Multiple sequence alignment - TraesCS1A01G411700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G411700 chr1A 100.000 3545 0 0 1 3545 572334012 572337556 0.000000e+00 6547
1 TraesCS1A01G411700 chr1A 89.831 118 12 0 1273 1390 485362728 485362611 6.130000e-33 152
2 TraesCS1A01G411700 chr1B 93.011 1302 60 17 589 1863 662783846 662785143 0.000000e+00 1871
3 TraesCS1A01G411700 chr1B 92.204 1257 63 14 1867 3099 662785184 662786429 0.000000e+00 1746
4 TraesCS1A01G411700 chr1B 88.983 118 13 0 1273 1390 518185839 518185722 2.850000e-31 147
5 TraesCS1A01G411700 chr1B 88.421 95 5 2 3105 3194 662786470 662786563 3.740000e-20 110
6 TraesCS1A01G411700 chr1D 93.399 1212 58 6 673 1863 476557754 476558964 0.000000e+00 1775
7 TraesCS1A01G411700 chr1D 85.851 1046 93 22 2053 3068 476559382 476560402 0.000000e+00 1061
8 TraesCS1A01G411700 chr1D 90.123 81 8 0 1867 1947 476559054 476559134 4.840000e-19 106
9 TraesCS1A01G411700 chr3B 82.975 558 90 4 1 554 32486429 32486985 1.900000e-137 499
10 TraesCS1A01G411700 chr3B 82.321 560 94 4 1 556 32504570 32505128 6.880000e-132 481
11 TraesCS1A01G411700 chr3B 82.321 560 94 4 1 556 32555301 32555859 6.880000e-132 481
12 TraesCS1A01G411700 chr6D 83.364 535 84 4 25 555 46942763 46943296 1.140000e-134 490
13 TraesCS1A01G411700 chr6D 81.152 573 102 4 1 567 16105413 16104841 4.170000e-124 455
14 TraesCS1A01G411700 chr5D 81.647 583 98 4 1 575 536240094 536239513 3.200000e-130 475
15 TraesCS1A01G411700 chr7D 81.501 573 96 9 1 567 52260751 52260183 2.490000e-126 462
16 TraesCS1A01G411700 chr7D 81.593 565 93 7 1 557 133886985 133887546 1.160000e-124 457
17 TraesCS1A01G411700 chr3A 80.796 578 105 5 1 573 64085806 64085230 6.980000e-122 448
18 TraesCS1A01G411700 chr3A 84.673 398 37 12 1240 1614 714034455 714034851 3.340000e-100 375
19 TraesCS1A01G411700 chr3A 84.171 398 39 12 1240 1614 113363078 113363474 7.230000e-97 364
20 TraesCS1A01G411700 chr3A 91.795 195 15 1 1240 1434 298755239 298755046 1.620000e-68 270
21 TraesCS1A01G411700 chr3A 89.024 164 17 1 1454 1617 298754965 298754803 6.000000e-48 202
22 TraesCS1A01G411700 chr7A 85.279 394 35 14 1240 1610 95111863 95111470 5.550000e-103 385
23 TraesCS1A01G411700 chr5A 84.422 398 38 12 1240 1614 617622344 617622740 1.550000e-98 370


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G411700 chr1A 572334012 572337556 3544 False 6547.000000 6547 100.000 1 3545 1 chr1A.!!$F1 3544
1 TraesCS1A01G411700 chr1B 662783846 662786563 2717 False 1242.333333 1871 91.212 589 3194 3 chr1B.!!$F1 2605
2 TraesCS1A01G411700 chr1D 476557754 476560402 2648 False 980.666667 1775 89.791 673 3068 3 chr1D.!!$F1 2395
3 TraesCS1A01G411700 chr3B 32486429 32486985 556 False 499.000000 499 82.975 1 554 1 chr3B.!!$F1 553
4 TraesCS1A01G411700 chr3B 32504570 32505128 558 False 481.000000 481 82.321 1 556 1 chr3B.!!$F2 555
5 TraesCS1A01G411700 chr3B 32555301 32555859 558 False 481.000000 481 82.321 1 556 1 chr3B.!!$F3 555
6 TraesCS1A01G411700 chr6D 46942763 46943296 533 False 490.000000 490 83.364 25 555 1 chr6D.!!$F1 530
7 TraesCS1A01G411700 chr6D 16104841 16105413 572 True 455.000000 455 81.152 1 567 1 chr6D.!!$R1 566
8 TraesCS1A01G411700 chr5D 536239513 536240094 581 True 475.000000 475 81.647 1 575 1 chr5D.!!$R1 574
9 TraesCS1A01G411700 chr7D 52260183 52260751 568 True 462.000000 462 81.501 1 567 1 chr7D.!!$R1 566
10 TraesCS1A01G411700 chr7D 133886985 133887546 561 False 457.000000 457 81.593 1 557 1 chr7D.!!$F1 556
11 TraesCS1A01G411700 chr3A 64085230 64085806 576 True 448.000000 448 80.796 1 573 1 chr3A.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 464 0.108756 ACCTTCGGCTCGCTTAAGTC 60.109 55.0 4.02 0.0 0.00 3.01 F
1234 1249 0.177604 CTCTGATCCGCTCCAGCTTT 59.822 55.0 0.00 0.0 39.32 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1514 0.037734 CTGTACCCACCCAACCTTCC 59.962 60.0 0.0 0.0 0.0 3.46 R
3170 3514 1.093972 TGTAATGGCAATGACCTGCG 58.906 50.0 0.0 0.0 43.6 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.623723 GTGACTTTAGGGCCATGGGA 59.376 55.000 15.13 0.00 0.00 4.37
33 34 4.181010 CCATGGGAGCGGAGTGGG 62.181 72.222 2.85 0.00 0.00 4.61
72 73 1.543871 GGAGGGCTCCGTTTTTACACA 60.544 52.381 0.00 0.00 40.36 3.72
74 75 2.418976 GAGGGCTCCGTTTTTACACATC 59.581 50.000 0.00 0.00 0.00 3.06
100 101 3.065648 TCGACTTTTGTTAGGGTTTGTGC 59.934 43.478 0.00 0.00 0.00 4.57
115 116 1.133809 TGTGCCCTGCTTAGGAAGGT 61.134 55.000 0.00 0.00 36.50 3.50
149 150 4.443457 CGGCTCCTTGAAGATGGAATAAGA 60.443 45.833 0.00 0.00 31.23 2.10
157 158 7.421147 CCTTGAAGATGGAATAAGATTCTCCCT 60.421 40.741 0.00 0.00 0.00 4.20
172 173 3.728373 CCTGCCTAGCCCCCGTTT 61.728 66.667 0.00 0.00 0.00 3.60
188 189 1.671850 CGTTTCGGTGGTGCATCTAGT 60.672 52.381 0.00 0.00 0.00 2.57
194 195 2.223735 CGGTGGTGCATCTAGTATCGTT 60.224 50.000 0.00 0.00 0.00 3.85
214 215 1.594833 GTGGGCGTGTGGAGATGTA 59.405 57.895 0.00 0.00 0.00 2.29
218 219 1.139058 GGGCGTGTGGAGATGTATCTT 59.861 52.381 0.00 0.00 37.25 2.40
239 240 1.740380 CGGCGGATCTGTCTTTGATGT 60.740 52.381 4.31 0.00 0.00 3.06
276 279 3.165890 GTCGTCATTCATGTACGTTCGA 58.834 45.455 0.00 0.00 34.92 3.71
279 282 4.093261 TCGTCATTCATGTACGTTCGACTA 59.907 41.667 0.00 0.00 34.92 2.59
314 320 4.288670 TCCTTTTGATCTACGCTACTCG 57.711 45.455 0.00 0.00 45.38 4.18
315 321 3.943381 TCCTTTTGATCTACGCTACTCGA 59.057 43.478 0.00 0.00 41.67 4.04
317 329 4.438336 CCTTTTGATCTACGCTACTCGACA 60.438 45.833 0.00 0.00 41.67 4.35
320 332 1.868498 GATCTACGCTACTCGACAGCT 59.132 52.381 11.41 0.00 41.67 4.24
324 336 1.162698 ACGCTACTCGACAGCTGTTA 58.837 50.000 22.65 11.65 41.67 2.41
330 342 4.389077 GCTACTCGACAGCTGTTATTGTTT 59.611 41.667 22.65 4.75 36.07 2.83
333 345 4.574828 ACTCGACAGCTGTTATTGTTTTGT 59.425 37.500 22.65 7.24 0.00 2.83
349 361 4.950475 TGTTTTGTTGTGTTGGTCCTATGA 59.050 37.500 0.00 0.00 0.00 2.15
415 427 3.072468 CGGCTCCGGTAAGGGACA 61.072 66.667 0.00 0.00 41.52 4.02
419 431 1.987855 CTCCGGTAAGGGACAGGCA 60.988 63.158 0.00 0.00 42.75 4.75
432 444 1.968017 CAGGCAATGACAGTGGCGT 60.968 57.895 21.56 9.22 45.70 5.68
433 445 0.673333 CAGGCAATGACAGTGGCGTA 60.673 55.000 21.56 0.00 45.70 4.42
448 460 1.430632 CGTACCTTCGGCTCGCTTA 59.569 57.895 0.00 0.00 0.00 3.09
452 464 0.108756 ACCTTCGGCTCGCTTAAGTC 60.109 55.000 4.02 0.00 0.00 3.01
473 485 1.812235 TTGTAGTCGTCGCTAGGTGA 58.188 50.000 0.00 0.00 0.00 4.02
523 535 7.661127 TTATTTGTAGTGTTCGTTGTGCTAT 57.339 32.000 0.00 0.00 0.00 2.97
530 542 4.568359 AGTGTTCGTTGTGCTATCATGATC 59.432 41.667 12.53 0.00 0.00 2.92
535 548 3.798878 CGTTGTGCTATCATGATCGAAGT 59.201 43.478 12.53 0.00 0.00 3.01
559 572 9.136323 AGTTGAATAGATTGGAAGTTTTCTTGT 57.864 29.630 0.00 0.00 40.61 3.16
603 616 9.860898 GCTTTTCAATTCAAAGATACTATGGTT 57.139 29.630 9.84 0.00 33.69 3.67
653 666 1.569708 AGCCACAACAAACAAATGCG 58.430 45.000 0.00 0.00 0.00 4.73
654 667 1.135915 AGCCACAACAAACAAATGCGA 59.864 42.857 0.00 0.00 0.00 5.10
671 684 8.226543 CAAATGCGATTTGTTTAAAGCTAAGA 57.773 30.769 11.27 0.00 43.47 2.10
692 705 0.813184 AGAAATCGGACGGTTAGCGA 59.187 50.000 11.70 0.00 0.00 4.93
713 726 1.281867 CAGGCCCTTGTTGGTAGATCA 59.718 52.381 0.00 0.00 0.00 2.92
875 888 0.470833 CCATCTCCGTCCATCTCCCT 60.471 60.000 0.00 0.00 0.00 4.20
878 891 1.231641 CTCCGTCCATCTCCCTCCT 59.768 63.158 0.00 0.00 0.00 3.69
892 905 3.236896 TCCCTCCTAATTAGGTAAGCGG 58.763 50.000 27.14 19.93 44.02 5.52
1128 1143 1.448540 CAAGATCGCCAAGGACGCT 60.449 57.895 0.00 0.00 0.00 5.07
1234 1249 0.177604 CTCTGATCCGCTCCAGCTTT 59.822 55.000 0.00 0.00 39.32 3.51
1252 1267 4.099824 GCTTTCTTAGTACGAGCTCACTC 58.900 47.826 15.40 2.73 39.75 3.51
1253 1268 4.379603 GCTTTCTTAGTACGAGCTCACTCA 60.380 45.833 15.40 1.26 43.66 3.41
1434 1453 6.726490 ATTCATTCATTCATTCCCCTCTTG 57.274 37.500 0.00 0.00 0.00 3.02
1475 1512 4.637534 CGAGGAATTCTGAATTGGTGTGAT 59.362 41.667 19.59 0.00 0.00 3.06
1476 1513 5.124457 CGAGGAATTCTGAATTGGTGTGATT 59.876 40.000 19.59 0.00 0.00 2.57
1477 1514 6.276832 AGGAATTCTGAATTGGTGTGATTG 57.723 37.500 19.59 0.00 0.00 2.67
1502 1539 2.040679 GGTTGGGTGGGTACAGTATTGT 59.959 50.000 0.00 0.00 41.39 2.71
1523 1561 6.729690 TGTTGTTGGGAATTCTGAATTTCT 57.270 33.333 18.36 0.00 0.00 2.52
1524 1562 7.123355 TGTTGTTGGGAATTCTGAATTTCTT 57.877 32.000 18.36 0.00 0.00 2.52
1533 1571 2.807676 TCTGAATTTCTTCAAGGGGCC 58.192 47.619 0.00 0.00 40.78 5.80
1544 1582 1.001631 AAGGGGCCCTGTATTTGCC 59.998 57.895 29.60 0.26 44.59 4.52
1574 1612 3.070159 GCTGCAGTGATATGGTTCCTAGA 59.930 47.826 16.64 0.00 0.00 2.43
1578 1616 4.342378 GCAGTGATATGGTTCCTAGACTCA 59.658 45.833 0.00 0.00 0.00 3.41
1673 1711 2.376518 AGGATGTCACTCACATGGGTTT 59.623 45.455 0.00 0.00 46.53 3.27
1674 1712 2.489329 GGATGTCACTCACATGGGTTTG 59.511 50.000 0.00 0.00 46.53 2.93
1675 1713 1.317613 TGTCACTCACATGGGTTTGC 58.682 50.000 0.00 0.00 0.00 3.68
1677 1715 1.537202 GTCACTCACATGGGTTTGCTC 59.463 52.381 0.00 0.00 0.00 4.26
1681 1720 0.321564 TCACATGGGTTTGCTCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
1702 1741 1.358877 CGTGTCGATGAATGCCTGAA 58.641 50.000 0.00 0.00 0.00 3.02
1760 1799 6.016024 TCTGCAAACTAAACGTCCTAAGAGTA 60.016 38.462 0.00 0.00 0.00 2.59
1863 1903 9.546428 AATTTTCCTAATTTTGTGACTGAAAGG 57.454 29.630 0.00 0.00 39.30 3.11
1872 1998 7.528996 TTTTGTGACTGAAAGGATGATGATT 57.471 32.000 0.00 0.00 39.30 2.57
1901 2027 6.096001 CCTCAGTTTTGCCTTCATTAAGCTAT 59.904 38.462 0.00 0.00 0.00 2.97
1902 2028 7.088589 TCAGTTTTGCCTTCATTAAGCTATC 57.911 36.000 0.00 0.00 0.00 2.08
1908 2034 5.605534 TGCCTTCATTAAGCTATCAGTCTC 58.394 41.667 0.00 0.00 0.00 3.36
1915 2041 2.428544 AGCTATCAGTCTCTGACGGT 57.571 50.000 1.44 0.29 43.63 4.83
1980 2194 8.958043 GTGTTACAAGCTTATTCAACTGAAAAG 58.042 33.333 0.00 3.83 37.61 2.27
2026 2287 4.512571 ACGCACGATGTTACCTTTTTAGTT 59.487 37.500 0.00 0.00 0.00 2.24
2027 2288 5.007921 ACGCACGATGTTACCTTTTTAGTTT 59.992 36.000 0.00 0.00 0.00 2.66
2028 2289 5.910723 CGCACGATGTTACCTTTTTAGTTTT 59.089 36.000 0.00 0.00 0.00 2.43
2219 2494 5.940470 GGAGGTATATTCATTGCCTTACTGG 59.060 44.000 0.00 0.00 39.35 4.00
2240 2515 1.207089 TCTTCCATGTTTCGGCGATCT 59.793 47.619 11.76 0.00 0.00 2.75
2268 2543 7.929941 ATCTTAGGTTCAAGTTTCCTGAATC 57.070 36.000 0.00 0.00 33.34 2.52
2280 2555 8.449397 CAAGTTTCCTGAATCTACTCTTCATTG 58.551 37.037 0.00 0.00 32.50 2.82
2330 2605 0.742281 TCGAAATCTGAGCAGGCTGC 60.742 55.000 31.56 31.56 45.46 5.25
2459 2735 3.304293 GCTATTAGGCTTTTTGCTTTGCG 59.696 43.478 0.00 0.00 42.39 4.85
2472 2749 2.613595 TGCTTTGCGTAATCTGGCTATG 59.386 45.455 0.00 0.00 0.00 2.23
2570 2847 2.747989 GAGGATGATACTGATCGGCGTA 59.252 50.000 6.85 0.00 34.49 4.42
2670 2949 3.332919 CACTCTGCTTAGTTCTGTGCAT 58.667 45.455 0.00 0.00 34.79 3.96
2673 2952 0.798159 TGCTTAGTTCTGTGCATGCG 59.202 50.000 14.09 0.00 0.00 4.73
2676 2955 0.323302 TTAGTTCTGTGCATGCGGGA 59.677 50.000 14.09 8.05 0.00 5.14
2690 2969 3.916359 TGCGGGATACTTGAAATACCA 57.084 42.857 0.00 0.00 0.00 3.25
2697 2976 6.092670 CGGGATACTTGAAATACCATGCTATG 59.907 42.308 0.00 0.00 0.00 2.23
2810 3089 2.478879 CGCCTTTTCCACGTCAACTTTT 60.479 45.455 0.00 0.00 0.00 2.27
2847 3148 9.167311 GACTGTAATAAGATGATGAACAGGTTT 57.833 33.333 0.00 0.00 37.71 3.27
2915 3216 0.952280 ATGCAGCTGCTGATGTATGC 59.048 50.000 36.61 16.53 42.66 3.14
2924 3225 3.419943 TGCTGATGTATGCTTTTGACCA 58.580 40.909 0.00 0.00 0.00 4.02
2953 3254 9.871238 ATAACTTGTCATCGTATTGTTTAGACT 57.129 29.630 0.00 0.00 0.00 3.24
3054 3355 3.363970 GGCTGTCTTGTTATGTGTTGTCG 60.364 47.826 0.00 0.00 0.00 4.35
3085 3389 5.163612 GGAAACTGAAGGAAATGCTATCACC 60.164 44.000 0.00 0.00 0.00 4.02
3088 3392 4.141620 ACTGAAGGAAATGCTATCACCGAT 60.142 41.667 0.00 0.00 0.00 4.18
3133 3472 0.250901 TTGAGTTTCCCAGCTGCTCC 60.251 55.000 8.66 0.00 0.00 4.70
3134 3473 1.377856 GAGTTTCCCAGCTGCTCCC 60.378 63.158 8.66 0.00 0.00 4.30
3163 3507 6.950842 ACTGATTCAGACTTGGTATTCATCA 58.049 36.000 20.33 0.00 35.18 3.07
3164 3508 6.820656 ACTGATTCAGACTTGGTATTCATCAC 59.179 38.462 20.33 0.00 35.18 3.06
3170 3514 3.347216 ACTTGGTATTCATCACAGCACC 58.653 45.455 0.00 0.00 0.00 5.01
3190 3534 1.677576 CGCAGGTCATTGCCATTACAT 59.322 47.619 0.97 0.00 41.01 2.29
3191 3535 2.542205 CGCAGGTCATTGCCATTACATG 60.542 50.000 0.00 0.00 41.01 3.21
3192 3536 2.800629 GCAGGTCATTGCCATTACATGC 60.801 50.000 6.06 6.06 41.58 4.06
3193 3537 2.427812 CAGGTCATTGCCATTACATGCA 59.572 45.455 0.00 0.00 35.27 3.96
3194 3538 2.428171 AGGTCATTGCCATTACATGCAC 59.572 45.455 0.00 0.00 37.18 4.57
3195 3539 2.453080 GTCATTGCCATTACATGCACG 58.547 47.619 0.00 0.00 37.18 5.34
3196 3540 2.097304 GTCATTGCCATTACATGCACGA 59.903 45.455 0.00 0.00 37.18 4.35
3197 3541 2.950975 TCATTGCCATTACATGCACGAT 59.049 40.909 0.00 0.00 37.18 3.73
3198 3542 3.380954 TCATTGCCATTACATGCACGATT 59.619 39.130 0.00 0.00 37.18 3.34
3199 3543 3.865011 TTGCCATTACATGCACGATTT 57.135 38.095 0.00 0.00 37.18 2.17
3200 3544 4.972514 TTGCCATTACATGCACGATTTA 57.027 36.364 0.00 0.00 37.18 1.40
3201 3545 4.285807 TGCCATTACATGCACGATTTAC 57.714 40.909 0.00 0.00 31.31 2.01
3202 3546 3.944650 TGCCATTACATGCACGATTTACT 59.055 39.130 0.00 0.00 31.31 2.24
3203 3547 4.397730 TGCCATTACATGCACGATTTACTT 59.602 37.500 0.00 0.00 31.31 2.24
3204 3548 4.970003 GCCATTACATGCACGATTTACTTC 59.030 41.667 0.00 0.00 0.00 3.01
3205 3549 5.510671 CCATTACATGCACGATTTACTTCC 58.489 41.667 0.00 0.00 0.00 3.46
3206 3550 5.505654 CCATTACATGCACGATTTACTTCCC 60.506 44.000 0.00 0.00 0.00 3.97
3207 3551 3.066291 ACATGCACGATTTACTTCCCA 57.934 42.857 0.00 0.00 0.00 4.37
3208 3552 3.417101 ACATGCACGATTTACTTCCCAA 58.583 40.909 0.00 0.00 0.00 4.12
3209 3553 3.190535 ACATGCACGATTTACTTCCCAAC 59.809 43.478 0.00 0.00 0.00 3.77
3210 3554 2.852449 TGCACGATTTACTTCCCAACA 58.148 42.857 0.00 0.00 0.00 3.33
3211 3555 3.417101 TGCACGATTTACTTCCCAACAT 58.583 40.909 0.00 0.00 0.00 2.71
3212 3556 3.823873 TGCACGATTTACTTCCCAACATT 59.176 39.130 0.00 0.00 0.00 2.71
3213 3557 4.279671 TGCACGATTTACTTCCCAACATTT 59.720 37.500 0.00 0.00 0.00 2.32
3214 3558 4.621034 GCACGATTTACTTCCCAACATTTG 59.379 41.667 0.00 0.00 0.00 2.32
3215 3559 5.768317 CACGATTTACTTCCCAACATTTGT 58.232 37.500 0.00 0.00 0.00 2.83
3216 3560 5.629020 CACGATTTACTTCCCAACATTTGTG 59.371 40.000 0.00 0.00 0.00 3.33
3217 3561 5.160641 CGATTTACTTCCCAACATTTGTGG 58.839 41.667 0.00 0.00 0.00 4.17
3218 3562 5.278758 CGATTTACTTCCCAACATTTGTGGT 60.279 40.000 0.00 0.00 0.00 4.16
3219 3563 5.941555 TTTACTTCCCAACATTTGTGGTT 57.058 34.783 0.00 0.00 0.00 3.67
3220 3564 5.523438 TTACTTCCCAACATTTGTGGTTC 57.477 39.130 0.00 0.00 0.00 3.62
3221 3565 2.698274 ACTTCCCAACATTTGTGGTTCC 59.302 45.455 0.00 0.00 0.00 3.62
3222 3566 2.461300 TCCCAACATTTGTGGTTCCA 57.539 45.000 0.00 0.00 0.00 3.53
3223 3567 2.315176 TCCCAACATTTGTGGTTCCAG 58.685 47.619 0.00 0.00 0.00 3.86
3224 3568 2.038659 CCCAACATTTGTGGTTCCAGT 58.961 47.619 0.00 0.00 0.00 4.00
3225 3569 2.224018 CCCAACATTTGTGGTTCCAGTG 60.224 50.000 0.00 0.00 0.00 3.66
3226 3570 2.692557 CCAACATTTGTGGTTCCAGTGA 59.307 45.455 0.00 0.00 0.00 3.41
3227 3571 3.131933 CCAACATTTGTGGTTCCAGTGAA 59.868 43.478 0.00 0.00 0.00 3.18
3228 3572 4.382470 CCAACATTTGTGGTTCCAGTGAAA 60.382 41.667 0.00 0.00 30.79 2.69
3229 3573 5.358922 CAACATTTGTGGTTCCAGTGAAAT 58.641 37.500 0.00 0.00 30.79 2.17
3230 3574 5.612725 ACATTTGTGGTTCCAGTGAAATT 57.387 34.783 0.00 0.00 30.79 1.82
3231 3575 5.988287 ACATTTGTGGTTCCAGTGAAATTT 58.012 33.333 0.00 0.00 30.79 1.82
3232 3576 5.816777 ACATTTGTGGTTCCAGTGAAATTTG 59.183 36.000 0.00 0.00 30.79 2.32
3233 3577 5.667539 TTTGTGGTTCCAGTGAAATTTGA 57.332 34.783 0.00 0.00 30.79 2.69
3234 3578 4.647424 TGTGGTTCCAGTGAAATTTGAC 57.353 40.909 0.00 0.00 30.79 3.18
3235 3579 4.019858 TGTGGTTCCAGTGAAATTTGACA 58.980 39.130 10.48 0.00 30.79 3.58
3236 3580 4.142271 TGTGGTTCCAGTGAAATTTGACAC 60.142 41.667 10.48 6.26 37.30 3.67
3237 3581 3.066064 TGGTTCCAGTGAAATTTGACACG 59.934 43.478 10.48 0.86 41.22 4.49
3238 3582 3.066203 GGTTCCAGTGAAATTTGACACGT 59.934 43.478 10.48 0.00 41.22 4.49
3239 3583 4.439563 GGTTCCAGTGAAATTTGACACGTT 60.440 41.667 10.48 0.00 41.22 3.99
3240 3584 4.545823 TCCAGTGAAATTTGACACGTTC 57.454 40.909 10.48 0.00 41.22 3.95
3241 3585 4.196193 TCCAGTGAAATTTGACACGTTCT 58.804 39.130 10.48 0.00 41.22 3.01
3242 3586 4.035091 TCCAGTGAAATTTGACACGTTCTG 59.965 41.667 10.48 0.00 41.22 3.02
3243 3587 4.201910 CCAGTGAAATTTGACACGTTCTGT 60.202 41.667 10.48 0.00 41.22 3.41
3244 3588 5.331902 CAGTGAAATTTGACACGTTCTGTT 58.668 37.500 10.48 0.00 41.22 3.16
3245 3589 5.227805 CAGTGAAATTTGACACGTTCTGTTG 59.772 40.000 10.48 0.00 41.22 3.33
3246 3590 5.123186 AGTGAAATTTGACACGTTCTGTTGA 59.877 36.000 10.48 0.00 41.22 3.18
3247 3591 5.971202 GTGAAATTTGACACGTTCTGTTGAT 59.029 36.000 2.65 0.00 31.03 2.57
3248 3592 6.472163 GTGAAATTTGACACGTTCTGTTGATT 59.528 34.615 2.65 0.00 31.03 2.57
3249 3593 7.009174 GTGAAATTTGACACGTTCTGTTGATTT 59.991 33.333 2.65 0.00 31.03 2.17
3250 3594 8.184848 TGAAATTTGACACGTTCTGTTGATTTA 58.815 29.630 0.00 0.00 31.03 1.40
3251 3595 7.908193 AATTTGACACGTTCTGTTGATTTAC 57.092 32.000 0.00 0.00 31.03 2.01
3252 3596 6.424176 TTTGACACGTTCTGTTGATTTACA 57.576 33.333 0.00 0.00 31.03 2.41
3253 3597 6.612247 TTGACACGTTCTGTTGATTTACAT 57.388 33.333 0.00 0.00 31.03 2.29
3254 3598 6.612247 TGACACGTTCTGTTGATTTACATT 57.388 33.333 0.00 0.00 31.03 2.71
3255 3599 7.022055 TGACACGTTCTGTTGATTTACATTT 57.978 32.000 0.00 0.00 31.03 2.32
3256 3600 7.476667 TGACACGTTCTGTTGATTTACATTTT 58.523 30.769 0.00 0.00 31.03 1.82
3257 3601 7.430793 TGACACGTTCTGTTGATTTACATTTTG 59.569 33.333 0.00 0.00 31.03 2.44
3258 3602 7.476667 ACACGTTCTGTTGATTTACATTTTGA 58.523 30.769 0.00 0.00 0.00 2.69
3259 3603 7.431084 ACACGTTCTGTTGATTTACATTTTGAC 59.569 33.333 0.00 0.00 0.00 3.18
3260 3604 6.915843 ACGTTCTGTTGATTTACATTTTGACC 59.084 34.615 0.00 0.00 0.00 4.02
3261 3605 6.086241 CGTTCTGTTGATTTACATTTTGACCG 59.914 38.462 0.00 0.00 0.00 4.79
3262 3606 6.627395 TCTGTTGATTTACATTTTGACCGT 57.373 33.333 0.00 0.00 0.00 4.83
3263 3607 6.664515 TCTGTTGATTTACATTTTGACCGTC 58.335 36.000 0.00 0.00 0.00 4.79
3264 3608 6.261158 TCTGTTGATTTACATTTTGACCGTCA 59.739 34.615 0.00 0.00 0.00 4.35
3265 3609 6.434596 TGTTGATTTACATTTTGACCGTCAG 58.565 36.000 0.64 0.00 0.00 3.51
3266 3610 6.038825 TGTTGATTTACATTTTGACCGTCAGT 59.961 34.615 0.64 0.00 0.00 3.41
3267 3611 6.627395 TGATTTACATTTTGACCGTCAGTT 57.373 33.333 0.64 0.00 0.00 3.16
3268 3612 7.033530 TGATTTACATTTTGACCGTCAGTTT 57.966 32.000 0.64 0.00 0.00 2.66
3269 3613 7.484975 TGATTTACATTTTGACCGTCAGTTTT 58.515 30.769 0.64 0.00 0.00 2.43
3270 3614 7.646130 TGATTTACATTTTGACCGTCAGTTTTC 59.354 33.333 0.64 0.00 0.00 2.29
3271 3615 6.687081 TTACATTTTGACCGTCAGTTTTCT 57.313 33.333 0.64 0.00 0.00 2.52
3272 3616 5.576447 ACATTTTGACCGTCAGTTTTCTT 57.424 34.783 0.64 0.00 0.00 2.52
3273 3617 5.578776 ACATTTTGACCGTCAGTTTTCTTC 58.421 37.500 0.64 0.00 0.00 2.87
3274 3618 5.357032 ACATTTTGACCGTCAGTTTTCTTCT 59.643 36.000 0.64 0.00 0.00 2.85
3275 3619 4.875544 TTTGACCGTCAGTTTTCTTCTG 57.124 40.909 0.64 0.00 0.00 3.02
3276 3620 3.812156 TGACCGTCAGTTTTCTTCTGA 57.188 42.857 0.00 0.00 39.25 3.27
3277 3621 4.336889 TGACCGTCAGTTTTCTTCTGAT 57.663 40.909 0.00 0.00 42.63 2.90
3278 3622 5.462530 TGACCGTCAGTTTTCTTCTGATA 57.537 39.130 0.00 0.00 42.63 2.15
3279 3623 5.470368 TGACCGTCAGTTTTCTTCTGATAG 58.530 41.667 0.00 0.00 42.63 2.08
3280 3624 5.243060 TGACCGTCAGTTTTCTTCTGATAGA 59.757 40.000 0.00 0.00 42.63 1.98
3281 3625 6.097915 ACCGTCAGTTTTCTTCTGATAGAA 57.902 37.500 0.00 0.00 42.63 2.10
3282 3626 6.522054 ACCGTCAGTTTTCTTCTGATAGAAA 58.478 36.000 9.46 9.46 42.63 2.52
3283 3627 6.424207 ACCGTCAGTTTTCTTCTGATAGAAAC 59.576 38.462 11.78 7.78 42.24 2.78
3284 3628 6.647067 CCGTCAGTTTTCTTCTGATAGAAACT 59.353 38.462 11.78 9.36 42.24 2.66
3285 3629 7.171678 CCGTCAGTTTTCTTCTGATAGAAACTT 59.828 37.037 11.78 4.53 42.24 2.66
3286 3630 8.006590 CGTCAGTTTTCTTCTGATAGAAACTTG 58.993 37.037 11.78 12.24 42.24 3.16
3287 3631 7.800847 GTCAGTTTTCTTCTGATAGAAACTTGC 59.199 37.037 11.78 5.53 42.24 4.01
3288 3632 6.794158 CAGTTTTCTTCTGATAGAAACTTGCG 59.206 38.462 11.78 0.00 42.24 4.85
3289 3633 6.483640 AGTTTTCTTCTGATAGAAACTTGCGT 59.516 34.615 11.78 0.00 42.24 5.24
3290 3634 6.861065 TTTCTTCTGATAGAAACTTGCGTT 57.139 33.333 9.46 0.00 38.78 4.84
3291 3635 6.861065 TTCTTCTGATAGAAACTTGCGTTT 57.139 33.333 0.00 0.00 45.58 3.60
3292 3636 6.861065 TCTTCTGATAGAAACTTGCGTTTT 57.139 33.333 0.00 0.00 43.09 2.43
3293 3637 7.259290 TCTTCTGATAGAAACTTGCGTTTTT 57.741 32.000 0.00 0.00 43.09 1.94
3294 3638 8.373048 TCTTCTGATAGAAACTTGCGTTTTTA 57.627 30.769 0.00 0.00 43.09 1.52
3295 3639 8.999431 TCTTCTGATAGAAACTTGCGTTTTTAT 58.001 29.630 1.56 1.56 43.09 1.40
3298 3642 9.647797 TCTGATAGAAACTTGCGTTTTTATAGA 57.352 29.630 0.00 0.00 43.09 1.98
3299 3643 9.690434 CTGATAGAAACTTGCGTTTTTATAGAC 57.310 33.333 0.00 0.00 43.09 2.59
3300 3644 9.210329 TGATAGAAACTTGCGTTTTTATAGACA 57.790 29.630 0.00 0.00 43.09 3.41
3354 3698 8.723942 AATACCATTTTGTGATGTACTCTCTC 57.276 34.615 0.00 0.00 0.00 3.20
3355 3699 6.365970 ACCATTTTGTGATGTACTCTCTCT 57.634 37.500 0.00 0.00 0.00 3.10
3356 3700 6.773638 ACCATTTTGTGATGTACTCTCTCTT 58.226 36.000 0.00 0.00 0.00 2.85
3357 3701 7.227156 ACCATTTTGTGATGTACTCTCTCTTT 58.773 34.615 0.00 0.00 0.00 2.52
3358 3702 7.389053 ACCATTTTGTGATGTACTCTCTCTTTC 59.611 37.037 0.00 0.00 0.00 2.62
3359 3703 7.148340 CCATTTTGTGATGTACTCTCTCTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
3360 3704 5.407407 TTGTGATGTACTCTCTCTTTCCC 57.593 43.478 0.00 0.00 0.00 3.97
3361 3705 4.416516 TGTGATGTACTCTCTCTTTCCCA 58.583 43.478 0.00 0.00 0.00 4.37
3362 3706 5.026121 TGTGATGTACTCTCTCTTTCCCAT 58.974 41.667 0.00 0.00 0.00 4.00
3363 3707 6.194967 TGTGATGTACTCTCTCTTTCCCATA 58.805 40.000 0.00 0.00 0.00 2.74
3364 3708 6.667848 TGTGATGTACTCTCTCTTTCCCATAA 59.332 38.462 0.00 0.00 0.00 1.90
3365 3709 7.345653 TGTGATGTACTCTCTCTTTCCCATAAT 59.654 37.037 0.00 0.00 0.00 1.28
3366 3710 7.655328 GTGATGTACTCTCTCTTTCCCATAATG 59.345 40.741 0.00 0.00 0.00 1.90
3367 3711 7.345653 TGATGTACTCTCTCTTTCCCATAATGT 59.654 37.037 0.00 0.00 0.00 2.71
3368 3712 8.783660 ATGTACTCTCTCTTTCCCATAATGTA 57.216 34.615 0.00 0.00 0.00 2.29
3369 3713 8.783660 TGTACTCTCTCTTTCCCATAATGTAT 57.216 34.615 0.00 0.00 0.00 2.29
3370 3714 8.642432 TGTACTCTCTCTTTCCCATAATGTATG 58.358 37.037 0.00 0.00 35.94 2.39
3371 3715 7.682787 ACTCTCTCTTTCCCATAATGTATGT 57.317 36.000 0.00 0.00 34.36 2.29
3372 3716 7.731054 ACTCTCTCTTTCCCATAATGTATGTC 58.269 38.462 0.00 0.00 34.36 3.06
3373 3717 7.345653 ACTCTCTCTTTCCCATAATGTATGTCA 59.654 37.037 0.00 0.00 34.36 3.58
3374 3718 7.500992 TCTCTCTTTCCCATAATGTATGTCAC 58.499 38.462 0.00 0.00 34.36 3.67
3375 3719 7.125659 TCTCTCTTTCCCATAATGTATGTCACA 59.874 37.037 0.00 0.00 42.69 3.58
3376 3720 7.047891 TCTCTTTCCCATAATGTATGTCACAC 58.952 38.462 0.00 0.00 40.86 3.82
3377 3721 6.957631 TCTTTCCCATAATGTATGTCACACT 58.042 36.000 0.00 0.00 40.86 3.55
3378 3722 7.402054 TCTTTCCCATAATGTATGTCACACTT 58.598 34.615 0.00 0.00 40.86 3.16
3379 3723 8.544622 TCTTTCCCATAATGTATGTCACACTTA 58.455 33.333 0.00 0.00 40.86 2.24
3380 3724 8.731275 TTTCCCATAATGTATGTCACACTTAG 57.269 34.615 0.00 0.00 40.86 2.18
3381 3725 6.288294 TCCCATAATGTATGTCACACTTAGC 58.712 40.000 0.00 0.00 40.86 3.09
3382 3726 6.099701 TCCCATAATGTATGTCACACTTAGCT 59.900 38.462 0.00 0.00 40.86 3.32
3383 3727 6.767902 CCCATAATGTATGTCACACTTAGCTT 59.232 38.462 0.00 0.00 40.86 3.74
3384 3728 7.283127 CCCATAATGTATGTCACACTTAGCTTT 59.717 37.037 0.00 0.00 40.86 3.51
3385 3729 8.124823 CCATAATGTATGTCACACTTAGCTTTG 58.875 37.037 0.00 0.00 40.86 2.77
3386 3730 8.668353 CATAATGTATGTCACACTTAGCTTTGT 58.332 33.333 0.00 0.00 40.86 2.83
3387 3731 9.884636 ATAATGTATGTCACACTTAGCTTTGTA 57.115 29.630 0.00 0.00 40.86 2.41
3388 3732 7.596749 ATGTATGTCACACTTAGCTTTGTAC 57.403 36.000 0.00 0.00 40.86 2.90
3389 3733 5.929992 TGTATGTCACACTTAGCTTTGTACC 59.070 40.000 0.00 0.00 30.04 3.34
3390 3734 3.735591 TGTCACACTTAGCTTTGTACCC 58.264 45.455 0.00 0.00 0.00 3.69
3391 3735 3.134985 TGTCACACTTAGCTTTGTACCCA 59.865 43.478 0.00 0.00 0.00 4.51
3392 3736 4.131596 GTCACACTTAGCTTTGTACCCAA 58.868 43.478 0.00 0.00 0.00 4.12
3393 3737 4.760204 GTCACACTTAGCTTTGTACCCAAT 59.240 41.667 0.00 0.00 0.00 3.16
3394 3738 4.759693 TCACACTTAGCTTTGTACCCAATG 59.240 41.667 0.00 0.00 0.00 2.82
3395 3739 4.518970 CACACTTAGCTTTGTACCCAATGT 59.481 41.667 0.00 0.00 0.00 2.71
3396 3740 5.703592 CACACTTAGCTTTGTACCCAATGTA 59.296 40.000 0.00 0.00 0.00 2.29
3405 3749 3.017265 GTACCCAATGTACGATACCGG 57.983 52.381 0.00 0.00 40.44 5.28
3406 3750 1.488390 ACCCAATGTACGATACCGGT 58.512 50.000 13.98 13.98 40.78 5.28
3407 3751 2.665165 ACCCAATGTACGATACCGGTA 58.335 47.619 18.46 18.46 40.78 4.02
3408 3752 3.233507 ACCCAATGTACGATACCGGTAT 58.766 45.455 27.13 27.13 40.78 2.73
3409 3753 3.642848 ACCCAATGTACGATACCGGTATT 59.357 43.478 27.43 15.57 40.78 1.89
3410 3754 3.991773 CCCAATGTACGATACCGGTATTG 59.008 47.826 32.05 32.05 40.78 1.90
3411 3755 4.501915 CCCAATGTACGATACCGGTATTGT 60.502 45.833 37.64 37.64 41.63 2.71
3412 3756 4.682860 CCAATGTACGATACCGGTATTGTC 59.317 45.833 39.08 30.39 39.95 3.18
3413 3757 5.283294 CAATGTACGATACCGGTATTGTCA 58.717 41.667 39.08 33.49 39.95 3.58
3414 3758 5.717078 ATGTACGATACCGGTATTGTCAT 57.283 39.130 39.08 33.92 39.95 3.06
3415 3759 6.822667 ATGTACGATACCGGTATTGTCATA 57.177 37.500 39.08 28.48 39.95 2.15
3416 3760 6.822667 TGTACGATACCGGTATTGTCATAT 57.177 37.500 39.08 23.23 39.95 1.78
3417 3761 7.218228 TGTACGATACCGGTATTGTCATATT 57.782 36.000 39.08 22.64 39.95 1.28
3418 3762 7.660112 TGTACGATACCGGTATTGTCATATTT 58.340 34.615 39.08 22.04 39.95 1.40
3419 3763 7.595875 TGTACGATACCGGTATTGTCATATTTG 59.404 37.037 39.08 18.30 39.95 2.32
3420 3764 5.407387 ACGATACCGGTATTGTCATATTTGC 59.593 40.000 33.24 14.52 35.77 3.68
3421 3765 5.163893 CGATACCGGTATTGTCATATTTGCC 60.164 44.000 27.43 9.43 0.00 4.52
3422 3766 2.875933 ACCGGTATTGTCATATTTGCCG 59.124 45.455 4.49 0.00 37.92 5.69
3423 3767 2.875933 CCGGTATTGTCATATTTGCCGT 59.124 45.455 0.00 0.00 36.63 5.68
3424 3768 3.303725 CCGGTATTGTCATATTTGCCGTG 60.304 47.826 0.00 0.00 36.63 4.94
3425 3769 3.628017 GGTATTGTCATATTTGCCGTGC 58.372 45.455 0.00 0.00 0.00 5.34
3426 3770 3.066064 GGTATTGTCATATTTGCCGTGCA 59.934 43.478 0.00 0.00 36.47 4.57
3440 3784 6.551385 TTGCCGTGCAAAATAATTTGATTT 57.449 29.167 7.46 0.00 45.96 2.17
3441 3785 6.369005 TTGCCGTGCAAAATAATTTGATTTG 58.631 32.000 7.46 6.13 45.96 2.32
3460 3804 9.874205 TTGATTTGCTTATATTTTGGGAAAGAG 57.126 29.630 0.00 0.00 0.00 2.85
3461 3805 8.477256 TGATTTGCTTATATTTTGGGAAAGAGG 58.523 33.333 0.00 0.00 0.00 3.69
3462 3806 6.790232 TTGCTTATATTTTGGGAAAGAGGG 57.210 37.500 0.00 0.00 0.00 4.30
3463 3807 6.086011 TGCTTATATTTTGGGAAAGAGGGA 57.914 37.500 0.00 0.00 0.00 4.20
3464 3808 6.129179 TGCTTATATTTTGGGAAAGAGGGAG 58.871 40.000 0.00 0.00 0.00 4.30
3465 3809 6.129874 GCTTATATTTTGGGAAAGAGGGAGT 58.870 40.000 0.00 0.00 0.00 3.85
3466 3810 7.092174 TGCTTATATTTTGGGAAAGAGGGAGTA 60.092 37.037 0.00 0.00 0.00 2.59
3467 3811 7.445707 GCTTATATTTTGGGAAAGAGGGAGTAG 59.554 40.741 0.00 0.00 0.00 2.57
3468 3812 3.434940 TTTTGGGAAAGAGGGAGTAGC 57.565 47.619 0.00 0.00 0.00 3.58
3469 3813 2.344093 TTGGGAAAGAGGGAGTAGCT 57.656 50.000 0.00 0.00 0.00 3.32
3470 3814 1.573108 TGGGAAAGAGGGAGTAGCTG 58.427 55.000 0.00 0.00 0.00 4.24
3471 3815 0.179234 GGGAAAGAGGGAGTAGCTGC 59.821 60.000 0.00 0.00 0.00 5.25
3472 3816 1.199615 GGAAAGAGGGAGTAGCTGCT 58.800 55.000 3.08 3.08 0.00 4.24
3473 3817 1.134551 GGAAAGAGGGAGTAGCTGCTG 60.135 57.143 9.82 0.00 0.00 4.41
3474 3818 0.908198 AAAGAGGGAGTAGCTGCTGG 59.092 55.000 9.82 0.00 0.00 4.85
3475 3819 0.252467 AAGAGGGAGTAGCTGCTGGT 60.252 55.000 9.82 0.00 0.00 4.00
3476 3820 0.631753 AGAGGGAGTAGCTGCTGGTA 59.368 55.000 9.82 0.00 0.00 3.25
3477 3821 1.007238 AGAGGGAGTAGCTGCTGGTAA 59.993 52.381 9.82 0.00 0.00 2.85
3478 3822 2.043227 GAGGGAGTAGCTGCTGGTAAT 58.957 52.381 9.82 3.11 0.00 1.89
3479 3823 3.117093 AGAGGGAGTAGCTGCTGGTAATA 60.117 47.826 9.82 0.00 0.00 0.98
3480 3824 3.235200 AGGGAGTAGCTGCTGGTAATAG 58.765 50.000 9.82 0.00 0.00 1.73
3481 3825 2.966516 GGGAGTAGCTGCTGGTAATAGT 59.033 50.000 9.82 0.00 0.00 2.12
3482 3826 3.006003 GGGAGTAGCTGCTGGTAATAGTC 59.994 52.174 9.82 3.28 0.00 2.59
3483 3827 3.892588 GGAGTAGCTGCTGGTAATAGTCT 59.107 47.826 9.82 0.00 0.00 3.24
3484 3828 4.342665 GGAGTAGCTGCTGGTAATAGTCTT 59.657 45.833 9.82 0.00 0.00 3.01
3485 3829 5.163395 GGAGTAGCTGCTGGTAATAGTCTTT 60.163 44.000 9.82 0.00 0.00 2.52
3486 3830 6.301169 AGTAGCTGCTGGTAATAGTCTTTT 57.699 37.500 13.43 0.00 0.00 2.27
3487 3831 6.342111 AGTAGCTGCTGGTAATAGTCTTTTC 58.658 40.000 13.43 0.00 0.00 2.29
3488 3832 5.165961 AGCTGCTGGTAATAGTCTTTTCA 57.834 39.130 0.00 0.00 0.00 2.69
3489 3833 5.749462 AGCTGCTGGTAATAGTCTTTTCAT 58.251 37.500 0.00 0.00 0.00 2.57
3490 3834 6.889198 AGCTGCTGGTAATAGTCTTTTCATA 58.111 36.000 0.00 0.00 0.00 2.15
3491 3835 7.512992 AGCTGCTGGTAATAGTCTTTTCATAT 58.487 34.615 0.00 0.00 0.00 1.78
3492 3836 7.443575 AGCTGCTGGTAATAGTCTTTTCATATG 59.556 37.037 0.00 0.00 0.00 1.78
3493 3837 7.442364 GCTGCTGGTAATAGTCTTTTCATATGA 59.558 37.037 0.00 0.00 0.00 2.15
3494 3838 9.499479 CTGCTGGTAATAGTCTTTTCATATGAT 57.501 33.333 6.17 0.00 0.00 2.45
3495 3839 9.494271 TGCTGGTAATAGTCTTTTCATATGATC 57.506 33.333 6.17 0.00 0.00 2.92
3496 3840 9.494271 GCTGGTAATAGTCTTTTCATATGATCA 57.506 33.333 6.17 0.00 0.00 2.92
3506 3850 8.725148 GTCTTTTCATATGATCAGTCAAACTGT 58.275 33.333 6.17 0.00 46.03 3.55
3507 3851 9.942850 TCTTTTCATATGATCAGTCAAACTGTA 57.057 29.630 6.17 0.00 46.03 2.74
3524 3868 5.767816 ACTGTAAAATGTTTGACTCACCC 57.232 39.130 0.00 0.00 0.00 4.61
3525 3869 4.274950 ACTGTAAAATGTTTGACTCACCCG 59.725 41.667 0.00 0.00 0.00 5.28
3526 3870 4.452825 TGTAAAATGTTTGACTCACCCGA 58.547 39.130 0.00 0.00 0.00 5.14
3527 3871 5.067273 TGTAAAATGTTTGACTCACCCGAT 58.933 37.500 0.00 0.00 0.00 4.18
3528 3872 5.533154 TGTAAAATGTTTGACTCACCCGATT 59.467 36.000 0.00 0.00 0.00 3.34
3529 3873 6.711194 TGTAAAATGTTTGACTCACCCGATTA 59.289 34.615 0.00 0.00 0.00 1.75
3530 3874 6.834168 AAAATGTTTGACTCACCCGATTAT 57.166 33.333 0.00 0.00 0.00 1.28
3531 3875 7.931578 AAAATGTTTGACTCACCCGATTATA 57.068 32.000 0.00 0.00 0.00 0.98
3532 3876 6.920569 AATGTTTGACTCACCCGATTATAC 57.079 37.500 0.00 0.00 0.00 1.47
3533 3877 5.670792 TGTTTGACTCACCCGATTATACT 57.329 39.130 0.00 0.00 0.00 2.12
3534 3878 6.778834 TGTTTGACTCACCCGATTATACTA 57.221 37.500 0.00 0.00 0.00 1.82
3535 3879 6.567050 TGTTTGACTCACCCGATTATACTAC 58.433 40.000 0.00 0.00 0.00 2.73
3536 3880 6.379133 TGTTTGACTCACCCGATTATACTACT 59.621 38.462 0.00 0.00 0.00 2.57
3537 3881 7.557358 TGTTTGACTCACCCGATTATACTACTA 59.443 37.037 0.00 0.00 0.00 1.82
3538 3882 8.408601 GTTTGACTCACCCGATTATACTACTAA 58.591 37.037 0.00 0.00 0.00 2.24
3539 3883 8.701908 TTGACTCACCCGATTATACTACTAAT 57.298 34.615 0.00 0.00 0.00 1.73
3540 3884 9.797642 TTGACTCACCCGATTATACTACTAATA 57.202 33.333 0.00 0.00 0.00 0.98
3541 3885 9.970553 TGACTCACCCGATTATACTACTAATAT 57.029 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.615262 GCTCCCATGGCCCTAAAGT 59.385 57.895 6.09 0.00 0.00 2.66
33 34 1.966451 CACCAGCAAAGGTCGGGAC 60.966 63.158 0.00 0.00 40.77 4.46
42 43 3.185203 AGCCCTCCCACCAGCAAA 61.185 61.111 0.00 0.00 0.00 3.68
47 48 4.974438 AACGGAGCCCTCCCACCA 62.974 66.667 8.68 0.00 46.96 4.17
69 70 6.142817 CCCTAACAAAAGTCGAAAAGATGTG 58.857 40.000 0.00 0.00 0.00 3.21
72 73 6.954487 AACCCTAACAAAAGTCGAAAAGAT 57.046 33.333 0.00 0.00 0.00 2.40
74 75 6.252655 CACAAACCCTAACAAAAGTCGAAAAG 59.747 38.462 0.00 0.00 0.00 2.27
100 101 1.573108 TCTCACCTTCCTAAGCAGGG 58.427 55.000 0.00 0.00 42.87 4.45
107 108 1.686325 GCCGCCATCTCACCTTCCTA 61.686 60.000 0.00 0.00 0.00 2.94
133 134 7.285566 CAGGGAGAATCTTATTCCATCTTCAA 58.714 38.462 0.00 0.00 33.73 2.69
149 150 1.772156 GGGGCTAGGCAGGGAGAAT 60.772 63.158 19.14 0.00 0.00 2.40
157 158 4.090588 CGAAACGGGGGCTAGGCA 62.091 66.667 19.14 0.00 0.00 4.75
172 173 1.607148 CGATACTAGATGCACCACCGA 59.393 52.381 0.00 0.00 0.00 4.69
188 189 1.374885 CACACGCCCACCAACGATA 60.375 57.895 0.00 0.00 0.00 2.92
194 195 2.927856 ATCTCCACACGCCCACCA 60.928 61.111 0.00 0.00 0.00 4.17
214 215 1.115467 AAGACAGATCCGCCGAAGAT 58.885 50.000 0.00 0.00 0.00 2.40
218 219 0.824109 ATCAAAGACAGATCCGCCGA 59.176 50.000 0.00 0.00 0.00 5.54
239 240 2.933906 GACGACCAAATCCGAGCAAATA 59.066 45.455 0.00 0.00 0.00 1.40
276 279 7.865820 TCAAAAGGATCCAATCTGAAGATAGT 58.134 34.615 15.82 0.00 33.73 2.12
279 282 7.820578 GATCAAAAGGATCCAATCTGAAGAT 57.179 36.000 15.82 5.95 45.58 2.40
314 320 5.804979 ACACAACAAAACAATAACAGCTGTC 59.195 36.000 21.95 0.00 0.00 3.51
315 321 5.719173 ACACAACAAAACAATAACAGCTGT 58.281 33.333 15.25 15.25 0.00 4.40
317 329 5.580297 CCAACACAACAAAACAATAACAGCT 59.420 36.000 0.00 0.00 0.00 4.24
320 332 5.869888 GGACCAACACAACAAAACAATAACA 59.130 36.000 0.00 0.00 0.00 2.41
324 336 4.817318 AGGACCAACACAACAAAACAAT 57.183 36.364 0.00 0.00 0.00 2.71
330 342 3.750371 CCTCATAGGACCAACACAACAA 58.250 45.455 0.00 0.00 37.67 2.83
333 345 1.004277 GGCCTCATAGGACCAACACAA 59.996 52.381 0.00 0.00 37.46 3.33
349 361 0.905357 AAGTCATCGTGCTAAGGCCT 59.095 50.000 0.00 0.00 37.74 5.19
414 426 0.673333 TACGCCACTGTCATTGCCTG 60.673 55.000 0.00 0.00 0.00 4.85
415 427 0.673644 GTACGCCACTGTCATTGCCT 60.674 55.000 0.00 0.00 0.00 4.75
419 431 1.671850 CGAAGGTACGCCACTGTCATT 60.672 52.381 0.00 0.00 37.19 2.57
448 460 3.119919 CCTAGCGACGACTACAAAGACTT 60.120 47.826 0.00 0.00 0.00 3.01
452 464 2.161012 TCACCTAGCGACGACTACAAAG 59.839 50.000 0.00 0.00 0.00 2.77
519 531 8.700722 ATCTATTCAACTTCGATCATGATAGC 57.299 34.615 8.54 0.00 0.00 2.97
523 535 7.500141 TCCAATCTATTCAACTTCGATCATGA 58.500 34.615 0.00 0.00 0.00 3.07
530 542 8.507249 AGAAAACTTCCAATCTATTCAACTTCG 58.493 33.333 0.00 0.00 0.00 3.79
575 588 9.859427 CCATAGTATCTTTGAATTGAAAAGCAA 57.141 29.630 5.65 0.00 41.53 3.91
576 589 9.023962 ACCATAGTATCTTTGAATTGAAAAGCA 57.976 29.630 5.65 0.00 35.12 3.91
577 590 9.860898 AACCATAGTATCTTTGAATTGAAAAGC 57.139 29.630 5.65 0.00 35.12 3.51
581 594 9.967451 TGGTAACCATAGTATCTTTGAATTGAA 57.033 29.630 0.00 0.00 0.00 2.69
582 595 9.967451 TTGGTAACCATAGTATCTTTGAATTGA 57.033 29.630 0.00 0.00 31.53 2.57
603 616 9.362151 AGAATCTTTGATTAAACAAGGTTGGTA 57.638 29.630 7.33 0.00 0.00 3.25
635 648 1.565305 TCGCATTTGTTTGTTGTGGC 58.435 45.000 0.00 0.00 0.00 5.01
658 671 7.477733 CGTCCGATTTCTTTCTTAGCTTTAAAC 59.522 37.037 0.00 0.00 0.00 2.01
660 673 6.091713 CCGTCCGATTTCTTTCTTAGCTTTAA 59.908 38.462 0.00 0.00 0.00 1.52
661 674 5.579511 CCGTCCGATTTCTTTCTTAGCTTTA 59.420 40.000 0.00 0.00 0.00 1.85
662 675 4.392138 CCGTCCGATTTCTTTCTTAGCTTT 59.608 41.667 0.00 0.00 0.00 3.51
665 678 3.259902 ACCGTCCGATTTCTTTCTTAGC 58.740 45.455 0.00 0.00 0.00 3.09
666 679 5.005490 GCTAACCGTCCGATTTCTTTCTTAG 59.995 44.000 0.00 0.00 0.00 2.18
667 680 4.866486 GCTAACCGTCCGATTTCTTTCTTA 59.134 41.667 0.00 0.00 0.00 2.10
668 681 3.683340 GCTAACCGTCCGATTTCTTTCTT 59.317 43.478 0.00 0.00 0.00 2.52
669 682 3.259902 GCTAACCGTCCGATTTCTTTCT 58.740 45.455 0.00 0.00 0.00 2.52
670 683 2.028883 CGCTAACCGTCCGATTTCTTTC 59.971 50.000 0.00 0.00 0.00 2.62
671 684 1.997606 CGCTAACCGTCCGATTTCTTT 59.002 47.619 0.00 0.00 0.00 2.52
692 705 1.282157 GATCTACCAACAAGGGCCTGT 59.718 52.381 6.92 4.59 43.89 4.00
713 726 2.282958 TCCGGAGCCTTGTCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
875 888 1.269936 GCGCCGCTTACCTAATTAGGA 60.270 52.381 33.60 16.84 46.63 2.94
878 891 1.860676 CAGCGCCGCTTACCTAATTA 58.139 50.000 9.89 0.00 36.40 1.40
892 905 1.813337 GGGAGAAGAGAAGCAGCGC 60.813 63.158 0.00 0.00 0.00 5.92
1128 1143 2.752030 CACTCCTGGATGGACTCCTTA 58.248 52.381 0.00 0.00 45.21 2.69
1234 1249 4.572795 CAGATGAGTGAGCTCGTACTAAGA 59.427 45.833 9.64 0.00 44.48 2.10
1252 1267 2.280389 CGCCCGGGATCACAGATG 60.280 66.667 29.31 0.00 0.00 2.90
1253 1268 4.241555 GCGCCCGGGATCACAGAT 62.242 66.667 29.31 0.00 0.00 2.90
1279 1294 0.445436 CCTTCATGCACTTGTCGCTC 59.555 55.000 0.00 0.00 0.00 5.03
1387 1402 0.395862 CCTCCCGGTAGAGCTTGAGA 60.396 60.000 0.00 0.00 32.17 3.27
1434 1453 0.384725 CGTAGCACAAGCAGCACAAC 60.385 55.000 0.00 0.00 45.49 3.32
1475 1512 0.479378 GTACCCACCCAACCTTCCAA 59.521 55.000 0.00 0.00 0.00 3.53
1476 1513 0.698198 TGTACCCACCCAACCTTCCA 60.698 55.000 0.00 0.00 0.00 3.53
1477 1514 0.037734 CTGTACCCACCCAACCTTCC 59.962 60.000 0.00 0.00 0.00 3.46
1502 1539 7.358770 TGAAGAAATTCAGAATTCCCAACAA 57.641 32.000 8.90 0.00 0.00 2.83
1523 1561 1.894978 GCAAATACAGGGCCCCTTGAA 60.895 52.381 21.43 0.00 0.00 2.69
1524 1562 0.324275 GCAAATACAGGGCCCCTTGA 60.324 55.000 21.43 0.95 0.00 3.02
1533 1571 4.675510 CAGCTAAACATGGCAAATACAGG 58.324 43.478 0.00 0.00 0.00 4.00
1544 1582 4.577693 ACCATATCACTGCAGCTAAACATG 59.422 41.667 15.27 9.78 0.00 3.21
1574 1612 2.104451 CTCTTGCCTGCCTATCATGAGT 59.896 50.000 0.09 0.00 31.41 3.41
1578 1616 1.811778 TCCTCTTGCCTGCCTATCAT 58.188 50.000 0.00 0.00 0.00 2.45
1646 1684 5.070981 CCCATGTGAGTGACATCCTAACTAT 59.929 44.000 0.00 0.00 43.96 2.12
1674 1712 4.194720 ATCGACACGGCGAGGAGC 62.195 66.667 16.62 0.00 44.26 4.70
1675 1713 2.278206 CATCGACACGGCGAGGAG 60.278 66.667 16.62 4.23 43.94 3.69
1677 1715 1.226974 ATTCATCGACACGGCGAGG 60.227 57.895 16.62 7.98 44.26 4.63
1681 1720 1.815421 AGGCATTCATCGACACGGC 60.815 57.895 0.00 0.00 0.00 5.68
1702 1741 0.109342 CCCTGCTGTTGACAACTCCT 59.891 55.000 18.73 0.00 0.00 3.69
1760 1799 2.006888 CCCAAATGATGCGTACTTCGT 58.993 47.619 0.00 0.00 42.13 3.85
1768 1807 2.965572 AATTCCACCCAAATGATGCG 57.034 45.000 0.00 0.00 0.00 4.73
1777 1816 2.725227 AGTAAAGGGGAAATTCCACCCA 59.275 45.455 11.24 0.00 42.28 4.51
1779 1818 8.777578 ATAATAAGTAAAGGGGAAATTCCACC 57.222 34.615 11.24 10.75 42.28 4.61
1853 1893 5.188434 GGACAATCATCATCCTTTCAGTCA 58.812 41.667 0.00 0.00 0.00 3.41
1863 1903 5.678107 GCAAAACTGAGGGACAATCATCATC 60.678 44.000 0.00 0.00 0.00 2.92
1872 1998 1.214175 TGAAGGCAAAACTGAGGGACA 59.786 47.619 0.00 0.00 0.00 4.02
1901 2027 3.824443 TGACATTAACCGTCAGAGACTGA 59.176 43.478 5.63 0.00 38.45 3.41
1902 2028 4.174411 TGACATTAACCGTCAGAGACTG 57.826 45.455 5.63 0.00 38.45 3.51
1908 2034 4.921470 ACGATTTGACATTAACCGTCAG 57.079 40.909 8.97 2.44 43.85 3.51
1962 2095 7.373493 CACATTCCTTTTCAGTTGAATAAGCT 58.627 34.615 0.00 0.00 33.54 3.74
1963 2096 6.089954 GCACATTCCTTTTCAGTTGAATAAGC 59.910 38.462 0.00 0.00 33.54 3.09
1980 2194 0.524862 CAGTTCTGGCTGCACATTCC 59.475 55.000 0.50 0.00 0.00 3.01
2219 2494 1.327764 GATCGCCGAAACATGGAAGAC 59.672 52.381 0.00 0.00 0.00 3.01
2268 2543 7.925483 CCCTAGAAGACAATCAATGAAGAGTAG 59.075 40.741 0.00 0.00 0.00 2.57
2280 2555 3.056749 ACGTGTCACCCTAGAAGACAATC 60.057 47.826 11.67 3.08 43.16 2.67
2421 2696 2.302199 TAGCTGGAGTCAGGCATGCG 62.302 60.000 12.44 0.00 41.19 4.73
2459 2735 5.240891 TGAGCATAAGCATAGCCAGATTAC 58.759 41.667 0.00 0.00 45.49 1.89
2570 2847 8.039603 ACGAATTGTATGTGTATGTTTGTCAT 57.960 30.769 0.00 0.00 40.25 3.06
2588 2865 2.414559 GGATCACACTGCCAACGAATTG 60.415 50.000 0.00 0.00 35.40 2.32
2670 2949 3.916359 TGGTATTTCAAGTATCCCGCA 57.084 42.857 0.00 0.00 0.00 5.69
2673 2952 6.942576 ACATAGCATGGTATTTCAAGTATCCC 59.057 38.462 14.68 0.00 33.60 3.85
2676 2955 9.277783 GAAGACATAGCATGGTATTTCAAGTAT 57.722 33.333 25.19 11.87 33.60 2.12
2690 2969 7.015098 AGCTAACATCTACAGAAGACATAGCAT 59.985 37.037 13.47 2.75 41.24 3.79
2697 2976 6.626302 AGAACAGCTAACATCTACAGAAGAC 58.374 40.000 0.00 0.00 36.93 3.01
2810 3089 8.063153 TCATCTTATTACAGTCACTAACCCCTA 58.937 37.037 0.00 0.00 0.00 3.53
2847 3148 1.268335 GCGAAAGACTGCGGTTTTTCA 60.268 47.619 30.27 0.00 42.82 2.69
2915 3216 5.666969 TGACAAGTTATCGTGGTCAAAAG 57.333 39.130 0.00 0.00 0.00 2.27
2949 3250 7.495934 GCAATATATGACAAGTTACCACAGTCT 59.504 37.037 0.00 0.00 33.56 3.24
2953 3254 6.658849 AGGCAATATATGACAAGTTACCACA 58.341 36.000 0.00 0.00 40.75 4.17
3000 3301 1.785041 CGTGTGGTGCTTTGGTGGAG 61.785 60.000 0.00 0.00 0.00 3.86
3054 3355 2.550830 TCCTTCAGTTTCCTCTGCAC 57.449 50.000 0.00 0.00 35.63 4.57
3133 3472 5.350504 ACCAAGTCTGAATCAGTCATAGG 57.649 43.478 10.36 9.98 35.07 2.57
3134 3473 8.200120 TGAATACCAAGTCTGAATCAGTCATAG 58.800 37.037 10.36 1.04 35.07 2.23
3163 3507 1.968017 CAATGACCTGCGGTGCTGT 60.968 57.895 4.94 0.00 35.25 4.40
3164 3508 2.872557 CAATGACCTGCGGTGCTG 59.127 61.111 4.94 0.00 35.25 4.41
3170 3514 1.093972 TGTAATGGCAATGACCTGCG 58.906 50.000 0.00 0.00 43.60 5.18
3190 3534 2.852449 TGTTGGGAAGTAAATCGTGCA 58.148 42.857 0.00 0.00 0.00 4.57
3191 3535 4.434713 AATGTTGGGAAGTAAATCGTGC 57.565 40.909 0.00 0.00 0.00 5.34
3192 3536 5.629020 CACAAATGTTGGGAAGTAAATCGTG 59.371 40.000 0.00 0.00 35.62 4.35
3193 3537 5.278758 CCACAAATGTTGGGAAGTAAATCGT 60.279 40.000 0.00 0.00 35.62 3.73
3194 3538 5.160641 CCACAAATGTTGGGAAGTAAATCG 58.839 41.667 0.00 0.00 35.62 3.34
3195 3539 6.096673 ACCACAAATGTTGGGAAGTAAATC 57.903 37.500 0.00 0.00 35.62 2.17
3196 3540 6.463755 GGAACCACAAATGTTGGGAAGTAAAT 60.464 38.462 0.00 0.00 35.62 1.40
3197 3541 5.163395 GGAACCACAAATGTTGGGAAGTAAA 60.163 40.000 0.00 0.00 35.62 2.01
3198 3542 4.342665 GGAACCACAAATGTTGGGAAGTAA 59.657 41.667 0.00 0.00 35.62 2.24
3199 3543 3.892588 GGAACCACAAATGTTGGGAAGTA 59.107 43.478 0.00 0.00 35.62 2.24
3200 3544 2.698274 GGAACCACAAATGTTGGGAAGT 59.302 45.455 0.00 0.00 35.62 3.01
3201 3545 2.697751 TGGAACCACAAATGTTGGGAAG 59.302 45.455 0.00 0.00 35.62 3.46
3202 3546 2.697751 CTGGAACCACAAATGTTGGGAA 59.302 45.455 0.00 0.00 35.62 3.97
3203 3547 2.315176 CTGGAACCACAAATGTTGGGA 58.685 47.619 0.00 0.00 35.62 4.37
3204 3548 2.038659 ACTGGAACCACAAATGTTGGG 58.961 47.619 0.00 0.00 34.12 4.12
3205 3549 2.692557 TCACTGGAACCACAAATGTTGG 59.307 45.455 0.00 0.00 34.12 3.77
3206 3550 4.383850 TTCACTGGAACCACAAATGTTG 57.616 40.909 0.00 0.00 0.00 3.33
3207 3551 5.612725 ATTTCACTGGAACCACAAATGTT 57.387 34.783 0.00 0.00 31.35 2.71
3208 3552 5.612725 AATTTCACTGGAACCACAAATGT 57.387 34.783 0.00 0.00 31.35 2.71
3209 3553 6.018832 GTCAAATTTCACTGGAACCACAAATG 60.019 38.462 0.00 0.00 31.35 2.32
3210 3554 6.048509 GTCAAATTTCACTGGAACCACAAAT 58.951 36.000 0.00 0.00 31.35 2.32
3211 3555 5.047021 TGTCAAATTTCACTGGAACCACAAA 60.047 36.000 0.00 0.00 31.35 2.83
3212 3556 4.464244 TGTCAAATTTCACTGGAACCACAA 59.536 37.500 0.00 0.00 31.35 3.33
3213 3557 4.019858 TGTCAAATTTCACTGGAACCACA 58.980 39.130 0.00 0.00 31.35 4.17
3214 3558 4.359706 GTGTCAAATTTCACTGGAACCAC 58.640 43.478 0.00 0.00 31.35 4.16
3215 3559 3.066064 CGTGTCAAATTTCACTGGAACCA 59.934 43.478 8.02 0.00 31.35 3.67
3216 3560 3.066203 ACGTGTCAAATTTCACTGGAACC 59.934 43.478 8.02 0.00 31.35 3.62
3217 3561 4.287238 ACGTGTCAAATTTCACTGGAAC 57.713 40.909 8.02 0.00 31.35 3.62
3218 3562 4.638421 AGAACGTGTCAAATTTCACTGGAA 59.362 37.500 8.02 0.00 33.07 3.53
3219 3563 4.035091 CAGAACGTGTCAAATTTCACTGGA 59.965 41.667 8.02 0.00 33.07 3.86
3220 3564 4.201910 ACAGAACGTGTCAAATTTCACTGG 60.202 41.667 8.02 0.00 31.90 4.00
3221 3565 4.908736 ACAGAACGTGTCAAATTTCACTG 58.091 39.130 8.02 0.00 31.90 3.66
3222 3566 5.123186 TCAACAGAACGTGTCAAATTTCACT 59.877 36.000 8.02 0.00 39.03 3.41
3223 3567 5.328691 TCAACAGAACGTGTCAAATTTCAC 58.671 37.500 0.00 0.94 39.03 3.18
3224 3568 5.553290 TCAACAGAACGTGTCAAATTTCA 57.447 34.783 0.00 0.00 39.03 2.69
3225 3569 7.449934 AAATCAACAGAACGTGTCAAATTTC 57.550 32.000 0.00 0.00 39.03 2.17
3226 3570 7.971168 TGTAAATCAACAGAACGTGTCAAATTT 59.029 29.630 0.00 0.00 39.03 1.82
3227 3571 7.476667 TGTAAATCAACAGAACGTGTCAAATT 58.523 30.769 0.00 0.00 39.03 1.82
3228 3572 7.022055 TGTAAATCAACAGAACGTGTCAAAT 57.978 32.000 0.00 0.00 39.03 2.32
3229 3573 6.424176 TGTAAATCAACAGAACGTGTCAAA 57.576 33.333 0.00 0.00 39.03 2.69
3230 3574 6.612247 ATGTAAATCAACAGAACGTGTCAA 57.388 33.333 0.00 0.00 39.03 3.18
3231 3575 6.612247 AATGTAAATCAACAGAACGTGTCA 57.388 33.333 0.00 0.00 39.03 3.58
3232 3576 7.642194 TCAAAATGTAAATCAACAGAACGTGTC 59.358 33.333 0.00 0.00 39.03 3.67
3233 3577 7.431084 GTCAAAATGTAAATCAACAGAACGTGT 59.569 33.333 0.00 0.00 43.24 4.49
3234 3578 7.096640 GGTCAAAATGTAAATCAACAGAACGTG 60.097 37.037 0.00 0.00 31.70 4.49
3235 3579 6.915843 GGTCAAAATGTAAATCAACAGAACGT 59.084 34.615 0.00 0.00 31.70 3.99
3236 3580 6.086241 CGGTCAAAATGTAAATCAACAGAACG 59.914 38.462 0.00 0.00 31.70 3.95
3237 3581 6.915843 ACGGTCAAAATGTAAATCAACAGAAC 59.084 34.615 0.00 0.00 31.70 3.01
3238 3582 7.033530 ACGGTCAAAATGTAAATCAACAGAA 57.966 32.000 0.00 0.00 31.70 3.02
3239 3583 6.261158 TGACGGTCAAAATGTAAATCAACAGA 59.739 34.615 8.68 0.00 31.70 3.41
3240 3584 6.434596 TGACGGTCAAAATGTAAATCAACAG 58.565 36.000 8.68 0.00 31.70 3.16
3241 3585 6.038825 ACTGACGGTCAAAATGTAAATCAACA 59.961 34.615 12.54 0.00 0.00 3.33
3242 3586 6.435428 ACTGACGGTCAAAATGTAAATCAAC 58.565 36.000 12.54 0.00 0.00 3.18
3243 3587 6.627395 ACTGACGGTCAAAATGTAAATCAA 57.373 33.333 12.54 0.00 0.00 2.57
3244 3588 6.627395 AACTGACGGTCAAAATGTAAATCA 57.373 33.333 12.54 0.00 0.00 2.57
3245 3589 7.860872 AGAAAACTGACGGTCAAAATGTAAATC 59.139 33.333 12.54 6.15 0.00 2.17
3246 3590 7.712797 AGAAAACTGACGGTCAAAATGTAAAT 58.287 30.769 12.54 0.00 0.00 1.40
3247 3591 7.090953 AGAAAACTGACGGTCAAAATGTAAA 57.909 32.000 12.54 0.00 0.00 2.01
3248 3592 6.687081 AGAAAACTGACGGTCAAAATGTAA 57.313 33.333 12.54 0.00 0.00 2.41
3249 3593 6.540914 AGAAGAAAACTGACGGTCAAAATGTA 59.459 34.615 12.54 0.00 0.00 2.29
3250 3594 5.357032 AGAAGAAAACTGACGGTCAAAATGT 59.643 36.000 12.54 3.65 0.00 2.71
3251 3595 5.682862 CAGAAGAAAACTGACGGTCAAAATG 59.317 40.000 12.54 2.99 37.54 2.32
3252 3596 5.588648 TCAGAAGAAAACTGACGGTCAAAAT 59.411 36.000 12.54 0.00 39.10 1.82
3253 3597 4.938832 TCAGAAGAAAACTGACGGTCAAAA 59.061 37.500 12.54 0.00 39.10 2.44
3254 3598 4.509616 TCAGAAGAAAACTGACGGTCAAA 58.490 39.130 12.54 0.00 39.10 2.69
3255 3599 4.131649 TCAGAAGAAAACTGACGGTCAA 57.868 40.909 12.54 0.00 39.10 3.18
3256 3600 3.812156 TCAGAAGAAAACTGACGGTCA 57.188 42.857 10.88 10.88 39.10 4.02
3257 3601 5.710984 TCTATCAGAAGAAAACTGACGGTC 58.289 41.667 0.00 0.00 45.19 4.79
3258 3602 5.723672 TCTATCAGAAGAAAACTGACGGT 57.276 39.130 0.00 0.00 45.19 4.83
3259 3603 6.647067 AGTTTCTATCAGAAGAAAACTGACGG 59.353 38.462 0.00 0.00 44.75 4.79
3260 3604 7.644986 AGTTTCTATCAGAAGAAAACTGACG 57.355 36.000 0.00 0.00 44.75 4.35
3261 3605 7.800847 GCAAGTTTCTATCAGAAGAAAACTGAC 59.199 37.037 0.00 2.67 44.75 3.51
3262 3606 7.307396 CGCAAGTTTCTATCAGAAGAAAACTGA 60.307 37.037 0.00 0.00 44.75 3.41
3263 3607 6.794158 CGCAAGTTTCTATCAGAAGAAAACTG 59.206 38.462 0.89 0.00 44.75 3.16
3264 3608 6.892691 CGCAAGTTTCTATCAGAAGAAAACT 58.107 36.000 0.89 5.81 44.75 2.66
3328 3672 9.817809 GAGAGAGTACATCACAAAATGGTATTA 57.182 33.333 0.00 0.00 0.00 0.98
3329 3673 8.543774 AGAGAGAGTACATCACAAAATGGTATT 58.456 33.333 0.00 0.00 0.00 1.89
3330 3674 8.083828 AGAGAGAGTACATCACAAAATGGTAT 57.916 34.615 0.00 0.00 0.00 2.73
3331 3675 7.482169 AGAGAGAGTACATCACAAAATGGTA 57.518 36.000 0.00 0.00 0.00 3.25
3332 3676 6.365970 AGAGAGAGTACATCACAAAATGGT 57.634 37.500 0.00 0.00 0.00 3.55
3333 3677 7.148340 GGAAAGAGAGAGTACATCACAAAATGG 60.148 40.741 0.00 0.00 0.00 3.16
3334 3678 7.148340 GGGAAAGAGAGAGTACATCACAAAATG 60.148 40.741 0.00 0.00 0.00 2.32
3335 3679 6.881602 GGGAAAGAGAGAGTACATCACAAAAT 59.118 38.462 0.00 0.00 0.00 1.82
3336 3680 6.183361 TGGGAAAGAGAGAGTACATCACAAAA 60.183 38.462 0.00 0.00 0.00 2.44
3337 3681 5.306937 TGGGAAAGAGAGAGTACATCACAAA 59.693 40.000 0.00 0.00 0.00 2.83
3338 3682 4.838423 TGGGAAAGAGAGAGTACATCACAA 59.162 41.667 0.00 0.00 0.00 3.33
3339 3683 4.416516 TGGGAAAGAGAGAGTACATCACA 58.583 43.478 0.00 0.00 0.00 3.58
3340 3684 5.606348 ATGGGAAAGAGAGAGTACATCAC 57.394 43.478 0.00 0.00 0.00 3.06
3341 3685 7.345653 ACATTATGGGAAAGAGAGAGTACATCA 59.654 37.037 0.00 0.00 0.00 3.07
3342 3686 7.731054 ACATTATGGGAAAGAGAGAGTACATC 58.269 38.462 0.00 0.00 0.00 3.06
3343 3687 7.682787 ACATTATGGGAAAGAGAGAGTACAT 57.317 36.000 0.00 0.00 0.00 2.29
3344 3688 8.642432 CATACATTATGGGAAAGAGAGAGTACA 58.358 37.037 0.00 0.00 32.55 2.90
3345 3689 8.643324 ACATACATTATGGGAAAGAGAGAGTAC 58.357 37.037 0.00 0.00 40.47 2.73
3346 3690 8.783660 ACATACATTATGGGAAAGAGAGAGTA 57.216 34.615 0.00 0.00 40.47 2.59
3347 3691 7.345653 TGACATACATTATGGGAAAGAGAGAGT 59.654 37.037 0.00 0.00 40.47 3.24
3348 3692 7.655328 GTGACATACATTATGGGAAAGAGAGAG 59.345 40.741 0.00 0.00 40.47 3.20
3349 3693 7.125659 TGTGACATACATTATGGGAAAGAGAGA 59.874 37.037 0.00 0.00 40.47 3.10
3350 3694 7.225538 GTGTGACATACATTATGGGAAAGAGAG 59.774 40.741 0.00 0.00 42.24 3.20
3351 3695 7.047891 GTGTGACATACATTATGGGAAAGAGA 58.952 38.462 0.00 0.00 42.24 3.10
3352 3696 7.050377 AGTGTGACATACATTATGGGAAAGAG 58.950 38.462 5.06 0.00 42.24 2.85
3353 3697 6.957631 AGTGTGACATACATTATGGGAAAGA 58.042 36.000 5.06 0.00 42.24 2.52
3354 3698 7.630242 AAGTGTGACATACATTATGGGAAAG 57.370 36.000 5.06 0.00 42.24 2.62
3355 3699 7.282224 GCTAAGTGTGACATACATTATGGGAAA 59.718 37.037 5.06 0.00 42.24 3.13
3356 3700 6.765989 GCTAAGTGTGACATACATTATGGGAA 59.234 38.462 5.06 0.00 42.24 3.97
3357 3701 6.099701 AGCTAAGTGTGACATACATTATGGGA 59.900 38.462 5.06 0.00 42.24 4.37
3358 3702 6.291377 AGCTAAGTGTGACATACATTATGGG 58.709 40.000 5.06 0.00 42.24 4.00
3359 3703 7.792374 AAGCTAAGTGTGACATACATTATGG 57.208 36.000 5.06 0.00 42.24 2.74
3360 3704 8.668353 ACAAAGCTAAGTGTGACATACATTATG 58.332 33.333 5.06 0.00 42.24 1.90
3361 3705 8.792830 ACAAAGCTAAGTGTGACATACATTAT 57.207 30.769 5.06 0.00 42.24 1.28
3362 3706 9.146984 GTACAAAGCTAAGTGTGACATACATTA 57.853 33.333 5.06 0.86 42.24 1.90
3363 3707 7.119262 GGTACAAAGCTAAGTGTGACATACATT 59.881 37.037 5.06 0.00 42.24 2.71
3364 3708 6.594159 GGTACAAAGCTAAGTGTGACATACAT 59.406 38.462 5.06 0.00 42.24 2.29
3365 3709 5.929992 GGTACAAAGCTAAGTGTGACATACA 59.070 40.000 5.06 0.00 36.82 2.29
3366 3710 5.350640 GGGTACAAAGCTAAGTGTGACATAC 59.649 44.000 7.65 0.00 0.00 2.39
3367 3711 5.012251 TGGGTACAAAGCTAAGTGTGACATA 59.988 40.000 7.65 0.00 0.00 2.29
3368 3712 4.202419 TGGGTACAAAGCTAAGTGTGACAT 60.202 41.667 7.65 0.00 0.00 3.06
3369 3713 3.134985 TGGGTACAAAGCTAAGTGTGACA 59.865 43.478 7.65 0.00 0.00 3.58
3370 3714 3.735591 TGGGTACAAAGCTAAGTGTGAC 58.264 45.455 7.65 1.73 0.00 3.67
3371 3715 4.425180 TTGGGTACAAAGCTAAGTGTGA 57.575 40.909 7.65 0.00 32.66 3.58
3372 3716 4.518970 ACATTGGGTACAAAGCTAAGTGTG 59.481 41.667 7.65 0.00 40.55 3.82
3373 3717 4.725490 ACATTGGGTACAAAGCTAAGTGT 58.275 39.130 0.00 2.52 40.55 3.55
3386 3730 2.665165 ACCGGTATCGTACATTGGGTA 58.335 47.619 4.49 0.00 33.95 3.69
3387 3731 1.488390 ACCGGTATCGTACATTGGGT 58.512 50.000 4.49 0.00 33.95 4.51
3388 3732 3.947910 ATACCGGTATCGTACATTGGG 57.052 47.619 21.72 0.00 33.95 4.12
3389 3733 4.624015 ACAATACCGGTATCGTACATTGG 58.376 43.478 26.95 3.98 34.32 3.16
3390 3734 5.283294 TGACAATACCGGTATCGTACATTG 58.717 41.667 26.95 21.94 35.23 2.82
3391 3735 5.518848 TGACAATACCGGTATCGTACATT 57.481 39.130 26.95 9.13 33.95 2.71
3392 3736 5.717078 ATGACAATACCGGTATCGTACAT 57.283 39.130 26.95 21.22 33.95 2.29
3393 3737 6.822667 ATATGACAATACCGGTATCGTACA 57.177 37.500 26.95 20.11 33.95 2.90
3394 3738 7.411157 GCAAATATGACAATACCGGTATCGTAC 60.411 40.741 26.95 15.70 33.95 3.67
3395 3739 6.587226 GCAAATATGACAATACCGGTATCGTA 59.413 38.462 26.95 20.04 33.95 3.43
3396 3740 5.407387 GCAAATATGACAATACCGGTATCGT 59.593 40.000 26.95 22.62 33.95 3.73
3397 3741 5.163893 GGCAAATATGACAATACCGGTATCG 60.164 44.000 26.95 19.23 33.41 2.92
3398 3742 5.163893 CGGCAAATATGACAATACCGGTATC 60.164 44.000 26.95 16.35 32.33 2.24
3399 3743 4.693566 CGGCAAATATGACAATACCGGTAT 59.306 41.667 21.72 21.72 32.33 2.73
3400 3744 4.059511 CGGCAAATATGACAATACCGGTA 58.940 43.478 18.46 18.46 32.33 4.02
3401 3745 2.875933 CGGCAAATATGACAATACCGGT 59.124 45.455 13.98 13.98 32.33 5.28
3402 3746 2.875933 ACGGCAAATATGACAATACCGG 59.124 45.455 0.00 0.00 43.51 5.28
3403 3747 3.848191 GCACGGCAAATATGACAATACCG 60.848 47.826 0.00 0.00 44.70 4.02
3404 3748 3.066064 TGCACGGCAAATATGACAATACC 59.934 43.478 0.00 0.00 34.76 2.73
3405 3749 4.285807 TGCACGGCAAATATGACAATAC 57.714 40.909 0.00 0.00 34.76 1.89
3406 3750 4.972514 TTGCACGGCAAATATGACAATA 57.027 36.364 8.58 0.00 45.96 1.90
3407 3751 3.865011 TTGCACGGCAAATATGACAAT 57.135 38.095 8.58 0.00 45.96 2.71
3418 3762 5.924786 CAAATCAAATTATTTTGCACGGCA 58.075 33.333 5.41 0.00 41.66 5.69
3434 3778 9.874205 CTCTTTCCCAAAATATAAGCAAATCAA 57.126 29.630 0.00 0.00 0.00 2.57
3435 3779 8.477256 CCTCTTTCCCAAAATATAAGCAAATCA 58.523 33.333 0.00 0.00 0.00 2.57
3436 3780 7.928167 CCCTCTTTCCCAAAATATAAGCAAATC 59.072 37.037 0.00 0.00 0.00 2.17
3437 3781 7.623278 TCCCTCTTTCCCAAAATATAAGCAAAT 59.377 33.333 0.00 0.00 0.00 2.32
3438 3782 6.957020 TCCCTCTTTCCCAAAATATAAGCAAA 59.043 34.615 0.00 0.00 0.00 3.68
3439 3783 6.498538 TCCCTCTTTCCCAAAATATAAGCAA 58.501 36.000 0.00 0.00 0.00 3.91
3440 3784 6.086011 TCCCTCTTTCCCAAAATATAAGCA 57.914 37.500 0.00 0.00 0.00 3.91
3441 3785 6.129874 ACTCCCTCTTTCCCAAAATATAAGC 58.870 40.000 0.00 0.00 0.00 3.09
3442 3786 7.445707 GCTACTCCCTCTTTCCCAAAATATAAG 59.554 40.741 0.00 0.00 0.00 1.73
3443 3787 7.128883 AGCTACTCCCTCTTTCCCAAAATATAA 59.871 37.037 0.00 0.00 0.00 0.98
3444 3788 6.619852 AGCTACTCCCTCTTTCCCAAAATATA 59.380 38.462 0.00 0.00 0.00 0.86
3445 3789 5.433381 AGCTACTCCCTCTTTCCCAAAATAT 59.567 40.000 0.00 0.00 0.00 1.28
3446 3790 4.788617 AGCTACTCCCTCTTTCCCAAAATA 59.211 41.667 0.00 0.00 0.00 1.40
3447 3791 3.593780 AGCTACTCCCTCTTTCCCAAAAT 59.406 43.478 0.00 0.00 0.00 1.82
3448 3792 2.986728 AGCTACTCCCTCTTTCCCAAAA 59.013 45.455 0.00 0.00 0.00 2.44
3449 3793 2.305927 CAGCTACTCCCTCTTTCCCAAA 59.694 50.000 0.00 0.00 0.00 3.28
3450 3794 1.909302 CAGCTACTCCCTCTTTCCCAA 59.091 52.381 0.00 0.00 0.00 4.12
3451 3795 1.573108 CAGCTACTCCCTCTTTCCCA 58.427 55.000 0.00 0.00 0.00 4.37
3452 3796 0.179234 GCAGCTACTCCCTCTTTCCC 59.821 60.000 0.00 0.00 0.00 3.97
3453 3797 1.134551 CAGCAGCTACTCCCTCTTTCC 60.135 57.143 0.00 0.00 0.00 3.13
3454 3798 1.134551 CCAGCAGCTACTCCCTCTTTC 60.135 57.143 0.00 0.00 0.00 2.62
3455 3799 0.908198 CCAGCAGCTACTCCCTCTTT 59.092 55.000 0.00 0.00 0.00 2.52
3456 3800 0.252467 ACCAGCAGCTACTCCCTCTT 60.252 55.000 0.00 0.00 0.00 2.85
3457 3801 0.631753 TACCAGCAGCTACTCCCTCT 59.368 55.000 0.00 0.00 0.00 3.69
3458 3802 1.486211 TTACCAGCAGCTACTCCCTC 58.514 55.000 0.00 0.00 0.00 4.30
3459 3803 2.182516 ATTACCAGCAGCTACTCCCT 57.817 50.000 0.00 0.00 0.00 4.20
3460 3804 2.966516 ACTATTACCAGCAGCTACTCCC 59.033 50.000 0.00 0.00 0.00 4.30
3461 3805 3.892588 AGACTATTACCAGCAGCTACTCC 59.107 47.826 0.00 0.00 0.00 3.85
3462 3806 5.523438 AAGACTATTACCAGCAGCTACTC 57.477 43.478 0.00 0.00 0.00 2.59
3463 3807 5.941555 AAAGACTATTACCAGCAGCTACT 57.058 39.130 0.00 0.00 0.00 2.57
3464 3808 6.106673 TGAAAAGACTATTACCAGCAGCTAC 58.893 40.000 0.00 0.00 0.00 3.58
3465 3809 6.294361 TGAAAAGACTATTACCAGCAGCTA 57.706 37.500 0.00 0.00 0.00 3.32
3466 3810 5.165961 TGAAAAGACTATTACCAGCAGCT 57.834 39.130 0.00 0.00 0.00 4.24
3467 3811 7.442364 TCATATGAAAAGACTATTACCAGCAGC 59.558 37.037 1.98 0.00 0.00 5.25
3468 3812 8.893219 TCATATGAAAAGACTATTACCAGCAG 57.107 34.615 1.98 0.00 0.00 4.24
3469 3813 9.494271 GATCATATGAAAAGACTATTACCAGCA 57.506 33.333 9.99 0.00 0.00 4.41
3470 3814 9.494271 TGATCATATGAAAAGACTATTACCAGC 57.506 33.333 9.99 0.00 0.00 4.85
3500 3844 6.569780 GGGTGAGTCAAACATTTTACAGTTT 58.430 36.000 0.00 0.00 38.40 2.66
3501 3845 5.220970 CGGGTGAGTCAAACATTTTACAGTT 60.221 40.000 0.00 0.00 0.00 3.16
3502 3846 4.274950 CGGGTGAGTCAAACATTTTACAGT 59.725 41.667 0.00 0.00 0.00 3.55
3503 3847 4.513692 TCGGGTGAGTCAAACATTTTACAG 59.486 41.667 0.00 0.00 0.00 2.74
3504 3848 4.452825 TCGGGTGAGTCAAACATTTTACA 58.547 39.130 0.00 0.00 0.00 2.41
3505 3849 5.622770 ATCGGGTGAGTCAAACATTTTAC 57.377 39.130 0.00 0.00 0.00 2.01
3506 3850 7.931578 ATAATCGGGTGAGTCAAACATTTTA 57.068 32.000 0.00 0.00 0.00 1.52
3507 3851 6.834168 ATAATCGGGTGAGTCAAACATTTT 57.166 33.333 0.00 0.00 0.00 1.82
3508 3852 7.110155 AGTATAATCGGGTGAGTCAAACATTT 58.890 34.615 0.00 0.00 0.00 2.32
3509 3853 6.650120 AGTATAATCGGGTGAGTCAAACATT 58.350 36.000 0.00 0.00 0.00 2.71
3510 3854 6.235231 AGTATAATCGGGTGAGTCAAACAT 57.765 37.500 0.00 0.00 0.00 2.71
3511 3855 5.670792 AGTATAATCGGGTGAGTCAAACA 57.329 39.130 0.00 0.00 0.00 2.83
3512 3856 6.803642 AGTAGTATAATCGGGTGAGTCAAAC 58.196 40.000 0.00 0.00 0.00 2.93
3513 3857 8.523915 TTAGTAGTATAATCGGGTGAGTCAAA 57.476 34.615 0.00 0.00 0.00 2.69
3514 3858 8.701908 ATTAGTAGTATAATCGGGTGAGTCAA 57.298 34.615 0.00 0.00 0.00 3.18
3515 3859 9.970553 ATATTAGTAGTATAATCGGGTGAGTCA 57.029 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.