Multiple sequence alignment - TraesCS1A01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G411400 chr1A 100.000 3803 0 0 1 3803 572019883 572016081 0.000000e+00 7023.0
1 TraesCS1A01G411400 chr1A 89.109 101 9 2 3051 3150 572016734 572016833 1.430000e-24 124.0
2 TraesCS1A01G411400 chr1B 93.737 3720 133 48 24 3727 662555766 662552131 0.000000e+00 5487.0
3 TraesCS1A01G411400 chr1B 96.552 58 1 1 3744 3801 662552059 662552003 1.120000e-15 95.3
4 TraesCS1A01G411400 chr1D 96.538 3062 74 14 581 3636 476255993 476252958 0.000000e+00 5038.0
5 TraesCS1A01G411400 chr1D 85.243 515 45 18 24 536 476256497 476256012 5.670000e-138 501.0
6 TraesCS1A01G411400 chr1D 93.496 123 8 0 3681 3803 476252955 476252833 2.330000e-42 183.0
7 TraesCS1A01G411400 chr2B 91.616 2135 178 1 749 2882 143272708 143274842 0.000000e+00 2950.0
8 TraesCS1A01G411400 chr2D 91.314 2153 181 4 749 2901 90500453 90502599 0.000000e+00 2935.0
9 TraesCS1A01G411400 chr2A 90.711 2153 199 1 749 2901 90416103 90418254 0.000000e+00 2867.0
10 TraesCS1A01G411400 chr2A 90.196 102 6 4 3054 3153 680522053 680521954 3.080000e-26 130.0
11 TraesCS1A01G411400 chr2A 90.000 100 5 5 3051 3147 680521957 680522054 1.430000e-24 124.0
12 TraesCS1A01G411400 chr6B 92.453 106 6 1 3052 3155 553059083 553058978 2.370000e-32 150.0
13 TraesCS1A01G411400 chr7B 93.684 95 3 2 3054 3148 329083650 329083559 5.120000e-29 139.0
14 TraesCS1A01G411400 chr5D 92.000 100 4 2 3052 3147 491004600 491004699 1.840000e-28 137.0
15 TraesCS1A01G411400 chr3A 91.346 104 4 3 3057 3157 80090953 80090852 1.840000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G411400 chr1A 572016081 572019883 3802 True 7023.000000 7023 100.0000 1 3803 1 chr1A.!!$R1 3802
1 TraesCS1A01G411400 chr1B 662552003 662555766 3763 True 2791.150000 5487 95.1445 24 3801 2 chr1B.!!$R1 3777
2 TraesCS1A01G411400 chr1D 476252833 476256497 3664 True 1907.333333 5038 91.7590 24 3803 3 chr1D.!!$R1 3779
3 TraesCS1A01G411400 chr2B 143272708 143274842 2134 False 2950.000000 2950 91.6160 749 2882 1 chr2B.!!$F1 2133
4 TraesCS1A01G411400 chr2D 90500453 90502599 2146 False 2935.000000 2935 91.3140 749 2901 1 chr2D.!!$F1 2152
5 TraesCS1A01G411400 chr2A 90416103 90418254 2151 False 2867.000000 2867 90.7110 749 2901 1 chr2A.!!$F1 2152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 388 0.107897 CGGTAGCTGGTGCATGGTTA 60.108 55.0 0.0 0.0 42.74 2.85 F
388 395 0.327924 TGGTGCATGGTTAGTGAGGG 59.672 55.0 0.0 0.0 0.00 4.30 F
391 398 0.327924 TGCATGGTTAGTGAGGGTGG 59.672 55.0 0.0 0.0 0.00 4.61 F
1773 1790 0.595095 CCTCTGCTGTGAAAACTGGC 59.405 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1483 0.175302 CACATTCAGCTCGAGCCTCT 59.825 55.000 32.94 13.17 43.38 3.69 R
1773 1790 0.679002 CAGACAGAGCACCCCAATGG 60.679 60.000 0.00 0.00 41.37 3.16 R
2412 2429 2.234908 CTGGACCTCACTTCCTACTTGG 59.765 54.545 0.00 0.00 33.84 3.61 R
3730 3761 0.391263 GGGAACGTAGGCTTGAGTGG 60.391 60.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 8.312669 AGATGGTTAATAGACTATATGCCTCC 57.687 38.462 0.00 0.00 0.00 4.30
285 286 7.093992 TGGACAAACTGTTCCTTTTTGTTAAG 58.906 34.615 0.00 0.00 42.19 1.85
287 288 6.403049 ACAAACTGTTCCTTTTTGTTAAGGG 58.597 36.000 0.00 0.00 44.01 3.95
295 296 5.805728 TCCTTTTTGTTAAGGGCAAAACAA 58.194 33.333 7.05 7.05 42.99 2.83
340 341 4.576463 CCCAGACTGCATCAATACTTTACC 59.424 45.833 0.00 0.00 0.00 2.85
342 343 4.870426 CAGACTGCATCAATACTTTACCGT 59.130 41.667 0.00 0.00 0.00 4.83
351 352 3.620427 ATACTTTACCGTGATGCACCA 57.380 42.857 0.00 0.00 0.00 4.17
366 373 1.305802 ACCAGAGATGGTGGCGGTA 60.306 57.895 0.00 0.00 41.33 4.02
367 374 1.330655 ACCAGAGATGGTGGCGGTAG 61.331 60.000 0.00 0.00 41.33 3.18
368 375 1.227380 CAGAGATGGTGGCGGTAGC 60.227 63.158 0.00 0.00 44.18 3.58
371 378 2.203070 GATGGTGGCGGTAGCTGG 60.203 66.667 0.00 0.00 44.37 4.85
372 379 3.009115 ATGGTGGCGGTAGCTGGT 61.009 61.111 0.00 0.00 44.37 4.00
375 382 4.697756 GTGGCGGTAGCTGGTGCA 62.698 66.667 0.00 0.00 44.37 4.57
376 383 3.716195 TGGCGGTAGCTGGTGCAT 61.716 61.111 0.00 0.00 44.37 3.96
377 384 3.204827 GGCGGTAGCTGGTGCATG 61.205 66.667 0.00 0.00 44.37 4.06
378 385 3.204827 GCGGTAGCTGGTGCATGG 61.205 66.667 0.00 0.00 42.74 3.66
379 386 2.268920 CGGTAGCTGGTGCATGGT 59.731 61.111 0.00 0.00 42.74 3.55
380 387 1.377202 CGGTAGCTGGTGCATGGTT 60.377 57.895 0.00 0.00 42.74 3.67
381 388 0.107897 CGGTAGCTGGTGCATGGTTA 60.108 55.000 0.00 0.00 42.74 2.85
382 389 1.668419 GGTAGCTGGTGCATGGTTAG 58.332 55.000 0.00 0.00 42.74 2.34
383 390 1.065418 GGTAGCTGGTGCATGGTTAGT 60.065 52.381 0.00 0.00 42.74 2.24
384 391 2.009774 GTAGCTGGTGCATGGTTAGTG 58.990 52.381 0.00 0.00 42.74 2.74
385 392 0.692476 AGCTGGTGCATGGTTAGTGA 59.308 50.000 0.00 0.00 42.74 3.41
386 393 1.089920 GCTGGTGCATGGTTAGTGAG 58.910 55.000 0.00 0.00 39.41 3.51
387 394 1.742761 CTGGTGCATGGTTAGTGAGG 58.257 55.000 0.00 0.00 0.00 3.86
388 395 0.327924 TGGTGCATGGTTAGTGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
389 396 0.328258 GGTGCATGGTTAGTGAGGGT 59.672 55.000 0.00 0.00 0.00 4.34
390 397 1.453155 GTGCATGGTTAGTGAGGGTG 58.547 55.000 0.00 0.00 0.00 4.61
391 398 0.327924 TGCATGGTTAGTGAGGGTGG 59.672 55.000 0.00 0.00 0.00 4.61
392 399 0.618458 GCATGGTTAGTGAGGGTGGA 59.382 55.000 0.00 0.00 0.00 4.02
437 444 1.136500 GCGGTAGCCCATATAGCCTAC 59.864 57.143 0.00 0.00 37.42 3.18
438 445 2.736347 CGGTAGCCCATATAGCCTACT 58.264 52.381 0.00 0.00 0.00 2.57
441 448 3.447944 GGTAGCCCATATAGCCTACTGTC 59.552 52.174 0.00 0.00 0.00 3.51
447 454 2.549064 TATAGCCTACTGTCGCCGTA 57.451 50.000 0.00 0.00 0.00 4.02
463 470 1.242076 CGTATACCGGTCCGAGGATT 58.758 55.000 12.40 0.00 0.00 3.01
464 471 1.068748 CGTATACCGGTCCGAGGATTG 60.069 57.143 12.40 0.00 0.00 2.67
492 499 6.825610 TGTGCAAAACTTTCAAATAGGGATT 58.174 32.000 0.00 0.00 0.00 3.01
509 516 3.306019 GGGATTCAATCGTGCCAAACTTT 60.306 43.478 0.00 0.00 0.00 2.66
528 535 9.592720 CAAACTTTGTTCAAAAGGTTAAAACAG 57.407 29.630 1.07 0.00 35.17 3.16
574 586 5.968676 AAAAAGGCTTTTTAGGGAAGGTT 57.031 34.783 30.82 8.10 40.80 3.50
576 588 7.440505 AAAAAGGCTTTTTAGGGAAGGTTAA 57.559 32.000 30.82 0.00 40.80 2.01
578 590 6.415206 AAGGCTTTTTAGGGAAGGTTAAAC 57.585 37.500 0.00 0.00 0.00 2.01
579 591 5.460416 AGGCTTTTTAGGGAAGGTTAAACA 58.540 37.500 0.00 0.00 0.00 2.83
580 592 5.538813 AGGCTTTTTAGGGAAGGTTAAACAG 59.461 40.000 0.00 0.00 0.00 3.16
581 593 5.303589 GGCTTTTTAGGGAAGGTTAAACAGT 59.696 40.000 0.00 0.00 0.00 3.55
582 594 6.183360 GGCTTTTTAGGGAAGGTTAAACAGTT 60.183 38.462 0.00 0.00 0.00 3.16
583 595 7.270047 GCTTTTTAGGGAAGGTTAAACAGTTT 58.730 34.615 3.49 3.49 0.00 2.66
584 596 7.767198 GCTTTTTAGGGAAGGTTAAACAGTTTT 59.233 33.333 3.25 0.00 0.00 2.43
585 597 9.661563 CTTTTTAGGGAAGGTTAAACAGTTTTT 57.338 29.630 3.25 0.00 0.00 1.94
628 640 3.947834 CAGTTATTTCGGCCTCTTTGGAT 59.052 43.478 0.00 0.00 38.35 3.41
684 696 1.762063 GCCCCCAAATGGTCCATCC 60.762 63.158 4.39 0.00 0.00 3.51
903 919 1.667830 CGTCGTCCTGCACAACCAT 60.668 57.895 0.00 0.00 0.00 3.55
1071 1087 4.736896 GCGGCCGACTTCGACCTT 62.737 66.667 33.48 0.00 39.85 3.50
1239 1256 1.153309 CGCTCATGTGGAGGATGCA 60.153 57.895 0.00 0.00 44.22 3.96
1466 1483 1.074775 ATGCCCAGGCGTTGAAGAA 59.925 52.632 3.83 0.00 45.51 2.52
1729 1746 3.730761 GTGCTGGTCTTGCAGCCG 61.731 66.667 0.00 0.00 43.29 5.52
1773 1790 0.595095 CCTCTGCTGTGAAAACTGGC 59.405 55.000 0.00 0.00 0.00 4.85
2412 2429 2.237392 AGAGCCTGGTGTTAGTTGGATC 59.763 50.000 0.00 0.00 33.86 3.36
2825 2842 2.643551 CACACCTTGGTTGTCAGAAGT 58.356 47.619 0.00 0.00 0.00 3.01
2832 2849 3.924114 TGGTTGTCAGAAGTTCCAGAA 57.076 42.857 0.00 0.00 0.00 3.02
2868 2885 4.842531 TGGACATCAACATGGTATGTCT 57.157 40.909 24.42 3.45 45.65 3.41
3274 3295 5.476599 AGATGTGTCTGGCTAGATGTCTATC 59.523 44.000 2.00 4.21 34.94 2.08
3288 3309 9.624697 CTAGATGTCTATCTCTACAGAATTTGC 57.375 37.037 0.00 0.00 42.60 3.68
3312 3333 5.182570 CAGAGCTGTTCATTTTGATCTGGAA 59.817 40.000 0.00 0.00 29.49 3.53
3462 3485 2.104792 TCCAGGTGAGTTCTGTTTCCTG 59.895 50.000 0.00 0.00 41.17 3.86
3523 3547 3.677601 CACAAGAATATGTGCTCAAGCG 58.322 45.455 0.00 0.00 43.67 4.68
3529 3553 2.734276 TATGTGCTCAAGCGTACACA 57.266 45.000 5.14 5.14 46.16 3.72
3530 3554 1.432514 ATGTGCTCAAGCGTACACAG 58.567 50.000 7.98 0.00 45.39 3.66
3531 3555 0.104120 TGTGCTCAAGCGTACACAGT 59.896 50.000 0.00 0.00 45.83 3.55
3601 3625 3.823304 CCCTTTTCTCTCTGGAGGTTTTG 59.177 47.826 0.00 0.00 39.86 2.44
3630 3657 1.724545 TGGTTTTCCTCTTCCTCCGA 58.275 50.000 0.00 0.00 41.38 4.55
3678 3705 2.546795 CGTCTTGAGCAGAGTTCTTGGT 60.547 50.000 0.00 0.00 29.34 3.67
3730 3761 3.951769 ATCCCCTTGCTGCTGGTGC 62.952 63.158 0.00 0.00 40.20 5.01
3732 3763 4.980702 CCCTTGCTGCTGGTGCCA 62.981 66.667 0.00 0.00 38.71 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 7.715265 ATTTATGCACTAACATTCGGAGTAG 57.285 36.000 0.00 0.00 0.00 2.57
104 105 9.729023 CATTTTATTTATGCACTAACATTCGGA 57.271 29.630 0.00 0.00 0.00 4.55
105 106 9.729023 TCATTTTATTTATGCACTAACATTCGG 57.271 29.630 0.00 0.00 0.00 4.30
156 157 4.689612 ACATGTATGGTGCCTAGGTTAG 57.310 45.455 11.31 0.00 0.00 2.34
257 258 6.203915 AACAAAAAGGAACAGTTTGTCCAAAC 59.796 34.615 13.66 13.66 43.44 2.93
313 314 2.592102 ATTGATGCAGTCTGGGTGTT 57.408 45.000 1.14 0.00 0.00 3.32
340 341 2.686602 CCATCTCTGGTGCATCACG 58.313 57.895 0.00 0.00 37.79 4.35
351 352 1.381872 AGCTACCGCCACCATCTCT 60.382 57.895 0.00 0.00 36.60 3.10
366 373 0.692476 TCACTAACCATGCACCAGCT 59.308 50.000 0.00 0.00 42.74 4.24
367 374 1.089920 CTCACTAACCATGCACCAGC 58.910 55.000 0.00 0.00 42.57 4.85
368 375 1.679944 CCCTCACTAACCATGCACCAG 60.680 57.143 0.00 0.00 0.00 4.00
371 378 1.453155 CACCCTCACTAACCATGCAC 58.547 55.000 0.00 0.00 0.00 4.57
372 379 0.327924 CCACCCTCACTAACCATGCA 59.672 55.000 0.00 0.00 0.00 3.96
374 381 1.065418 GGTCCACCCTCACTAACCATG 60.065 57.143 0.00 0.00 0.00 3.66
375 382 1.203440 AGGTCCACCCTCACTAACCAT 60.203 52.381 0.00 0.00 40.71 3.55
376 383 0.192566 AGGTCCACCCTCACTAACCA 59.807 55.000 0.00 0.00 40.71 3.67
377 384 2.242882 TAGGTCCACCCTCACTAACC 57.757 55.000 0.00 0.00 44.81 2.85
378 385 2.158943 GCATAGGTCCACCCTCACTAAC 60.159 54.545 0.00 0.00 44.81 2.34
379 386 2.116238 GCATAGGTCCACCCTCACTAA 58.884 52.381 0.00 0.00 44.81 2.24
380 387 1.291033 AGCATAGGTCCACCCTCACTA 59.709 52.381 0.00 0.00 44.81 2.74
381 388 0.043334 AGCATAGGTCCACCCTCACT 59.957 55.000 0.00 0.00 44.81 3.41
382 389 1.413077 GTAGCATAGGTCCACCCTCAC 59.587 57.143 0.00 0.00 44.81 3.51
383 390 1.691482 GGTAGCATAGGTCCACCCTCA 60.691 57.143 0.00 0.00 44.81 3.86
384 391 1.049402 GGTAGCATAGGTCCACCCTC 58.951 60.000 0.00 0.00 44.81 4.30
386 393 1.746517 CGGTAGCATAGGTCCACCC 59.253 63.158 0.00 0.00 36.42 4.61
387 394 1.069258 GCGGTAGCATAGGTCCACC 59.931 63.158 0.00 0.00 44.35 4.61
388 395 4.752514 GCGGTAGCATAGGTCCAC 57.247 61.111 0.00 0.00 44.35 4.02
447 454 0.105862 TCCAATCCTCGGACCGGTAT 60.106 55.000 15.25 2.31 0.00 2.73
463 470 6.705381 CCTATTTGAAAGTTTTGCACAATCCA 59.295 34.615 0.00 0.00 0.00 3.41
464 471 6.147656 CCCTATTTGAAAGTTTTGCACAATCC 59.852 38.462 0.00 0.00 0.00 3.01
492 499 3.129462 TGAACAAAGTTTGGCACGATTGA 59.871 39.130 19.45 0.00 33.59 2.57
555 567 5.900699 TGTTTAACCTTCCCTAAAAAGCCTT 59.099 36.000 0.00 0.00 0.00 4.35
558 570 6.401047 ACTGTTTAACCTTCCCTAAAAAGC 57.599 37.500 0.00 0.00 28.98 3.51
559 571 9.661563 AAAAACTGTTTAACCTTCCCTAAAAAG 57.338 29.630 6.16 0.00 31.32 2.27
583 595 8.949177 ACTGTTTAACCTTCTCGTTTCTAAAAA 58.051 29.630 0.00 0.00 0.00 1.94
584 596 8.496707 ACTGTTTAACCTTCTCGTTTCTAAAA 57.503 30.769 0.00 0.00 0.00 1.52
585 597 8.496707 AACTGTTTAACCTTCTCGTTTCTAAA 57.503 30.769 0.00 0.00 0.00 1.85
586 598 9.768662 ATAACTGTTTAACCTTCTCGTTTCTAA 57.231 29.630 0.00 0.00 0.00 2.10
587 599 9.768662 AATAACTGTTTAACCTTCTCGTTTCTA 57.231 29.630 0.00 0.00 0.00 2.10
588 600 8.672823 AATAACTGTTTAACCTTCTCGTTTCT 57.327 30.769 0.00 0.00 0.00 2.52
589 601 9.378597 GAAATAACTGTTTAACCTTCTCGTTTC 57.621 33.333 0.00 0.00 0.00 2.78
590 602 8.066000 CGAAATAACTGTTTAACCTTCTCGTTT 58.934 33.333 0.00 0.00 0.00 3.60
591 603 7.307573 CCGAAATAACTGTTTAACCTTCTCGTT 60.308 37.037 0.00 0.00 0.00 3.85
592 604 6.146673 CCGAAATAACTGTTTAACCTTCTCGT 59.853 38.462 0.00 0.00 0.00 4.18
593 605 6.531439 CCGAAATAACTGTTTAACCTTCTCG 58.469 40.000 0.00 0.00 0.00 4.04
594 606 6.312487 GCCGAAATAACTGTTTAACCTTCTC 58.688 40.000 0.00 0.00 0.00 2.87
595 607 5.182570 GGCCGAAATAACTGTTTAACCTTCT 59.817 40.000 0.00 0.00 0.00 2.85
596 608 5.182570 AGGCCGAAATAACTGTTTAACCTTC 59.817 40.000 0.00 0.00 0.00 3.46
597 609 5.074804 AGGCCGAAATAACTGTTTAACCTT 58.925 37.500 0.00 0.00 0.00 3.50
598 610 4.659115 AGGCCGAAATAACTGTTTAACCT 58.341 39.130 0.00 0.00 0.00 3.50
599 611 4.698780 AGAGGCCGAAATAACTGTTTAACC 59.301 41.667 0.00 0.00 0.00 2.85
600 612 5.874895 AGAGGCCGAAATAACTGTTTAAC 57.125 39.130 0.00 0.00 0.00 2.01
601 613 6.294286 CCAAAGAGGCCGAAATAACTGTTTAA 60.294 38.462 0.00 0.00 0.00 1.52
602 614 5.182380 CCAAAGAGGCCGAAATAACTGTTTA 59.818 40.000 0.00 0.00 0.00 2.01
628 640 4.697756 GCAGGTGCAGCCCGTACA 62.698 66.667 13.29 0.00 41.59 2.90
684 696 4.326504 AATGCCCAGTTTTCTTTCACTG 57.673 40.909 0.00 0.00 40.23 3.66
903 919 1.035385 TGGCGTAGAAGGCGATGAGA 61.035 55.000 0.00 0.00 39.82 3.27
951 967 2.325082 GGGCATTGCGTCGAACACT 61.325 57.895 1.91 0.00 0.00 3.55
1239 1256 3.055094 ACACACTCTCAAACACCTTGACT 60.055 43.478 0.00 0.00 39.20 3.41
1437 1454 2.672651 TGGGCATGCACTTGACGG 60.673 61.111 22.81 0.00 0.00 4.79
1466 1483 0.175302 CACATTCAGCTCGAGCCTCT 59.825 55.000 32.94 13.17 43.38 3.69
1729 1746 4.990426 ACTAAGTGCATTGCCATTTTTCAC 59.010 37.500 6.12 0.00 0.00 3.18
1773 1790 0.679002 CAGACAGAGCACCCCAATGG 60.679 60.000 0.00 0.00 41.37 3.16
2412 2429 2.234908 CTGGACCTCACTTCCTACTTGG 59.765 54.545 0.00 0.00 33.84 3.61
2832 2849 7.392953 TGTTGATGTCCATAACAACACATATGT 59.607 33.333 1.41 1.41 44.50 2.29
2868 2885 8.822805 TCTAACCTTGGCTCTAGAAAATAAGAA 58.177 33.333 0.00 0.00 0.00 2.52
3288 3309 4.698780 TCCAGATCAAAATGAACAGCTCTG 59.301 41.667 0.00 0.00 31.66 3.35
3335 3357 9.271828 CTATTGGCAAGTTAAGGAAAAACATTT 57.728 29.630 5.96 0.00 0.00 2.32
3462 3485 2.558313 GCGACAACTTCTGCCAGC 59.442 61.111 0.00 0.00 0.00 4.85
3508 3532 3.595173 TGTGTACGCTTGAGCACATATT 58.405 40.909 8.10 0.00 42.21 1.28
3513 3537 1.986378 CTACTGTGTACGCTTGAGCAC 59.014 52.381 8.10 0.00 42.21 4.40
3529 3553 3.703001 AGCAATAACCTGTGCACTACT 57.297 42.857 19.41 2.52 43.42 2.57
3530 3554 4.003648 AGAAGCAATAACCTGTGCACTAC 58.996 43.478 19.41 0.00 43.42 2.73
3531 3555 4.002982 CAGAAGCAATAACCTGTGCACTA 58.997 43.478 19.41 1.77 43.42 2.74
3565 3589 3.132824 AGAAAAGGGCTTGTTTCTGTTGG 59.867 43.478 8.94 0.00 41.42 3.77
3578 3602 0.988063 ACCTCCAGAGAGAAAAGGGC 59.012 55.000 0.00 0.00 43.39 5.19
3601 3625 3.084786 AGAGGAAAACCATGCTTGCTAC 58.915 45.455 0.00 0.00 0.00 3.58
3630 3657 4.876107 AGTTGAAGAACATCACAACTCGTT 59.124 37.500 0.00 0.00 46.12 3.85
3725 3756 1.374947 GTAGGCTTGAGTGGCACCA 59.625 57.895 15.27 9.38 34.73 4.17
3730 3761 0.391263 GGGAACGTAGGCTTGAGTGG 60.391 60.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.