1 178 416805733 416805556 8.580000e-80 307
16 TraesCS1A01G413500 chr6A 84.806 1494 200 16 1000 2471 579818314 579816826 0.000000e+00 1476
17 TraesCS1A01G413500 chr6A 84.806 1494 200 16 1000 2471 616123987 616125475 0.000000e+00 1476
18 TraesCS1A01G413500 chr6A 93.916 263 13 2 376 636 76520939 76520678 6.410000e-106 394
19 TraesCS1A01G413500 chr7D 84.358 1496 203 19 1000 2471 197421464 197419976 0.000000e+00 1437
20 TraesCS1A01G413500 chr7D 98.305 177 3 0 1 177 514058870 514058694 6.640000e-81 311
21 TraesCS1A01G413500 chr5A 84.168 1497 207 22 1000 2471 700862876 700864367 0.000000e+00 1424
22 TraesCS1A01G413500 chr1B 82.966 1497 220 22 1000 2471 643272423 643273909 0.000000e+00 1319
23 TraesCS1A01G413500 chr1B 98.305 177 3 0 1 177 557881616 557881440 6.640000e-81 311
24 TraesCS1A01G413500 chr2B 85.788 1168 159 4 1310 2471 144154384 144155550 0.000000e+00 1230
25 TraesCS1A01G413500 chr5B 86.961 1066 136 2 1408 2470 548978484 548979549 0.000000e+00 1195
26 TraesCS1A01G413500 chr4B 93.962 265 13 2 374 636 43088717 43088980 4.950000e-107 398
27 TraesCS1A01G413500 chrUn 93.609 266 14 2 373 636 108799233 108799497 6.410000e-106 394
28 TraesCS1A01G413500 chr7A 93.916 263 13 2 376 636 599039565 599039304 6.410000e-106 394
29 TraesCS1A01G413500 chr7A 91.786 280 17 5 375 652 85196398 85196673 3.850000e-103 385
30 TraesCS1A01G413500 chr5D 98.305 177 3 0 1 177 532676349 532676525 6.640000e-81 311
31 TraesCS1A01G413500 chr3D 98.305 177 3 0 1 177 51723558 51723382 6.640000e-81 311
32 TraesCS1A01G413500 chr2A 98.305 177 3 0 1 177 13585296 13585472 6.640000e-81 311
33 TraesCS1A01G413500 chr1D 98.305 177 3 0 1 177 477313062 477312886 6.640000e-81 311
34 TraesCS1A01G413500 chr6D 97.753 178 4 0 1 178 285473436 285473259 8.580000e-80 307
35 TraesCS1A01G413500 chr6D 97.753 178 4 0 1 178 343171414 343171591 8.580000e-80 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G413500 chr1A 573313506 573315976 2470 True 4564 4564 100.000000 1 2471 1 chr1A.!!$R1 2470
1 TraesCS1A01G413500 chr4A 585552646 585555962 3316 True 1089 2641 97.204667 184 2466 3 chr4A.!!$R1 2282
2 TraesCS1A01G413500 chr4A 743320061 743321659 1598 True 755 1411 84.849500 894 2448 2 chr4A.!!$R2 1554
3 TraesCS1A01G413500 chr3A 750103049 750104657 1608 True 1250 1550 94.699500 811 2471 2 chr3A.!!$R1 1660
4 TraesCS1A01G413500 chr3B 824635444 824637052 1608 False 1239 1528 94.497000 811 2471 2 chr3B.!!$F1 1660
5 TraesCS1A01G413500 chr4D 59517000 59518616 1616 False 1500 1500 83.754000 881 2471 1 chr4D.!!$F1 1590
6 TraesCS1A01G413500 chr6A 579816826 579818314 1488 True 1476 1476 84.806000 1000 2471 1 chr6A.!!$R2 1471
7 TraesCS1A01G413500 chr6A 616123987 616125475 1488 False 1476 1476 84.806000 1000 2471 1 chr6A.!!$F1 1471
8 TraesCS1A01G413500 chr7D 197419976 197421464 1488 True 1437 1437 84.358000 1000 2471 1 chr7D.!!$R1 1471
9 TraesCS1A01G413500 chr5A 700862876 700864367 1491 False 1424 1424 84.168000 1000 2471 1 chr5A.!!$F1 1471
10 TraesCS1A01G413500 chr1B 643272423 643273909 1486 False 1319 1319 82.966000 1000 2471 1 chr1B.!!$F1 1471
11 TraesCS1A01G413500 chr2B 144154384 144155550 1166 False 1230 1230 85.788000 1310 2471 1 chr2B.!!$F1 1161
12 TraesCS1A01G413500 chr5B 548978484 548979549 1065 False 1195 1195 86.961000 1408 2470 1 chr5B.!!$F1 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.038526 CTGGTTCTACCGTCGTGCTT 60.039 55.0 0.0 0.0 42.58 3.91 F
114 115 0.163146 GTTCTACCGTCGTGCTTTGC 59.837 55.0 0.0 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 2686 2.535984 GCGTTGATGGACTACTGAATCG 59.464 50.000 0.0 0.0 0.0 3.34 R
1731 3091 3.349927 TCAAGACTTTCATCATGCCCAG 58.650 45.455 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.913376 GCTTACCAGCATGTCATACTTTG 58.087 43.478 0.00 0.00 46.49 2.77
31 32 4.201950 GCTTACCAGCATGTCATACTTTGG 60.202 45.833 0.00 0.00 46.49 3.28
32 33 3.439857 ACCAGCATGTCATACTTTGGT 57.560 42.857 0.00 4.67 32.88 3.67
33 34 3.766545 ACCAGCATGTCATACTTTGGTT 58.233 40.909 0.00 0.00 33.94 3.67
34 35 3.758554 ACCAGCATGTCATACTTTGGTTC 59.241 43.478 0.00 0.00 33.94 3.62
35 36 3.181507 CCAGCATGTCATACTTTGGTTCG 60.182 47.826 0.00 0.00 0.00 3.95
36 37 3.009723 AGCATGTCATACTTTGGTTCGG 58.990 45.455 0.00 0.00 0.00 4.30
37 38 2.477863 GCATGTCATACTTTGGTTCGGC 60.478 50.000 0.00 0.00 0.00 5.54
38 39 1.434555 TGTCATACTTTGGTTCGGCG 58.565 50.000 0.00 0.00 0.00 6.46
39 40 0.725117 GTCATACTTTGGTTCGGCGG 59.275 55.000 7.21 0.00 0.00 6.13
40 41 0.322322 TCATACTTTGGTTCGGCGGT 59.678 50.000 7.21 0.00 0.00 5.68
41 42 1.549620 TCATACTTTGGTTCGGCGGTA 59.450 47.619 7.21 0.00 0.00 4.02
42 43 2.168936 TCATACTTTGGTTCGGCGGTAT 59.831 45.455 7.21 1.72 0.00 2.73
43 44 2.766345 TACTTTGGTTCGGCGGTATT 57.234 45.000 7.21 0.00 0.00 1.89
44 45 1.161843 ACTTTGGTTCGGCGGTATTG 58.838 50.000 7.21 0.00 0.00 1.90
45 46 1.161843 CTTTGGTTCGGCGGTATTGT 58.838 50.000 7.21 0.00 0.00 2.71
46 47 1.538075 CTTTGGTTCGGCGGTATTGTT 59.462 47.619 7.21 0.00 0.00 2.83
47 48 0.875728 TTGGTTCGGCGGTATTGTTG 59.124 50.000 7.21 0.00 0.00 3.33
48 49 0.956410 TGGTTCGGCGGTATTGTTGG 60.956 55.000 7.21 0.00 0.00 3.77
49 50 0.674269 GGTTCGGCGGTATTGTTGGA 60.674 55.000 7.21 0.00 0.00 3.53
50 51 1.375551 GTTCGGCGGTATTGTTGGAT 58.624 50.000 7.21 0.00 0.00 3.41
51 52 1.063469 GTTCGGCGGTATTGTTGGATG 59.937 52.381 7.21 0.00 0.00 3.51
52 53 0.537653 TCGGCGGTATTGTTGGATGA 59.462 50.000 7.21 0.00 0.00 2.92
53 54 1.066071 TCGGCGGTATTGTTGGATGAA 60.066 47.619 7.21 0.00 0.00 2.57
54 55 1.330521 CGGCGGTATTGTTGGATGAAG 59.669 52.381 0.00 0.00 0.00 3.02
55 56 1.065551 GGCGGTATTGTTGGATGAAGC 59.934 52.381 0.00 0.00 0.00 3.86
56 57 1.268032 GCGGTATTGTTGGATGAAGCG 60.268 52.381 0.00 0.00 0.00 4.68
57 58 1.330521 CGGTATTGTTGGATGAAGCGG 59.669 52.381 0.00 0.00 0.00 5.52
58 59 1.065551 GGTATTGTTGGATGAAGCGGC 59.934 52.381 0.00 0.00 0.00 6.53
59 60 1.065551 GTATTGTTGGATGAAGCGGCC 59.934 52.381 0.00 0.00 0.00 6.13
60 61 1.322538 ATTGTTGGATGAAGCGGCCC 61.323 55.000 0.00 0.00 0.00 5.80
61 62 3.508840 GTTGGATGAAGCGGCCCG 61.509 66.667 0.00 0.00 0.00 6.13
62 63 4.794648 TTGGATGAAGCGGCCCGG 62.795 66.667 4.77 0.00 0.00 5.73
73 74 2.202974 GGCCCGGACCGACATTAC 60.203 66.667 17.49 0.00 0.00 1.89
74 75 2.584143 GCCCGGACCGACATTACG 60.584 66.667 17.49 0.00 0.00 3.18
75 76 2.584143 CCCGGACCGACATTACGC 60.584 66.667 17.49 0.00 0.00 4.42
76 77 2.952783 CCGGACCGACATTACGCG 60.953 66.667 17.49 3.53 0.00 6.01
77 78 2.202518 CGGACCGACATTACGCGT 60.203 61.111 19.17 19.17 0.00 6.01
78 79 1.062365 CGGACCGACATTACGCGTA 59.938 57.895 16.41 16.41 0.00 4.42
79 80 1.196130 CGGACCGACATTACGCGTAC 61.196 60.000 20.44 6.50 0.00 3.67
81 82 1.791533 GACCGACATTACGCGTACGC 61.792 60.000 29.83 29.83 45.53 4.42
82 83 1.584483 CCGACATTACGCGTACGCT 60.584 57.895 34.69 24.05 45.53 5.07
83 84 1.135699 CCGACATTACGCGTACGCTT 61.136 55.000 34.69 29.07 45.53 4.68
84 85 1.455726 CGACATTACGCGTACGCTTA 58.544 50.000 34.69 27.96 45.53 3.09
85 86 1.183631 CGACATTACGCGTACGCTTAC 59.816 52.381 34.69 17.91 45.53 2.34
86 87 2.176369 GACATTACGCGTACGCTTACA 58.824 47.619 34.69 20.63 45.53 2.41
87 88 1.913403 ACATTACGCGTACGCTTACAC 59.087 47.619 34.69 8.42 45.53 2.90
88 89 1.073245 CATTACGCGTACGCTTACACG 60.073 52.381 34.69 21.59 45.53 4.49
89 90 0.164863 TTACGCGTACGCTTACACGA 59.835 50.000 34.69 14.39 45.53 4.35
90 91 0.247262 TACGCGTACGCTTACACGAG 60.247 55.000 34.69 20.19 45.53 4.18
91 92 1.225827 CGCGTACGCTTACACGAGA 60.226 57.895 34.69 0.00 39.85 4.04
92 93 1.451307 CGCGTACGCTTACACGAGAC 61.451 60.000 34.69 4.92 39.85 3.36
93 94 0.179205 GCGTACGCTTACACGAGACT 60.179 55.000 31.95 0.00 40.56 3.24
94 95 1.521411 CGTACGCTTACACGAGACTG 58.479 55.000 0.52 0.00 40.56 3.51
95 96 1.789410 CGTACGCTTACACGAGACTGG 60.789 57.143 0.52 0.00 40.56 4.00
96 97 1.198637 GTACGCTTACACGAGACTGGT 59.801 52.381 0.00 0.00 36.70 4.00
97 98 0.672342 ACGCTTACACGAGACTGGTT 59.328 50.000 0.00 0.00 36.70 3.67
98 99 1.335689 ACGCTTACACGAGACTGGTTC 60.336 52.381 0.00 0.00 36.70 3.62
99 100 1.068472 CGCTTACACGAGACTGGTTCT 60.068 52.381 0.00 0.00 37.23 3.01
100 101 2.161012 CGCTTACACGAGACTGGTTCTA 59.839 50.000 0.00 0.00 33.22 2.10
101 102 3.500014 GCTTACACGAGACTGGTTCTAC 58.500 50.000 0.00 0.00 33.22 2.59
102 103 3.672781 GCTTACACGAGACTGGTTCTACC 60.673 52.174 0.00 0.00 39.22 3.18
103 104 0.879765 ACACGAGACTGGTTCTACCG 59.120 55.000 0.00 0.00 42.58 4.02
104 105 0.879765 CACGAGACTGGTTCTACCGT 59.120 55.000 0.00 0.00 42.58 4.83
105 106 1.135746 CACGAGACTGGTTCTACCGTC 60.136 57.143 10.68 10.68 42.58 4.79
106 107 0.096628 CGAGACTGGTTCTACCGTCG 59.903 60.000 12.00 5.70 42.58 5.12
107 108 1.163554 GAGACTGGTTCTACCGTCGT 58.836 55.000 12.00 1.80 42.58 4.34
108 109 0.879765 AGACTGGTTCTACCGTCGTG 59.120 55.000 12.00 0.00 42.58 4.35
109 110 0.731855 GACTGGTTCTACCGTCGTGC 60.732 60.000 0.00 0.00 42.58 5.34
110 111 1.177256 ACTGGTTCTACCGTCGTGCT 61.177 55.000 0.00 0.00 42.58 4.40
111 112 0.038526 CTGGTTCTACCGTCGTGCTT 60.039 55.000 0.00 0.00 42.58 3.91
112 113 0.390124 TGGTTCTACCGTCGTGCTTT 59.610 50.000 0.00 0.00 42.58 3.51
113 114 0.788391 GGTTCTACCGTCGTGCTTTG 59.212 55.000 0.00 0.00 0.00 2.77
114 115 0.163146 GTTCTACCGTCGTGCTTTGC 59.837 55.000 0.00 0.00 0.00 3.68
115 116 0.249531 TTCTACCGTCGTGCTTTGCA 60.250 50.000 0.00 0.00 35.60 4.08
125 126 2.266070 TGCTTTGCACATAGGTGGC 58.734 52.632 9.91 4.65 45.38 5.01
126 127 0.251297 TGCTTTGCACATAGGTGGCT 60.251 50.000 9.91 0.00 45.38 4.75
127 128 0.171903 GCTTTGCACATAGGTGGCTG 59.828 55.000 9.91 0.00 45.38 4.85
128 129 0.813184 CTTTGCACATAGGTGGCTGG 59.187 55.000 9.91 0.00 45.38 4.85
129 130 1.250154 TTTGCACATAGGTGGCTGGC 61.250 55.000 9.91 0.00 45.38 4.85
130 131 3.204827 GCACATAGGTGGCTGGCG 61.205 66.667 9.91 0.00 45.38 5.69
131 132 2.514592 CACATAGGTGGCTGGCGG 60.515 66.667 0.00 0.00 41.45 6.13
132 133 3.797353 ACATAGGTGGCTGGCGGG 61.797 66.667 0.00 0.00 0.00 6.13
133 134 3.797353 CATAGGTGGCTGGCGGGT 61.797 66.667 0.00 0.00 0.00 5.28
134 135 3.797353 ATAGGTGGCTGGCGGGTG 61.797 66.667 0.00 0.00 0.00 4.61
142 143 3.655481 CTGGCGGGTGTCAGTTTC 58.345 61.111 0.00 0.00 42.99 2.78
143 144 1.071471 CTGGCGGGTGTCAGTTTCT 59.929 57.895 0.00 0.00 42.99 2.52
144 145 0.951040 CTGGCGGGTGTCAGTTTCTC 60.951 60.000 0.00 0.00 42.99 2.87
145 146 1.671379 GGCGGGTGTCAGTTTCTCC 60.671 63.158 0.00 0.00 0.00 3.71
146 147 1.070786 GCGGGTGTCAGTTTCTCCA 59.929 57.895 0.00 0.00 0.00 3.86
147 148 0.534203 GCGGGTGTCAGTTTCTCCAA 60.534 55.000 0.00 0.00 0.00 3.53
148 149 1.226746 CGGGTGTCAGTTTCTCCAAC 58.773 55.000 0.00 0.00 35.32 3.77
150 151 2.745152 CGGGTGTCAGTTTCTCCAACTT 60.745 50.000 0.00 0.00 43.89 2.66
151 152 3.288092 GGGTGTCAGTTTCTCCAACTTT 58.712 45.455 0.00 0.00 43.89 2.66
152 153 4.457466 GGGTGTCAGTTTCTCCAACTTTA 58.543 43.478 0.00 0.00 43.89 1.85
153 154 4.515567 GGGTGTCAGTTTCTCCAACTTTAG 59.484 45.833 0.00 0.00 43.89 1.85
154 155 5.123936 GGTGTCAGTTTCTCCAACTTTAGT 58.876 41.667 0.00 0.00 43.89 2.24
155 156 5.589050 GGTGTCAGTTTCTCCAACTTTAGTT 59.411 40.000 0.00 0.00 43.89 2.24
168 169 5.924475 AACTTTAGTTGAATCGAGTGTGG 57.076 39.130 0.00 0.00 36.80 4.17
169 170 4.957296 ACTTTAGTTGAATCGAGTGTGGT 58.043 39.130 0.00 0.00 0.00 4.16
170 171 5.365619 ACTTTAGTTGAATCGAGTGTGGTT 58.634 37.500 0.00 0.00 0.00 3.67
171 172 6.518493 ACTTTAGTTGAATCGAGTGTGGTTA 58.482 36.000 0.00 0.00 0.00 2.85
172 173 6.423001 ACTTTAGTTGAATCGAGTGTGGTTAC 59.577 38.462 0.00 0.00 0.00 2.50
173 174 3.314553 AGTTGAATCGAGTGTGGTTACG 58.685 45.455 0.00 0.00 0.00 3.18
174 175 1.705256 TGAATCGAGTGTGGTTACGC 58.295 50.000 0.00 0.00 37.58 4.42
175 176 0.997196 GAATCGAGTGTGGTTACGCC 59.003 55.000 0.00 0.00 38.06 5.68
176 177 0.390735 AATCGAGTGTGGTTACGCCC 60.391 55.000 0.00 0.00 38.06 6.13
177 178 1.537814 ATCGAGTGTGGTTACGCCCA 61.538 55.000 0.00 0.00 38.06 5.36
178 179 1.301087 CGAGTGTGGTTACGCCCAA 60.301 57.895 0.00 0.00 38.06 4.12
179 180 0.672401 CGAGTGTGGTTACGCCCAAT 60.672 55.000 0.00 0.00 38.06 3.16
180 181 0.802494 GAGTGTGGTTACGCCCAATG 59.198 55.000 0.00 0.00 38.06 2.82
181 182 0.398696 AGTGTGGTTACGCCCAATGA 59.601 50.000 0.00 0.00 38.06 2.57
182 183 1.202830 AGTGTGGTTACGCCCAATGAA 60.203 47.619 0.00 0.00 38.06 2.57
192 193 1.318158 GCCCAATGAAGGAGCCACAG 61.318 60.000 0.00 0.00 0.00 3.66
281 282 2.267426 GCCCAAAACAATGTATTCCGC 58.733 47.619 0.00 0.00 0.00 5.54
282 283 2.353208 GCCCAAAACAATGTATTCCGCA 60.353 45.455 0.00 0.00 0.00 5.69
283 284 3.510719 CCCAAAACAATGTATTCCGCAG 58.489 45.455 0.00 0.00 0.00 5.18
300 301 1.230149 AGGTCTGGCCACCCCAATA 60.230 57.895 16.45 0.00 44.81 1.90
301 302 1.227383 GGTCTGGCCACCCCAATAG 59.773 63.158 0.00 0.00 44.81 1.73
302 303 1.453928 GTCTGGCCACCCCAATAGC 60.454 63.158 0.00 0.00 44.81 2.97
303 304 1.928046 TCTGGCCACCCCAATAGCA 60.928 57.895 0.00 0.00 44.81 3.49
304 305 1.000233 CTGGCCACCCCAATAGCAA 60.000 57.895 0.00 0.00 44.81 3.91
305 306 1.000233 TGGCCACCCCAATAGCAAG 60.000 57.895 0.00 0.00 41.82 4.01
306 307 1.000359 GGCCACCCCAATAGCAAGT 60.000 57.895 0.00 0.00 0.00 3.16
307 308 1.037579 GGCCACCCCAATAGCAAGTC 61.038 60.000 0.00 0.00 0.00 3.01
308 309 0.323360 GCCACCCCAATAGCAAGTCA 60.323 55.000 0.00 0.00 0.00 3.41
309 310 1.755179 CCACCCCAATAGCAAGTCAG 58.245 55.000 0.00 0.00 0.00 3.51
310 311 1.098050 CACCCCAATAGCAAGTCAGC 58.902 55.000 0.00 0.00 0.00 4.26
316 909 3.066342 CCCAATAGCAAGTCAGCATTCAG 59.934 47.826 0.00 0.00 36.85 3.02
317 910 3.693085 CCAATAGCAAGTCAGCATTCAGT 59.307 43.478 0.00 0.00 36.85 3.41
322 915 7.959689 ATAGCAAGTCAGCATTCAGTAATAG 57.040 36.000 0.00 0.00 36.85 1.73
324 917 6.176183 AGCAAGTCAGCATTCAGTAATAGTT 58.824 36.000 0.00 0.00 36.85 2.24
326 919 6.253746 CAAGTCAGCATTCAGTAATAGTTGC 58.746 40.000 0.00 0.00 0.00 4.17
327 920 4.878397 AGTCAGCATTCAGTAATAGTTGCC 59.122 41.667 0.00 0.00 0.00 4.52
328 921 4.635765 GTCAGCATTCAGTAATAGTTGCCA 59.364 41.667 0.00 0.00 0.00 4.92
329 922 4.635765 TCAGCATTCAGTAATAGTTGCCAC 59.364 41.667 0.00 0.00 0.00 5.01
330 923 3.623060 AGCATTCAGTAATAGTTGCCACG 59.377 43.478 0.00 0.00 0.00 4.94
331 924 3.621268 GCATTCAGTAATAGTTGCCACGA 59.379 43.478 0.00 0.00 0.00 4.35
337 930 7.709269 TCAGTAATAGTTGCCACGATAAATC 57.291 36.000 0.00 0.00 0.00 2.17
338 931 6.704493 TCAGTAATAGTTGCCACGATAAATCC 59.296 38.462 0.00 0.00 0.00 3.01
340 933 7.870954 CAGTAATAGTTGCCACGATAAATCCTA 59.129 37.037 0.00 0.00 0.00 2.94
342 935 7.730364 AATAGTTGCCACGATAAATCCTAAG 57.270 36.000 0.00 0.00 0.00 2.18
347 940 4.127171 GCCACGATAAATCCTAAGCTCAA 58.873 43.478 0.00 0.00 0.00 3.02
348 941 4.757149 GCCACGATAAATCCTAAGCTCAAT 59.243 41.667 0.00 0.00 0.00 2.57
349 942 5.106908 GCCACGATAAATCCTAAGCTCAATC 60.107 44.000 0.00 0.00 0.00 2.67
373 1544 9.981460 ATCTTTGACTTTTCCCATTAGTATTCT 57.019 29.630 0.00 0.00 0.00 2.40
383 1554 9.725206 TTTCCCATTAGTATTCTAGTACTTCCT 57.275 33.333 0.00 0.00 36.39 3.36
384 1555 8.937207 TCCCATTAGTATTCTAGTACTTCCTC 57.063 38.462 0.00 0.00 36.39 3.71
385 1556 7.949006 TCCCATTAGTATTCTAGTACTTCCTCC 59.051 40.741 0.00 0.00 36.39 4.30
386 1557 7.094291 CCCATTAGTATTCTAGTACTTCCTCCG 60.094 44.444 0.00 0.00 36.39 4.63
387 1558 7.447853 CCATTAGTATTCTAGTACTTCCTCCGT 59.552 40.741 0.00 0.00 36.39 4.69
388 1559 8.848182 CATTAGTATTCTAGTACTTCCTCCGTT 58.152 37.037 0.00 0.00 36.39 4.44
389 1560 8.814038 TTAGTATTCTAGTACTTCCTCCGTTT 57.186 34.615 0.00 0.00 36.39 3.60
390 1561 7.332213 AGTATTCTAGTACTTCCTCCGTTTC 57.668 40.000 0.00 0.00 30.95 2.78
391 1562 7.118060 AGTATTCTAGTACTTCCTCCGTTTCT 58.882 38.462 0.00 0.00 30.95 2.52
392 1563 6.854091 ATTCTAGTACTTCCTCCGTTTCTT 57.146 37.500 0.00 0.00 0.00 2.52
393 1564 6.661304 TTCTAGTACTTCCTCCGTTTCTTT 57.339 37.500 0.00 0.00 0.00 2.52
394 1565 7.765695 TTCTAGTACTTCCTCCGTTTCTTTA 57.234 36.000 0.00 0.00 0.00 1.85
395 1566 7.388460 TCTAGTACTTCCTCCGTTTCTTTAG 57.612 40.000 0.00 0.00 0.00 1.85
396 1567 6.944862 TCTAGTACTTCCTCCGTTTCTTTAGT 59.055 38.462 0.00 0.00 0.00 2.24
397 1568 6.023357 AGTACTTCCTCCGTTTCTTTAGTC 57.977 41.667 0.00 0.00 0.00 2.59
398 1569 5.774184 AGTACTTCCTCCGTTTCTTTAGTCT 59.226 40.000 0.00 0.00 0.00 3.24
399 1570 4.884247 ACTTCCTCCGTTTCTTTAGTCTG 58.116 43.478 0.00 0.00 0.00 3.51
400 1571 3.314541 TCCTCCGTTTCTTTAGTCTGC 57.685 47.619 0.00 0.00 0.00 4.26
401 1572 2.631062 TCCTCCGTTTCTTTAGTCTGCA 59.369 45.455 0.00 0.00 0.00 4.41
402 1573 3.260884 TCCTCCGTTTCTTTAGTCTGCAT 59.739 43.478 0.00 0.00 0.00 3.96
403 1574 4.464951 TCCTCCGTTTCTTTAGTCTGCATA 59.535 41.667 0.00 0.00 0.00 3.14
404 1575 5.128827 TCCTCCGTTTCTTTAGTCTGCATAT 59.871 40.000 0.00 0.00 0.00 1.78
405 1576 6.322969 TCCTCCGTTTCTTTAGTCTGCATATA 59.677 38.462 0.00 0.00 0.00 0.86
406 1577 6.984474 CCTCCGTTTCTTTAGTCTGCATATAA 59.016 38.462 0.00 0.00 0.00 0.98
407 1578 7.169982 CCTCCGTTTCTTTAGTCTGCATATAAG 59.830 40.741 0.00 0.00 0.00 1.73
408 1579 7.778083 TCCGTTTCTTTAGTCTGCATATAAGA 58.222 34.615 0.00 0.00 0.00 2.10
409 1580 8.421784 TCCGTTTCTTTAGTCTGCATATAAGAT 58.578 33.333 0.00 0.00 0.00 2.40
410 1581 9.046296 CCGTTTCTTTAGTCTGCATATAAGATT 57.954 33.333 0.00 0.00 0.00 2.40
414 1585 9.905713 TTCTTTAGTCTGCATATAAGATTTGGT 57.094 29.630 0.00 0.00 0.00 3.67
415 1586 9.547753 TCTTTAGTCTGCATATAAGATTTGGTC 57.452 33.333 0.00 0.00 0.00 4.02
416 1587 9.330063 CTTTAGTCTGCATATAAGATTTGGTCA 57.670 33.333 0.00 0.00 0.00 4.02
417 1588 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
418 1589 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
419 1590 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
420 1591 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
421 1592 8.462016 GTCTGCATATAAGATTTGGTCAAAGTT 58.538 33.333 2.55 1.84 33.32 2.66
422 1593 9.679661 TCTGCATATAAGATTTGGTCAAAGTTA 57.320 29.630 2.55 3.72 33.32 2.24
425 1596 9.237846 GCATATAAGATTTGGTCAAAGTTAAGC 57.762 33.333 2.55 5.66 33.32 3.09
444 1615 9.999009 AGTTAAGCTTTGTAAAGTTTGACTAAC 57.001 29.630 21.17 14.57 46.37 2.34
501 1672 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
502 1673 9.134055 TGAAATCAATATTATCAGATGCACCAA 57.866 29.630 0.00 0.00 0.00 3.67
503 1674 9.622004 GAAATCAATATTATCAGATGCACCAAG 57.378 33.333 0.00 0.00 0.00 3.61
504 1675 8.929260 AATCAATATTATCAGATGCACCAAGA 57.071 30.769 0.00 0.00 0.00 3.02
505 1676 8.929260 ATCAATATTATCAGATGCACCAAGAA 57.071 30.769 0.00 0.00 0.00 2.52
506 1677 8.750515 TCAATATTATCAGATGCACCAAGAAA 57.249 30.769 0.00 0.00 0.00 2.52
507 1678 9.187996 TCAATATTATCAGATGCACCAAGAAAA 57.812 29.630 0.00 0.00 0.00 2.29
508 1679 9.976511 CAATATTATCAGATGCACCAAGAAAAT 57.023 29.630 0.00 0.00 0.00 1.82
509 1680 9.976511 AATATTATCAGATGCACCAAGAAAATG 57.023 29.630 0.00 0.00 0.00 2.32
510 1681 6.839124 TTATCAGATGCACCAAGAAAATGT 57.161 33.333 0.00 0.00 0.00 2.71
511 1682 7.936496 TTATCAGATGCACCAAGAAAATGTA 57.064 32.000 0.00 0.00 0.00 2.29
512 1683 8.523915 TTATCAGATGCACCAAGAAAATGTAT 57.476 30.769 0.00 0.00 0.00 2.29
513 1684 6.839124 TCAGATGCACCAAGAAAATGTATT 57.161 33.333 0.00 0.00 0.00 1.89
514 1685 7.230849 TCAGATGCACCAAGAAAATGTATTT 57.769 32.000 0.00 0.00 0.00 1.40
515 1686 7.669427 TCAGATGCACCAAGAAAATGTATTTT 58.331 30.769 2.43 2.43 42.24 1.82
591 1762 9.868277 TTTGATCAAAATTTGTGTAGTTTGACT 57.132 25.926 18.45 0.00 41.40 3.41
592 1763 9.868277 TTGATCAAAATTTGTGTAGTTTGACTT 57.132 25.926 5.45 0.00 41.40 3.01
593 1764 9.868277 TGATCAAAATTTGTGTAGTTTGACTTT 57.132 25.926 5.56 0.00 41.40 2.66
595 1766 9.868277 ATCAAAATTTGTGTAGTTTGACTTTGA 57.132 25.926 5.56 0.00 41.40 2.69
596 1767 9.134734 TCAAAATTTGTGTAGTTTGACTTTGAC 57.865 29.630 5.56 0.00 35.60 3.18
597 1768 8.379902 CAAAATTTGTGTAGTTTGACTTTGACC 58.620 33.333 0.00 0.00 33.70 4.02
598 1769 6.767524 ATTTGTGTAGTTTGACTTTGACCA 57.232 33.333 0.00 0.00 0.00 4.02
599 1770 6.576662 TTTGTGTAGTTTGACTTTGACCAA 57.423 33.333 0.00 0.00 0.00 3.67
600 1771 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
601 1772 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
602 1773 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
603 1774 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
604 1775 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
605 1776 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
606 1777 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
610 1781 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
611 1782 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
612 1783 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
613 1784 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
614 1785 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
615 1786 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
616 1787 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
617 1788 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
618 1789 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
619 1790 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
620 1791 8.154649 ACCAAATCTTATATGCGGAGTAAAAG 57.845 34.615 0.00 0.00 0.00 2.27
621 1792 7.228706 ACCAAATCTTATATGCGGAGTAAAAGG 59.771 37.037 0.00 0.00 0.00 3.11
622 1793 7.444183 CCAAATCTTATATGCGGAGTAAAAGGA 59.556 37.037 0.00 0.00 0.00 3.36
623 1794 8.836413 CAAATCTTATATGCGGAGTAAAAGGAA 58.164 33.333 0.00 0.00 0.00 3.36
624 1795 8.974060 AATCTTATATGCGGAGTAAAAGGAAA 57.026 30.769 0.00 0.00 0.00 3.13
625 1796 7.781548 TCTTATATGCGGAGTAAAAGGAAAC 57.218 36.000 0.00 0.00 0.00 2.78
626 1797 6.764560 TCTTATATGCGGAGTAAAAGGAAACC 59.235 38.462 0.00 0.00 0.00 3.27
627 1798 1.515081 TGCGGAGTAAAAGGAAACCG 58.485 50.000 0.00 0.00 42.63 4.44
628 1799 1.070445 TGCGGAGTAAAAGGAAACCGA 59.930 47.619 0.00 0.00 42.40 4.69
629 1800 1.730612 GCGGAGTAAAAGGAAACCGAG 59.269 52.381 0.00 0.00 42.40 4.63
630 1801 2.344025 CGGAGTAAAAGGAAACCGAGG 58.656 52.381 0.00 0.00 42.40 4.63
631 1802 2.708051 GGAGTAAAAGGAAACCGAGGG 58.292 52.381 0.00 0.00 0.00 4.30
668 1839 4.767255 CGTGAGGTGAGGCAGCCC 62.767 72.222 8.22 0.00 31.60 5.19
695 1866 0.250727 CGCCCCTGTTTCTTCTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
707 1878 3.390135 TCTTCTCCAACACACGTGAATC 58.610 45.455 25.01 0.00 0.00 2.52
791 1963 0.247736 CGAACCCTCCAAGGAGACAG 59.752 60.000 17.57 8.20 44.53 3.51
822 1994 1.777272 GGCCAGGTCCCAAATCTATCT 59.223 52.381 0.00 0.00 0.00 1.98
1268 2625 4.532126 TCCTCCTAATGCTCAAGAACAAGA 59.468 41.667 0.00 0.00 0.00 3.02
1329 2686 4.762289 AATGGATGAGTACCCTCTTGAC 57.238 45.455 0.00 0.00 38.61 3.18
1731 3091 2.681421 CCAAGCTTGCCCCTTCCC 60.681 66.667 21.43 0.00 0.00 3.97
1735 3095 4.766632 GCTTGCCCCTTCCCTGGG 62.767 72.222 6.33 6.33 46.56 4.45
1997 3357 6.662234 AGATGAATCCAAAAGAGAGCAAATGA 59.338 34.615 0.00 0.00 0.00 2.57
2244 3608 7.650504 GTGTCCTTACGCATATTACATTCACTA 59.349 37.037 0.00 0.00 36.10 2.74
2307 3671 2.960819 AGAAGTAGCCGATGTTCACAC 58.039 47.619 0.00 0.00 0.00 3.82
2340 3704 4.823442 TCATCTTGCTCTTGTTGTCAACAT 59.177 37.500 18.83 0.00 41.79 2.71
2353 3717 3.615155 TGTCAACATGGTTGTGTCTTCA 58.385 40.909 8.75 0.00 35.83 3.02
2390 3754 4.388485 TGAGCTGCAAGTTAATCAAGTGA 58.612 39.130 1.02 0.00 35.30 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.943705 ACCAAAGTATGACATGCTGGTAAG 59.056 41.667 13.54 2.91 0.00 2.34
10 11 4.917385 ACCAAAGTATGACATGCTGGTAA 58.083 39.130 13.54 0.00 0.00 2.85
11 12 4.568072 ACCAAAGTATGACATGCTGGTA 57.432 40.909 13.54 0.00 0.00 3.25
12 13 3.439857 ACCAAAGTATGACATGCTGGT 57.560 42.857 6.82 8.94 0.00 4.00
13 14 3.181507 CGAACCAAAGTATGACATGCTGG 60.182 47.826 6.82 8.32 0.00 4.85
14 15 3.181507 CCGAACCAAAGTATGACATGCTG 60.182 47.826 6.82 0.00 0.00 4.41
15 16 3.009723 CCGAACCAAAGTATGACATGCT 58.990 45.455 0.00 0.00 0.00 3.79
16 17 2.477863 GCCGAACCAAAGTATGACATGC 60.478 50.000 0.00 0.00 0.00 4.06
17 18 2.223021 CGCCGAACCAAAGTATGACATG 60.223 50.000 0.00 0.00 0.00 3.21
18 19 2.006888 CGCCGAACCAAAGTATGACAT 58.993 47.619 0.00 0.00 0.00 3.06
19 20 1.434555 CGCCGAACCAAAGTATGACA 58.565 50.000 0.00 0.00 0.00 3.58
20 21 0.725117 CCGCCGAACCAAAGTATGAC 59.275 55.000 0.00 0.00 0.00 3.06
21 22 0.322322 ACCGCCGAACCAAAGTATGA 59.678 50.000 0.00 0.00 0.00 2.15
22 23 2.012937 TACCGCCGAACCAAAGTATG 57.987 50.000 0.00 0.00 0.00 2.39
23 24 2.940410 CAATACCGCCGAACCAAAGTAT 59.060 45.455 0.00 0.00 0.00 2.12
24 25 2.289569 ACAATACCGCCGAACCAAAGTA 60.290 45.455 0.00 0.00 0.00 2.24
25 26 1.161843 CAATACCGCCGAACCAAAGT 58.838 50.000 0.00 0.00 0.00 2.66
26 27 1.161843 ACAATACCGCCGAACCAAAG 58.838 50.000 0.00 0.00 0.00 2.77
27 28 1.267261 CAACAATACCGCCGAACCAAA 59.733 47.619 0.00 0.00 0.00 3.28
28 29 0.875728 CAACAATACCGCCGAACCAA 59.124 50.000 0.00 0.00 0.00 3.67
29 30 0.956410 CCAACAATACCGCCGAACCA 60.956 55.000 0.00 0.00 0.00 3.67
30 31 0.674269 TCCAACAATACCGCCGAACC 60.674 55.000 0.00 0.00 0.00 3.62
31 32 1.063469 CATCCAACAATACCGCCGAAC 59.937 52.381 0.00 0.00 0.00 3.95
32 33 1.066071 TCATCCAACAATACCGCCGAA 60.066 47.619 0.00 0.00 0.00 4.30
33 34 0.537653 TCATCCAACAATACCGCCGA 59.462 50.000 0.00 0.00 0.00 5.54
34 35 1.330521 CTTCATCCAACAATACCGCCG 59.669 52.381 0.00 0.00 0.00 6.46
35 36 1.065551 GCTTCATCCAACAATACCGCC 59.934 52.381 0.00 0.00 0.00 6.13
36 37 1.268032 CGCTTCATCCAACAATACCGC 60.268 52.381 0.00 0.00 0.00 5.68
37 38 1.330521 CCGCTTCATCCAACAATACCG 59.669 52.381 0.00 0.00 0.00 4.02
38 39 1.065551 GCCGCTTCATCCAACAATACC 59.934 52.381 0.00 0.00 0.00 2.73
39 40 1.065551 GGCCGCTTCATCCAACAATAC 59.934 52.381 0.00 0.00 0.00 1.89
40 41 1.388547 GGCCGCTTCATCCAACAATA 58.611 50.000 0.00 0.00 0.00 1.90
41 42 1.322538 GGGCCGCTTCATCCAACAAT 61.323 55.000 0.00 0.00 0.00 2.71
42 43 1.976474 GGGCCGCTTCATCCAACAA 60.976 57.895 0.00 0.00 0.00 2.83
43 44 2.361104 GGGCCGCTTCATCCAACA 60.361 61.111 0.00 0.00 0.00 3.33
44 45 3.508840 CGGGCCGCTTCATCCAAC 61.509 66.667 15.42 0.00 0.00 3.77
45 46 4.794648 CCGGGCCGCTTCATCCAA 62.795 66.667 23.20 0.00 0.00 3.53
56 57 2.202974 GTAATGTCGGTCCGGGCC 60.203 66.667 17.58 17.58 0.00 5.80
57 58 2.584143 CGTAATGTCGGTCCGGGC 60.584 66.667 12.29 0.00 0.00 6.13
58 59 2.584143 GCGTAATGTCGGTCCGGG 60.584 66.667 12.29 0.00 0.00 5.73
59 60 2.321668 TACGCGTAATGTCGGTCCGG 62.322 60.000 18.22 0.00 0.00 5.14
60 61 1.062365 TACGCGTAATGTCGGTCCG 59.938 57.895 18.22 4.39 0.00 4.79
61 62 1.196130 CGTACGCGTAATGTCGGTCC 61.196 60.000 22.44 4.02 0.00 4.46
62 63 1.791533 GCGTACGCGTAATGTCGGTC 61.792 60.000 26.17 4.80 40.81 4.79
63 64 1.869132 GCGTACGCGTAATGTCGGT 60.869 57.895 26.17 0.00 40.81 4.69
64 65 2.908363 GCGTACGCGTAATGTCGG 59.092 61.111 26.17 7.36 40.81 4.79
74 75 0.179205 AGTCTCGTGTAAGCGTACGC 60.179 55.000 32.17 32.17 39.94 4.42
75 76 1.521411 CAGTCTCGTGTAAGCGTACG 58.479 55.000 11.84 11.84 41.38 3.67
76 77 1.198637 ACCAGTCTCGTGTAAGCGTAC 59.801 52.381 2.53 2.53 0.00 3.67
77 78 1.527034 ACCAGTCTCGTGTAAGCGTA 58.473 50.000 0.00 0.00 0.00 4.42
78 79 0.672342 AACCAGTCTCGTGTAAGCGT 59.328 50.000 0.00 0.00 0.00 5.07
79 80 1.068472 AGAACCAGTCTCGTGTAAGCG 60.068 52.381 0.00 0.00 0.00 4.68
80 81 2.726832 AGAACCAGTCTCGTGTAAGC 57.273 50.000 0.00 0.00 0.00 3.09
81 82 3.425892 CGGTAGAACCAGTCTCGTGTAAG 60.426 52.174 0.00 0.00 38.47 2.34
82 83 2.485426 CGGTAGAACCAGTCTCGTGTAA 59.515 50.000 0.00 0.00 38.47 2.41
83 84 2.079158 CGGTAGAACCAGTCTCGTGTA 58.921 52.381 0.00 0.00 38.47 2.90
84 85 0.879765 CGGTAGAACCAGTCTCGTGT 59.120 55.000 0.00 0.00 38.47 4.49
85 86 0.879765 ACGGTAGAACCAGTCTCGTG 59.120 55.000 0.00 0.00 38.47 4.35
86 87 1.163554 GACGGTAGAACCAGTCTCGT 58.836 55.000 11.34 0.00 38.96 4.18
87 88 0.096628 CGACGGTAGAACCAGTCTCG 59.903 60.000 14.54 4.67 38.47 4.04
88 89 1.135746 CACGACGGTAGAACCAGTCTC 60.136 57.143 0.00 0.00 38.47 3.36
89 90 0.879765 CACGACGGTAGAACCAGTCT 59.120 55.000 0.00 0.00 38.47 3.24
90 91 0.731855 GCACGACGGTAGAACCAGTC 60.732 60.000 0.00 9.54 38.47 3.51
91 92 1.177256 AGCACGACGGTAGAACCAGT 61.177 55.000 0.00 0.00 38.47 4.00
92 93 0.038526 AAGCACGACGGTAGAACCAG 60.039 55.000 0.00 0.00 38.47 4.00
93 94 0.390124 AAAGCACGACGGTAGAACCA 59.610 50.000 0.00 0.00 38.47 3.67
94 95 0.788391 CAAAGCACGACGGTAGAACC 59.212 55.000 0.00 0.00 34.05 3.62
95 96 0.163146 GCAAAGCACGACGGTAGAAC 59.837 55.000 0.00 0.00 0.00 3.01
96 97 0.249531 TGCAAAGCACGACGGTAGAA 60.250 50.000 0.00 0.00 31.71 2.10
97 98 1.364536 TGCAAAGCACGACGGTAGA 59.635 52.632 0.00 0.00 31.71 2.59
98 99 3.945436 TGCAAAGCACGACGGTAG 58.055 55.556 0.00 0.00 31.71 3.18
107 108 0.251297 AGCCACCTATGTGCAAAGCA 60.251 50.000 0.00 0.00 41.35 3.91
108 109 0.171903 CAGCCACCTATGTGCAAAGC 59.828 55.000 0.00 0.00 41.35 3.51
109 110 0.813184 CCAGCCACCTATGTGCAAAG 59.187 55.000 0.00 0.00 41.35 2.77
110 111 1.250154 GCCAGCCACCTATGTGCAAA 61.250 55.000 0.00 0.00 41.35 3.68
111 112 1.678635 GCCAGCCACCTATGTGCAA 60.679 57.895 0.00 0.00 41.35 4.08
112 113 2.045045 GCCAGCCACCTATGTGCA 60.045 61.111 0.00 0.00 41.35 4.57
113 114 3.204827 CGCCAGCCACCTATGTGC 61.205 66.667 0.00 0.00 41.35 4.57
114 115 2.514592 CCGCCAGCCACCTATGTG 60.515 66.667 0.00 0.00 42.39 3.21
115 116 3.797353 CCCGCCAGCCACCTATGT 61.797 66.667 0.00 0.00 0.00 2.29
116 117 3.797353 ACCCGCCAGCCACCTATG 61.797 66.667 0.00 0.00 0.00 2.23
117 118 3.797353 CACCCGCCAGCCACCTAT 61.797 66.667 0.00 0.00 0.00 2.57
123 124 4.643387 AACTGACACCCGCCAGCC 62.643 66.667 0.00 0.00 33.90 4.85
124 125 2.594592 AAACTGACACCCGCCAGC 60.595 61.111 0.00 0.00 33.90 4.85
125 126 0.951040 GAGAAACTGACACCCGCCAG 60.951 60.000 0.00 0.00 36.53 4.85
126 127 1.070786 GAGAAACTGACACCCGCCA 59.929 57.895 0.00 0.00 0.00 5.69
127 128 1.671379 GGAGAAACTGACACCCGCC 60.671 63.158 0.00 0.00 0.00 6.13
128 129 0.534203 TTGGAGAAACTGACACCCGC 60.534 55.000 0.00 0.00 0.00 6.13
129 130 1.226746 GTTGGAGAAACTGACACCCG 58.773 55.000 0.00 0.00 35.75 5.28
146 147 5.365619 ACCACACTCGATTCAACTAAAGTT 58.634 37.500 0.00 0.00 39.12 2.66
147 148 4.957296 ACCACACTCGATTCAACTAAAGT 58.043 39.130 0.00 0.00 0.00 2.66
148 149 5.924475 AACCACACTCGATTCAACTAAAG 57.076 39.130 0.00 0.00 0.00 1.85
149 150 5.403166 CGTAACCACACTCGATTCAACTAAA 59.597 40.000 0.00 0.00 0.00 1.85
150 151 4.919168 CGTAACCACACTCGATTCAACTAA 59.081 41.667 0.00 0.00 0.00 2.24
151 152 4.478699 CGTAACCACACTCGATTCAACTA 58.521 43.478 0.00 0.00 0.00 2.24
152 153 3.314553 CGTAACCACACTCGATTCAACT 58.685 45.455 0.00 0.00 0.00 3.16
153 154 2.159881 GCGTAACCACACTCGATTCAAC 60.160 50.000 0.00 0.00 0.00 3.18
154 155 2.063266 GCGTAACCACACTCGATTCAA 58.937 47.619 0.00 0.00 0.00 2.69
155 156 1.670674 GGCGTAACCACACTCGATTCA 60.671 52.381 0.00 0.00 38.86 2.57
156 157 0.997196 GGCGTAACCACACTCGATTC 59.003 55.000 0.00 0.00 38.86 2.52
157 158 0.390735 GGGCGTAACCACACTCGATT 60.391 55.000 0.00 0.00 42.05 3.34
158 159 1.217244 GGGCGTAACCACACTCGAT 59.783 57.895 0.00 0.00 42.05 3.59
159 160 1.746322 TTGGGCGTAACCACACTCGA 61.746 55.000 0.00 0.00 41.03 4.04
160 161 0.672401 ATTGGGCGTAACCACACTCG 60.672 55.000 0.00 0.00 41.03 4.18
161 162 0.802494 CATTGGGCGTAACCACACTC 59.198 55.000 0.00 0.00 41.03 3.51
162 163 0.398696 TCATTGGGCGTAACCACACT 59.601 50.000 0.00 0.00 41.03 3.55
163 164 1.199097 CTTCATTGGGCGTAACCACAC 59.801 52.381 0.00 0.00 41.03 3.82
164 165 1.529226 CTTCATTGGGCGTAACCACA 58.471 50.000 0.00 0.00 41.03 4.17
165 166 0.808755 CCTTCATTGGGCGTAACCAC 59.191 55.000 0.00 0.00 41.03 4.16
166 167 0.693622 TCCTTCATTGGGCGTAACCA 59.306 50.000 0.00 0.00 42.05 3.67
167 168 1.379527 CTCCTTCATTGGGCGTAACC 58.620 55.000 0.00 0.00 37.93 2.85
168 169 0.733150 GCTCCTTCATTGGGCGTAAC 59.267 55.000 0.00 0.00 0.00 2.50
169 170 0.393808 GGCTCCTTCATTGGGCGTAA 60.394 55.000 0.00 0.00 0.00 3.18
170 171 1.223487 GGCTCCTTCATTGGGCGTA 59.777 57.895 0.00 0.00 0.00 4.42
171 172 2.044946 GGCTCCTTCATTGGGCGT 60.045 61.111 0.00 0.00 0.00 5.68
172 173 2.045045 TGGCTCCTTCATTGGGCG 60.045 61.111 0.00 0.00 0.00 6.13
173 174 1.304381 TGTGGCTCCTTCATTGGGC 60.304 57.895 0.00 0.00 0.00 5.36
174 175 0.682209 CCTGTGGCTCCTTCATTGGG 60.682 60.000 0.00 0.00 0.00 4.12
175 176 0.682209 CCCTGTGGCTCCTTCATTGG 60.682 60.000 0.00 0.00 0.00 3.16
176 177 0.682209 CCCCTGTGGCTCCTTCATTG 60.682 60.000 0.00 0.00 0.00 2.82
177 178 1.693640 CCCCTGTGGCTCCTTCATT 59.306 57.895 0.00 0.00 0.00 2.57
178 179 2.311854 CCCCCTGTGGCTCCTTCAT 61.312 63.158 0.00 0.00 0.00 2.57
179 180 2.935481 CCCCCTGTGGCTCCTTCA 60.935 66.667 0.00 0.00 0.00 3.02
258 259 3.305676 CGGAATACATTGTTTTGGGCACA 60.306 43.478 0.00 0.00 0.00 4.57
259 260 3.249917 CGGAATACATTGTTTTGGGCAC 58.750 45.455 0.00 0.00 0.00 5.01
260 261 2.353208 GCGGAATACATTGTTTTGGGCA 60.353 45.455 0.00 0.00 0.00 5.36
261 262 2.267426 GCGGAATACATTGTTTTGGGC 58.733 47.619 0.00 0.00 0.00 5.36
262 263 3.510719 CTGCGGAATACATTGTTTTGGG 58.489 45.455 0.00 0.00 0.00 4.12
263 264 3.056891 ACCTGCGGAATACATTGTTTTGG 60.057 43.478 0.00 0.00 0.00 3.28
264 265 4.082787 AGACCTGCGGAATACATTGTTTTG 60.083 41.667 0.00 0.00 0.00 2.44
265 266 4.079253 AGACCTGCGGAATACATTGTTTT 58.921 39.130 0.00 0.00 0.00 2.43
266 267 3.440173 CAGACCTGCGGAATACATTGTTT 59.560 43.478 0.00 0.00 0.00 2.83
267 268 3.009723 CAGACCTGCGGAATACATTGTT 58.990 45.455 0.00 0.00 0.00 2.83
268 269 2.632377 CAGACCTGCGGAATACATTGT 58.368 47.619 0.00 0.00 0.00 2.71
269 270 1.942657 CCAGACCTGCGGAATACATTG 59.057 52.381 0.00 0.00 0.00 2.82
270 271 1.747206 GCCAGACCTGCGGAATACATT 60.747 52.381 0.00 0.00 0.00 2.71
273 274 1.523938 GGCCAGACCTGCGGAATAC 60.524 63.158 0.00 0.00 34.51 1.89
281 282 1.570857 TATTGGGGTGGCCAGACCTG 61.571 60.000 22.54 0.00 40.22 4.00
282 283 1.230149 TATTGGGGTGGCCAGACCT 60.230 57.895 22.54 9.27 40.22 3.85
283 284 1.227383 CTATTGGGGTGGCCAGACC 59.773 63.158 5.11 12.87 39.84 3.85
284 285 1.453928 GCTATTGGGGTGGCCAGAC 60.454 63.158 5.11 1.09 0.00 3.51
285 286 1.505151 TTGCTATTGGGGTGGCCAGA 61.505 55.000 5.11 0.00 0.00 3.86
286 287 1.000233 TTGCTATTGGGGTGGCCAG 60.000 57.895 5.11 0.00 0.00 4.85
287 288 1.000233 CTTGCTATTGGGGTGGCCA 60.000 57.895 0.00 0.00 0.00 5.36
288 289 1.000359 ACTTGCTATTGGGGTGGCC 60.000 57.895 0.00 0.00 0.00 5.36
290 291 1.755179 CTGACTTGCTATTGGGGTGG 58.245 55.000 0.00 0.00 0.00 4.61
292 293 0.698238 TGCTGACTTGCTATTGGGGT 59.302 50.000 0.00 0.00 0.00 4.95
293 294 2.062971 ATGCTGACTTGCTATTGGGG 57.937 50.000 0.00 0.00 0.00 4.96
294 295 3.018856 TGAATGCTGACTTGCTATTGGG 58.981 45.455 0.00 0.00 0.00 4.12
295 296 3.693085 ACTGAATGCTGACTTGCTATTGG 59.307 43.478 0.00 0.00 0.00 3.16
296 297 4.959596 ACTGAATGCTGACTTGCTATTG 57.040 40.909 0.00 0.00 0.00 1.90
297 298 7.989741 ACTATTACTGAATGCTGACTTGCTATT 59.010 33.333 0.00 0.00 0.00 1.73
300 301 5.738909 ACTATTACTGAATGCTGACTTGCT 58.261 37.500 0.00 0.00 0.00 3.91
301 302 6.253746 CAACTATTACTGAATGCTGACTTGC 58.746 40.000 0.00 0.00 0.00 4.01
302 303 6.253746 GCAACTATTACTGAATGCTGACTTG 58.746 40.000 0.00 0.00 0.00 3.16
303 304 5.355350 GGCAACTATTACTGAATGCTGACTT 59.645 40.000 0.00 0.00 34.37 3.01
304 305 4.878397 GGCAACTATTACTGAATGCTGACT 59.122 41.667 0.00 0.00 34.37 3.41
305 306 4.635765 TGGCAACTATTACTGAATGCTGAC 59.364 41.667 0.00 0.00 34.37 3.51
306 307 4.635765 GTGGCAACTATTACTGAATGCTGA 59.364 41.667 0.00 0.00 34.37 4.26
307 308 4.494690 CGTGGCAACTATTACTGAATGCTG 60.495 45.833 0.00 0.00 34.37 4.41
308 309 3.623060 CGTGGCAACTATTACTGAATGCT 59.377 43.478 0.00 0.00 34.37 3.79
309 310 3.621268 TCGTGGCAACTATTACTGAATGC 59.379 43.478 0.00 0.00 37.61 3.56
310 311 5.991328 ATCGTGGCAACTATTACTGAATG 57.009 39.130 0.00 0.00 37.61 2.67
316 909 8.597662 TTAGGATTTATCGTGGCAACTATTAC 57.402 34.615 0.00 0.00 37.61 1.89
317 910 7.386848 GCTTAGGATTTATCGTGGCAACTATTA 59.613 37.037 0.00 0.00 37.61 0.98
322 915 3.877508 AGCTTAGGATTTATCGTGGCAAC 59.122 43.478 0.00 0.00 31.94 4.17
324 917 3.133901 TGAGCTTAGGATTTATCGTGGCA 59.866 43.478 0.00 0.00 31.94 4.92
326 919 6.226787 AGATTGAGCTTAGGATTTATCGTGG 58.773 40.000 0.00 0.00 0.00 4.94
327 920 7.721286 AAGATTGAGCTTAGGATTTATCGTG 57.279 36.000 0.00 0.00 0.00 4.35
328 921 7.987458 TCAAAGATTGAGCTTAGGATTTATCGT 59.013 33.333 0.00 0.00 34.08 3.73
329 922 8.279103 GTCAAAGATTGAGCTTAGGATTTATCG 58.721 37.037 0.00 0.00 41.01 2.92
330 923 9.336171 AGTCAAAGATTGAGCTTAGGATTTATC 57.664 33.333 0.00 0.00 41.01 1.75
331 924 9.692325 AAGTCAAAGATTGAGCTTAGGATTTAT 57.308 29.630 0.00 0.00 41.01 1.40
337 930 6.349694 GGGAAAAGTCAAAGATTGAGCTTAGG 60.350 42.308 0.00 0.00 41.01 2.69
338 931 6.207417 TGGGAAAAGTCAAAGATTGAGCTTAG 59.793 38.462 0.00 0.00 41.01 2.18
340 933 4.895297 TGGGAAAAGTCAAAGATTGAGCTT 59.105 37.500 0.00 0.00 41.01 3.74
342 935 4.853924 TGGGAAAAGTCAAAGATTGAGC 57.146 40.909 0.00 0.00 41.01 4.26
347 940 9.981460 AGAATACTAATGGGAAAAGTCAAAGAT 57.019 29.630 0.00 0.00 0.00 2.40
372 1543 7.121020 AGACTAAAGAAACGGAGGAAGTACTAG 59.879 40.741 0.00 0.00 0.00 2.57
373 1544 6.944862 AGACTAAAGAAACGGAGGAAGTACTA 59.055 38.462 0.00 0.00 0.00 1.82
374 1545 5.774184 AGACTAAAGAAACGGAGGAAGTACT 59.226 40.000 0.00 0.00 0.00 2.73
375 1546 5.862860 CAGACTAAAGAAACGGAGGAAGTAC 59.137 44.000 0.00 0.00 0.00 2.73
376 1547 5.566230 GCAGACTAAAGAAACGGAGGAAGTA 60.566 44.000 0.00 0.00 0.00 2.24
377 1548 4.799917 GCAGACTAAAGAAACGGAGGAAGT 60.800 45.833 0.00 0.00 0.00 3.01
378 1549 3.680458 GCAGACTAAAGAAACGGAGGAAG 59.320 47.826 0.00 0.00 0.00 3.46
379 1550 3.070446 TGCAGACTAAAGAAACGGAGGAA 59.930 43.478 0.00 0.00 0.00 3.36
380 1551 2.631062 TGCAGACTAAAGAAACGGAGGA 59.369 45.455 0.00 0.00 0.00 3.71
381 1552 3.040147 TGCAGACTAAAGAAACGGAGG 57.960 47.619 0.00 0.00 0.00 4.30
382 1553 7.921214 TCTTATATGCAGACTAAAGAAACGGAG 59.079 37.037 0.00 0.00 0.00 4.63
383 1554 7.778083 TCTTATATGCAGACTAAAGAAACGGA 58.222 34.615 0.00 0.00 0.00 4.69
384 1555 8.594881 ATCTTATATGCAGACTAAAGAAACGG 57.405 34.615 6.68 0.00 0.00 4.44
388 1559 9.905713 ACCAAATCTTATATGCAGACTAAAGAA 57.094 29.630 6.68 0.00 0.00 2.52
389 1560 9.547753 GACCAAATCTTATATGCAGACTAAAGA 57.452 33.333 5.41 5.41 0.00 2.52
390 1561 9.330063 TGACCAAATCTTATATGCAGACTAAAG 57.670 33.333 0.00 0.00 0.00 1.85
391 1562 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
392 1563 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
393 1564 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
394 1565 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
395 1566 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
396 1567 8.579850 AACTTTGACCAAATCTTATATGCAGA 57.420 30.769 0.00 0.00 0.00 4.26
399 1570 9.237846 GCTTAACTTTGACCAAATCTTATATGC 57.762 33.333 0.00 0.00 0.00 3.14
418 1589 9.999009 GTTAGTCAAACTTTACAAAGCTTAACT 57.001 29.630 0.00 1.07 39.63 2.24
419 1590 9.999009 AGTTAGTCAAACTTTACAAAGCTTAAC 57.001 29.630 0.00 0.00 46.61 2.01
475 1646 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
476 1647 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
477 1648 9.622004 CTTGGTGCATCTGATAATATTGATTTC 57.378 33.333 0.00 0.00 0.00 2.17
478 1649 9.358406 TCTTGGTGCATCTGATAATATTGATTT 57.642 29.630 0.00 0.00 0.00 2.17
479 1650 8.929260 TCTTGGTGCATCTGATAATATTGATT 57.071 30.769 0.00 0.00 0.00 2.57
480 1651 8.929260 TTCTTGGTGCATCTGATAATATTGAT 57.071 30.769 0.00 0.00 0.00 2.57
481 1652 8.750515 TTTCTTGGTGCATCTGATAATATTGA 57.249 30.769 0.00 0.00 0.00 2.57
482 1653 9.976511 ATTTTCTTGGTGCATCTGATAATATTG 57.023 29.630 0.00 0.00 0.00 1.90
483 1654 9.976511 CATTTTCTTGGTGCATCTGATAATATT 57.023 29.630 0.00 0.00 0.00 1.28
484 1655 9.139734 ACATTTTCTTGGTGCATCTGATAATAT 57.860 29.630 0.00 0.00 0.00 1.28
485 1656 8.523915 ACATTTTCTTGGTGCATCTGATAATA 57.476 30.769 0.00 0.00 0.00 0.98
486 1657 7.414222 ACATTTTCTTGGTGCATCTGATAAT 57.586 32.000 0.00 1.45 0.00 1.28
487 1658 6.839124 ACATTTTCTTGGTGCATCTGATAA 57.161 33.333 0.00 0.00 0.00 1.75
488 1659 8.523915 AATACATTTTCTTGGTGCATCTGATA 57.476 30.769 0.00 0.00 0.00 2.15
489 1660 7.414222 AATACATTTTCTTGGTGCATCTGAT 57.586 32.000 0.00 0.00 0.00 2.90
490 1661 6.839124 AATACATTTTCTTGGTGCATCTGA 57.161 33.333 0.00 0.00 0.00 3.27
491 1662 7.894376 AAAATACATTTTCTTGGTGCATCTG 57.106 32.000 0.00 0.00 35.18 2.90
565 1736 9.868277 AGTCAAACTACACAAATTTTGATCAAA 57.132 25.926 16.91 16.91 39.48 2.69
566 1737 9.868277 AAGTCAAACTACACAAATTTTGATCAA 57.132 25.926 15.81 3.38 39.48 2.57
567 1738 9.868277 AAAGTCAAACTACACAAATTTTGATCA 57.132 25.926 15.81 0.00 39.48 2.92
569 1740 9.868277 TCAAAGTCAAACTACACAAATTTTGAT 57.132 25.926 15.81 6.10 39.48 2.57
570 1741 9.134734 GTCAAAGTCAAACTACACAAATTTTGA 57.865 29.630 15.81 0.00 35.98 2.69
571 1742 8.379902 GGTCAAAGTCAAACTACACAAATTTTG 58.620 33.333 7.59 7.59 0.00 2.44
572 1743 8.091449 TGGTCAAAGTCAAACTACACAAATTTT 58.909 29.630 0.00 0.00 0.00 1.82
573 1744 7.607250 TGGTCAAAGTCAAACTACACAAATTT 58.393 30.769 0.00 0.00 0.00 1.82
574 1745 7.164230 TGGTCAAAGTCAAACTACACAAATT 57.836 32.000 0.00 0.00 0.00 1.82
575 1746 6.767524 TGGTCAAAGTCAAACTACACAAAT 57.232 33.333 0.00 0.00 0.00 2.32
576 1747 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
577 1748 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
578 1749 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
579 1750 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
580 1751 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
584 1755 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
585 1756 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
586 1757 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
587 1758 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
588 1759 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
589 1760 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
590 1761 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
591 1762 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
592 1763 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
593 1764 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
594 1765 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
595 1766 7.228706 CCTTTTACTCCGCATATAAGATTTGGT 59.771 37.037 0.00 0.00 0.00 3.67
596 1767 7.444183 TCCTTTTACTCCGCATATAAGATTTGG 59.556 37.037 0.00 0.00 0.00 3.28
597 1768 8.378172 TCCTTTTACTCCGCATATAAGATTTG 57.622 34.615 0.00 0.00 0.00 2.32
598 1769 8.974060 TTCCTTTTACTCCGCATATAAGATTT 57.026 30.769 0.00 0.00 0.00 2.17
599 1770 8.837389 GTTTCCTTTTACTCCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
600 1771 7.444487 GGTTTCCTTTTACTCCGCATATAAGAT 59.556 37.037 0.00 0.00 0.00 2.40
601 1772 6.764560 GGTTTCCTTTTACTCCGCATATAAGA 59.235 38.462 0.00 0.00 0.00 2.10
602 1773 6.292703 CGGTTTCCTTTTACTCCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
603 1774 5.524646 CGGTTTCCTTTTACTCCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
604 1775 5.051816 CGGTTTCCTTTTACTCCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
605 1776 3.875134 CGGTTTCCTTTTACTCCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
606 1777 3.055963 TCGGTTTCCTTTTACTCCGCATA 60.056 43.478 0.00 0.00 38.18 3.14
607 1778 2.081462 CGGTTTCCTTTTACTCCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
608 1779 1.070445 TCGGTTTCCTTTTACTCCGCA 59.930 47.619 0.00 0.00 38.18 5.69
609 1780 1.730612 CTCGGTTTCCTTTTACTCCGC 59.269 52.381 0.00 0.00 38.18 5.54
610 1781 2.344025 CCTCGGTTTCCTTTTACTCCG 58.656 52.381 0.00 0.00 39.40 4.63
611 1782 2.303890 TCCCTCGGTTTCCTTTTACTCC 59.696 50.000 0.00 0.00 0.00 3.85
612 1783 3.007723 ACTCCCTCGGTTTCCTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
613 1784 2.977580 ACTCCCTCGGTTTCCTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
614 1785 3.413846 ACTCCCTCGGTTTCCTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
615 1786 6.042437 GGATATACTCCCTCGGTTTCCTTTTA 59.958 42.308 0.00 0.00 38.19 1.52
616 1787 5.163227 GGATATACTCCCTCGGTTTCCTTTT 60.163 44.000 0.00 0.00 38.19 2.27
617 1788 4.347292 GGATATACTCCCTCGGTTTCCTTT 59.653 45.833 0.00 0.00 38.19 3.11
618 1789 3.902467 GGATATACTCCCTCGGTTTCCTT 59.098 47.826 0.00 0.00 38.19 3.36
619 1790 3.508426 GGATATACTCCCTCGGTTTCCT 58.492 50.000 0.00 0.00 38.19 3.36
620 1791 3.957591 GGATATACTCCCTCGGTTTCC 57.042 52.381 0.00 0.00 38.19 3.13
630 1801 3.258622 CGGGTTCTCTTGGGATATACTCC 59.741 52.174 0.00 0.00 44.11 3.85
631 1802 3.896272 ACGGGTTCTCTTGGGATATACTC 59.104 47.826 0.00 0.00 0.00 2.59
668 1839 3.944250 AAACAGGGGCGATGGGCTG 62.944 63.158 0.39 0.00 42.94 4.85
675 1846 1.125093 TGGAGAAGAAACAGGGGCGA 61.125 55.000 0.00 0.00 0.00 5.54
683 1854 2.933906 TCACGTGTGTTGGAGAAGAAAC 59.066 45.455 16.51 0.00 0.00 2.78
695 1866 1.002087 GGGAAGAGGATTCACGTGTGT 59.998 52.381 16.51 5.23 0.00 3.72
707 1878 4.541973 CCAAAGAAATTTGGGGAAGAGG 57.458 45.455 11.17 0.00 45.86 3.69
736 1907 3.436028 CGGGAGGGGAGGGGACTA 61.436 72.222 0.00 0.00 44.43 2.59
822 1994 1.677966 CCGACGGGAGAGGAACTGA 60.678 63.158 5.81 0.00 34.09 3.41
1268 2625 7.049754 TCCATGCTTCATATATGCATTACGAT 58.950 34.615 3.54 0.00 44.27 3.73
1329 2686 2.535984 GCGTTGATGGACTACTGAATCG 59.464 50.000 0.00 0.00 0.00 3.34
1615 2975 6.095440 GCTTCACCACTAATTGTTCCATATGT 59.905 38.462 1.24 0.00 0.00 2.29
1731 3091 3.349927 TCAAGACTTTCATCATGCCCAG 58.650 45.455 0.00 0.00 0.00 4.45
1735 3095 6.034591 CCTTGAATCAAGACTTTCATCATGC 58.965 40.000 23.32 0.00 43.42 4.06
1916 3276 8.378565 TGCATCCCCAATTTCTTTACAAATTTA 58.621 29.630 0.00 0.00 34.37 1.40
1922 3282 5.306678 ACTTTGCATCCCCAATTTCTTTACA 59.693 36.000 0.00 0.00 0.00 2.41
1997 3357 4.035909 GTCCACAAAACGAATAACCACTGT 59.964 41.667 0.00 0.00 0.00 3.55
2244 3608 4.202245 AGCTGCAATTGATGAGCAAAAT 57.798 36.364 20.27 3.84 40.48 1.82
2307 3671 5.106396 ACAAGAGCAAGATGATCGAAAAAGG 60.106 40.000 0.00 0.00 37.94 3.11
2340 3704 2.945008 CTCTTGCTTGAAGACACAACCA 59.055 45.455 0.00 0.00 35.64 3.67
2353 3717 3.128938 GCAGCTCATCATTTCTCTTGCTT 59.871 43.478 0.00 0.00 0.00 3.91
2390 3754 5.298777 GCTCAATTAGATGCTCCATTTCAGT 59.701 40.000 0.00 0.00 0.00 3.41
2432 3796 3.456277 CCTACTTGATTAGCCCCACTTCT 59.544 47.826 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.