Multiple sequence alignment - TraesCS1A01G412200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G412200 chr1A 100.000 4588 0 0 1 4588 572579542 572574955 0.000000e+00 8473.0
1 TraesCS1A01G412200 chr1D 84.302 2236 184 82 26 2185 476711440 476709296 0.000000e+00 2030.0
2 TraesCS1A01G412200 chr1D 92.089 1264 60 11 2438 3682 476707830 476706588 0.000000e+00 1744.0
3 TraesCS1A01G412200 chr1D 91.867 873 56 9 3730 4588 476706390 476705519 0.000000e+00 1205.0
4 TraesCS1A01G412200 chr1D 82.353 459 47 21 4163 4588 32441255 32440798 7.250000e-98 368.0
5 TraesCS1A01G412200 chr1D 87.097 124 10 4 2331 2449 476709187 476709065 8.010000e-28 135.0
6 TraesCS1A01G412200 chr1D 90.000 50 4 1 2241 2290 476709222 476709174 3.830000e-06 63.9
7 TraesCS1A01G412200 chr1B 92.850 1049 50 10 2659 3686 663080139 663079095 0.000000e+00 1498.0
8 TraesCS1A01G412200 chr1B 83.421 1140 111 42 434 1553 663082645 663081564 0.000000e+00 987.0
9 TraesCS1A01G412200 chr1B 87.531 802 63 18 3730 4508 663047997 663047210 0.000000e+00 893.0
10 TraesCS1A01G412200 chr1B 89.724 399 20 7 1 378 663083284 663082886 1.480000e-134 490.0
11 TraesCS1A01G412200 chr1B 82.836 402 23 23 1793 2180 663081102 663080733 7.410000e-83 318.0
12 TraesCS1A01G412200 chr1B 86.831 243 24 3 1555 1796 663081518 663081283 9.790000e-67 265.0
13 TraesCS1A01G412200 chr1B 88.372 172 9 5 2488 2657 663080354 663080192 3.620000e-46 196.0
14 TraesCS1A01G412200 chr1B 88.489 139 16 0 2331 2469 663080625 663080487 7.890000e-38 169.0
15 TraesCS1A01G412200 chr5B 83.333 642 85 12 2888 3515 38781850 38782483 1.430000e-159 573.0
16 TraesCS1A01G412200 chr5B 83.261 460 41 17 4163 4588 641905788 641906245 1.550000e-104 390.0
17 TraesCS1A01G412200 chr5B 89.641 251 22 2 2815 3062 441680874 441681123 2.660000e-82 316.0
18 TraesCS1A01G412200 chr2B 83.478 460 40 17 4163 4588 133646039 133645582 3.330000e-106 396.0
19 TraesCS1A01G412200 chr2B 82.213 461 44 18 4163 4588 129743895 129743438 3.370000e-96 363.0
20 TraesCS1A01G412200 chr2B 90.837 251 20 1 2815 3062 232892219 232892469 2.650000e-87 333.0
21 TraesCS1A01G412200 chr2B 85.417 288 27 9 3279 3551 39408689 39408402 7.510000e-73 285.0
22 TraesCS1A01G412200 chr3B 83.043 460 42 16 4163 4588 739402193 739401736 7.200000e-103 385.0
23 TraesCS1A01G412200 chr3B 90.741 270 20 3 2815 3081 574013968 574013701 5.650000e-94 355.0
24 TraesCS1A01G412200 chr2A 90.741 270 19 4 2815 3081 735688491 735688225 5.650000e-94 355.0
25 TraesCS1A01G412200 chr2A 90.558 233 18 4 4359 4588 732555025 732555256 5.770000e-79 305.0
26 TraesCS1A01G412200 chr2A 88.966 145 14 2 4163 4306 732554799 732554942 1.310000e-40 178.0
27 TraesCS1A01G412200 chr4A 91.235 251 19 1 2815 3062 602949088 602949338 5.690000e-89 339.0
28 TraesCS1A01G412200 chr6B 90.800 250 20 1 2816 3062 644806374 644806623 9.510000e-87 331.0
29 TraesCS1A01G412200 chr6A 90.558 233 18 4 4359 4588 428362180 428362411 5.770000e-79 305.0
30 TraesCS1A01G412200 chr6A 89.655 145 13 2 4163 4306 428361954 428362097 2.820000e-42 183.0
31 TraesCS1A01G412200 chr7B 87.850 214 22 4 4356 4566 666404321 666404533 9.860000e-62 248.0
32 TraesCS1A01G412200 chr4B 79.118 340 36 16 4163 4469 565627226 565627563 7.780000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G412200 chr1A 572574955 572579542 4587 True 8473.000000 8473 100.000000 1 4588 1 chr1A.!!$R1 4587
1 TraesCS1A01G412200 chr1D 476705519 476711440 5921 True 1035.580000 2030 89.071000 26 4588 5 chr1D.!!$R2 4562
2 TraesCS1A01G412200 chr1B 663047210 663047997 787 True 893.000000 893 87.531000 3730 4508 1 chr1B.!!$R1 778
3 TraesCS1A01G412200 chr1B 663079095 663083284 4189 True 560.428571 1498 87.503286 1 3686 7 chr1B.!!$R2 3685
4 TraesCS1A01G412200 chr5B 38781850 38782483 633 False 573.000000 573 83.333000 2888 3515 1 chr5B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 308 0.038892 GAGTCACGCCGTCACCTTAA 60.039 55.0 0.00 0.0 0.00 1.85 F
1323 1593 0.101939 TAGATCGCTGCTGCTGTGAG 59.898 55.0 23.52 4.8 36.97 3.51 F
1446 1721 0.108804 CAACCGACCGAGCAGTGTAT 60.109 55.0 0.00 0.0 0.00 2.29 F
2074 2587 0.177604 GATGGAGACCCTGCACTCAG 59.822 60.0 4.64 0.0 34.07 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2583 0.037975 GGTGGCCATGCAAAACTGAG 60.038 55.0 9.72 0.00 0.00 3.35 R
2297 2840 0.239879 GGAACAGCGGCGATTTGAAA 59.760 50.0 12.98 0.00 0.00 2.69 R
3341 5309 0.031585 CGTCGTCCTTGAACCACTGA 59.968 55.0 0.00 0.00 0.00 3.41 R
3696 5840 0.110373 CATGGATGCGCGATCATGTG 60.110 55.0 12.10 12.62 31.91 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.153568 CACGATGCGATCACCACCT 60.154 57.895 0.00 0.00 0.00 4.00
192 218 3.192422 CCTCAAGCTAGATCGAGGTATGG 59.808 52.174 6.83 7.12 40.21 2.74
241 267 4.151512 TGACGTGCACTATACATTGTGTTG 59.848 41.667 16.19 0.00 36.22 3.33
278 308 0.038892 GAGTCACGCCGTCACCTTAA 60.039 55.000 0.00 0.00 0.00 1.85
322 375 2.732366 GTGCGATGATTTCTCGAGCTA 58.268 47.619 7.81 0.00 38.38 3.32
353 406 6.535150 TGTCTTAATTTATCAGCTGGTTCGAG 59.465 38.462 15.13 2.74 0.00 4.04
360 413 1.824852 TCAGCTGGTTCGAGCAATCTA 59.175 47.619 15.13 0.00 41.83 1.98
364 417 3.055819 AGCTGGTTCGAGCAATCTAGAAA 60.056 43.478 9.23 0.00 41.83 2.52
375 428 6.632035 CGAGCAATCTAGAAATGAATTGAAGC 59.368 38.462 11.87 0.00 0.00 3.86
379 432 9.740239 GCAATCTAGAAATGAATTGAAGCATAA 57.260 29.630 11.87 0.00 0.00 1.90
389 442 4.637483 ATTGAAGCATAATGAACCACCG 57.363 40.909 0.00 0.00 0.00 4.94
409 530 2.578786 GTAGGGAGGCTCTCTAGTCAC 58.421 57.143 24.26 11.72 28.36 3.67
420 541 5.181748 GCTCTCTAGTCACCATCAAATTGT 58.818 41.667 0.00 0.00 0.00 2.71
432 670 8.033038 TCACCATCAAATTGTGTACTACTCTAC 58.967 37.037 0.00 0.00 0.00 2.59
442 680 5.821470 TGTGTACTACTCTACATAGGAGTGC 59.179 44.000 6.62 0.00 42.98 4.40
482 721 5.238583 AGTTGAACTTGATTTCCTCCGTAG 58.761 41.667 0.00 0.00 0.00 3.51
484 723 3.007506 TGAACTTGATTTCCTCCGTAGCA 59.992 43.478 0.00 0.00 0.00 3.49
499 738 0.401738 TAGCAGAAACAGCTGGCCTT 59.598 50.000 19.93 8.19 43.33 4.35
505 744 0.107831 AAACAGCTGGCCTTGTACGA 59.892 50.000 19.93 0.00 0.00 3.43
506 745 0.602905 AACAGCTGGCCTTGTACGAC 60.603 55.000 19.93 0.00 0.00 4.34
507 746 1.005037 CAGCTGGCCTTGTACGACA 60.005 57.895 5.57 0.00 0.00 4.35
596 835 1.342074 ACAGAGGAAGCAGTGCTACA 58.658 50.000 20.09 0.00 38.25 2.74
597 836 1.694150 ACAGAGGAAGCAGTGCTACAA 59.306 47.619 20.09 0.00 38.25 2.41
598 837 2.304180 ACAGAGGAAGCAGTGCTACAAT 59.696 45.455 20.09 1.47 38.25 2.71
599 838 3.244700 ACAGAGGAAGCAGTGCTACAATT 60.245 43.478 20.09 1.00 38.25 2.32
601 840 5.121811 CAGAGGAAGCAGTGCTACAATTAT 58.878 41.667 20.09 0.00 38.25 1.28
602 841 5.587844 CAGAGGAAGCAGTGCTACAATTATT 59.412 40.000 20.09 0.00 38.25 1.40
603 842 6.094603 CAGAGGAAGCAGTGCTACAATTATTT 59.905 38.462 20.09 0.00 38.25 1.40
604 843 7.280876 CAGAGGAAGCAGTGCTACAATTATTTA 59.719 37.037 20.09 0.00 38.25 1.40
605 844 7.995488 AGAGGAAGCAGTGCTACAATTATTTAT 59.005 33.333 20.09 0.00 38.25 1.40
606 845 8.525290 AGGAAGCAGTGCTACAATTATTTATT 57.475 30.769 20.09 0.00 38.25 1.40
607 846 8.971073 AGGAAGCAGTGCTACAATTATTTATTT 58.029 29.630 20.09 0.00 38.25 1.40
636 875 0.179020 TCTTGGCTGTCCTTGTGGTG 60.179 55.000 0.00 0.00 34.23 4.17
637 876 1.799258 CTTGGCTGTCCTTGTGGTGC 61.799 60.000 0.00 0.00 34.23 5.01
638 877 2.985847 GGCTGTCCTTGTGGTGCC 60.986 66.667 0.00 0.00 37.78 5.01
639 878 2.113986 GCTGTCCTTGTGGTGCCT 59.886 61.111 0.00 0.00 34.23 4.75
640 879 1.374947 GCTGTCCTTGTGGTGCCTA 59.625 57.895 0.00 0.00 34.23 3.93
641 880 0.250727 GCTGTCCTTGTGGTGCCTAA 60.251 55.000 0.00 0.00 34.23 2.69
642 881 1.813513 CTGTCCTTGTGGTGCCTAAG 58.186 55.000 0.00 0.00 34.23 2.18
643 882 1.072331 CTGTCCTTGTGGTGCCTAAGT 59.928 52.381 0.00 0.00 34.23 2.24
644 883 1.493022 TGTCCTTGTGGTGCCTAAGTT 59.507 47.619 0.00 0.00 34.23 2.66
650 895 1.202758 TGTGGTGCCTAAGTTCAGGTG 60.203 52.381 0.00 0.00 38.05 4.00
661 906 4.431416 AAGTTCAGGTGACACATGGTTA 57.569 40.909 19.30 3.82 29.72 2.85
666 911 2.875933 CAGGTGACACATGGTTAAACGT 59.124 45.455 12.38 0.00 0.00 3.99
688 933 2.647297 GTTCAGGCAGCCAAGCAC 59.353 61.111 15.80 2.27 35.83 4.40
689 934 1.900498 GTTCAGGCAGCCAAGCACT 60.900 57.895 15.80 0.00 35.83 4.40
690 935 1.900016 TTCAGGCAGCCAAGCACTG 60.900 57.895 15.80 1.37 38.22 3.66
701 946 1.131126 CCAAGCACTGGTTAATCTGCG 59.869 52.381 0.00 0.00 40.78 5.18
702 947 0.804989 AAGCACTGGTTAATCTGCGC 59.195 50.000 0.00 0.00 34.69 6.09
703 948 1.060937 GCACTGGTTAATCTGCGCG 59.939 57.895 0.00 0.00 0.00 6.86
705 950 2.321060 CTGGTTAATCTGCGCGCG 59.679 61.111 28.44 28.44 0.00 6.86
707 952 2.320044 GGTTAATCTGCGCGCGAC 59.680 61.111 37.18 24.92 0.00 5.19
708 953 2.449525 GGTTAATCTGCGCGCGACA 61.450 57.895 37.18 28.10 0.00 4.35
710 955 2.164663 TTAATCTGCGCGCGACAGG 61.165 57.895 35.85 24.43 35.78 4.00
711 956 2.551097 TTAATCTGCGCGCGACAGGA 62.551 55.000 35.85 27.26 35.78 3.86
712 957 2.936829 TAATCTGCGCGCGACAGGAG 62.937 60.000 35.85 23.01 35.78 3.69
721 966 4.007644 CGACAGGAGCACAGGCCA 62.008 66.667 5.01 0.00 42.56 5.36
722 967 2.359230 GACAGGAGCACAGGCCAC 60.359 66.667 5.01 0.00 42.56 5.01
723 968 3.170672 ACAGGAGCACAGGCCACA 61.171 61.111 5.01 0.00 42.56 4.17
725 970 1.970114 CAGGAGCACAGGCCACAAG 60.970 63.158 5.01 0.00 42.56 3.16
726 971 2.674380 GGAGCACAGGCCACAAGG 60.674 66.667 5.01 0.00 42.56 3.61
736 981 3.964875 CCACAAGGCCACACGCAC 61.965 66.667 5.01 0.00 40.31 5.34
737 982 4.312231 CACAAGGCCACACGCACG 62.312 66.667 5.01 0.00 40.31 5.34
740 985 4.329545 AAGGCCACACGCACGGAT 62.330 61.111 5.01 0.00 40.31 4.18
741 986 4.760047 AGGCCACACGCACGGATC 62.760 66.667 5.01 0.00 40.31 3.36
744 989 4.735132 CCACACGCACGGATCGGT 62.735 66.667 0.00 0.00 0.00 4.69
745 990 3.179265 CACACGCACGGATCGGTC 61.179 66.667 2.42 0.00 0.00 4.79
746 991 4.771356 ACACGCACGGATCGGTCG 62.771 66.667 17.27 17.27 33.62 4.79
747 992 4.771356 CACGCACGGATCGGTCGT 62.771 66.667 18.18 18.18 41.93 4.34
857 1117 1.153449 GTGCTACCGTGCATGCCTA 60.153 57.895 16.68 0.00 45.23 3.93
858 1118 0.742990 GTGCTACCGTGCATGCCTAA 60.743 55.000 16.68 0.00 45.23 2.69
878 1142 3.077556 CCTCCCTCTCCACCCACG 61.078 72.222 0.00 0.00 0.00 4.94
879 1143 3.775654 CTCCCTCTCCACCCACGC 61.776 72.222 0.00 0.00 0.00 5.34
883 1147 4.394712 CTCTCCACCCACGCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
925 1189 4.973055 CACGTCGGCCGAACCCAA 62.973 66.667 32.93 2.77 40.70 4.12
986 1256 1.374758 CTCCGGAACTCTGGTGCAC 60.375 63.158 8.80 8.80 43.01 4.57
1107 1377 2.683933 GAGGTGGAGAGGGCGGAA 60.684 66.667 0.00 0.00 0.00 4.30
1272 1542 4.567385 CTCGAGCTCGCCAGAGGC 62.567 72.222 30.97 0.00 46.75 4.70
1301 1571 2.360138 CAGTCAGTCACTGCCTCCT 58.640 57.895 0.00 0.00 46.30 3.69
1302 1572 0.246086 CAGTCAGTCACTGCCTCCTC 59.754 60.000 0.00 0.00 46.30 3.71
1303 1573 0.902516 AGTCAGTCACTGCCTCCTCC 60.903 60.000 0.00 0.00 32.26 4.30
1304 1574 0.902516 GTCAGTCACTGCCTCCTCCT 60.903 60.000 0.00 0.00 0.00 3.69
1305 1575 0.704664 TCAGTCACTGCCTCCTCCTA 59.295 55.000 0.00 0.00 0.00 2.94
1306 1576 1.110442 CAGTCACTGCCTCCTCCTAG 58.890 60.000 0.00 0.00 0.00 3.02
1308 1578 1.573376 AGTCACTGCCTCCTCCTAGAT 59.427 52.381 0.00 0.00 0.00 1.98
1312 1582 0.539438 CTGCCTCCTCCTAGATCGCT 60.539 60.000 0.00 0.00 0.00 4.93
1315 1585 0.539438 CCTCCTCCTAGATCGCTGCT 60.539 60.000 0.00 0.00 0.00 4.24
1318 1588 1.462731 CCTCCTAGATCGCTGCTGCT 61.463 60.000 14.03 0.00 36.97 4.24
1320 1590 1.039785 TCCTAGATCGCTGCTGCTGT 61.040 55.000 14.03 1.64 36.97 4.40
1323 1593 0.101939 TAGATCGCTGCTGCTGTGAG 59.898 55.000 23.52 4.80 36.97 3.51
1324 1594 1.447489 GATCGCTGCTGCTGTGAGT 60.447 57.895 23.52 14.00 36.97 3.41
1331 1601 2.724708 GCTGCTGTGAGTTCTCGCG 61.725 63.158 0.00 0.00 0.00 5.87
1332 1602 2.724708 CTGCTGTGAGTTCTCGCGC 61.725 63.158 0.00 16.58 0.00 6.86
1333 1603 3.832171 GCTGTGAGTTCTCGCGCG 61.832 66.667 26.76 26.76 0.00 6.86
1334 1604 3.832171 CTGTGAGTTCTCGCGCGC 61.832 66.667 27.95 23.91 0.00 6.86
1337 1607 4.435436 TGAGTTCTCGCGCGCCAT 62.435 61.111 27.95 8.87 0.00 4.40
1338 1608 3.918220 GAGTTCTCGCGCGCCATG 61.918 66.667 27.95 15.77 0.00 3.66
1353 1623 3.359523 ATGCCGTGCTGTGCTGTG 61.360 61.111 0.00 0.00 0.00 3.66
1354 1624 4.854924 TGCCGTGCTGTGCTGTGT 62.855 61.111 0.00 0.00 0.00 3.72
1355 1625 4.017877 GCCGTGCTGTGCTGTGTC 62.018 66.667 0.00 0.00 0.00 3.67
1372 1643 3.252458 TGTGTCCAGTATGATACGATCGG 59.748 47.826 20.98 1.23 39.69 4.18
1375 1646 3.752222 GTCCAGTATGATACGATCGGTCT 59.248 47.826 20.98 2.79 39.69 3.85
1383 1658 2.561467 TACGATCGGTCTCCTGCCCA 62.561 60.000 20.98 0.00 0.00 5.36
1384 1659 2.502492 CGATCGGTCTCCTGCCCAT 61.502 63.158 7.38 0.00 0.00 4.00
1434 1709 5.795441 GTGAATTAGCAAGAAATCAACCGAC 59.205 40.000 0.00 0.00 0.00 4.79
1446 1721 0.108804 CAACCGACCGAGCAGTGTAT 60.109 55.000 0.00 0.00 0.00 2.29
1456 1731 2.893637 GAGCAGTGTATCATGGTCGTT 58.106 47.619 0.00 0.00 34.60 3.85
1459 1734 2.860735 GCAGTGTATCATGGTCGTTCTC 59.139 50.000 0.00 0.00 0.00 2.87
1469 1744 2.167861 GTCGTTCTCGCATGCTCCC 61.168 63.158 17.13 0.00 36.96 4.30
1485 1760 0.762418 TCCCCGACATGAACACAGTT 59.238 50.000 0.00 0.00 0.00 3.16
1613 1932 1.267532 CCATGCACAATTAGTCGTCGC 60.268 52.381 0.00 0.00 0.00 5.19
1628 1947 1.087501 GTCGCCCACAAGAATTCCTC 58.912 55.000 0.65 0.00 0.00 3.71
1698 2017 2.958355 CCTTTGGCTGTTCTTCTTGGAA 59.042 45.455 0.00 0.00 0.00 3.53
1704 2023 3.244596 GGCTGTTCTTCTTGGAACCTAGT 60.245 47.826 5.15 0.00 43.31 2.57
1715 2034 4.216411 TGGAACCTAGTGTTGGATTAGC 57.784 45.455 1.86 0.00 37.29 3.09
1722 2041 1.553248 AGTGTTGGATTAGCTGCGGTA 59.447 47.619 0.00 0.00 0.00 4.02
1734 2053 2.131183 GCTGCGGTATCAGAGAATCAC 58.869 52.381 0.00 0.00 37.82 3.06
1741 2060 4.509230 CGGTATCAGAGAATCACATGTTGG 59.491 45.833 0.00 0.00 37.82 3.77
1749 2068 3.057033 AGAATCACATGTTGGCTTTGAGC 60.057 43.478 0.00 0.00 41.46 4.26
1750 2069 1.689984 TCACATGTTGGCTTTGAGCA 58.310 45.000 0.00 0.00 44.75 4.26
1764 2083 2.556144 TGAGCAGAAATGTCAGCACT 57.444 45.000 2.80 0.00 38.69 4.40
1770 2089 4.161942 AGCAGAAATGTCAGCACTCTATCT 59.838 41.667 2.80 0.00 38.69 1.98
1899 2405 2.817258 GCTACATACCAAACTGTGCCAA 59.183 45.455 0.00 0.00 0.00 4.52
1901 2407 2.660572 ACATACCAAACTGTGCCAACA 58.339 42.857 0.00 0.00 34.34 3.33
1903 2409 3.640967 ACATACCAAACTGTGCCAACAAT 59.359 39.130 0.00 0.00 35.37 2.71
1904 2410 2.888834 ACCAAACTGTGCCAACAATC 57.111 45.000 0.00 0.00 35.37 2.67
1905 2411 2.387757 ACCAAACTGTGCCAACAATCT 58.612 42.857 0.00 0.00 35.37 2.40
1906 2412 3.561143 ACCAAACTGTGCCAACAATCTA 58.439 40.909 0.00 0.00 35.37 1.98
1907 2413 3.957497 ACCAAACTGTGCCAACAATCTAA 59.043 39.130 0.00 0.00 35.37 2.10
1908 2414 4.588528 ACCAAACTGTGCCAACAATCTAAT 59.411 37.500 0.00 0.00 35.37 1.73
1909 2415 5.772672 ACCAAACTGTGCCAACAATCTAATA 59.227 36.000 0.00 0.00 35.37 0.98
1910 2416 6.266558 ACCAAACTGTGCCAACAATCTAATAA 59.733 34.615 0.00 0.00 35.37 1.40
1912 2418 7.276218 CCAAACTGTGCCAACAATCTAATAATG 59.724 37.037 0.00 0.00 35.37 1.90
1915 2421 7.985476 ACTGTGCCAACAATCTAATAATGTAC 58.015 34.615 0.00 0.00 35.37 2.90
1916 2422 7.829211 ACTGTGCCAACAATCTAATAATGTACT 59.171 33.333 0.00 0.00 35.37 2.73
1917 2423 9.325198 CTGTGCCAACAATCTAATAATGTACTA 57.675 33.333 0.00 0.00 35.37 1.82
1918 2424 9.104965 TGTGCCAACAATCTAATAATGTACTAC 57.895 33.333 0.00 0.00 31.82 2.73
1919 2425 9.326413 GTGCCAACAATCTAATAATGTACTACT 57.674 33.333 0.00 0.00 0.00 2.57
1951 2462 5.262455 AGTGCTATTCTCCTTCCCTTTTT 57.738 39.130 0.00 0.00 0.00 1.94
1952 2463 5.257262 AGTGCTATTCTCCTTCCCTTTTTC 58.743 41.667 0.00 0.00 0.00 2.29
1954 2465 4.292306 TGCTATTCTCCTTCCCTTTTTCCT 59.708 41.667 0.00 0.00 0.00 3.36
1955 2466 4.884744 GCTATTCTCCTTCCCTTTTTCCTC 59.115 45.833 0.00 0.00 0.00 3.71
1956 2467 5.339612 GCTATTCTCCTTCCCTTTTTCCTCT 60.340 44.000 0.00 0.00 0.00 3.69
1962 2473 3.562393 CCTTCCCTTTTTCCTCTTCTCCC 60.562 52.174 0.00 0.00 0.00 4.30
1965 2476 2.025793 CCCTTTTTCCTCTTCTCCCTCC 60.026 54.545 0.00 0.00 0.00 4.30
1971 2482 1.366082 TCCTCTTCTCCCTCCATGGAA 59.634 52.381 17.00 0.00 38.35 3.53
1976 2487 3.203040 TCTTCTCCCTCCATGGAAAATCC 59.797 47.826 17.00 0.00 38.35 3.01
2038 2551 1.744741 GTCAAGCAGAGGCCAGAGC 60.745 63.158 5.01 5.18 42.56 4.09
2065 2578 4.042062 TGGATGTTATGATGATGGAGACCC 59.958 45.833 0.00 0.00 0.00 4.46
2067 2580 4.694760 TGTTATGATGATGGAGACCCTG 57.305 45.455 0.00 0.00 0.00 4.45
2068 2581 3.181451 TGTTATGATGATGGAGACCCTGC 60.181 47.826 0.00 0.00 0.00 4.85
2069 2582 1.514983 ATGATGATGGAGACCCTGCA 58.485 50.000 0.00 0.00 36.05 4.41
2070 2583 0.543277 TGATGATGGAGACCCTGCAC 59.457 55.000 0.00 0.00 34.07 4.57
2071 2584 0.835941 GATGATGGAGACCCTGCACT 59.164 55.000 0.00 0.00 34.07 4.40
2072 2585 0.835941 ATGATGGAGACCCTGCACTC 59.164 55.000 0.00 0.00 34.07 3.51
2073 2586 0.545071 TGATGGAGACCCTGCACTCA 60.545 55.000 4.64 0.00 34.07 3.41
2074 2587 0.177604 GATGGAGACCCTGCACTCAG 59.822 60.000 4.64 0.00 34.07 3.35
2077 2590 0.398318 GGAGACCCTGCACTCAGTTT 59.602 55.000 4.64 0.00 38.66 2.66
2078 2591 1.202818 GGAGACCCTGCACTCAGTTTT 60.203 52.381 4.64 0.00 38.66 2.43
2079 2592 1.876156 GAGACCCTGCACTCAGTTTTG 59.124 52.381 0.00 0.00 38.66 2.44
2087 2612 0.675083 CACTCAGTTTTGCATGGCCA 59.325 50.000 8.56 8.56 0.00 5.36
2092 2617 1.664333 GTTTTGCATGGCCACCACG 60.664 57.895 8.16 0.00 35.80 4.94
2099 2624 1.600636 ATGGCCACCACGAACACAG 60.601 57.895 8.16 0.00 35.80 3.66
2119 2644 1.728971 GACATCGTGCTTCAGTTGAGG 59.271 52.381 0.00 0.00 0.00 3.86
2120 2645 1.070758 ACATCGTGCTTCAGTTGAGGT 59.929 47.619 0.00 0.00 0.00 3.85
2121 2646 2.299013 ACATCGTGCTTCAGTTGAGGTA 59.701 45.455 0.00 0.00 0.00 3.08
2122 2647 2.724977 TCGTGCTTCAGTTGAGGTAG 57.275 50.000 0.00 0.00 0.00 3.18
2133 2658 3.057174 CAGTTGAGGTAGTGGTGAGACTC 60.057 52.174 0.00 0.00 0.00 3.36
2177 2702 4.011023 TCGACAAGGGTTTTCACTTTCAA 58.989 39.130 0.00 0.00 41.26 2.69
2181 2706 4.401202 ACAAGGGTTTTCACTTTCAACGAT 59.599 37.500 0.00 0.00 41.26 3.73
2185 2710 6.001460 AGGGTTTTCACTTTCAACGATATGA 58.999 36.000 0.00 0.00 0.00 2.15
2187 2712 6.293735 GGGTTTTCACTTTCAACGATATGACA 60.294 38.462 0.00 0.00 0.00 3.58
2188 2713 6.797033 GGTTTTCACTTTCAACGATATGACAG 59.203 38.462 0.00 0.00 34.14 3.51
2189 2714 7.307751 GGTTTTCACTTTCAACGATATGACAGA 60.308 37.037 9.54 0.00 32.66 3.41
2190 2715 7.722795 TTTCACTTTCAACGATATGACAGAA 57.277 32.000 9.54 0.00 32.66 3.02
2193 2718 8.322906 TCACTTTCAACGATATGACAGAAAAT 57.677 30.769 9.54 0.00 32.66 1.82
2195 2720 8.843733 CACTTTCAACGATATGACAGAAAATTG 58.156 33.333 9.54 0.00 32.66 2.32
2196 2721 8.783093 ACTTTCAACGATATGACAGAAAATTGA 58.217 29.630 9.54 0.00 32.66 2.57
2198 2723 9.958234 TTTCAACGATATGACAGAAAATTGAAA 57.042 25.926 11.56 11.56 39.76 2.69
2209 2734 8.640651 TGACAGAAAATTGAAATGAATTCCTGA 58.359 29.630 2.27 0.00 37.22 3.86
2226 2751 4.253685 TCCTGAAAGATTTAGTTCCAGCG 58.746 43.478 0.00 0.00 34.07 5.18
2227 2752 4.020573 TCCTGAAAGATTTAGTTCCAGCGA 60.021 41.667 0.00 0.00 34.07 4.93
2228 2753 4.878397 CCTGAAAGATTTAGTTCCAGCGAT 59.122 41.667 0.00 0.00 34.07 4.58
2231 2756 6.842163 TGAAAGATTTAGTTCCAGCGATTTC 58.158 36.000 0.00 0.00 0.00 2.17
2232 2757 5.470845 AAGATTTAGTTCCAGCGATTTCG 57.529 39.130 0.00 0.00 43.27 3.46
2234 2759 4.935808 AGATTTAGTTCCAGCGATTTCGTT 59.064 37.500 1.55 0.00 42.22 3.85
2237 2762 3.268013 AGTTCCAGCGATTTCGTTTTG 57.732 42.857 1.55 0.00 42.22 2.44
2247 2790 3.115736 CGATTTCGTTTTGCGTTTCAGTC 59.884 43.478 0.00 0.00 42.13 3.51
2309 2852 5.514059 AAATGTTGAATTTCAAATCGCCG 57.486 34.783 13.21 0.00 38.22 6.46
2310 2853 2.323959 TGTTGAATTTCAAATCGCCGC 58.676 42.857 13.21 0.77 38.22 6.53
2311 2854 2.030363 TGTTGAATTTCAAATCGCCGCT 60.030 40.909 13.21 0.00 38.22 5.52
2312 2855 2.261037 TGAATTTCAAATCGCCGCTG 57.739 45.000 0.00 0.00 0.00 5.18
2313 2856 1.539388 TGAATTTCAAATCGCCGCTGT 59.461 42.857 0.00 0.00 0.00 4.40
2314 2857 2.030363 TGAATTTCAAATCGCCGCTGTT 60.030 40.909 0.00 0.00 0.00 3.16
2315 2858 2.262572 ATTTCAAATCGCCGCTGTTC 57.737 45.000 0.00 0.00 0.00 3.18
2316 2859 0.239879 TTTCAAATCGCCGCTGTTCC 59.760 50.000 0.00 0.00 0.00 3.62
2317 2860 1.906994 TTCAAATCGCCGCTGTTCCG 61.907 55.000 0.00 0.00 0.00 4.30
2324 2867 2.032071 CCGCTGTTCCGGTCCTTT 59.968 61.111 0.00 0.00 43.24 3.11
2325 2868 2.325082 CCGCTGTTCCGGTCCTTTG 61.325 63.158 0.00 0.00 43.24 2.77
2326 2869 1.301401 CGCTGTTCCGGTCCTTTGA 60.301 57.895 0.00 0.00 0.00 2.69
2327 2870 1.566018 CGCTGTTCCGGTCCTTTGAC 61.566 60.000 0.00 0.00 40.98 3.18
2345 2888 3.190874 TGACCCAAATGCAAAACGAAAC 58.809 40.909 0.00 0.00 0.00 2.78
2351 2894 0.318614 ATGCAAAACGAAACCGCTGG 60.319 50.000 0.00 0.00 0.00 4.85
2385 2928 4.602995 TCTGAAACCGAAATTCAAAACCG 58.397 39.130 0.00 0.00 36.43 4.44
2395 2938 2.615262 TTCAAAACCGTGGCGCCAAC 62.615 55.000 34.66 23.60 0.00 3.77
2466 4259 0.456221 ACGCAGAACCCATCTACTCG 59.544 55.000 0.00 0.00 36.32 4.18
2469 4262 1.804372 GCAGAACCCATCTACTCGCTG 60.804 57.143 0.00 0.00 36.32 5.18
2470 4263 1.115467 AGAACCCATCTACTCGCTGG 58.885 55.000 0.00 0.00 36.32 4.85
2471 4264 0.824759 GAACCCATCTACTCGCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
2472 4265 2.029623 GAACCCATCTACTCGCTGGTA 58.970 52.381 0.00 0.00 0.00 3.25
2473 4266 2.154567 ACCCATCTACTCGCTGGTAA 57.845 50.000 0.00 0.00 0.00 2.85
2474 4267 2.679082 ACCCATCTACTCGCTGGTAAT 58.321 47.619 0.00 0.00 0.00 1.89
2475 4268 3.039011 ACCCATCTACTCGCTGGTAATT 58.961 45.455 0.00 0.00 0.00 1.40
2477 4270 3.809832 CCCATCTACTCGCTGGTAATTTG 59.190 47.826 0.00 0.00 0.00 2.32
2478 4271 3.248602 CCATCTACTCGCTGGTAATTTGC 59.751 47.826 0.00 0.00 0.00 3.68
2479 4272 3.887621 TCTACTCGCTGGTAATTTGCT 57.112 42.857 0.00 0.00 0.00 3.91
2481 4274 3.932710 TCTACTCGCTGGTAATTTGCTTG 59.067 43.478 0.00 0.00 0.00 4.01
2482 4275 2.778299 ACTCGCTGGTAATTTGCTTGA 58.222 42.857 0.00 0.00 0.00 3.02
2483 4276 3.347216 ACTCGCTGGTAATTTGCTTGAT 58.653 40.909 0.00 0.00 0.00 2.57
2484 4277 3.375299 ACTCGCTGGTAATTTGCTTGATC 59.625 43.478 0.00 0.00 0.00 2.92
2485 4278 2.351418 TCGCTGGTAATTTGCTTGATCG 59.649 45.455 0.00 0.00 0.00 3.69
2486 4279 2.539547 CGCTGGTAATTTGCTTGATCGG 60.540 50.000 0.00 0.00 0.00 4.18
2490 4397 4.075682 TGGTAATTTGCTTGATCGGTTGA 58.924 39.130 0.00 0.00 0.00 3.18
2531 4438 5.191323 TGCATTAATCCCATTCCCACATTTT 59.809 36.000 0.00 0.00 0.00 1.82
2604 4513 9.498307 AAAAATAAATCTAAATCTAACCACGCG 57.502 29.630 3.53 3.53 0.00 6.01
2705 4665 2.915349 TGATCCTCTGAAGAAGCATGC 58.085 47.619 10.51 10.51 0.00 4.06
2706 4666 2.220313 GATCCTCTGAAGAAGCATGCC 58.780 52.381 15.66 0.00 0.00 4.40
2708 4668 1.562942 TCCTCTGAAGAAGCATGCCAT 59.437 47.619 15.66 3.12 0.00 4.40
2712 4672 3.159472 TCTGAAGAAGCATGCCATTGTT 58.841 40.909 15.66 7.97 0.00 2.83
2713 4673 3.057104 TCTGAAGAAGCATGCCATTGTTG 60.057 43.478 15.66 0.57 0.00 3.33
2716 4676 4.020928 TGAAGAAGCATGCCATTGTTGATT 60.021 37.500 15.66 0.00 0.00 2.57
2720 4680 5.180492 AGAAGCATGCCATTGTTGATTTTTG 59.820 36.000 15.66 0.00 0.00 2.44
2722 4682 3.502979 GCATGCCATTGTTGATTTTTGGT 59.497 39.130 6.36 0.00 0.00 3.67
2775 4735 3.521995 CTTCTCAAGAAGCTGCCGA 57.478 52.632 6.82 0.00 44.10 5.54
2776 4736 1.800805 CTTCTCAAGAAGCTGCCGAA 58.199 50.000 6.82 0.00 44.10 4.30
2891 4851 3.744719 CTCCCGTTCCTCGTCGCA 61.745 66.667 0.00 0.00 37.94 5.10
3341 5309 3.017581 AGGGCGGCCAAGATCCTT 61.018 61.111 31.59 3.02 0.00 3.36
3542 5526 2.677003 CGTGGACATGACCAACGCC 61.677 63.158 18.63 5.55 41.87 5.68
3551 5535 1.671054 GACCAACGCCAAGCAGCTA 60.671 57.895 0.00 0.00 0.00 3.32
3598 5582 1.933500 GCCTTGCTGAACAATGTGCAG 60.934 52.381 16.89 16.89 41.88 4.41
3613 5597 1.000731 GTGCAGAGTGCTCAGTTCTCT 59.999 52.381 0.00 0.00 45.31 3.10
3616 5600 2.736192 GCAGAGTGCTCAGTTCTCTTTC 59.264 50.000 1.82 0.00 40.96 2.62
3632 5616 9.430623 AGTTCTCTTTCTATGTTTCTTTCTAGC 57.569 33.333 0.00 0.00 0.00 3.42
3683 5667 6.569780 TCTTAGCGTGTAAATTCAGATAGCA 58.430 36.000 0.00 0.00 0.00 3.49
3699 5843 8.181904 TCAGATAGCAACATATCATCTACACA 57.818 34.615 0.00 0.00 35.07 3.72
3700 5844 8.810041 TCAGATAGCAACATATCATCTACACAT 58.190 33.333 0.00 0.00 35.07 3.21
3702 5846 8.810041 AGATAGCAACATATCATCTACACATGA 58.190 33.333 0.00 0.00 37.20 3.07
3707 5851 5.098211 ACATATCATCTACACATGATCGCG 58.902 41.667 0.00 0.00 41.70 5.87
3709 5853 1.066908 TCATCTACACATGATCGCGCA 59.933 47.619 8.75 0.00 0.00 6.09
3711 5855 1.770957 TCTACACATGATCGCGCATC 58.229 50.000 8.75 10.45 0.00 3.91
3713 5857 0.103937 TACACATGATCGCGCATCCA 59.896 50.000 8.75 0.93 0.00 3.41
3714 5858 0.533531 ACACATGATCGCGCATCCAT 60.534 50.000 8.75 3.70 0.00 3.41
3715 5859 0.110373 CACATGATCGCGCATCCATG 60.110 55.000 22.88 22.88 0.00 3.66
3716 5860 0.533531 ACATGATCGCGCATCCATGT 60.534 50.000 23.87 23.87 32.65 3.21
3717 5861 0.589708 CATGATCGCGCATCCATGTT 59.410 50.000 18.80 0.00 0.00 2.71
3718 5862 0.870393 ATGATCGCGCATCCATGTTC 59.130 50.000 8.75 0.00 0.00 3.18
3719 5863 0.179076 TGATCGCGCATCCATGTTCT 60.179 50.000 8.75 0.00 0.00 3.01
3720 5864 0.510359 GATCGCGCATCCATGTTCTC 59.490 55.000 8.75 0.00 0.00 2.87
3721 5865 1.217585 ATCGCGCATCCATGTTCTCG 61.218 55.000 8.75 0.00 0.00 4.04
3722 5866 2.874694 CGCGCATCCATGTTCTCGG 61.875 63.158 8.75 0.00 0.00 4.63
3723 5867 2.537560 GCGCATCCATGTTCTCGGG 61.538 63.158 0.30 0.00 0.00 5.14
3724 5868 1.153369 CGCATCCATGTTCTCGGGT 60.153 57.895 0.00 0.00 0.00 5.28
3725 5869 0.104120 CGCATCCATGTTCTCGGGTA 59.896 55.000 0.00 0.00 0.00 3.69
3726 5870 1.270305 CGCATCCATGTTCTCGGGTAT 60.270 52.381 0.00 0.00 0.00 2.73
3727 5871 2.806745 CGCATCCATGTTCTCGGGTATT 60.807 50.000 0.00 0.00 0.00 1.89
3728 5872 3.554129 CGCATCCATGTTCTCGGGTATTA 60.554 47.826 0.00 0.00 0.00 0.98
3753 5897 6.542370 AGTTCACAAGTTATAGCAAACACACT 59.458 34.615 0.00 0.00 0.00 3.55
3766 5910 4.384056 CAAACACACTGACTCTGGAAGAT 58.616 43.478 0.00 0.00 45.62 2.40
3777 5921 5.047448 TGACTCTGGAAGATTTCAGTGAGAG 60.047 44.000 9.37 0.00 45.62 3.20
3779 5923 3.580022 TCTGGAAGATTTCAGTGAGAGCA 59.420 43.478 1.45 0.00 38.67 4.26
3782 5926 5.319453 TGGAAGATTTCAGTGAGAGCAAAT 58.681 37.500 1.45 0.00 0.00 2.32
3787 5931 9.155975 GAAGATTTCAGTGAGAGCAAATAAGTA 57.844 33.333 1.45 0.00 0.00 2.24
3858 6005 4.703897 TGAACTTTCCTCTGACAACGAAT 58.296 39.130 0.00 0.00 0.00 3.34
3977 6125 3.521126 CCTTCTCCTTGATCTCCTGGAAA 59.479 47.826 0.00 0.00 0.00 3.13
4048 6202 5.569355 ACATGAATGAGTACCATGTCCAAA 58.431 37.500 0.00 0.00 45.25 3.28
4049 6203 6.009589 ACATGAATGAGTACCATGTCCAAAA 58.990 36.000 0.00 0.00 45.25 2.44
4070 6225 6.636454 AAAATGGGGATAGAGTGAGTGTAA 57.364 37.500 0.00 0.00 0.00 2.41
4119 6275 1.899814 TGGTGTACTCTGAAGGCGAAT 59.100 47.619 0.00 0.00 0.00 3.34
4249 6405 2.353323 TGATCTGCAGCATCAAGACAC 58.647 47.619 19.88 1.24 0.00 3.67
4250 6406 2.289819 TGATCTGCAGCATCAAGACACA 60.290 45.455 19.88 0.00 0.00 3.72
4281 6437 3.025287 ACCGAATGCCATTTTGTTCAC 57.975 42.857 0.00 0.00 0.00 3.18
4309 6465 0.940126 GTGGTGACTGTCACTTGCTG 59.060 55.000 32.66 0.00 46.19 4.41
4311 6467 0.815213 GGTGACTGTCACTTGCTGCA 60.815 55.000 32.66 0.00 46.19 4.41
4313 6469 0.178767 TGACTGTCACTTGCTGCACT 59.821 50.000 6.36 0.00 0.00 4.40
4349 6505 8.369218 ACAAAGCTTTTCATCCAGTTAATTTG 57.631 30.769 9.53 0.00 0.00 2.32
4350 6506 7.986889 ACAAAGCTTTTCATCCAGTTAATTTGT 59.013 29.630 9.53 0.00 32.75 2.83
4351 6507 7.951530 AAGCTTTTCATCCAGTTAATTTGTG 57.048 32.000 0.00 0.00 0.00 3.33
4352 6508 5.928264 AGCTTTTCATCCAGTTAATTTGTGC 59.072 36.000 0.00 0.00 0.00 4.57
4353 6509 5.164061 GCTTTTCATCCAGTTAATTTGTGCG 60.164 40.000 0.00 0.00 0.00 5.34
4354 6510 4.433186 TTCATCCAGTTAATTTGTGCGG 57.567 40.909 0.00 0.00 0.00 5.69
4362 6529 5.172934 CAGTTAATTTGTGCGGTACCTAGA 58.827 41.667 10.90 0.00 0.00 2.43
4367 6534 4.816786 TTTGTGCGGTACCTAGAAAAAC 57.183 40.909 10.90 0.00 0.00 2.43
4421 6588 4.212214 GGATCATTGCCTAGTTTAAGAGCG 59.788 45.833 0.00 0.00 0.00 5.03
4515 6683 1.485124 TTAGCCTAGTAGCAGCAGCA 58.515 50.000 3.17 0.00 45.49 4.41
4516 6684 1.035923 TAGCCTAGTAGCAGCAGCAG 58.964 55.000 3.17 0.00 45.49 4.24
4517 6685 0.975040 AGCCTAGTAGCAGCAGCAGT 60.975 55.000 3.17 0.00 45.49 4.40
4528 6696 2.921069 GCAGCAGCAGTGACAAATGAAG 60.921 50.000 0.00 0.00 41.58 3.02
4533 6701 4.633126 GCAGCAGTGACAAATGAAGAGATA 59.367 41.667 0.00 0.00 0.00 1.98
4553 6721 6.055588 AGATATTGGGTACACTTGCACATAC 58.944 40.000 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.873133 CTTGGACTAAGCTCCCGTAG 57.127 55.000 0.00 0.00 0.00 3.51
119 120 2.683859 CGCTCTGGTACGTGGACGA 61.684 63.158 6.12 0.00 43.02 4.20
192 218 0.179161 CATCGACGTCAGGTCAGACC 60.179 60.000 17.16 12.25 46.42 3.85
287 340 4.984161 TCATCGCACGCATGATATATATGG 59.016 41.667 0.00 0.00 0.00 2.74
334 387 3.609853 TGCTCGAACCAGCTGATAAATT 58.390 40.909 17.39 0.85 40.39 1.82
335 388 3.266510 TGCTCGAACCAGCTGATAAAT 57.733 42.857 17.39 0.00 40.39 1.40
353 406 9.740239 TTATGCTTCAATTCATTTCTAGATTGC 57.260 29.630 0.00 0.00 0.00 3.56
360 413 8.533657 TGGTTCATTATGCTTCAATTCATTTCT 58.466 29.630 0.00 0.00 0.00 2.52
364 417 6.576185 GGTGGTTCATTATGCTTCAATTCAT 58.424 36.000 0.00 0.00 0.00 2.57
375 428 3.494398 CCTCCCTACGGTGGTTCATTATG 60.494 52.174 0.00 0.00 37.92 1.90
379 432 1.623542 GCCTCCCTACGGTGGTTCAT 61.624 60.000 0.00 0.00 43.68 2.57
381 434 1.957765 GAGCCTCCCTACGGTGGTTC 61.958 65.000 1.20 1.20 43.20 3.62
389 442 2.578786 GTGACTAGAGAGCCTCCCTAC 58.421 57.143 0.00 0.00 0.00 3.18
405 458 6.874134 AGAGTAGTACACAATTTGATGGTGAC 59.126 38.462 2.79 0.00 36.42 3.67
409 530 8.948631 ATGTAGAGTAGTACACAATTTGATGG 57.051 34.615 2.79 0.00 35.74 3.51
420 541 5.821470 GTGCACTCCTATGTAGAGTAGTACA 59.179 44.000 10.32 0.00 42.69 2.90
432 670 1.935873 CAACCATCGTGCACTCCTATG 59.064 52.381 16.19 12.33 0.00 2.23
437 675 3.654201 TGCAACCATCGTGCACTC 58.346 55.556 16.19 0.00 46.76 3.51
442 680 2.981805 CAACTCAAATGCAACCATCGTG 59.018 45.455 0.00 0.00 0.00 4.35
482 721 1.288127 CAAGGCCAGCTGTTTCTGC 59.712 57.895 13.81 8.20 32.87 4.26
484 723 1.878102 CGTACAAGGCCAGCTGTTTCT 60.878 52.381 13.81 3.92 0.00 2.52
499 738 1.663379 CGATGGCCTCCTGTCGTACA 61.663 60.000 3.32 0.00 31.51 2.90
505 744 1.901085 GAACTCGATGGCCTCCTGT 59.099 57.895 3.32 0.00 0.00 4.00
506 745 1.227089 CGAACTCGATGGCCTCCTG 60.227 63.158 3.32 0.00 43.02 3.86
507 746 2.427245 CCGAACTCGATGGCCTCCT 61.427 63.158 3.32 0.00 43.02 3.69
610 849 3.960102 ACAAGGACAGCCAAGATCAAAAA 59.040 39.130 0.00 0.00 36.29 1.94
611 850 3.318839 CACAAGGACAGCCAAGATCAAAA 59.681 43.478 0.00 0.00 36.29 2.44
612 851 2.886523 CACAAGGACAGCCAAGATCAAA 59.113 45.455 0.00 0.00 36.29 2.69
613 852 2.507484 CACAAGGACAGCCAAGATCAA 58.493 47.619 0.00 0.00 36.29 2.57
614 853 1.271543 CCACAAGGACAGCCAAGATCA 60.272 52.381 0.00 0.00 36.89 2.92
615 854 1.271597 ACCACAAGGACAGCCAAGATC 60.272 52.381 0.00 0.00 38.69 2.75
618 857 1.799258 GCACCACAAGGACAGCCAAG 61.799 60.000 0.00 0.00 38.69 3.61
623 862 1.072331 ACTTAGGCACCACAAGGACAG 59.928 52.381 6.15 0.00 38.69 3.51
636 875 2.543777 TGTGTCACCTGAACTTAGGC 57.456 50.000 0.00 0.00 41.75 3.93
637 876 3.244561 ACCATGTGTCACCTGAACTTAGG 60.245 47.826 9.59 0.00 43.71 2.69
638 877 4.008074 ACCATGTGTCACCTGAACTTAG 57.992 45.455 9.59 0.00 0.00 2.18
639 878 4.431416 AACCATGTGTCACCTGAACTTA 57.569 40.909 9.59 0.00 0.00 2.24
640 879 3.297134 AACCATGTGTCACCTGAACTT 57.703 42.857 9.59 0.00 0.00 2.66
641 880 4.431416 TTAACCATGTGTCACCTGAACT 57.569 40.909 9.59 0.00 0.00 3.01
642 881 4.553938 CGTTTAACCATGTGTCACCTGAAC 60.554 45.833 9.59 5.46 0.00 3.18
643 882 3.562141 CGTTTAACCATGTGTCACCTGAA 59.438 43.478 9.59 0.00 0.00 3.02
644 883 3.135225 CGTTTAACCATGTGTCACCTGA 58.865 45.455 9.59 0.00 0.00 3.86
650 895 1.136169 GGCGACGTTTAACCATGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
684 929 1.361668 CGCGCAGATTAACCAGTGCT 61.362 55.000 8.75 0.00 35.49 4.40
685 930 1.060937 CGCGCAGATTAACCAGTGC 59.939 57.895 8.75 0.00 0.00 4.40
688 933 2.164663 TCGCGCGCAGATTAACCAG 61.165 57.895 32.61 10.59 0.00 4.00
689 934 2.125872 TCGCGCGCAGATTAACCA 60.126 55.556 32.61 0.00 0.00 3.67
690 935 2.320044 GTCGCGCGCAGATTAACC 59.680 61.111 32.61 12.49 0.00 2.85
693 938 2.582226 CCTGTCGCGCGCAGATTA 60.582 61.111 37.61 17.46 36.12 1.75
694 939 4.435436 TCCTGTCGCGCGCAGATT 62.435 61.111 37.61 0.00 36.12 2.40
705 950 2.359230 GTGGCCTGTGCTCCTGTC 60.359 66.667 3.32 0.00 37.74 3.51
707 952 1.970114 CTTGTGGCCTGTGCTCCTG 60.970 63.158 3.32 0.00 37.74 3.86
708 953 2.433446 CTTGTGGCCTGTGCTCCT 59.567 61.111 3.32 0.00 37.74 3.69
719 964 3.964875 GTGCGTGTGGCCTTGTGG 61.965 66.667 3.32 0.00 42.61 4.17
723 968 4.329545 ATCCGTGCGTGTGGCCTT 62.330 61.111 3.32 0.00 42.61 4.35
727 972 4.735132 ACCGATCCGTGCGTGTGG 62.735 66.667 0.00 0.00 0.00 4.17
728 973 3.179265 GACCGATCCGTGCGTGTG 61.179 66.667 0.00 0.00 0.00 3.82
730 975 3.385440 TACGACCGATCCGTGCGTG 62.385 63.158 15.85 0.00 40.76 5.34
731 976 3.104602 CTACGACCGATCCGTGCGT 62.105 63.158 5.85 10.05 40.76 5.24
733 978 1.585521 CACTACGACCGATCCGTGC 60.586 63.158 5.85 0.00 40.76 5.34
734 979 1.585521 GCACTACGACCGATCCGTG 60.586 63.158 5.85 0.00 40.76 4.94
735 980 2.042259 TGCACTACGACCGATCCGT 61.042 57.895 0.00 1.23 43.26 4.69
736 981 1.585521 GTGCACTACGACCGATCCG 60.586 63.158 10.32 0.00 0.00 4.18
737 982 4.396854 GTGCACTACGACCGATCC 57.603 61.111 10.32 0.00 0.00 3.36
772 1025 3.471244 GACAGCTATCGTCGCGCCT 62.471 63.158 0.00 0.00 0.00 5.52
810 1070 0.237498 GGTTGATTATAAGCGGCGGC 59.763 55.000 9.78 8.43 40.37 6.53
857 1117 1.541620 GGGTGGAGAGGGAGGGTTT 60.542 63.158 0.00 0.00 0.00 3.27
858 1118 2.125225 GGGTGGAGAGGGAGGGTT 59.875 66.667 0.00 0.00 0.00 4.11
925 1189 4.588951 GGGAAGAAGAAATGAAAGTTGGGT 59.411 41.667 0.00 0.00 0.00 4.51
1083 1353 4.180946 CTCTCCACCTCCGACGCG 62.181 72.222 3.53 3.53 0.00 6.01
1312 1582 1.665916 GCGAGAACTCACAGCAGCA 60.666 57.895 0.00 0.00 0.00 4.41
1315 1585 2.734723 GCGCGAGAACTCACAGCA 60.735 61.111 12.10 0.00 0.00 4.41
1320 1590 4.435436 ATGGCGCGCGAGAACTCA 62.435 61.111 37.18 19.80 0.00 3.41
1334 1604 4.111016 CAGCACAGCACGGCATGG 62.111 66.667 0.00 0.00 0.00 3.66
1335 1605 3.359523 ACAGCACAGCACGGCATG 61.360 61.111 0.00 0.00 0.00 4.06
1336 1606 3.359523 CACAGCACAGCACGGCAT 61.360 61.111 0.00 0.00 0.00 4.40
1337 1607 4.854924 ACACAGCACAGCACGGCA 62.855 61.111 0.00 0.00 0.00 5.69
1338 1608 4.017877 GACACAGCACAGCACGGC 62.018 66.667 0.00 0.00 0.00 5.68
1340 1610 2.588596 TGGACACAGCACAGCACG 60.589 61.111 0.00 0.00 0.00 5.34
1353 1623 3.752222 AGACCGATCGTATCATACTGGAC 59.248 47.826 15.09 0.00 0.00 4.02
1354 1624 4.001652 GAGACCGATCGTATCATACTGGA 58.998 47.826 15.09 0.00 32.68 3.86
1355 1625 3.127203 GGAGACCGATCGTATCATACTGG 59.873 52.174 15.09 0.00 34.18 4.00
1372 1643 2.570135 GAAGATCAATGGGCAGGAGAC 58.430 52.381 0.00 0.00 0.00 3.36
1375 1646 0.552848 GGGAAGATCAATGGGCAGGA 59.447 55.000 0.00 0.00 0.00 3.86
1383 1658 2.214376 TTTGCACGGGGAAGATCAAT 57.786 45.000 0.00 0.00 0.00 2.57
1384 1659 2.091541 GATTTGCACGGGGAAGATCAA 58.908 47.619 0.00 0.00 0.00 2.57
1434 1709 1.858091 GACCATGATACACTGCTCGG 58.142 55.000 0.00 0.00 0.00 4.63
1446 1721 1.083806 GCATGCGAGAACGACCATGA 61.084 55.000 0.00 0.00 40.05 3.07
1456 1731 3.838271 GTCGGGGAGCATGCGAGA 61.838 66.667 13.01 5.81 0.00 4.04
1459 1734 3.274586 CATGTCGGGGAGCATGCG 61.275 66.667 13.01 0.00 36.49 4.73
1485 1760 9.520204 GAGAAAAAGAAGATCACATGTGAAAAA 57.480 29.630 31.00 10.08 43.58 1.94
1509 1784 4.827835 TCCGTGGAATCATACTAGAAGGAG 59.172 45.833 0.00 0.00 0.00 3.69
1522 1797 2.418976 GGTTAGTGCTTTCCGTGGAATC 59.581 50.000 1.47 0.00 33.79 2.52
1613 1932 3.367703 GCATGTTGAGGAATTCTTGTGGG 60.368 47.826 5.23 0.00 0.00 4.61
1665 1984 2.340328 CCAAAGGTTAGCACGGGCC 61.340 63.158 5.73 0.00 42.56 5.80
1698 2017 2.418746 CGCAGCTAATCCAACACTAGGT 60.419 50.000 0.00 0.00 0.00 3.08
1704 2023 2.169561 TGATACCGCAGCTAATCCAACA 59.830 45.455 0.00 0.00 0.00 3.33
1715 2034 3.443099 TGTGATTCTCTGATACCGCAG 57.557 47.619 0.00 0.00 37.24 5.18
1722 2041 4.232188 AGCCAACATGTGATTCTCTGAT 57.768 40.909 0.00 0.00 0.00 2.90
1734 2053 3.374220 TTTCTGCTCAAAGCCAACATG 57.626 42.857 0.00 0.00 41.51 3.21
1741 2060 2.030540 TGCTGACATTTCTGCTCAAAGC 60.031 45.455 11.39 0.00 44.81 3.51
1749 2068 5.658468 TCAGATAGAGTGCTGACATTTCTG 58.342 41.667 0.00 0.00 36.31 3.02
1750 2069 5.929058 TCAGATAGAGTGCTGACATTTCT 57.071 39.130 0.00 0.00 36.31 2.52
1764 2083 9.920133 GAATTATTGTATGCAGAGTCAGATAGA 57.080 33.333 0.00 0.00 0.00 1.98
1796 2116 6.461231 GCCTAATCATCCAACGAACTACTACT 60.461 42.308 0.00 0.00 0.00 2.57
1797 2117 5.690857 GCCTAATCATCCAACGAACTACTAC 59.309 44.000 0.00 0.00 0.00 2.73
1798 2118 5.361571 TGCCTAATCATCCAACGAACTACTA 59.638 40.000 0.00 0.00 0.00 1.82
1874 2380 2.344441 CACAGTTTGGTATGTAGCGTCG 59.656 50.000 0.00 0.00 0.00 5.12
1917 2423 9.594936 AAGGAGAATAGCACTTCATATAGTAGT 57.405 33.333 1.74 0.00 0.00 2.73
1919 2425 9.026121 GGAAGGAGAATAGCACTTCATATAGTA 57.974 37.037 0.00 0.00 40.72 1.82
1920 2426 7.038658 GGGAAGGAGAATAGCACTTCATATAGT 60.039 40.741 0.00 0.00 40.72 2.12
1921 2427 7.180051 AGGGAAGGAGAATAGCACTTCATATAG 59.820 40.741 0.00 0.00 40.72 1.31
1922 2428 7.019388 AGGGAAGGAGAATAGCACTTCATATA 58.981 38.462 0.00 0.00 40.72 0.86
1923 2429 5.848921 AGGGAAGGAGAATAGCACTTCATAT 59.151 40.000 0.00 0.00 40.72 1.78
1924 2430 5.219739 AGGGAAGGAGAATAGCACTTCATA 58.780 41.667 0.00 0.00 40.72 2.15
1925 2431 4.043596 AGGGAAGGAGAATAGCACTTCAT 58.956 43.478 0.00 0.00 40.72 2.57
1926 2432 3.454858 AGGGAAGGAGAATAGCACTTCA 58.545 45.455 0.00 0.00 40.72 3.02
1927 2433 4.495690 AAGGGAAGGAGAATAGCACTTC 57.504 45.455 0.00 0.00 38.80 3.01
1928 2434 4.936685 AAAGGGAAGGAGAATAGCACTT 57.063 40.909 0.00 0.00 0.00 3.16
1929 2435 4.936685 AAAAGGGAAGGAGAATAGCACT 57.063 40.909 0.00 0.00 0.00 4.40
1930 2436 4.399618 GGAAAAAGGGAAGGAGAATAGCAC 59.600 45.833 0.00 0.00 0.00 4.40
1931 2437 4.292306 AGGAAAAAGGGAAGGAGAATAGCA 59.708 41.667 0.00 0.00 0.00 3.49
1932 2438 4.861196 AGGAAAAAGGGAAGGAGAATAGC 58.139 43.478 0.00 0.00 0.00 2.97
1933 2439 6.320434 AGAGGAAAAAGGGAAGGAGAATAG 57.680 41.667 0.00 0.00 0.00 1.73
1934 2440 6.505700 AGAAGAGGAAAAAGGGAAGGAGAATA 59.494 38.462 0.00 0.00 0.00 1.75
1935 2441 5.314573 AGAAGAGGAAAAAGGGAAGGAGAAT 59.685 40.000 0.00 0.00 0.00 2.40
1936 2442 4.665483 AGAAGAGGAAAAAGGGAAGGAGAA 59.335 41.667 0.00 0.00 0.00 2.87
1937 2443 4.243643 AGAAGAGGAAAAAGGGAAGGAGA 58.756 43.478 0.00 0.00 0.00 3.71
1938 2444 4.566697 GGAGAAGAGGAAAAAGGGAAGGAG 60.567 50.000 0.00 0.00 0.00 3.69
1941 2447 3.332187 AGGGAGAAGAGGAAAAAGGGAAG 59.668 47.826 0.00 0.00 0.00 3.46
1951 2462 1.018840 TCCATGGAGGGAGAAGAGGA 58.981 55.000 11.44 0.00 38.24 3.71
1952 2463 1.885049 TTCCATGGAGGGAGAAGAGG 58.115 55.000 15.53 0.00 38.42 3.69
1954 2465 3.203040 GGATTTTCCATGGAGGGAGAAGA 59.797 47.826 15.53 0.00 38.42 2.87
1955 2466 3.203934 AGGATTTTCCATGGAGGGAGAAG 59.796 47.826 15.53 0.00 39.61 2.85
1956 2467 3.053395 CAGGATTTTCCATGGAGGGAGAA 60.053 47.826 15.53 2.82 39.61 2.87
1962 2473 2.449137 AGGCAGGATTTTCCATGGAG 57.551 50.000 15.53 2.30 39.61 3.86
1965 2476 7.227156 ACTATAGTTAGGCAGGATTTTCCATG 58.773 38.462 0.00 0.00 39.61 3.66
1971 2482 8.086143 TGTGTTACTATAGTTAGGCAGGATTT 57.914 34.615 11.40 0.00 0.00 2.17
1976 2487 6.201044 GCACATGTGTTACTATAGTTAGGCAG 59.799 42.308 26.01 0.00 0.00 4.85
2038 2551 6.204301 GTCTCCATCATCATAACATCCACTTG 59.796 42.308 0.00 0.00 0.00 3.16
2067 2580 0.668401 GGCCATGCAAAACTGAGTGC 60.668 55.000 0.00 0.00 41.29 4.40
2068 2581 0.675083 TGGCCATGCAAAACTGAGTG 59.325 50.000 0.00 0.00 0.00 3.51
2069 2582 0.675633 GTGGCCATGCAAAACTGAGT 59.324 50.000 9.72 0.00 0.00 3.41
2070 2583 0.037975 GGTGGCCATGCAAAACTGAG 60.038 55.000 9.72 0.00 0.00 3.35
2071 2584 0.758310 TGGTGGCCATGCAAAACTGA 60.758 50.000 9.72 0.00 0.00 3.41
2072 2585 0.600782 GTGGTGGCCATGCAAAACTG 60.601 55.000 9.72 0.00 35.28 3.16
2073 2586 1.747774 GTGGTGGCCATGCAAAACT 59.252 52.632 9.72 0.00 35.28 2.66
2074 2587 1.664333 CGTGGTGGCCATGCAAAAC 60.664 57.895 9.72 0.30 35.28 2.43
2077 2590 2.203408 TTCGTGGTGGCCATGCAA 60.203 55.556 9.72 0.00 40.13 4.08
2078 2591 2.983030 GTTCGTGGTGGCCATGCA 60.983 61.111 9.72 0.00 40.13 3.96
2079 2592 2.983030 TGTTCGTGGTGGCCATGC 60.983 61.111 9.72 0.00 40.13 4.06
2082 2606 2.203139 CTGTGTTCGTGGTGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
2084 2608 0.884704 ATGTCTGTGTTCGTGGTGGC 60.885 55.000 0.00 0.00 0.00 5.01
2087 2612 0.387929 ACGATGTCTGTGTTCGTGGT 59.612 50.000 0.00 0.00 43.80 4.16
2092 2617 2.135139 TGAAGCACGATGTCTGTGTTC 58.865 47.619 0.00 0.00 39.53 3.18
2099 2624 1.728971 CCTCAACTGAAGCACGATGTC 59.271 52.381 0.00 0.00 0.00 3.06
2119 2644 2.035961 TGCACTTGAGTCTCACCACTAC 59.964 50.000 0.78 0.00 0.00 2.73
2120 2645 2.035961 GTGCACTTGAGTCTCACCACTA 59.964 50.000 10.32 0.00 0.00 2.74
2121 2646 1.123077 TGCACTTGAGTCTCACCACT 58.877 50.000 0.78 0.00 0.00 4.00
2122 2647 1.221414 GTGCACTTGAGTCTCACCAC 58.779 55.000 10.32 4.47 0.00 4.16
2133 2658 1.386748 CACTGTCGTATCGTGCACTTG 59.613 52.381 16.19 0.00 0.00 3.16
2185 2710 9.835389 TTTCAGGAATTCATTTCAATTTTCTGT 57.165 25.926 7.93 0.00 35.94 3.41
2198 2723 8.884124 TGGAACTAAATCTTTCAGGAATTCAT 57.116 30.769 7.93 0.00 0.00 2.57
2205 2730 4.253685 TCGCTGGAACTAAATCTTTCAGG 58.746 43.478 0.00 0.00 0.00 3.86
2207 2732 6.402118 CGAAATCGCTGGAACTAAATCTTTCA 60.402 38.462 0.00 0.00 0.00 2.69
2209 2734 5.411669 ACGAAATCGCTGGAACTAAATCTTT 59.588 36.000 2.15 0.00 44.43 2.52
2212 2737 4.859629 ACGAAATCGCTGGAACTAAATC 57.140 40.909 2.15 0.00 44.43 2.17
2213 2738 5.622770 AAACGAAATCGCTGGAACTAAAT 57.377 34.783 2.15 0.00 44.43 1.40
2216 2741 3.364565 GCAAAACGAAATCGCTGGAACTA 60.365 43.478 2.15 0.00 44.43 2.24
2217 2742 2.604614 GCAAAACGAAATCGCTGGAACT 60.605 45.455 2.15 0.00 44.43 3.01
2218 2743 1.713932 GCAAAACGAAATCGCTGGAAC 59.286 47.619 2.15 0.00 44.43 3.62
2219 2744 2.044888 GCAAAACGAAATCGCTGGAA 57.955 45.000 2.15 0.00 44.43 3.53
2220 2745 3.765349 GCAAAACGAAATCGCTGGA 57.235 47.368 2.15 0.00 44.43 3.86
2247 2790 2.583739 TCATTTGAATTCTTGTGCGCG 58.416 42.857 0.00 0.00 0.00 6.86
2285 2828 6.361899 CGGCGATTTGAAATTCAACATTTTT 58.638 32.000 8.06 0.00 35.89 1.94
2286 2829 5.614449 GCGGCGATTTGAAATTCAACATTTT 60.614 36.000 12.98 0.00 35.89 1.82
2287 2830 4.143137 GCGGCGATTTGAAATTCAACATTT 60.143 37.500 12.98 0.00 35.89 2.32
2288 2831 3.367630 GCGGCGATTTGAAATTCAACATT 59.632 39.130 12.98 0.00 35.89 2.71
2289 2832 2.923020 GCGGCGATTTGAAATTCAACAT 59.077 40.909 12.98 5.64 35.89 2.71
2290 2833 2.030363 AGCGGCGATTTGAAATTCAACA 60.030 40.909 12.98 0.93 35.89 3.33
2291 2834 2.342354 CAGCGGCGATTTGAAATTCAAC 59.658 45.455 12.98 0.00 35.89 3.18
2292 2835 2.030363 ACAGCGGCGATTTGAAATTCAA 60.030 40.909 12.98 4.03 34.03 2.69
2293 2836 1.539388 ACAGCGGCGATTTGAAATTCA 59.461 42.857 12.98 0.00 0.00 2.57
2294 2837 2.262572 ACAGCGGCGATTTGAAATTC 57.737 45.000 12.98 0.00 0.00 2.17
2295 2838 2.595386 GAACAGCGGCGATTTGAAATT 58.405 42.857 12.98 0.00 0.00 1.82
2296 2839 1.135402 GGAACAGCGGCGATTTGAAAT 60.135 47.619 12.98 0.00 0.00 2.17
2297 2840 0.239879 GGAACAGCGGCGATTTGAAA 59.760 50.000 12.98 0.00 0.00 2.69
2298 2841 1.873165 GGAACAGCGGCGATTTGAA 59.127 52.632 12.98 0.00 0.00 2.69
2299 2842 2.387445 CGGAACAGCGGCGATTTGA 61.387 57.895 12.98 0.00 0.00 2.69
2300 2843 2.098298 CGGAACAGCGGCGATTTG 59.902 61.111 12.98 8.10 0.00 2.32
2301 2844 3.124921 CCGGAACAGCGGCGATTT 61.125 61.111 12.98 0.93 0.00 2.17
2302 2845 4.388499 ACCGGAACAGCGGCGATT 62.388 61.111 12.98 0.00 0.00 3.34
2303 2846 4.814294 GACCGGAACAGCGGCGAT 62.814 66.667 12.98 0.00 0.00 4.58
2306 2849 4.699522 AAGGACCGGAACAGCGGC 62.700 66.667 9.46 0.00 0.00 6.53
2307 2850 2.032071 AAAGGACCGGAACAGCGG 59.968 61.111 9.46 0.00 0.00 5.52
2308 2851 1.301401 TCAAAGGACCGGAACAGCG 60.301 57.895 9.46 0.00 0.00 5.18
2309 2852 2.244946 GTCAAAGGACCGGAACAGC 58.755 57.895 9.46 0.00 38.12 4.40
2318 2861 3.467374 TTTGCATTTGGGTCAAAGGAC 57.533 42.857 8.87 0.00 37.32 3.85
2319 2862 3.739519 CGTTTTGCATTTGGGTCAAAGGA 60.740 43.478 8.87 0.00 37.32 3.36
2320 2863 2.543430 CGTTTTGCATTTGGGTCAAAGG 59.457 45.455 0.00 1.33 36.76 3.11
2321 2864 3.452474 TCGTTTTGCATTTGGGTCAAAG 58.548 40.909 0.00 0.00 36.76 2.77
2322 2865 3.526931 TCGTTTTGCATTTGGGTCAAA 57.473 38.095 0.00 0.00 37.75 2.69
2323 2866 3.526931 TTCGTTTTGCATTTGGGTCAA 57.473 38.095 0.00 0.00 0.00 3.18
2324 2867 3.190874 GTTTCGTTTTGCATTTGGGTCA 58.809 40.909 0.00 0.00 0.00 4.02
2325 2868 2.542178 GGTTTCGTTTTGCATTTGGGTC 59.458 45.455 0.00 0.00 0.00 4.46
2326 2869 2.556257 GGTTTCGTTTTGCATTTGGGT 58.444 42.857 0.00 0.00 0.00 4.51
2327 2870 1.524776 CGGTTTCGTTTTGCATTTGGG 59.475 47.619 0.00 0.00 0.00 4.12
2328 2871 1.070909 GCGGTTTCGTTTTGCATTTGG 60.071 47.619 0.00 0.00 38.89 3.28
2329 2872 1.857837 AGCGGTTTCGTTTTGCATTTG 59.142 42.857 0.00 0.00 38.89 2.32
2330 2873 1.857837 CAGCGGTTTCGTTTTGCATTT 59.142 42.857 0.00 0.00 38.89 2.32
2331 2874 1.486439 CAGCGGTTTCGTTTTGCATT 58.514 45.000 0.00 0.00 38.89 3.56
2332 2875 0.318614 CCAGCGGTTTCGTTTTGCAT 60.319 50.000 0.00 0.00 38.89 3.96
2333 2876 1.064946 CCAGCGGTTTCGTTTTGCA 59.935 52.632 0.00 0.00 38.89 4.08
2334 2877 0.248702 TTCCAGCGGTTTCGTTTTGC 60.249 50.000 0.00 0.00 38.89 3.68
2345 2888 4.253685 TCAGAAAGATTTAGTTCCAGCGG 58.746 43.478 0.00 0.00 0.00 5.52
2351 2894 9.678941 AATTTCGGTTTCAGAAAGATTTAGTTC 57.321 29.630 0.00 0.00 40.39 3.01
2395 2938 0.876342 GGATTCGTTAGGCAGGCGAG 60.876 60.000 0.00 0.00 36.00 5.03
2466 4259 2.423538 ACCGATCAAGCAAATTACCAGC 59.576 45.455 0.00 0.00 0.00 4.85
2469 4262 4.695217 TCAACCGATCAAGCAAATTACC 57.305 40.909 0.00 0.00 0.00 2.85
2481 4274 6.258160 CAAACACTATTTGGATCAACCGATC 58.742 40.000 0.00 0.00 46.34 3.69
2482 4275 6.194796 CAAACACTATTTGGATCAACCGAT 57.805 37.500 0.00 0.00 42.61 4.18
2483 4276 5.621197 CAAACACTATTTGGATCAACCGA 57.379 39.130 0.00 0.00 42.61 4.69
2496 4403 5.268387 TGGGATTAATGCACCAAACACTAT 58.732 37.500 9.34 0.00 0.00 2.12
2531 4438 5.215252 ACGAGGAAGAAGAACTGATTGAA 57.785 39.130 0.00 0.00 0.00 2.69
2582 4491 5.756347 TGCGCGTGGTTAGATTTAGATTTAT 59.244 36.000 8.43 0.00 0.00 1.40
2583 4492 5.110598 TGCGCGTGGTTAGATTTAGATTTA 58.889 37.500 8.43 0.00 0.00 1.40
2584 4493 3.936453 TGCGCGTGGTTAGATTTAGATTT 59.064 39.130 8.43 0.00 0.00 2.17
2585 4494 3.527533 TGCGCGTGGTTAGATTTAGATT 58.472 40.909 8.43 0.00 0.00 2.40
2586 4495 3.173668 TGCGCGTGGTTAGATTTAGAT 57.826 42.857 8.43 0.00 0.00 1.98
2587 4496 2.658373 TGCGCGTGGTTAGATTTAGA 57.342 45.000 8.43 0.00 0.00 2.10
2588 4497 4.743151 TCTTATGCGCGTGGTTAGATTTAG 59.257 41.667 13.61 0.00 0.00 1.85
2589 4498 4.684877 TCTTATGCGCGTGGTTAGATTTA 58.315 39.130 13.61 0.00 0.00 1.40
2649 4558 4.082300 TCACACAACACAAGTGCTGAAAAT 60.082 37.500 10.28 0.00 40.59 1.82
2657 4566 3.437428 CCACAATCACACAACACAAGTG 58.563 45.455 0.00 0.00 42.56 3.16
2705 4665 7.551035 TCTGAAAACCAAAAATCAACAATGG 57.449 32.000 0.00 0.00 37.19 3.16
2706 4666 9.276397 GTTTCTGAAAACCAAAAATCAACAATG 57.724 29.630 4.09 0.00 39.10 2.82
2708 4668 8.383318 TGTTTCTGAAAACCAAAAATCAACAA 57.617 26.923 4.09 0.00 43.44 2.83
2712 4672 7.118971 CACCTTGTTTCTGAAAACCAAAAATCA 59.881 33.333 4.09 0.00 43.44 2.57
2713 4673 7.463544 CACCTTGTTTCTGAAAACCAAAAATC 58.536 34.615 4.09 0.00 43.44 2.17
2716 4676 4.693095 GCACCTTGTTTCTGAAAACCAAAA 59.307 37.500 4.09 0.00 43.44 2.44
2720 4680 3.186909 GTGCACCTTGTTTCTGAAAACC 58.813 45.455 5.22 0.00 43.44 3.27
2722 4682 4.734398 ATGTGCACCTTGTTTCTGAAAA 57.266 36.364 15.69 0.00 0.00 2.29
2759 4719 0.671781 GCTTCGGCAGCTTCTTGAGA 60.672 55.000 0.00 0.00 46.27 3.27
2775 4735 1.421268 TGTTGACAGGTCCATGAGCTT 59.579 47.619 0.00 0.00 38.40 3.74
2776 4736 1.059098 TGTTGACAGGTCCATGAGCT 58.941 50.000 0.00 0.00 41.33 4.09
2813 4773 1.152839 GGAGACGGAGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
3030 4990 0.669077 GTCGTCTCCGTATGCTCCAT 59.331 55.000 0.00 0.00 35.01 3.41
3037 4997 1.437772 CTCCGCTGTCGTCTCCGTAT 61.438 60.000 0.00 0.00 35.01 3.06
3341 5309 0.031585 CGTCGTCCTTGAACCACTGA 59.968 55.000 0.00 0.00 0.00 3.41
3542 5526 2.404995 GCTGGCCACTAGCTGCTTG 61.405 63.158 7.79 8.80 43.05 4.01
3576 5560 1.933500 GCACATTGTTCAGCAAGGCAG 60.934 52.381 0.00 0.00 42.07 4.85
3598 5582 5.719173 ACATAGAAAGAGAACTGAGCACTC 58.281 41.667 0.00 0.00 0.00 3.51
3613 5597 8.902540 TGACAAGCTAGAAAGAAACATAGAAA 57.097 30.769 0.00 0.00 0.00 2.52
3683 5667 5.574443 CGCGATCATGTGTAGATGATATGTT 59.426 40.000 0.00 0.00 42.10 2.71
3696 5840 0.110373 CATGGATGCGCGATCATGTG 60.110 55.000 12.10 12.62 31.91 3.21
3697 5841 0.533531 ACATGGATGCGCGATCATGT 60.534 50.000 25.81 25.81 32.47 3.21
3699 5843 0.870393 GAACATGGATGCGCGATCAT 59.130 50.000 12.10 4.12 31.91 2.45
3700 5844 0.179076 AGAACATGGATGCGCGATCA 60.179 50.000 12.10 0.00 31.91 2.92
3702 5846 1.217585 CGAGAACATGGATGCGCGAT 61.218 55.000 12.10 0.00 0.00 4.58
3707 5851 2.550830 ATACCCGAGAACATGGATGC 57.449 50.000 0.00 0.00 0.00 3.91
3709 5853 5.365605 TGAACTAATACCCGAGAACATGGAT 59.634 40.000 0.00 0.00 0.00 3.41
3711 5855 4.809426 GTGAACTAATACCCGAGAACATGG 59.191 45.833 0.00 0.00 0.00 3.66
3713 5857 5.670792 TGTGAACTAATACCCGAGAACAT 57.329 39.130 0.00 0.00 0.00 2.71
3714 5858 5.011329 ACTTGTGAACTAATACCCGAGAACA 59.989 40.000 0.00 0.00 0.00 3.18
3715 5859 5.476614 ACTTGTGAACTAATACCCGAGAAC 58.523 41.667 0.00 0.00 0.00 3.01
3716 5860 5.733620 ACTTGTGAACTAATACCCGAGAA 57.266 39.130 0.00 0.00 0.00 2.87
3717 5861 5.733620 AACTTGTGAACTAATACCCGAGA 57.266 39.130 0.00 0.00 0.00 4.04
3718 5862 7.381678 GCTATAACTTGTGAACTAATACCCGAG 59.618 40.741 0.00 0.00 0.00 4.63
3719 5863 7.147863 TGCTATAACTTGTGAACTAATACCCGA 60.148 37.037 0.00 0.00 0.00 5.14
3720 5864 6.982141 TGCTATAACTTGTGAACTAATACCCG 59.018 38.462 0.00 0.00 0.00 5.28
3721 5865 8.726870 TTGCTATAACTTGTGAACTAATACCC 57.273 34.615 0.00 0.00 0.00 3.69
3722 5866 9.983804 GTTTGCTATAACTTGTGAACTAATACC 57.016 33.333 0.00 0.00 0.00 2.73
3725 5869 9.062524 TGTGTTTGCTATAACTTGTGAACTAAT 57.937 29.630 0.00 0.00 0.00 1.73
3726 5870 8.339714 GTGTGTTTGCTATAACTTGTGAACTAA 58.660 33.333 0.00 0.00 0.00 2.24
3727 5871 7.713507 AGTGTGTTTGCTATAACTTGTGAACTA 59.286 33.333 0.00 0.00 0.00 2.24
3728 5872 6.542370 AGTGTGTTTGCTATAACTTGTGAACT 59.458 34.615 0.00 0.00 0.00 3.01
3753 5897 4.835056 TCTCACTGAAATCTTCCAGAGTCA 59.165 41.667 0.00 0.00 34.65 3.41
3766 5910 8.846943 TGAATACTTATTTGCTCTCACTGAAA 57.153 30.769 0.00 0.00 0.00 2.69
3805 5952 5.411977 TCCTGTAACGAAAACACTTTCACAA 59.588 36.000 0.00 0.00 40.96 3.33
3858 6005 7.738524 AGACCTGAGAGTACCTACCATATACTA 59.261 40.741 0.00 0.00 29.25 1.82
3947 6095 1.374758 CAAGGAGAAGGCGAACGCT 60.375 57.895 18.14 0.00 41.60 5.07
4031 6179 4.711355 CCCATTTTTGGACATGGTACTCAT 59.289 41.667 0.00 0.00 38.72 2.90
4048 6202 5.964477 TCTTACACTCACTCTATCCCCATTT 59.036 40.000 0.00 0.00 0.00 2.32
4049 6203 5.529289 TCTTACACTCACTCTATCCCCATT 58.471 41.667 0.00 0.00 0.00 3.16
4070 6225 1.563410 CCCAGCTCCTCCATTTTCTCT 59.437 52.381 0.00 0.00 0.00 3.10
4119 6275 2.060383 CATGCTCCAGGGAGTCCGA 61.060 63.158 16.31 0.00 43.70 4.55
4249 6405 2.384382 GCATTCGGTTGACAAGTTGTG 58.616 47.619 14.57 0.00 0.00 3.33
4250 6406 1.336755 GGCATTCGGTTGACAAGTTGT 59.663 47.619 8.61 8.61 0.00 3.32
4281 6437 4.051922 GTGACAGTCACCACTAGTTTCTG 58.948 47.826 21.52 0.68 41.37 3.02
4309 6465 2.926165 CTTTGTAAGCTGAGCAAGTGC 58.074 47.619 7.39 0.00 42.49 4.40
4335 6491 3.848272 ACCGCACAAATTAACTGGATG 57.152 42.857 0.00 0.00 0.00 3.51
4349 6505 4.035441 TGTTTGTTTTTCTAGGTACCGCAC 59.965 41.667 6.18 0.00 0.00 5.34
4350 6506 4.197750 TGTTTGTTTTTCTAGGTACCGCA 58.802 39.130 6.18 0.00 0.00 5.69
4351 6507 4.816786 TGTTTGTTTTTCTAGGTACCGC 57.183 40.909 6.18 0.00 0.00 5.68
4352 6508 7.380333 GGAAAATGTTTGTTTTTCTAGGTACCG 59.620 37.037 6.18 0.00 40.98 4.02
4353 6509 8.418662 AGGAAAATGTTTGTTTTTCTAGGTACC 58.581 33.333 2.73 2.73 40.98 3.34
4362 6529 7.885922 ACTTTGGGTAGGAAAATGTTTGTTTTT 59.114 29.630 0.00 0.00 31.80 1.94
4367 6534 5.236263 GCAACTTTGGGTAGGAAAATGTTTG 59.764 40.000 0.00 0.00 0.00 2.93
4515 6683 6.725364 ACCCAATATCTCTTCATTTGTCACT 58.275 36.000 0.00 0.00 0.00 3.41
4516 6684 7.552687 TGTACCCAATATCTCTTCATTTGTCAC 59.447 37.037 0.00 0.00 0.00 3.67
4517 6685 7.552687 GTGTACCCAATATCTCTTCATTTGTCA 59.447 37.037 0.00 0.00 0.00 3.58
4528 6696 4.513442 TGTGCAAGTGTACCCAATATCTC 58.487 43.478 0.00 0.00 0.00 2.75
4533 6701 3.352648 GGTATGTGCAAGTGTACCCAAT 58.647 45.455 0.00 0.00 32.32 3.16
4553 6721 8.930846 ATAGAATATTTTGAGTTGATCCTGGG 57.069 34.615 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.