Multiple sequence alignment - TraesCS1A01G411100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G411100 chr1A 100.000 2858 0 0 1 2858 571896684 571893827 0.000000e+00 5278.0
1 TraesCS1A01G411100 chr1D 90.016 1933 104 42 410 2296 475982160 475980271 0.000000e+00 2418.0
2 TraesCS1A01G411100 chr1D 84.977 426 33 18 2385 2784 475980194 475979774 1.230000e-108 403.0
3 TraesCS1A01G411100 chr1B 89.786 1821 90 42 536 2303 662194601 662192824 0.000000e+00 2244.0
4 TraesCS1A01G411100 chr1B 80.464 517 48 22 2376 2858 662192750 662192253 2.110000e-91 346.0
5 TraesCS1A01G411100 chr1B 96.667 60 2 0 2799 2858 662187099 662187040 1.810000e-17 100.0
6 TraesCS1A01G411100 chr6B 83.051 177 28 2 1310 1485 474749463 474749288 2.950000e-35 159.0
7 TraesCS1A01G411100 chr6B 79.487 117 21 3 36 151 484535948 484535834 2.360000e-11 80.5
8 TraesCS1A01G411100 chr7D 80.571 175 34 0 1308 1482 582458647 582458821 4.970000e-28 135.0
9 TraesCS1A01G411100 chr7A 78.607 201 43 0 1285 1485 674286738 674286938 1.790000e-27 134.0
10 TraesCS1A01G411100 chr2D 80.220 182 32 4 1308 1487 607283906 607284085 1.790000e-27 134.0
11 TraesCS1A01G411100 chr2D 78.191 188 35 6 1306 1490 603141916 603141732 6.470000e-22 115.0
12 TraesCS1A01G411100 chr2B 80.000 185 33 4 1308 1490 739369414 739369232 1.790000e-27 134.0
13 TraesCS1A01G411100 chr2A 80.220 182 32 4 1308 1487 738921987 738922166 1.790000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G411100 chr1A 571893827 571896684 2857 True 5278.0 5278 100.0000 1 2858 1 chr1A.!!$R1 2857
1 TraesCS1A01G411100 chr1D 475979774 475982160 2386 True 1410.5 2418 87.4965 410 2784 2 chr1D.!!$R1 2374
2 TraesCS1A01G411100 chr1B 662192253 662194601 2348 True 1295.0 2244 85.1250 536 2858 2 chr1B.!!$R2 2322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.0293 ACAAGTCGTTGTGCATGTGC 59.971 50.0 0.0 0.0 45.58 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1906 0.106819 TCGGTCTAGTCCTACTGGCC 60.107 60.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.029300 ACAAGTCGTTGTGCATGTGC 59.971 50.000 0.00 0.00 45.58 4.57
38 39 0.661187 CAAGTCGTTGTGCATGTGCC 60.661 55.000 2.07 0.00 41.18 5.01
39 40 1.795170 AAGTCGTTGTGCATGTGCCC 61.795 55.000 2.07 0.00 41.18 5.36
40 41 2.983030 TCGTTGTGCATGTGCCCC 60.983 61.111 2.07 0.00 41.18 5.80
41 42 4.403137 CGTTGTGCATGTGCCCCG 62.403 66.667 2.07 0.00 41.18 5.73
42 43 2.983030 GTTGTGCATGTGCCCCGA 60.983 61.111 2.07 0.00 41.18 5.14
43 44 2.203408 TTGTGCATGTGCCCCGAA 60.203 55.556 2.07 0.00 41.18 4.30
44 45 2.267351 TTGTGCATGTGCCCCGAAG 61.267 57.895 2.07 0.00 41.18 3.79
45 46 3.443045 GTGCATGTGCCCCGAAGG 61.443 66.667 2.07 0.00 43.95 3.46
57 58 3.081133 CGAAGGACCGACGCATTG 58.919 61.111 0.00 0.00 0.00 2.82
58 59 2.452813 CGAAGGACCGACGCATTGG 61.453 63.158 0.00 0.00 35.11 3.16
59 60 1.079405 GAAGGACCGACGCATTGGA 60.079 57.895 0.00 0.00 32.87 3.53
60 61 1.079127 AAGGACCGACGCATTGGAG 60.079 57.895 0.00 0.00 32.87 3.86
61 62 3.195698 GGACCGACGCATTGGAGC 61.196 66.667 0.00 0.00 32.87 4.70
62 63 3.195698 GACCGACGCATTGGAGCC 61.196 66.667 0.00 0.00 32.87 4.70
63 64 3.950794 GACCGACGCATTGGAGCCA 62.951 63.158 0.00 0.00 32.87 4.75
64 65 2.514592 CCGACGCATTGGAGCCAT 60.515 61.111 0.00 0.00 0.00 4.40
65 66 1.227527 CCGACGCATTGGAGCCATA 60.228 57.895 0.00 0.00 0.00 2.74
66 67 1.224069 CCGACGCATTGGAGCCATAG 61.224 60.000 0.00 0.00 0.00 2.23
67 68 0.530650 CGACGCATTGGAGCCATAGT 60.531 55.000 0.00 0.00 0.00 2.12
68 69 1.221414 GACGCATTGGAGCCATAGTC 58.779 55.000 0.00 0.00 0.00 2.59
69 70 0.541392 ACGCATTGGAGCCATAGTCA 59.459 50.000 0.00 0.00 0.00 3.41
70 71 1.141657 ACGCATTGGAGCCATAGTCAT 59.858 47.619 0.00 0.00 0.00 3.06
71 72 1.802960 CGCATTGGAGCCATAGTCATC 59.197 52.381 0.00 0.00 0.00 2.92
72 73 1.802960 GCATTGGAGCCATAGTCATCG 59.197 52.381 0.00 0.00 0.00 3.84
73 74 2.548707 GCATTGGAGCCATAGTCATCGA 60.549 50.000 0.00 0.00 0.00 3.59
74 75 3.867600 GCATTGGAGCCATAGTCATCGAT 60.868 47.826 0.00 0.00 0.00 3.59
75 76 3.391506 TTGGAGCCATAGTCATCGATG 57.608 47.619 19.61 19.61 0.00 3.84
76 77 2.319844 TGGAGCCATAGTCATCGATGT 58.680 47.619 24.09 9.42 0.00 3.06
77 78 2.700371 TGGAGCCATAGTCATCGATGTT 59.300 45.455 24.09 15.98 0.00 2.71
78 79 3.062763 GGAGCCATAGTCATCGATGTTG 58.937 50.000 24.09 16.37 0.00 3.33
79 80 3.243873 GGAGCCATAGTCATCGATGTTGA 60.244 47.826 24.09 11.17 0.00 3.18
80 81 4.371786 GAGCCATAGTCATCGATGTTGAA 58.628 43.478 24.09 9.65 0.00 2.69
81 82 4.965814 AGCCATAGTCATCGATGTTGAAT 58.034 39.130 24.09 8.90 0.00 2.57
82 83 4.993584 AGCCATAGTCATCGATGTTGAATC 59.006 41.667 24.09 9.92 0.00 2.52
83 84 4.153117 GCCATAGTCATCGATGTTGAATCC 59.847 45.833 24.09 6.87 0.00 3.01
84 85 5.545588 CCATAGTCATCGATGTTGAATCCT 58.454 41.667 24.09 11.86 0.00 3.24
85 86 5.994054 CCATAGTCATCGATGTTGAATCCTT 59.006 40.000 24.09 4.46 0.00 3.36
86 87 7.154656 CCATAGTCATCGATGTTGAATCCTTA 58.845 38.462 24.09 0.00 0.00 2.69
87 88 7.657354 CCATAGTCATCGATGTTGAATCCTTAA 59.343 37.037 24.09 0.00 0.00 1.85
88 89 9.045223 CATAGTCATCGATGTTGAATCCTTAAA 57.955 33.333 24.09 0.00 0.00 1.52
89 90 7.921786 AGTCATCGATGTTGAATCCTTAAAA 57.078 32.000 24.09 0.00 0.00 1.52
90 91 8.511604 AGTCATCGATGTTGAATCCTTAAAAT 57.488 30.769 24.09 0.00 0.00 1.82
91 92 8.616076 AGTCATCGATGTTGAATCCTTAAAATC 58.384 33.333 24.09 0.00 0.00 2.17
92 93 7.584123 GTCATCGATGTTGAATCCTTAAAATCG 59.416 37.037 24.09 0.00 37.58 3.34
93 94 7.494298 TCATCGATGTTGAATCCTTAAAATCGA 59.506 33.333 24.09 12.78 45.83 3.59
94 95 7.786178 TCGATGTTGAATCCTTAAAATCGAT 57.214 32.000 7.84 0.00 39.57 3.59
95 96 8.208718 TCGATGTTGAATCCTTAAAATCGATT 57.791 30.769 4.39 4.39 39.57 3.34
96 97 8.335356 TCGATGTTGAATCCTTAAAATCGATTC 58.665 33.333 11.83 0.00 39.57 2.52
97 98 8.122330 CGATGTTGAATCCTTAAAATCGATTCA 58.878 33.333 11.83 7.44 46.21 2.57
102 103 7.684670 TGAATCCTTAAAATCGATTCAGAACG 58.315 34.615 11.83 0.00 44.20 3.95
103 104 5.464965 TCCTTAAAATCGATTCAGAACGC 57.535 39.130 11.83 0.00 0.00 4.84
104 105 4.331717 TCCTTAAAATCGATTCAGAACGCC 59.668 41.667 11.83 0.00 0.00 5.68
105 106 4.495844 CCTTAAAATCGATTCAGAACGCCC 60.496 45.833 11.83 0.00 0.00 6.13
106 107 2.107950 AAATCGATTCAGAACGCCCA 57.892 45.000 11.83 0.00 0.00 5.36
107 108 2.107950 AATCGATTCAGAACGCCCAA 57.892 45.000 4.39 0.00 0.00 4.12
108 109 1.369625 ATCGATTCAGAACGCCCAAC 58.630 50.000 0.00 0.00 0.00 3.77
109 110 0.034198 TCGATTCAGAACGCCCAACA 59.966 50.000 0.00 0.00 0.00 3.33
110 111 0.165944 CGATTCAGAACGCCCAACAC 59.834 55.000 0.00 0.00 0.00 3.32
111 112 0.521735 GATTCAGAACGCCCAACACC 59.478 55.000 0.00 0.00 0.00 4.16
112 113 0.179004 ATTCAGAACGCCCAACACCA 60.179 50.000 0.00 0.00 0.00 4.17
113 114 0.394488 TTCAGAACGCCCAACACCAA 60.394 50.000 0.00 0.00 0.00 3.67
114 115 0.394488 TCAGAACGCCCAACACCAAA 60.394 50.000 0.00 0.00 0.00 3.28
115 116 0.673437 CAGAACGCCCAACACCAAAT 59.327 50.000 0.00 0.00 0.00 2.32
116 117 0.958822 AGAACGCCCAACACCAAATC 59.041 50.000 0.00 0.00 0.00 2.17
117 118 0.958822 GAACGCCCAACACCAAATCT 59.041 50.000 0.00 0.00 0.00 2.40
118 119 0.958822 AACGCCCAACACCAAATCTC 59.041 50.000 0.00 0.00 0.00 2.75
119 120 1.234615 ACGCCCAACACCAAATCTCG 61.235 55.000 0.00 0.00 0.00 4.04
120 121 1.212751 GCCCAACACCAAATCTCGC 59.787 57.895 0.00 0.00 0.00 5.03
121 122 1.883021 CCCAACACCAAATCTCGCC 59.117 57.895 0.00 0.00 0.00 5.54
122 123 0.893270 CCCAACACCAAATCTCGCCA 60.893 55.000 0.00 0.00 0.00 5.69
123 124 1.176527 CCAACACCAAATCTCGCCAT 58.823 50.000 0.00 0.00 0.00 4.40
124 125 1.545582 CCAACACCAAATCTCGCCATT 59.454 47.619 0.00 0.00 0.00 3.16
125 126 2.598589 CAACACCAAATCTCGCCATTG 58.401 47.619 0.00 0.00 0.00 2.82
126 127 0.527565 ACACCAAATCTCGCCATTGC 59.472 50.000 0.00 0.00 0.00 3.56
142 143 2.555782 GCGCATGCACGACAAGAA 59.444 55.556 19.57 0.00 42.15 2.52
143 144 1.082169 GCGCATGCACGACAAGAAA 60.082 52.632 19.57 0.00 42.15 2.52
144 145 1.330080 GCGCATGCACGACAAGAAAC 61.330 55.000 19.57 0.00 42.15 2.78
145 146 0.725784 CGCATGCACGACAAGAAACC 60.726 55.000 19.57 0.00 34.06 3.27
146 147 0.387239 GCATGCACGACAAGAAACCC 60.387 55.000 14.21 0.00 0.00 4.11
147 148 1.238439 CATGCACGACAAGAAACCCT 58.762 50.000 0.00 0.00 0.00 4.34
148 149 2.422597 CATGCACGACAAGAAACCCTA 58.577 47.619 0.00 0.00 0.00 3.53
149 150 2.623878 TGCACGACAAGAAACCCTAA 57.376 45.000 0.00 0.00 0.00 2.69
150 151 2.215196 TGCACGACAAGAAACCCTAAC 58.785 47.619 0.00 0.00 0.00 2.34
151 152 2.215196 GCACGACAAGAAACCCTAACA 58.785 47.619 0.00 0.00 0.00 2.41
152 153 2.614983 GCACGACAAGAAACCCTAACAA 59.385 45.455 0.00 0.00 0.00 2.83
153 154 3.547413 GCACGACAAGAAACCCTAACAAC 60.547 47.826 0.00 0.00 0.00 3.32
154 155 3.623960 CACGACAAGAAACCCTAACAACA 59.376 43.478 0.00 0.00 0.00 3.33
155 156 4.274950 CACGACAAGAAACCCTAACAACAT 59.725 41.667 0.00 0.00 0.00 2.71
156 157 4.274950 ACGACAAGAAACCCTAACAACATG 59.725 41.667 0.00 0.00 0.00 3.21
157 158 4.320202 CGACAAGAAACCCTAACAACATGG 60.320 45.833 0.00 0.00 0.00 3.66
158 159 3.320826 ACAAGAAACCCTAACAACATGGC 59.679 43.478 0.00 0.00 0.00 4.40
159 160 3.237268 AGAAACCCTAACAACATGGCA 57.763 42.857 0.00 0.00 0.00 4.92
160 161 3.157087 AGAAACCCTAACAACATGGCAG 58.843 45.455 0.00 0.00 0.00 4.85
161 162 2.969821 AACCCTAACAACATGGCAGA 57.030 45.000 0.00 0.00 0.00 4.26
162 163 3.456380 AACCCTAACAACATGGCAGAT 57.544 42.857 0.00 0.00 0.00 2.90
163 164 2.726821 ACCCTAACAACATGGCAGATG 58.273 47.619 0.00 0.00 0.00 2.90
164 165 2.026641 CCCTAACAACATGGCAGATGG 58.973 52.381 0.00 0.00 0.00 3.51
165 166 1.406539 CCTAACAACATGGCAGATGGC 59.593 52.381 0.00 0.00 43.74 4.40
166 167 1.064505 CTAACAACATGGCAGATGGCG 59.935 52.381 0.00 0.00 46.16 5.69
167 168 1.597797 AACAACATGGCAGATGGCGG 61.598 55.000 0.00 0.00 46.16 6.13
168 169 2.440796 AACATGGCAGATGGCGGG 60.441 61.111 0.00 0.00 46.16 6.13
169 170 2.982643 AACATGGCAGATGGCGGGA 61.983 57.895 0.00 0.00 46.16 5.14
170 171 2.124193 CATGGCAGATGGCGGGAA 60.124 61.111 1.68 0.00 46.16 3.97
171 172 1.529948 CATGGCAGATGGCGGGAAT 60.530 57.895 1.68 0.00 46.16 3.01
172 173 1.228367 ATGGCAGATGGCGGGAATC 60.228 57.895 1.68 0.00 46.16 2.52
173 174 1.998444 ATGGCAGATGGCGGGAATCA 61.998 55.000 1.68 0.00 46.16 2.57
174 175 1.453745 GGCAGATGGCGGGAATCAA 60.454 57.895 0.00 0.00 46.16 2.57
175 176 1.728490 GGCAGATGGCGGGAATCAAC 61.728 60.000 0.00 0.00 46.16 3.18
176 177 1.031571 GCAGATGGCGGGAATCAACA 61.032 55.000 0.00 0.00 0.00 3.33
177 178 1.683943 CAGATGGCGGGAATCAACAT 58.316 50.000 0.00 0.00 0.00 2.71
178 179 2.026641 CAGATGGCGGGAATCAACATT 58.973 47.619 0.00 0.00 0.00 2.71
179 180 2.026641 AGATGGCGGGAATCAACATTG 58.973 47.619 0.00 0.00 0.00 2.82
180 181 2.023673 GATGGCGGGAATCAACATTGA 58.976 47.619 0.00 0.00 42.14 2.57
181 182 1.916506 TGGCGGGAATCAACATTGAA 58.083 45.000 0.00 0.00 41.13 2.69
182 183 2.455557 TGGCGGGAATCAACATTGAAT 58.544 42.857 0.00 0.00 41.13 2.57
183 184 2.426738 TGGCGGGAATCAACATTGAATC 59.573 45.455 0.00 0.00 41.13 2.52
184 185 2.689983 GGCGGGAATCAACATTGAATCT 59.310 45.455 9.06 0.00 41.13 2.40
185 186 3.131046 GGCGGGAATCAACATTGAATCTT 59.869 43.478 9.06 0.00 41.13 2.40
186 187 4.381932 GGCGGGAATCAACATTGAATCTTT 60.382 41.667 9.06 0.00 41.13 2.52
187 188 4.563976 GCGGGAATCAACATTGAATCTTTG 59.436 41.667 9.06 2.36 41.13 2.77
188 189 5.713025 CGGGAATCAACATTGAATCTTTGT 58.287 37.500 9.06 0.00 41.13 2.83
189 190 5.801947 CGGGAATCAACATTGAATCTTTGTC 59.198 40.000 9.06 0.00 41.13 3.18
190 191 5.801947 GGGAATCAACATTGAATCTTTGTCG 59.198 40.000 9.06 0.00 41.13 4.35
191 192 6.349280 GGGAATCAACATTGAATCTTTGTCGA 60.349 38.462 9.06 0.00 41.13 4.20
192 193 6.744537 GGAATCAACATTGAATCTTTGTCGAG 59.255 38.462 9.06 0.00 41.13 4.04
193 194 6.808008 ATCAACATTGAATCTTTGTCGAGT 57.192 33.333 0.00 0.00 41.13 4.18
194 195 6.228273 TCAACATTGAATCTTTGTCGAGTC 57.772 37.500 0.00 0.00 33.55 3.36
195 196 5.179368 TCAACATTGAATCTTTGTCGAGTCC 59.821 40.000 0.00 0.00 33.55 3.85
196 197 4.641396 ACATTGAATCTTTGTCGAGTCCA 58.359 39.130 0.00 0.00 0.00 4.02
197 198 5.248640 ACATTGAATCTTTGTCGAGTCCAT 58.751 37.500 0.00 0.00 0.00 3.41
198 199 5.352569 ACATTGAATCTTTGTCGAGTCCATC 59.647 40.000 0.00 0.00 0.00 3.51
199 200 4.808414 TGAATCTTTGTCGAGTCCATCT 57.192 40.909 0.00 0.00 0.00 2.90
200 201 4.748892 TGAATCTTTGTCGAGTCCATCTC 58.251 43.478 0.00 0.00 39.62 2.75
201 202 3.810310 ATCTTTGTCGAGTCCATCTCC 57.190 47.619 0.00 0.00 39.84 3.71
202 203 2.525368 TCTTTGTCGAGTCCATCTCCA 58.475 47.619 0.00 0.00 39.84 3.86
203 204 3.099905 TCTTTGTCGAGTCCATCTCCAT 58.900 45.455 0.00 0.00 39.84 3.41
204 205 2.967599 TTGTCGAGTCCATCTCCATG 57.032 50.000 0.00 0.00 39.84 3.66
205 206 2.143876 TGTCGAGTCCATCTCCATGA 57.856 50.000 0.00 0.00 39.84 3.07
206 207 2.456577 TGTCGAGTCCATCTCCATGAA 58.543 47.619 0.00 0.00 39.84 2.57
207 208 2.166459 TGTCGAGTCCATCTCCATGAAC 59.834 50.000 0.00 0.00 39.84 3.18
208 209 1.757118 TCGAGTCCATCTCCATGAACC 59.243 52.381 0.00 0.00 39.84 3.62
209 210 1.536922 CGAGTCCATCTCCATGAACCG 60.537 57.143 0.00 0.00 39.84 4.44
210 211 1.757118 GAGTCCATCTCCATGAACCGA 59.243 52.381 0.00 0.00 37.22 4.69
211 212 1.482593 AGTCCATCTCCATGAACCGAC 59.517 52.381 0.00 0.00 30.57 4.79
212 213 1.482593 GTCCATCTCCATGAACCGACT 59.517 52.381 0.00 0.00 30.57 4.18
213 214 1.757118 TCCATCTCCATGAACCGACTC 59.243 52.381 0.00 0.00 30.57 3.36
214 215 1.759445 CCATCTCCATGAACCGACTCT 59.241 52.381 0.00 0.00 30.57 3.24
215 216 2.959030 CCATCTCCATGAACCGACTCTA 59.041 50.000 0.00 0.00 30.57 2.43
216 217 3.005261 CCATCTCCATGAACCGACTCTAG 59.995 52.174 0.00 0.00 30.57 2.43
217 218 3.646736 TCTCCATGAACCGACTCTAGA 57.353 47.619 0.00 0.00 0.00 2.43
218 219 3.964411 TCTCCATGAACCGACTCTAGAA 58.036 45.455 0.00 0.00 0.00 2.10
219 220 4.341487 TCTCCATGAACCGACTCTAGAAA 58.659 43.478 0.00 0.00 0.00 2.52
220 221 4.399618 TCTCCATGAACCGACTCTAGAAAG 59.600 45.833 0.00 0.00 0.00 2.62
221 222 4.341487 TCCATGAACCGACTCTAGAAAGA 58.659 43.478 0.00 0.00 0.00 2.52
222 223 4.956700 TCCATGAACCGACTCTAGAAAGAT 59.043 41.667 0.00 0.00 0.00 2.40
223 224 5.067936 TCCATGAACCGACTCTAGAAAGATC 59.932 44.000 0.00 0.00 0.00 2.75
224 225 5.068460 CCATGAACCGACTCTAGAAAGATCT 59.932 44.000 0.00 0.00 39.82 2.75
225 226 6.406400 CCATGAACCGACTCTAGAAAGATCTT 60.406 42.308 0.88 0.88 37.10 2.40
226 227 5.955488 TGAACCGACTCTAGAAAGATCTTG 58.045 41.667 9.17 0.00 37.10 3.02
227 228 5.710567 TGAACCGACTCTAGAAAGATCTTGA 59.289 40.000 9.17 0.73 37.10 3.02
235 236 7.403312 CTCTAGAAAGATCTTGAGTCCAGAA 57.597 40.000 9.17 0.00 45.08 3.02
236 237 7.403312 TCTAGAAAGATCTTGAGTCCAGAAG 57.597 40.000 9.17 0.00 37.10 2.85
237 238 7.178573 TCTAGAAAGATCTTGAGTCCAGAAGA 58.821 38.462 9.17 2.02 37.10 2.87
238 239 6.036577 AGAAAGATCTTGAGTCCAGAAGAC 57.963 41.667 9.17 0.00 38.08 3.01
239 240 5.046663 AGAAAGATCTTGAGTCCAGAAGACC 60.047 44.000 9.17 0.00 38.41 3.85
240 241 7.430738 AGAAAGATCTTGAGTCCAGAAGACCA 61.431 42.308 9.17 0.00 38.41 4.02
241 242 9.148509 AGAAAGATCTTGAGTCCAGAAGACCAG 62.149 44.444 9.17 0.00 38.41 4.00
247 248 2.550830 GTCCAGAAGACCAGCTCAAA 57.449 50.000 0.00 0.00 39.84 2.69
248 249 2.421619 GTCCAGAAGACCAGCTCAAAG 58.578 52.381 0.00 0.00 39.84 2.77
249 250 2.037772 GTCCAGAAGACCAGCTCAAAGA 59.962 50.000 0.00 0.00 39.84 2.52
250 251 2.909006 TCCAGAAGACCAGCTCAAAGAT 59.091 45.455 0.00 0.00 0.00 2.40
251 252 4.081420 GTCCAGAAGACCAGCTCAAAGATA 60.081 45.833 0.00 0.00 39.84 1.98
252 253 4.532126 TCCAGAAGACCAGCTCAAAGATAA 59.468 41.667 0.00 0.00 0.00 1.75
253 254 5.013079 TCCAGAAGACCAGCTCAAAGATAAA 59.987 40.000 0.00 0.00 0.00 1.40
254 255 5.707298 CCAGAAGACCAGCTCAAAGATAAAA 59.293 40.000 0.00 0.00 0.00 1.52
255 256 6.348868 CCAGAAGACCAGCTCAAAGATAAAAC 60.349 42.308 0.00 0.00 0.00 2.43
256 257 5.409826 AGAAGACCAGCTCAAAGATAAAACG 59.590 40.000 0.00 0.00 0.00 3.60
257 258 3.437049 AGACCAGCTCAAAGATAAAACGC 59.563 43.478 0.00 0.00 0.00 4.84
258 259 2.488153 ACCAGCTCAAAGATAAAACGCC 59.512 45.455 0.00 0.00 0.00 5.68
259 260 2.476185 CCAGCTCAAAGATAAAACGCCG 60.476 50.000 0.00 0.00 0.00 6.46
260 261 1.130561 AGCTCAAAGATAAAACGCCGC 59.869 47.619 0.00 0.00 0.00 6.53
261 262 1.794076 GCTCAAAGATAAAACGCCGCC 60.794 52.381 0.00 0.00 0.00 6.13
262 263 1.466950 CTCAAAGATAAAACGCCGCCA 59.533 47.619 0.00 0.00 0.00 5.69
263 264 2.088423 TCAAAGATAAAACGCCGCCAT 58.912 42.857 0.00 0.00 0.00 4.40
264 265 2.490115 TCAAAGATAAAACGCCGCCATT 59.510 40.909 0.00 0.00 0.00 3.16
265 266 2.559998 AAGATAAAACGCCGCCATTG 57.440 45.000 0.00 0.00 0.00 2.82
266 267 1.745232 AGATAAAACGCCGCCATTGA 58.255 45.000 0.00 0.00 0.00 2.57
267 268 1.400494 AGATAAAACGCCGCCATTGAC 59.600 47.619 0.00 0.00 0.00 3.18
268 269 0.454196 ATAAAACGCCGCCATTGACC 59.546 50.000 0.00 0.00 0.00 4.02
269 270 1.587933 TAAAACGCCGCCATTGACCC 61.588 55.000 0.00 0.00 0.00 4.46
270 271 4.652131 AACGCCGCCATTGACCCA 62.652 61.111 0.00 0.00 0.00 4.51
271 272 4.652131 ACGCCGCCATTGACCCAA 62.652 61.111 0.00 0.00 0.00 4.12
272 273 3.814268 CGCCGCCATTGACCCAAG 61.814 66.667 0.00 0.00 0.00 3.61
273 274 4.133796 GCCGCCATTGACCCAAGC 62.134 66.667 0.00 0.00 0.00 4.01
274 275 2.676121 CCGCCATTGACCCAAGCA 60.676 61.111 0.00 0.00 0.00 3.91
275 276 2.568090 CGCCATTGACCCAAGCAC 59.432 61.111 0.00 0.00 0.00 4.40
276 277 1.973281 CGCCATTGACCCAAGCACT 60.973 57.895 0.00 0.00 0.00 4.40
277 278 1.885871 GCCATTGACCCAAGCACTC 59.114 57.895 0.00 0.00 0.00 3.51
278 279 0.610232 GCCATTGACCCAAGCACTCT 60.610 55.000 0.00 0.00 0.00 3.24
279 280 1.457346 CCATTGACCCAAGCACTCTC 58.543 55.000 0.00 0.00 0.00 3.20
280 281 1.457346 CATTGACCCAAGCACTCTCC 58.543 55.000 0.00 0.00 0.00 3.71
281 282 1.004044 CATTGACCCAAGCACTCTCCT 59.996 52.381 0.00 0.00 0.00 3.69
282 283 1.140312 TTGACCCAAGCACTCTCCTT 58.860 50.000 0.00 0.00 0.00 3.36
283 284 0.397941 TGACCCAAGCACTCTCCTTG 59.602 55.000 0.00 0.00 39.44 3.61
284 285 0.687354 GACCCAAGCACTCTCCTTGA 59.313 55.000 2.93 0.00 41.64 3.02
286 287 0.979665 CCCAAGCACTCTCCTTGAGA 59.020 55.000 2.93 0.00 45.39 3.27
299 300 5.871465 CTCCTTGAGAGAACTAAAAAGCC 57.129 43.478 0.00 0.00 46.50 4.35
300 301 5.304686 TCCTTGAGAGAACTAAAAAGCCA 57.695 39.130 0.00 0.00 0.00 4.75
301 302 5.880901 TCCTTGAGAGAACTAAAAAGCCAT 58.119 37.500 0.00 0.00 0.00 4.40
302 303 7.016153 TCCTTGAGAGAACTAAAAAGCCATA 57.984 36.000 0.00 0.00 0.00 2.74
303 304 7.458397 TCCTTGAGAGAACTAAAAAGCCATAA 58.542 34.615 0.00 0.00 0.00 1.90
304 305 7.390718 TCCTTGAGAGAACTAAAAAGCCATAAC 59.609 37.037 0.00 0.00 0.00 1.89
305 306 7.174946 CCTTGAGAGAACTAAAAAGCCATAACA 59.825 37.037 0.00 0.00 0.00 2.41
306 307 7.435068 TGAGAGAACTAAAAAGCCATAACAC 57.565 36.000 0.00 0.00 0.00 3.32
307 308 6.995686 TGAGAGAACTAAAAAGCCATAACACA 59.004 34.615 0.00 0.00 0.00 3.72
308 309 7.500892 TGAGAGAACTAAAAAGCCATAACACAA 59.499 33.333 0.00 0.00 0.00 3.33
309 310 8.232913 AGAGAACTAAAAAGCCATAACACAAA 57.767 30.769 0.00 0.00 0.00 2.83
310 311 8.135529 AGAGAACTAAAAAGCCATAACACAAAC 58.864 33.333 0.00 0.00 0.00 2.93
311 312 8.007405 AGAACTAAAAAGCCATAACACAAACT 57.993 30.769 0.00 0.00 0.00 2.66
312 313 9.127277 AGAACTAAAAAGCCATAACACAAACTA 57.873 29.630 0.00 0.00 0.00 2.24
313 314 9.908152 GAACTAAAAAGCCATAACACAAACTAT 57.092 29.630 0.00 0.00 0.00 2.12
318 319 9.908152 AAAAAGCCATAACACAAACTATTAGTC 57.092 29.630 0.00 0.00 0.00 2.59
319 320 6.903883 AGCCATAACACAAACTATTAGTCG 57.096 37.500 0.00 0.00 0.00 4.18
320 321 6.636705 AGCCATAACACAAACTATTAGTCGA 58.363 36.000 0.00 0.00 0.00 4.20
321 322 7.101054 AGCCATAACACAAACTATTAGTCGAA 58.899 34.615 0.00 0.00 0.00 3.71
322 323 7.277981 AGCCATAACACAAACTATTAGTCGAAG 59.722 37.037 0.00 0.00 0.00 3.79
323 324 7.064253 GCCATAACACAAACTATTAGTCGAAGT 59.936 37.037 0.00 0.00 0.00 3.01
324 325 8.592998 CCATAACACAAACTATTAGTCGAAGTC 58.407 37.037 0.00 0.00 0.00 3.01
325 326 6.686130 AACACAAACTATTAGTCGAAGTCG 57.314 37.500 0.00 0.00 41.45 4.18
335 336 2.264124 TCGAAGTCGAGTCTTGGGG 58.736 57.895 0.00 0.00 44.22 4.96
336 337 0.251033 TCGAAGTCGAGTCTTGGGGA 60.251 55.000 0.00 0.00 44.22 4.81
337 338 0.818296 CGAAGTCGAGTCTTGGGGAT 59.182 55.000 0.00 0.00 43.02 3.85
338 339 1.204941 CGAAGTCGAGTCTTGGGGATT 59.795 52.381 0.00 0.00 43.02 3.01
339 340 2.735762 CGAAGTCGAGTCTTGGGGATTC 60.736 54.545 0.00 0.00 43.02 2.52
340 341 2.239681 AGTCGAGTCTTGGGGATTCT 57.760 50.000 0.00 0.00 0.00 2.40
341 342 2.104170 AGTCGAGTCTTGGGGATTCTC 58.896 52.381 0.00 0.00 0.00 2.87
342 343 1.137282 GTCGAGTCTTGGGGATTCTCC 59.863 57.143 0.00 0.00 35.23 3.71
343 344 1.007238 TCGAGTCTTGGGGATTCTCCT 59.993 52.381 3.76 0.00 36.57 3.69
344 345 1.410882 CGAGTCTTGGGGATTCTCCTC 59.589 57.143 3.76 0.00 37.60 3.71
345 346 1.765904 GAGTCTTGGGGATTCTCCTCC 59.234 57.143 3.76 0.00 35.67 4.30
346 347 1.367848 AGTCTTGGGGATTCTCCTCCT 59.632 52.381 3.76 0.00 35.67 3.69
347 348 1.488393 GTCTTGGGGATTCTCCTCCTG 59.512 57.143 3.76 0.00 35.67 3.86
348 349 0.842635 CTTGGGGATTCTCCTCCTGG 59.157 60.000 3.76 0.00 35.67 4.45
349 350 1.281925 TTGGGGATTCTCCTCCTGGC 61.282 60.000 3.76 0.00 35.67 4.85
350 351 1.694169 GGGGATTCTCCTCCTGGCA 60.694 63.158 0.00 0.00 36.57 4.92
351 352 1.529309 GGGATTCTCCTCCTGGCAC 59.471 63.158 0.00 0.00 36.57 5.01
352 353 0.985490 GGGATTCTCCTCCTGGCACT 60.985 60.000 0.00 0.00 36.57 4.40
353 354 0.179936 GGATTCTCCTCCTGGCACTG 59.820 60.000 0.00 0.00 32.53 3.66
374 375 3.903783 GCTGGAGCGGCATACAAA 58.096 55.556 1.45 0.00 35.55 2.83
375 376 2.179764 GCTGGAGCGGCATACAAAA 58.820 52.632 1.45 0.00 35.55 2.44
376 377 0.099436 GCTGGAGCGGCATACAAAAG 59.901 55.000 1.45 0.00 35.55 2.27
377 378 0.734889 CTGGAGCGGCATACAAAAGG 59.265 55.000 1.45 0.00 0.00 3.11
378 379 0.679640 TGGAGCGGCATACAAAAGGG 60.680 55.000 1.45 0.00 0.00 3.95
379 380 0.393808 GGAGCGGCATACAAAAGGGA 60.394 55.000 1.45 0.00 0.00 4.20
380 381 1.017387 GAGCGGCATACAAAAGGGAG 58.983 55.000 1.45 0.00 0.00 4.30
381 382 0.394352 AGCGGCATACAAAAGGGAGG 60.394 55.000 1.45 0.00 0.00 4.30
382 383 2.004808 GCGGCATACAAAAGGGAGGC 62.005 60.000 0.00 0.00 0.00 4.70
383 384 0.679640 CGGCATACAAAAGGGAGGCA 60.680 55.000 0.00 0.00 0.00 4.75
384 385 1.555967 GGCATACAAAAGGGAGGCAA 58.444 50.000 0.00 0.00 0.00 4.52
385 386 1.899142 GGCATACAAAAGGGAGGCAAA 59.101 47.619 0.00 0.00 0.00 3.68
386 387 2.501316 GGCATACAAAAGGGAGGCAAAT 59.499 45.455 0.00 0.00 0.00 2.32
387 388 3.430790 GGCATACAAAAGGGAGGCAAATC 60.431 47.826 0.00 0.00 0.00 2.17
388 389 3.430790 GCATACAAAAGGGAGGCAAATCC 60.431 47.826 0.00 0.00 38.76 3.01
389 390 2.397044 ACAAAAGGGAGGCAAATCCA 57.603 45.000 4.47 0.00 41.52 3.41
390 391 2.906568 ACAAAAGGGAGGCAAATCCAT 58.093 42.857 4.47 0.00 41.52 3.41
391 392 4.059773 ACAAAAGGGAGGCAAATCCATA 57.940 40.909 4.47 0.00 41.52 2.74
392 393 4.026052 ACAAAAGGGAGGCAAATCCATAG 58.974 43.478 4.47 0.00 41.52 2.23
393 394 3.319031 AAAGGGAGGCAAATCCATAGG 57.681 47.619 4.47 0.00 41.52 2.57
394 395 0.480252 AGGGAGGCAAATCCATAGGC 59.520 55.000 4.47 0.00 41.52 3.93
395 396 0.480252 GGGAGGCAAATCCATAGGCT 59.520 55.000 0.00 0.00 41.52 4.58
396 397 1.133356 GGGAGGCAAATCCATAGGCTT 60.133 52.381 0.00 0.00 41.52 4.35
397 398 2.108250 GGGAGGCAAATCCATAGGCTTA 59.892 50.000 0.00 0.00 41.52 3.09
398 399 3.245407 GGGAGGCAAATCCATAGGCTTAT 60.245 47.826 0.00 0.00 41.52 1.73
399 400 4.013050 GGAGGCAAATCCATAGGCTTATC 58.987 47.826 0.00 0.00 39.34 1.75
400 401 3.679389 AGGCAAATCCATAGGCTTATCG 58.321 45.455 0.00 0.00 37.29 2.92
401 402 3.327757 AGGCAAATCCATAGGCTTATCGA 59.672 43.478 0.00 0.00 37.29 3.59
402 403 3.437049 GGCAAATCCATAGGCTTATCGAC 59.563 47.826 0.00 0.00 34.01 4.20
403 404 3.123621 GCAAATCCATAGGCTTATCGACG 59.876 47.826 0.00 0.00 0.00 5.12
404 405 4.556233 CAAATCCATAGGCTTATCGACGA 58.444 43.478 0.00 0.00 0.00 4.20
405 406 4.866508 AATCCATAGGCTTATCGACGAA 57.133 40.909 0.00 0.00 0.00 3.85
406 407 4.866508 ATCCATAGGCTTATCGACGAAA 57.133 40.909 0.00 0.00 0.00 3.46
407 408 4.238761 TCCATAGGCTTATCGACGAAAG 57.761 45.455 0.00 8.35 0.00 2.62
408 409 2.731976 CCATAGGCTTATCGACGAAAGC 59.268 50.000 24.25 24.25 45.88 3.51
414 415 3.301706 GCTTATCGACGAAAGCCTAGAG 58.698 50.000 22.92 7.64 41.80 2.43
423 424 2.619147 GAAAGCCTAGAGGGAACGAAC 58.381 52.381 0.00 0.00 37.23 3.95
428 429 2.234168 GCCTAGAGGGAACGAACTCTTT 59.766 50.000 0.00 0.00 41.05 2.52
429 430 3.851098 CCTAGAGGGAACGAACTCTTTG 58.149 50.000 0.00 0.00 41.05 2.77
430 431 3.258622 CCTAGAGGGAACGAACTCTTTGT 59.741 47.826 0.00 0.00 41.05 2.83
432 433 2.966516 AGAGGGAACGAACTCTTTGTCT 59.033 45.455 0.00 0.00 41.05 3.41
433 434 3.388350 AGAGGGAACGAACTCTTTGTCTT 59.612 43.478 0.00 0.00 41.05 3.01
434 435 4.587684 AGAGGGAACGAACTCTTTGTCTTA 59.412 41.667 0.00 0.00 41.05 2.10
435 436 4.884247 AGGGAACGAACTCTTTGTCTTAG 58.116 43.478 0.00 0.00 0.00 2.18
437 438 4.502777 GGGAACGAACTCTTTGTCTTAGGT 60.503 45.833 0.00 0.00 0.00 3.08
439 440 3.391049 ACGAACTCTTTGTCTTAGGTGC 58.609 45.455 0.00 0.00 0.00 5.01
442 443 1.351350 ACTCTTTGTCTTAGGTGCCCC 59.649 52.381 0.00 0.00 0.00 5.80
443 444 1.630878 CTCTTTGTCTTAGGTGCCCCT 59.369 52.381 0.00 0.00 45.51 4.79
445 446 2.162681 CTTTGTCTTAGGTGCCCCTTG 58.837 52.381 0.00 0.00 42.66 3.61
446 447 0.251165 TTGTCTTAGGTGCCCCTTGC 60.251 55.000 0.00 0.00 42.66 4.01
447 448 1.745489 GTCTTAGGTGCCCCTTGCG 60.745 63.158 0.00 0.00 45.60 4.85
486 488 0.748450 CTGTACCTCGGGCCGAAATA 59.252 55.000 30.59 21.00 34.74 1.40
501 503 6.509418 GCCGAAATAAAGGGCATGATATTA 57.491 37.500 0.00 0.00 46.13 0.98
504 506 8.034804 GCCGAAATAAAGGGCATGATATTATTT 58.965 33.333 13.84 13.84 46.13 1.40
529 533 9.573166 TTTTTCTCATCTCCAATGACTTAAGAA 57.427 29.630 10.09 0.00 0.00 2.52
530 534 8.783833 TTTCTCATCTCCAATGACTTAAGAAG 57.216 34.615 10.09 0.00 0.00 2.85
531 535 7.487822 TCTCATCTCCAATGACTTAAGAAGT 57.512 36.000 10.09 0.00 46.38 3.01
534 538 5.227569 TCTCCAATGACTTAAGAAGTGCA 57.772 39.130 10.09 0.00 43.03 4.57
543 555 5.122869 TGACTTAAGAAGTGCAGAATGATGC 59.877 40.000 10.09 0.00 43.03 3.91
557 569 6.237835 GCAGAATGATGCAATTCTTTGATGTG 60.238 38.462 10.34 1.71 42.92 3.21
560 572 7.876068 AGAATGATGCAATTCTTTGATGTGTTT 59.124 29.630 7.67 0.00 42.92 2.83
612 626 2.881734 TGGTGATCTCTCTGTGTGTCT 58.118 47.619 0.00 0.00 0.00 3.41
617 631 5.221028 GGTGATCTCTCTGTGTGTCTATCTG 60.221 48.000 0.00 0.00 0.00 2.90
618 632 4.337836 TGATCTCTCTGTGTGTCTATCTGC 59.662 45.833 0.00 0.00 0.00 4.26
635 649 1.172180 TGCTCTTCTTTGGGCGGTTG 61.172 55.000 0.00 0.00 0.00 3.77
645 659 0.392863 TGGGCGGTTGATCACATGAG 60.393 55.000 0.00 0.00 0.00 2.90
706 720 1.999735 CGTCACATTAACTCGGTGCAT 59.000 47.619 0.00 0.00 32.69 3.96
707 721 2.029244 CGTCACATTAACTCGGTGCATC 59.971 50.000 0.00 0.00 32.69 3.91
712 726 0.739462 TTAACTCGGTGCATCGCAGG 60.739 55.000 16.22 9.78 40.08 4.85
725 739 3.197265 CATCGCAGGTAATGACACATCA 58.803 45.455 0.00 0.00 39.83 3.07
735 749 2.281484 ACACATCACACACCCGGC 60.281 61.111 0.00 0.00 0.00 6.13
771 785 2.048023 TCGGGCTCGGTTCATACGT 61.048 57.895 5.94 0.00 36.95 3.57
772 786 0.747644 TCGGGCTCGGTTCATACGTA 60.748 55.000 5.94 0.00 36.95 3.57
774 788 1.469595 CGGGCTCGGTTCATACGTAAA 60.470 52.381 0.00 0.00 0.00 2.01
869 897 1.537202 GCACCTGGCTAAGACAAACAG 59.463 52.381 0.00 0.00 40.25 3.16
886 914 2.319844 ACAGACATCTCACACTCCACA 58.680 47.619 0.00 0.00 0.00 4.17
894 922 2.164422 TCTCACACTCCACAGCTAATCG 59.836 50.000 0.00 0.00 0.00 3.34
1125 1153 1.305381 CGTCTTCTCCCACCTCCCT 60.305 63.158 0.00 0.00 0.00 4.20
1128 1156 1.156322 TCTTCTCCCACCTCCCTCCT 61.156 60.000 0.00 0.00 0.00 3.69
1260 1294 4.440127 TCGGGTTACGCGCTTCCC 62.440 66.667 16.86 18.90 43.86 3.97
1266 1300 0.952010 GTTACGCGCTTCCCTTTCCA 60.952 55.000 5.73 0.00 0.00 3.53
1647 1687 0.894184 AGCAGCAGCAGAACAGCAAT 60.894 50.000 3.17 0.00 45.49 3.56
1780 1820 3.322466 CGGAGGGGGTGCTGTCTT 61.322 66.667 0.00 0.00 0.00 3.01
1860 1900 2.468831 GAGATGCTCAACTTCTAGCCG 58.531 52.381 0.00 0.00 37.97 5.52
1861 1901 0.933796 GATGCTCAACTTCTAGCCGC 59.066 55.000 0.00 0.00 37.97 6.53
1862 1902 0.462759 ATGCTCAACTTCTAGCCGCC 60.463 55.000 0.00 0.00 37.97 6.13
1863 1903 1.079127 GCTCAACTTCTAGCCGCCA 60.079 57.895 0.00 0.00 32.40 5.69
1864 1904 1.362406 GCTCAACTTCTAGCCGCCAC 61.362 60.000 0.00 0.00 32.40 5.01
1865 1905 0.741221 CTCAACTTCTAGCCGCCACC 60.741 60.000 0.00 0.00 0.00 4.61
1866 1906 2.100631 CAACTTCTAGCCGCCACCG 61.101 63.158 0.00 0.00 0.00 4.94
1920 1960 2.049802 CGCAAAGCCAACCAGCAG 60.050 61.111 0.00 0.00 34.23 4.24
1937 1990 0.256752 CAGCAAGGTCCATCCATCCA 59.743 55.000 0.00 0.00 39.02 3.41
1938 1991 1.133575 CAGCAAGGTCCATCCATCCAT 60.134 52.381 0.00 0.00 39.02 3.41
1939 1992 1.144503 AGCAAGGTCCATCCATCCATC 59.855 52.381 0.00 0.00 39.02 3.51
2012 2068 1.284408 GAGCCGAGCTCGTAGGATG 59.716 63.158 32.41 18.08 45.85 3.51
2121 2177 6.952938 TCTCCTAGAGACGATACATACTCCTA 59.047 42.308 0.00 0.00 33.35 2.94
2139 2204 6.284459 ACTCCTAATTACTAGCAACTGCATC 58.716 40.000 4.22 0.00 45.16 3.91
2154 2224 1.434622 GCATCCTGCATCTGTCGTGG 61.435 60.000 0.00 0.00 44.26 4.94
2159 2229 3.490759 GCATCTGTCGTGGCGTGG 61.491 66.667 0.00 0.00 0.00 4.94
2169 2239 2.970324 TGGCGTGGCGTGAGTTTC 60.970 61.111 0.00 0.00 0.00 2.78
2213 2288 3.194005 TGTAAAGCTGATCCCCGAATC 57.806 47.619 0.00 0.00 0.00 2.52
2221 2296 1.347707 TGATCCCCGAATCCATAGCAC 59.652 52.381 0.00 0.00 0.00 4.40
2241 2316 5.044558 GCACCTCTACAGTCTTACATAAGC 58.955 45.833 0.00 0.00 33.40 3.09
2318 2430 0.737715 GCTCCACAGTAACAGCGGAG 60.738 60.000 0.00 0.00 45.05 4.63
2348 2466 1.777272 GGAGGAAGAAGGCCATGGTAT 59.223 52.381 14.67 0.00 0.00 2.73
2363 2481 6.455360 CCATGGTATGGTATATTGGCATTC 57.545 41.667 2.57 0.00 45.54 2.67
2364 2482 5.360714 CCATGGTATGGTATATTGGCATTCC 59.639 44.000 2.57 0.00 45.54 3.01
2365 2483 4.929479 TGGTATGGTATATTGGCATTCCC 58.071 43.478 0.00 0.00 0.00 3.97
2366 2484 4.264172 TGGTATGGTATATTGGCATTCCCC 60.264 45.833 0.00 0.00 0.00 4.81
2367 2485 2.990740 TGGTATATTGGCATTCCCCC 57.009 50.000 0.00 0.00 0.00 5.40
2368 2486 2.147849 TGGTATATTGGCATTCCCCCA 58.852 47.619 0.00 0.00 0.00 4.96
2369 2487 2.520120 TGGTATATTGGCATTCCCCCAA 59.480 45.455 0.00 0.00 45.63 4.12
2370 2488 3.051803 TGGTATATTGGCATTCCCCCAAA 60.052 43.478 0.00 0.00 44.80 3.28
2371 2489 4.167319 GGTATATTGGCATTCCCCCAAAT 58.833 43.478 0.00 0.00 44.80 2.32
2372 2490 4.222810 GGTATATTGGCATTCCCCCAAATC 59.777 45.833 0.00 0.00 44.80 2.17
2373 2491 2.574074 ATTGGCATTCCCCCAAATCT 57.426 45.000 0.00 0.00 44.80 2.40
2374 2492 2.340721 TTGGCATTCCCCCAAATCTT 57.659 45.000 0.00 0.00 39.29 2.40
2375 2493 1.570803 TGGCATTCCCCCAAATCTTG 58.429 50.000 0.00 0.00 0.00 3.02
2376 2494 1.203288 TGGCATTCCCCCAAATCTTGT 60.203 47.619 0.00 0.00 0.00 3.16
2377 2495 1.207811 GGCATTCCCCCAAATCTTGTG 59.792 52.381 0.00 0.00 0.00 3.33
2378 2496 2.178580 GCATTCCCCCAAATCTTGTGA 58.821 47.619 0.00 0.00 0.00 3.58
2379 2497 2.167075 GCATTCCCCCAAATCTTGTGAG 59.833 50.000 0.00 0.00 0.00 3.51
2380 2498 2.603075 TTCCCCCAAATCTTGTGAGG 57.397 50.000 0.00 0.00 0.00 3.86
2381 2499 0.704076 TCCCCCAAATCTTGTGAGGG 59.296 55.000 0.00 0.00 39.29 4.30
2382 2500 0.409484 CCCCCAAATCTTGTGAGGGT 59.591 55.000 0.00 0.00 37.84 4.34
2383 2501 1.616994 CCCCCAAATCTTGTGAGGGTC 60.617 57.143 0.00 0.00 37.84 4.46
2384 2502 1.453155 CCCAAATCTTGTGAGGGTCG 58.547 55.000 0.00 0.00 34.75 4.79
2385 2503 1.271379 CCCAAATCTTGTGAGGGTCGT 60.271 52.381 0.00 0.00 34.75 4.34
2386 2504 2.504367 CCAAATCTTGTGAGGGTCGTT 58.496 47.619 0.00 0.00 0.00 3.85
2387 2505 2.484264 CCAAATCTTGTGAGGGTCGTTC 59.516 50.000 0.00 0.00 0.00 3.95
2388 2506 3.138304 CAAATCTTGTGAGGGTCGTTCA 58.862 45.455 0.00 0.00 0.00 3.18
2389 2507 3.703001 AATCTTGTGAGGGTCGTTCAT 57.297 42.857 0.00 0.00 0.00 2.57
2390 2508 4.819105 AATCTTGTGAGGGTCGTTCATA 57.181 40.909 0.00 0.00 0.00 2.15
2417 2535 4.589216 TTTCTGAAAGGAACATTGCAGG 57.411 40.909 7.24 0.00 0.00 4.85
2432 2550 0.385390 GCAGGTTTGTTGTGGTCCAG 59.615 55.000 0.00 0.00 0.00 3.86
2434 2552 0.755327 AGGTTTGTTGTGGTCCAGCC 60.755 55.000 0.00 0.00 37.90 4.85
2435 2553 1.358759 GTTTGTTGTGGTCCAGCCG 59.641 57.895 0.00 0.00 41.21 5.52
2463 2606 0.392193 AGAATTGAGGGTCGCTGCAG 60.392 55.000 10.11 10.11 0.00 4.41
2486 2629 0.105964 TGTGCCGCAAACAGTAGTCT 59.894 50.000 0.00 0.00 0.00 3.24
2593 2740 3.114065 GGAATGTCTCGACGGATAACAC 58.886 50.000 0.00 0.00 0.00 3.32
2594 2741 3.428452 GGAATGTCTCGACGGATAACACA 60.428 47.826 0.00 0.00 0.00 3.72
2595 2742 2.913777 TGTCTCGACGGATAACACAG 57.086 50.000 0.00 0.00 0.00 3.66
2597 2744 1.132643 GTCTCGACGGATAACACAGCT 59.867 52.381 0.00 0.00 0.00 4.24
2609 2756 3.802948 AACACAGCTCCGTAATCCTAG 57.197 47.619 0.00 0.00 0.00 3.02
2637 2784 4.260375 CCGATCCAAAGCTTCATTTACTCG 60.260 45.833 0.00 2.84 0.00 4.18
2641 2788 3.484229 CCAAAGCTTCATTTACTCGCTCG 60.484 47.826 0.00 0.00 0.00 5.03
2686 2845 6.487331 CAGTAATCACAGGTAGTAGGGACTAG 59.513 46.154 0.00 0.00 44.14 2.57
2708 2867 0.392706 TGAAACGCTCTGCTCTGGAA 59.607 50.000 0.00 0.00 0.00 3.53
2709 2868 1.074752 GAAACGCTCTGCTCTGGAAG 58.925 55.000 0.00 0.00 0.00 3.46
2710 2869 0.394565 AAACGCTCTGCTCTGGAAGT 59.605 50.000 0.00 0.00 33.76 3.01
2711 2870 0.037790 AACGCTCTGCTCTGGAAGTC 60.038 55.000 0.00 0.00 33.76 3.01
2712 2871 0.897863 ACGCTCTGCTCTGGAAGTCT 60.898 55.000 0.00 0.00 33.76 3.24
2713 2872 0.458197 CGCTCTGCTCTGGAAGTCTG 60.458 60.000 0.00 0.00 33.76 3.51
2714 2873 0.108233 GCTCTGCTCTGGAAGTCTGG 60.108 60.000 0.00 0.00 33.76 3.86
2715 2874 1.554836 CTCTGCTCTGGAAGTCTGGA 58.445 55.000 0.00 0.00 33.76 3.86
2723 2882 4.695396 CTCTGGAAGTCTGGATGAATGAG 58.305 47.826 0.00 0.00 33.76 2.90
2731 2890 0.322366 TGGATGAATGAGTGGCGCAA 60.322 50.000 10.83 0.00 0.00 4.85
2841 3016 1.557099 TGCTAGTCCGGTCAGATTGT 58.443 50.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.857037 CGACTTGTCGACTATCATTGACAA 59.143 41.667 17.92 8.03 46.30 3.18
3 4 4.082949 ACGACTTGTCGACTATCATTGACA 60.083 41.667 26.65 0.00 40.56 3.58
4 5 4.413087 ACGACTTGTCGACTATCATTGAC 58.587 43.478 26.65 0.00 36.85 3.18
5 6 4.696899 ACGACTTGTCGACTATCATTGA 57.303 40.909 26.65 0.00 36.85 2.57
6 7 4.621460 ACAACGACTTGTCGACTATCATTG 59.379 41.667 26.65 19.60 35.57 2.82
7 8 4.621460 CACAACGACTTGTCGACTATCATT 59.379 41.667 26.65 8.33 38.66 2.57
8 9 4.166523 CACAACGACTTGTCGACTATCAT 58.833 43.478 26.65 2.60 38.66 2.45
9 10 3.561503 CACAACGACTTGTCGACTATCA 58.438 45.455 26.65 0.00 38.66 2.15
10 11 2.341760 GCACAACGACTTGTCGACTATC 59.658 50.000 26.65 10.28 38.66 2.08
11 12 2.287970 TGCACAACGACTTGTCGACTAT 60.288 45.455 26.65 9.26 38.66 2.12
12 13 1.065851 TGCACAACGACTTGTCGACTA 59.934 47.619 26.65 8.49 38.66 2.59
13 14 0.179121 TGCACAACGACTTGTCGACT 60.179 50.000 26.65 12.20 38.66 4.18
14 15 0.859232 ATGCACAACGACTTGTCGAC 59.141 50.000 26.65 9.11 38.66 4.20
15 16 0.858583 CATGCACAACGACTTGTCGA 59.141 50.000 26.65 6.34 38.66 4.20
16 17 0.581529 ACATGCACAACGACTTGTCG 59.418 50.000 19.74 19.74 38.66 4.35
17 18 1.921573 GCACATGCACAACGACTTGTC 60.922 52.381 0.00 0.00 38.66 3.18
18 19 0.029300 GCACATGCACAACGACTTGT 59.971 50.000 0.00 0.00 41.61 3.16
19 20 0.661187 GGCACATGCACAACGACTTG 60.661 55.000 6.15 0.00 44.36 3.16
20 21 1.654220 GGCACATGCACAACGACTT 59.346 52.632 6.15 0.00 44.36 3.01
21 22 2.260869 GGGCACATGCACAACGACT 61.261 57.895 6.15 0.00 45.57 4.18
22 23 2.255252 GGGCACATGCACAACGAC 59.745 61.111 6.15 0.00 45.57 4.34
28 29 3.443045 CCTTCGGGGCACATGCAC 61.443 66.667 6.15 0.93 45.53 4.57
29 30 3.645660 TCCTTCGGGGCACATGCA 61.646 61.111 6.15 0.00 44.36 3.96
30 31 3.134127 GTCCTTCGGGGCACATGC 61.134 66.667 0.00 0.00 40.02 4.06
31 32 2.438434 GGTCCTTCGGGGCACATG 60.438 66.667 0.00 0.00 42.58 3.21
32 33 4.096003 CGGTCCTTCGGGGCACAT 62.096 66.667 0.00 0.00 42.58 3.21
34 35 4.754667 GTCGGTCCTTCGGGGCAC 62.755 72.222 0.00 0.00 42.58 5.01
38 39 3.659089 AATGCGTCGGTCCTTCGGG 62.659 63.158 0.00 0.00 0.00 5.14
39 40 2.125673 AATGCGTCGGTCCTTCGG 60.126 61.111 0.00 0.00 0.00 4.30
40 41 2.452813 CCAATGCGTCGGTCCTTCG 61.453 63.158 0.00 0.00 0.00 3.79
41 42 1.079405 TCCAATGCGTCGGTCCTTC 60.079 57.895 0.00 0.00 0.00 3.46
42 43 1.079127 CTCCAATGCGTCGGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
43 44 2.579201 CTCCAATGCGTCGGTCCT 59.421 61.111 0.00 0.00 0.00 3.85
44 45 3.195698 GCTCCAATGCGTCGGTCC 61.196 66.667 0.00 0.00 0.00 4.46
45 46 3.195698 GGCTCCAATGCGTCGGTC 61.196 66.667 0.00 0.00 0.00 4.79
46 47 1.966901 TATGGCTCCAATGCGTCGGT 61.967 55.000 0.00 0.00 0.00 4.69
47 48 1.224069 CTATGGCTCCAATGCGTCGG 61.224 60.000 0.00 0.00 0.00 4.79
48 49 0.530650 ACTATGGCTCCAATGCGTCG 60.531 55.000 0.00 0.00 0.00 5.12
49 50 1.221414 GACTATGGCTCCAATGCGTC 58.779 55.000 0.00 0.00 0.00 5.19
50 51 0.541392 TGACTATGGCTCCAATGCGT 59.459 50.000 0.00 0.00 0.00 5.24
51 52 1.802960 GATGACTATGGCTCCAATGCG 59.197 52.381 0.00 0.00 0.00 4.73
52 53 1.802960 CGATGACTATGGCTCCAATGC 59.197 52.381 0.00 0.00 0.00 3.56
53 54 3.391506 TCGATGACTATGGCTCCAATG 57.608 47.619 0.00 0.00 0.00 2.82
54 55 3.326006 ACATCGATGACTATGGCTCCAAT 59.674 43.478 31.33 0.77 0.00 3.16
55 56 2.700371 ACATCGATGACTATGGCTCCAA 59.300 45.455 31.33 0.00 0.00 3.53
56 57 2.319844 ACATCGATGACTATGGCTCCA 58.680 47.619 31.33 0.00 0.00 3.86
57 58 3.062763 CAACATCGATGACTATGGCTCC 58.937 50.000 31.33 0.00 0.00 4.70
58 59 3.982475 TCAACATCGATGACTATGGCTC 58.018 45.455 31.33 0.00 0.00 4.70
59 60 4.406648 TTCAACATCGATGACTATGGCT 57.593 40.909 31.33 3.59 0.00 4.75
60 61 4.153117 GGATTCAACATCGATGACTATGGC 59.847 45.833 31.33 13.75 0.00 4.40
61 62 5.545588 AGGATTCAACATCGATGACTATGG 58.454 41.667 31.33 7.10 0.00 2.74
62 63 8.593492 TTAAGGATTCAACATCGATGACTATG 57.407 34.615 31.33 21.29 0.00 2.23
63 64 9.613428 TTTTAAGGATTCAACATCGATGACTAT 57.387 29.630 31.33 17.21 0.00 2.12
64 65 9.613428 ATTTTAAGGATTCAACATCGATGACTA 57.387 29.630 31.33 12.65 0.00 2.59
65 66 7.921786 TTTTAAGGATTCAACATCGATGACT 57.078 32.000 31.33 14.94 0.00 3.41
66 67 7.584123 CGATTTTAAGGATTCAACATCGATGAC 59.416 37.037 31.33 13.70 0.00 3.06
67 68 7.494298 TCGATTTTAAGGATTCAACATCGATGA 59.506 33.333 31.33 9.77 32.88 2.92
68 69 7.630026 TCGATTTTAAGGATTCAACATCGATG 58.370 34.615 23.68 23.68 32.88 3.84
69 70 7.786178 TCGATTTTAAGGATTCAACATCGAT 57.214 32.000 0.00 0.00 32.88 3.59
70 71 7.786178 ATCGATTTTAAGGATTCAACATCGA 57.214 32.000 7.69 7.69 40.33 3.59
71 72 8.481132 GAATCGATTTTAAGGATTCAACATCG 57.519 34.615 12.81 0.00 43.38 3.84
78 79 6.629252 GCGTTCTGAATCGATTTTAAGGATTC 59.371 38.462 12.81 6.14 43.89 2.52
79 80 6.458342 GGCGTTCTGAATCGATTTTAAGGATT 60.458 38.462 12.81 0.00 33.34 3.01
80 81 5.007724 GGCGTTCTGAATCGATTTTAAGGAT 59.992 40.000 12.81 0.00 0.00 3.24
81 82 4.331717 GGCGTTCTGAATCGATTTTAAGGA 59.668 41.667 12.81 2.88 0.00 3.36
82 83 4.495844 GGGCGTTCTGAATCGATTTTAAGG 60.496 45.833 12.81 12.63 0.00 2.69
83 84 4.094294 TGGGCGTTCTGAATCGATTTTAAG 59.906 41.667 12.81 10.56 0.00 1.85
84 85 4.004314 TGGGCGTTCTGAATCGATTTTAA 58.996 39.130 12.81 4.53 0.00 1.52
85 86 3.601435 TGGGCGTTCTGAATCGATTTTA 58.399 40.909 12.81 4.08 0.00 1.52
86 87 2.432444 TGGGCGTTCTGAATCGATTTT 58.568 42.857 12.81 0.00 0.00 1.82
87 88 2.107950 TGGGCGTTCTGAATCGATTT 57.892 45.000 12.81 0.00 0.00 2.17
88 89 1.737793 GTTGGGCGTTCTGAATCGATT 59.262 47.619 11.20 11.20 0.00 3.34
89 90 1.338674 TGTTGGGCGTTCTGAATCGAT 60.339 47.619 13.75 0.00 0.00 3.59
90 91 0.034198 TGTTGGGCGTTCTGAATCGA 59.966 50.000 13.75 0.00 0.00 3.59
91 92 0.165944 GTGTTGGGCGTTCTGAATCG 59.834 55.000 0.00 0.93 0.00 3.34
92 93 0.521735 GGTGTTGGGCGTTCTGAATC 59.478 55.000 0.00 0.00 0.00 2.52
93 94 0.179004 TGGTGTTGGGCGTTCTGAAT 60.179 50.000 0.00 0.00 0.00 2.57
94 95 0.394488 TTGGTGTTGGGCGTTCTGAA 60.394 50.000 0.00 0.00 0.00 3.02
95 96 0.394488 TTTGGTGTTGGGCGTTCTGA 60.394 50.000 0.00 0.00 0.00 3.27
96 97 0.673437 ATTTGGTGTTGGGCGTTCTG 59.327 50.000 0.00 0.00 0.00 3.02
97 98 0.958822 GATTTGGTGTTGGGCGTTCT 59.041 50.000 0.00 0.00 0.00 3.01
98 99 0.958822 AGATTTGGTGTTGGGCGTTC 59.041 50.000 0.00 0.00 0.00 3.95
99 100 0.958822 GAGATTTGGTGTTGGGCGTT 59.041 50.000 0.00 0.00 0.00 4.84
100 101 1.234615 CGAGATTTGGTGTTGGGCGT 61.235 55.000 0.00 0.00 0.00 5.68
101 102 1.501741 CGAGATTTGGTGTTGGGCG 59.498 57.895 0.00 0.00 0.00 6.13
102 103 1.212751 GCGAGATTTGGTGTTGGGC 59.787 57.895 0.00 0.00 0.00 5.36
103 104 0.893270 TGGCGAGATTTGGTGTTGGG 60.893 55.000 0.00 0.00 0.00 4.12
104 105 1.176527 ATGGCGAGATTTGGTGTTGG 58.823 50.000 0.00 0.00 0.00 3.77
105 106 2.598589 CAATGGCGAGATTTGGTGTTG 58.401 47.619 0.00 0.00 0.00 3.33
106 107 1.067635 GCAATGGCGAGATTTGGTGTT 60.068 47.619 0.00 0.00 0.00 3.32
107 108 0.527565 GCAATGGCGAGATTTGGTGT 59.472 50.000 0.00 0.00 0.00 4.16
108 109 3.334078 GCAATGGCGAGATTTGGTG 57.666 52.632 0.00 0.00 0.00 4.17
125 126 1.082169 TTTCTTGTCGTGCATGCGC 60.082 52.632 21.37 21.37 39.24 6.09
126 127 0.725784 GGTTTCTTGTCGTGCATGCG 60.726 55.000 14.09 0.00 0.00 4.73
127 128 0.387239 GGGTTTCTTGTCGTGCATGC 60.387 55.000 11.82 11.82 0.00 4.06
128 129 1.238439 AGGGTTTCTTGTCGTGCATG 58.762 50.000 0.00 0.00 0.00 4.06
129 130 2.812011 GTTAGGGTTTCTTGTCGTGCAT 59.188 45.455 0.00 0.00 0.00 3.96
130 131 2.215196 GTTAGGGTTTCTTGTCGTGCA 58.785 47.619 0.00 0.00 0.00 4.57
131 132 2.215196 TGTTAGGGTTTCTTGTCGTGC 58.785 47.619 0.00 0.00 0.00 5.34
132 133 3.623960 TGTTGTTAGGGTTTCTTGTCGTG 59.376 43.478 0.00 0.00 0.00 4.35
133 134 3.876341 TGTTGTTAGGGTTTCTTGTCGT 58.124 40.909 0.00 0.00 0.00 4.34
134 135 4.320202 CCATGTTGTTAGGGTTTCTTGTCG 60.320 45.833 0.00 0.00 0.00 4.35
135 136 4.558697 GCCATGTTGTTAGGGTTTCTTGTC 60.559 45.833 0.00 0.00 0.00 3.18
136 137 3.320826 GCCATGTTGTTAGGGTTTCTTGT 59.679 43.478 0.00 0.00 0.00 3.16
137 138 3.320541 TGCCATGTTGTTAGGGTTTCTTG 59.679 43.478 0.00 0.00 0.00 3.02
138 139 3.571590 TGCCATGTTGTTAGGGTTTCTT 58.428 40.909 0.00 0.00 0.00 2.52
139 140 3.157087 CTGCCATGTTGTTAGGGTTTCT 58.843 45.455 0.00 0.00 0.00 2.52
140 141 3.153919 TCTGCCATGTTGTTAGGGTTTC 58.846 45.455 0.00 0.00 0.00 2.78
141 142 3.237268 TCTGCCATGTTGTTAGGGTTT 57.763 42.857 0.00 0.00 0.00 3.27
142 143 2.969821 TCTGCCATGTTGTTAGGGTT 57.030 45.000 0.00 0.00 0.00 4.11
143 144 2.621407 CCATCTGCCATGTTGTTAGGGT 60.621 50.000 0.00 0.00 0.00 4.34
144 145 2.026641 CCATCTGCCATGTTGTTAGGG 58.973 52.381 0.00 0.00 0.00 3.53
145 146 1.406539 GCCATCTGCCATGTTGTTAGG 59.593 52.381 0.00 0.00 0.00 2.69
146 147 1.064505 CGCCATCTGCCATGTTGTTAG 59.935 52.381 0.00 0.00 36.24 2.34
147 148 1.093972 CGCCATCTGCCATGTTGTTA 58.906 50.000 0.00 0.00 36.24 2.41
148 149 1.597797 CCGCCATCTGCCATGTTGTT 61.598 55.000 0.00 0.00 36.24 2.83
149 150 2.048023 CCGCCATCTGCCATGTTGT 61.048 57.895 0.00 0.00 36.24 3.32
150 151 2.777972 CCCGCCATCTGCCATGTTG 61.778 63.158 0.00 0.00 36.24 3.33
151 152 2.440796 CCCGCCATCTGCCATGTT 60.441 61.111 0.00 0.00 36.24 2.71
152 153 2.288642 ATTCCCGCCATCTGCCATGT 62.289 55.000 0.00 0.00 36.24 3.21
153 154 1.521450 GATTCCCGCCATCTGCCATG 61.521 60.000 0.00 0.00 36.24 3.66
154 155 1.228367 GATTCCCGCCATCTGCCAT 60.228 57.895 0.00 0.00 36.24 4.40
155 156 2.192979 GATTCCCGCCATCTGCCA 59.807 61.111 0.00 0.00 36.24 4.92
156 157 1.453745 TTGATTCCCGCCATCTGCC 60.454 57.895 0.00 0.00 36.24 4.85
157 158 1.031571 TGTTGATTCCCGCCATCTGC 61.032 55.000 0.00 0.00 0.00 4.26
158 159 1.683943 ATGTTGATTCCCGCCATCTG 58.316 50.000 0.00 0.00 0.00 2.90
159 160 2.026641 CAATGTTGATTCCCGCCATCT 58.973 47.619 0.00 0.00 0.00 2.90
160 161 2.023673 TCAATGTTGATTCCCGCCATC 58.976 47.619 0.00 0.00 31.01 3.51
161 162 2.142356 TCAATGTTGATTCCCGCCAT 57.858 45.000 0.00 0.00 31.01 4.40
162 163 1.916506 TTCAATGTTGATTCCCGCCA 58.083 45.000 0.00 0.00 37.00 5.69
163 164 2.689983 AGATTCAATGTTGATTCCCGCC 59.310 45.455 11.81 0.00 37.96 6.13
164 165 4.376340 AAGATTCAATGTTGATTCCCGC 57.624 40.909 11.81 0.00 37.96 6.13
165 166 5.713025 ACAAAGATTCAATGTTGATTCCCG 58.287 37.500 11.81 5.89 37.96 5.14
166 167 5.801947 CGACAAAGATTCAATGTTGATTCCC 59.198 40.000 11.81 0.00 37.96 3.97
167 168 6.611381 TCGACAAAGATTCAATGTTGATTCC 58.389 36.000 11.81 0.03 37.96 3.01
168 169 7.301054 ACTCGACAAAGATTCAATGTTGATTC 58.699 34.615 10.48 8.76 36.98 2.52
169 170 7.206981 ACTCGACAAAGATTCAATGTTGATT 57.793 32.000 10.48 4.95 36.98 2.57
170 171 6.128172 GGACTCGACAAAGATTCAATGTTGAT 60.128 38.462 10.48 4.32 36.98 2.57
171 172 5.179368 GGACTCGACAAAGATTCAATGTTGA 59.821 40.000 9.91 9.91 36.36 3.18
172 173 5.049474 TGGACTCGACAAAGATTCAATGTTG 60.049 40.000 3.78 3.78 0.00 3.33
173 174 5.063204 TGGACTCGACAAAGATTCAATGTT 58.937 37.500 0.00 0.00 0.00 2.71
174 175 4.641396 TGGACTCGACAAAGATTCAATGT 58.359 39.130 0.00 0.00 0.00 2.71
175 176 5.583854 AGATGGACTCGACAAAGATTCAATG 59.416 40.000 0.00 0.00 0.00 2.82
176 177 5.738909 AGATGGACTCGACAAAGATTCAAT 58.261 37.500 0.00 0.00 0.00 2.57
177 178 5.152623 AGATGGACTCGACAAAGATTCAA 57.847 39.130 0.00 0.00 0.00 2.69
178 179 4.382040 GGAGATGGACTCGACAAAGATTCA 60.382 45.833 0.00 0.00 45.76 2.57
179 180 4.116238 GGAGATGGACTCGACAAAGATTC 58.884 47.826 0.00 0.00 45.76 2.52
180 181 3.515502 TGGAGATGGACTCGACAAAGATT 59.484 43.478 0.00 0.00 45.76 2.40
181 182 3.099905 TGGAGATGGACTCGACAAAGAT 58.900 45.455 0.00 0.00 45.76 2.40
182 183 2.525368 TGGAGATGGACTCGACAAAGA 58.475 47.619 0.00 0.00 45.76 2.52
183 184 3.118992 TCATGGAGATGGACTCGACAAAG 60.119 47.826 0.00 0.00 45.76 2.77
184 185 2.831526 TCATGGAGATGGACTCGACAAA 59.168 45.455 0.00 0.00 45.76 2.83
185 186 2.456577 TCATGGAGATGGACTCGACAA 58.543 47.619 0.00 0.00 45.76 3.18
186 187 2.143876 TCATGGAGATGGACTCGACA 57.856 50.000 0.00 0.00 45.76 4.35
187 188 2.482142 GGTTCATGGAGATGGACTCGAC 60.482 54.545 0.00 0.00 45.76 4.20
188 189 1.757118 GGTTCATGGAGATGGACTCGA 59.243 52.381 0.00 0.00 45.76 4.04
189 190 1.536922 CGGTTCATGGAGATGGACTCG 60.537 57.143 0.00 0.00 45.76 4.18
190 191 1.757118 TCGGTTCATGGAGATGGACTC 59.243 52.381 0.00 0.00 38.10 3.36
191 192 1.482593 GTCGGTTCATGGAGATGGACT 59.517 52.381 0.00 0.00 38.10 3.85
192 193 1.482593 AGTCGGTTCATGGAGATGGAC 59.517 52.381 0.00 0.00 37.36 4.02
193 194 1.757118 GAGTCGGTTCATGGAGATGGA 59.243 52.381 0.00 0.00 0.00 3.41
194 195 1.759445 AGAGTCGGTTCATGGAGATGG 59.241 52.381 0.00 0.00 0.00 3.51
195 196 3.885901 TCTAGAGTCGGTTCATGGAGATG 59.114 47.826 0.00 0.00 0.00 2.90
196 197 4.171878 TCTAGAGTCGGTTCATGGAGAT 57.828 45.455 0.00 0.00 0.00 2.75
197 198 3.646736 TCTAGAGTCGGTTCATGGAGA 57.353 47.619 0.00 0.00 0.00 3.71
198 199 4.399618 TCTTTCTAGAGTCGGTTCATGGAG 59.600 45.833 0.00 0.00 0.00 3.86
199 200 4.341487 TCTTTCTAGAGTCGGTTCATGGA 58.659 43.478 0.00 0.00 0.00 3.41
200 201 4.720649 TCTTTCTAGAGTCGGTTCATGG 57.279 45.455 0.00 0.00 0.00 3.66
201 202 6.142818 AGATCTTTCTAGAGTCGGTTCATG 57.857 41.667 0.00 0.00 32.92 3.07
202 203 6.378564 TCAAGATCTTTCTAGAGTCGGTTCAT 59.621 38.462 4.86 0.00 32.92 2.57
203 204 5.710567 TCAAGATCTTTCTAGAGTCGGTTCA 59.289 40.000 4.86 0.00 32.92 3.18
204 205 6.127842 ACTCAAGATCTTTCTAGAGTCGGTTC 60.128 42.308 16.52 0.00 31.19 3.62
205 206 5.712917 ACTCAAGATCTTTCTAGAGTCGGTT 59.287 40.000 16.52 0.00 31.19 4.44
206 207 5.258051 ACTCAAGATCTTTCTAGAGTCGGT 58.742 41.667 16.52 0.68 31.19 4.69
207 208 5.816919 GACTCAAGATCTTTCTAGAGTCGG 58.183 45.833 25.71 6.79 41.47 4.79
209 210 6.601613 TCTGGACTCAAGATCTTTCTAGAGTC 59.398 42.308 28.86 28.86 46.81 3.36
210 211 6.489603 TCTGGACTCAAGATCTTTCTAGAGT 58.510 40.000 20.37 20.37 38.89 3.24
211 212 7.339212 TCTTCTGGACTCAAGATCTTTCTAGAG 59.661 40.741 16.56 16.05 32.92 2.43
212 213 7.122055 GTCTTCTGGACTCAAGATCTTTCTAGA 59.878 40.741 14.40 14.40 41.46 2.43
213 214 7.257722 GTCTTCTGGACTCAAGATCTTTCTAG 58.742 42.308 4.86 8.78 41.46 2.43
214 215 6.153680 GGTCTTCTGGACTCAAGATCTTTCTA 59.846 42.308 4.86 0.00 43.97 2.10
215 216 5.046663 GGTCTTCTGGACTCAAGATCTTTCT 60.047 44.000 4.86 0.00 43.97 2.52
216 217 5.175127 GGTCTTCTGGACTCAAGATCTTTC 58.825 45.833 4.86 0.83 43.97 2.62
217 218 4.594920 TGGTCTTCTGGACTCAAGATCTTT 59.405 41.667 4.86 0.00 43.97 2.52
218 219 4.163427 TGGTCTTCTGGACTCAAGATCTT 58.837 43.478 0.88 0.88 43.97 2.40
219 220 3.768757 CTGGTCTTCTGGACTCAAGATCT 59.231 47.826 0.00 0.00 43.97 2.75
220 221 3.678529 GCTGGTCTTCTGGACTCAAGATC 60.679 52.174 0.00 0.00 43.97 2.75
221 222 2.235898 GCTGGTCTTCTGGACTCAAGAT 59.764 50.000 0.00 0.00 43.97 2.40
222 223 1.620819 GCTGGTCTTCTGGACTCAAGA 59.379 52.381 0.00 0.00 43.97 3.02
223 224 1.622811 AGCTGGTCTTCTGGACTCAAG 59.377 52.381 0.00 0.00 43.97 3.02
224 225 1.620819 GAGCTGGTCTTCTGGACTCAA 59.379 52.381 0.00 0.00 43.97 3.02
225 226 1.261480 GAGCTGGTCTTCTGGACTCA 58.739 55.000 0.00 0.00 43.97 3.41
226 227 1.261480 TGAGCTGGTCTTCTGGACTC 58.739 55.000 8.47 0.00 43.97 3.36
227 228 1.722034 TTGAGCTGGTCTTCTGGACT 58.278 50.000 8.47 0.00 43.97 3.85
228 229 2.037772 TCTTTGAGCTGGTCTTCTGGAC 59.962 50.000 8.47 0.00 43.79 4.02
229 230 2.329267 TCTTTGAGCTGGTCTTCTGGA 58.671 47.619 8.47 0.00 0.00 3.86
230 231 2.847327 TCTTTGAGCTGGTCTTCTGG 57.153 50.000 8.47 0.00 0.00 3.86
231 232 6.606768 GTTTTATCTTTGAGCTGGTCTTCTG 58.393 40.000 8.47 0.00 0.00 3.02
232 233 5.409826 CGTTTTATCTTTGAGCTGGTCTTCT 59.590 40.000 8.47 0.00 0.00 2.85
233 234 5.622378 CGTTTTATCTTTGAGCTGGTCTTC 58.378 41.667 8.47 0.00 0.00 2.87
234 235 4.083271 GCGTTTTATCTTTGAGCTGGTCTT 60.083 41.667 8.47 0.00 0.00 3.01
235 236 3.437049 GCGTTTTATCTTTGAGCTGGTCT 59.563 43.478 8.47 0.00 0.00 3.85
236 237 3.426292 GGCGTTTTATCTTTGAGCTGGTC 60.426 47.826 0.00 0.00 0.00 4.02
237 238 2.488153 GGCGTTTTATCTTTGAGCTGGT 59.512 45.455 0.00 0.00 0.00 4.00
238 239 2.476185 CGGCGTTTTATCTTTGAGCTGG 60.476 50.000 0.00 0.00 0.00 4.85
239 240 2.774007 CGGCGTTTTATCTTTGAGCTG 58.226 47.619 0.00 0.00 0.00 4.24
240 241 1.130561 GCGGCGTTTTATCTTTGAGCT 59.869 47.619 9.37 0.00 0.00 4.09
241 242 1.535088 GCGGCGTTTTATCTTTGAGC 58.465 50.000 9.37 0.00 0.00 4.26
242 243 1.466950 TGGCGGCGTTTTATCTTTGAG 59.533 47.619 9.37 0.00 0.00 3.02
243 244 1.524848 TGGCGGCGTTTTATCTTTGA 58.475 45.000 9.37 0.00 0.00 2.69
244 245 2.559998 ATGGCGGCGTTTTATCTTTG 57.440 45.000 9.37 0.00 0.00 2.77
245 246 2.490115 TCAATGGCGGCGTTTTATCTTT 59.510 40.909 14.58 0.00 0.00 2.52
246 247 2.088423 TCAATGGCGGCGTTTTATCTT 58.912 42.857 14.58 0.00 0.00 2.40
247 248 1.400494 GTCAATGGCGGCGTTTTATCT 59.600 47.619 14.58 0.00 0.00 1.98
248 249 1.533129 GGTCAATGGCGGCGTTTTATC 60.533 52.381 14.58 2.07 0.00 1.75
249 250 0.454196 GGTCAATGGCGGCGTTTTAT 59.546 50.000 14.58 0.00 0.00 1.40
250 251 1.587933 GGGTCAATGGCGGCGTTTTA 61.588 55.000 14.58 2.53 0.00 1.52
251 252 2.648454 GGTCAATGGCGGCGTTTT 59.352 55.556 14.58 0.00 0.00 2.43
252 253 3.370231 GGGTCAATGGCGGCGTTT 61.370 61.111 14.58 2.03 0.00 3.60
253 254 4.652131 TGGGTCAATGGCGGCGTT 62.652 61.111 11.16 11.16 0.00 4.84
254 255 4.652131 TTGGGTCAATGGCGGCGT 62.652 61.111 9.37 0.00 0.00 5.68
255 256 3.814268 CTTGGGTCAATGGCGGCG 61.814 66.667 0.51 0.51 0.00 6.46
256 257 4.133796 GCTTGGGTCAATGGCGGC 62.134 66.667 0.00 0.00 0.00 6.53
257 258 2.676121 TGCTTGGGTCAATGGCGG 60.676 61.111 0.00 0.00 0.00 6.13
258 259 1.926511 GAGTGCTTGGGTCAATGGCG 61.927 60.000 0.00 0.00 0.00 5.69
259 260 0.610232 AGAGTGCTTGGGTCAATGGC 60.610 55.000 0.00 0.00 0.00 4.40
260 261 1.457346 GAGAGTGCTTGGGTCAATGG 58.543 55.000 0.00 0.00 0.00 3.16
261 262 1.004044 AGGAGAGTGCTTGGGTCAATG 59.996 52.381 0.00 0.00 0.00 2.82
262 263 1.366319 AGGAGAGTGCTTGGGTCAAT 58.634 50.000 0.00 0.00 0.00 2.57
263 264 1.140312 AAGGAGAGTGCTTGGGTCAA 58.860 50.000 0.00 0.00 0.00 3.18
264 265 0.397941 CAAGGAGAGTGCTTGGGTCA 59.602 55.000 0.51 0.00 41.35 4.02
265 266 0.687354 TCAAGGAGAGTGCTTGGGTC 59.313 55.000 8.14 0.00 44.54 4.46
266 267 0.689623 CTCAAGGAGAGTGCTTGGGT 59.310 55.000 8.14 0.00 44.54 4.51
267 268 0.979665 TCTCAAGGAGAGTGCTTGGG 59.020 55.000 8.14 5.13 46.15 4.12
277 278 5.308825 TGGCTTTTTAGTTCTCTCAAGGAG 58.691 41.667 0.00 0.00 43.12 3.69
278 279 5.304686 TGGCTTTTTAGTTCTCTCAAGGA 57.695 39.130 0.00 0.00 0.00 3.36
279 280 7.174946 TGTTATGGCTTTTTAGTTCTCTCAAGG 59.825 37.037 0.00 0.00 0.00 3.61
280 281 8.017946 GTGTTATGGCTTTTTAGTTCTCTCAAG 58.982 37.037 0.00 0.00 0.00 3.02
281 282 7.500892 TGTGTTATGGCTTTTTAGTTCTCTCAA 59.499 33.333 0.00 0.00 0.00 3.02
282 283 6.995686 TGTGTTATGGCTTTTTAGTTCTCTCA 59.004 34.615 0.00 0.00 0.00 3.27
283 284 7.435068 TGTGTTATGGCTTTTTAGTTCTCTC 57.565 36.000 0.00 0.00 0.00 3.20
284 285 7.817418 TTGTGTTATGGCTTTTTAGTTCTCT 57.183 32.000 0.00 0.00 0.00 3.10
285 286 8.135529 AGTTTGTGTTATGGCTTTTTAGTTCTC 58.864 33.333 0.00 0.00 0.00 2.87
286 287 8.007405 AGTTTGTGTTATGGCTTTTTAGTTCT 57.993 30.769 0.00 0.00 0.00 3.01
287 288 9.908152 ATAGTTTGTGTTATGGCTTTTTAGTTC 57.092 29.630 0.00 0.00 0.00 3.01
292 293 9.908152 GACTAATAGTTTGTGTTATGGCTTTTT 57.092 29.630 0.00 0.00 0.00 1.94
293 294 8.234546 CGACTAATAGTTTGTGTTATGGCTTTT 58.765 33.333 0.00 0.00 0.00 2.27
294 295 7.604927 TCGACTAATAGTTTGTGTTATGGCTTT 59.395 33.333 0.00 0.00 0.00 3.51
295 296 7.101054 TCGACTAATAGTTTGTGTTATGGCTT 58.899 34.615 0.00 0.00 0.00 4.35
296 297 6.636705 TCGACTAATAGTTTGTGTTATGGCT 58.363 36.000 0.00 0.00 0.00 4.75
297 298 6.897259 TCGACTAATAGTTTGTGTTATGGC 57.103 37.500 0.00 0.00 0.00 4.40
298 299 8.475331 ACTTCGACTAATAGTTTGTGTTATGG 57.525 34.615 0.00 0.00 0.00 2.74
299 300 8.311822 CGACTTCGACTAATAGTTTGTGTTATG 58.688 37.037 0.00 0.00 43.02 1.90
300 301 8.239314 TCGACTTCGACTAATAGTTTGTGTTAT 58.761 33.333 0.00 0.00 44.22 1.89
301 302 7.584108 TCGACTTCGACTAATAGTTTGTGTTA 58.416 34.615 0.00 0.00 44.22 2.41
302 303 6.441274 TCGACTTCGACTAATAGTTTGTGTT 58.559 36.000 0.00 0.00 44.22 3.32
303 304 6.005583 TCGACTTCGACTAATAGTTTGTGT 57.994 37.500 0.00 0.00 44.22 3.72
304 305 6.084925 ACTCGACTTCGACTAATAGTTTGTG 58.915 40.000 0.00 0.00 44.22 3.33
305 306 6.149142 AGACTCGACTTCGACTAATAGTTTGT 59.851 38.462 0.00 0.00 44.22 2.83
306 307 6.544622 AGACTCGACTTCGACTAATAGTTTG 58.455 40.000 0.00 0.00 44.22 2.93
307 308 6.740411 AGACTCGACTTCGACTAATAGTTT 57.260 37.500 0.00 0.00 44.22 2.66
308 309 6.403418 CCAAGACTCGACTTCGACTAATAGTT 60.403 42.308 0.00 0.00 44.22 2.24
309 310 5.064962 CCAAGACTCGACTTCGACTAATAGT 59.935 44.000 0.00 0.00 44.22 2.12
310 311 5.503498 CCAAGACTCGACTTCGACTAATAG 58.497 45.833 0.00 0.00 44.22 1.73
311 312 4.334759 CCCAAGACTCGACTTCGACTAATA 59.665 45.833 0.00 0.00 44.22 0.98
312 313 3.128938 CCCAAGACTCGACTTCGACTAAT 59.871 47.826 0.00 0.00 44.22 1.73
313 314 2.486982 CCCAAGACTCGACTTCGACTAA 59.513 50.000 0.00 0.00 44.22 2.24
314 315 2.082231 CCCAAGACTCGACTTCGACTA 58.918 52.381 0.00 0.00 44.22 2.59
315 316 0.882474 CCCAAGACTCGACTTCGACT 59.118 55.000 0.00 0.00 44.22 4.18
316 317 0.109226 CCCCAAGACTCGACTTCGAC 60.109 60.000 0.00 0.00 44.22 4.20
318 319 0.818296 ATCCCCAAGACTCGACTTCG 59.182 55.000 0.00 0.00 41.45 3.79
319 320 2.498078 AGAATCCCCAAGACTCGACTTC 59.502 50.000 0.00 0.00 0.00 3.01
320 321 2.498078 GAGAATCCCCAAGACTCGACTT 59.502 50.000 0.00 0.00 0.00 3.01
321 322 2.104170 GAGAATCCCCAAGACTCGACT 58.896 52.381 0.00 0.00 0.00 4.18
322 323 2.588027 GAGAATCCCCAAGACTCGAC 57.412 55.000 0.00 0.00 0.00 4.20
335 336 0.179936 CCAGTGCCAGGAGGAGAATC 59.820 60.000 0.00 0.00 36.89 2.52
336 337 1.919600 GCCAGTGCCAGGAGGAGAAT 61.920 60.000 0.00 0.00 36.89 2.40
337 338 2.596851 GCCAGTGCCAGGAGGAGAA 61.597 63.158 0.00 0.00 36.89 2.87
338 339 3.005539 GCCAGTGCCAGGAGGAGA 61.006 66.667 0.00 0.00 36.89 3.71
357 358 0.099436 CTTTTGTATGCCGCTCCAGC 59.901 55.000 0.00 0.00 37.78 4.85
358 359 0.734889 CCTTTTGTATGCCGCTCCAG 59.265 55.000 0.00 0.00 0.00 3.86
359 360 0.679640 CCCTTTTGTATGCCGCTCCA 60.680 55.000 0.00 0.00 0.00 3.86
360 361 0.393808 TCCCTTTTGTATGCCGCTCC 60.394 55.000 0.00 0.00 0.00 4.70
361 362 1.017387 CTCCCTTTTGTATGCCGCTC 58.983 55.000 0.00 0.00 0.00 5.03
362 363 0.394352 CCTCCCTTTTGTATGCCGCT 60.394 55.000 0.00 0.00 0.00 5.52
363 364 2.004808 GCCTCCCTTTTGTATGCCGC 62.005 60.000 0.00 0.00 0.00 6.53
364 365 0.679640 TGCCTCCCTTTTGTATGCCG 60.680 55.000 0.00 0.00 0.00 5.69
365 366 1.555967 TTGCCTCCCTTTTGTATGCC 58.444 50.000 0.00 0.00 0.00 4.40
366 367 3.430790 GGATTTGCCTCCCTTTTGTATGC 60.431 47.826 0.00 0.00 0.00 3.14
367 368 3.768757 TGGATTTGCCTCCCTTTTGTATG 59.231 43.478 0.00 0.00 37.63 2.39
368 369 4.059773 TGGATTTGCCTCCCTTTTGTAT 57.940 40.909 0.00 0.00 37.63 2.29
369 370 3.534357 TGGATTTGCCTCCCTTTTGTA 57.466 42.857 0.00 0.00 37.63 2.41
370 371 2.397044 TGGATTTGCCTCCCTTTTGT 57.603 45.000 0.00 0.00 37.63 2.83
371 372 3.385755 CCTATGGATTTGCCTCCCTTTTG 59.614 47.826 0.00 0.00 37.63 2.44
372 373 3.646534 CCTATGGATTTGCCTCCCTTTT 58.353 45.455 0.00 0.00 37.63 2.27
373 374 2.690936 GCCTATGGATTTGCCTCCCTTT 60.691 50.000 0.00 0.00 37.63 3.11
374 375 1.133356 GCCTATGGATTTGCCTCCCTT 60.133 52.381 0.00 0.00 37.63 3.95
375 376 0.480252 GCCTATGGATTTGCCTCCCT 59.520 55.000 0.00 0.00 37.63 4.20
376 377 0.480252 AGCCTATGGATTTGCCTCCC 59.520 55.000 0.00 0.00 37.63 4.30
377 378 2.371658 AAGCCTATGGATTTGCCTCC 57.628 50.000 0.00 0.00 37.63 4.30
378 379 3.686726 CGATAAGCCTATGGATTTGCCTC 59.313 47.826 0.00 0.00 37.63 4.70
379 380 3.327757 TCGATAAGCCTATGGATTTGCCT 59.672 43.478 0.00 0.00 37.63 4.75
380 381 3.437049 GTCGATAAGCCTATGGATTTGCC 59.563 47.826 0.00 0.00 31.96 4.52
381 382 3.123621 CGTCGATAAGCCTATGGATTTGC 59.876 47.826 0.00 0.00 31.96 3.68
382 383 4.556233 TCGTCGATAAGCCTATGGATTTG 58.444 43.478 0.00 0.00 31.96 2.32
383 384 4.866508 TCGTCGATAAGCCTATGGATTT 57.133 40.909 0.00 0.00 31.96 2.17
384 385 4.866508 TTCGTCGATAAGCCTATGGATT 57.133 40.909 0.00 0.00 34.82 3.01
385 386 4.810790 CTTTCGTCGATAAGCCTATGGAT 58.189 43.478 0.00 0.00 0.00 3.41
386 387 3.552273 GCTTTCGTCGATAAGCCTATGGA 60.552 47.826 21.44 0.00 40.61 3.41
387 388 2.731976 GCTTTCGTCGATAAGCCTATGG 59.268 50.000 21.44 0.00 40.61 2.74
393 394 3.301706 CTCTAGGCTTTCGTCGATAAGC 58.698 50.000 22.81 22.81 44.62 3.09
394 395 3.304794 CCCTCTAGGCTTTCGTCGATAAG 60.305 52.174 0.00 4.46 0.00 1.73
395 396 2.621998 CCCTCTAGGCTTTCGTCGATAA 59.378 50.000 0.00 0.00 0.00 1.75
396 397 2.158711 TCCCTCTAGGCTTTCGTCGATA 60.159 50.000 0.00 0.00 34.51 2.92
397 398 1.033574 CCCTCTAGGCTTTCGTCGAT 58.966 55.000 0.00 0.00 0.00 3.59
398 399 0.034767 TCCCTCTAGGCTTTCGTCGA 60.035 55.000 0.00 0.00 34.51 4.20
399 400 0.815734 TTCCCTCTAGGCTTTCGTCG 59.184 55.000 0.00 0.00 34.51 5.12
400 401 1.469423 CGTTCCCTCTAGGCTTTCGTC 60.469 57.143 0.00 0.00 34.51 4.20
401 402 0.531200 CGTTCCCTCTAGGCTTTCGT 59.469 55.000 0.00 0.00 34.51 3.85
402 403 0.815734 TCGTTCCCTCTAGGCTTTCG 59.184 55.000 0.00 0.00 34.51 3.46
403 404 2.234168 AGTTCGTTCCCTCTAGGCTTTC 59.766 50.000 0.00 0.00 34.51 2.62
404 405 2.234168 GAGTTCGTTCCCTCTAGGCTTT 59.766 50.000 0.00 0.00 34.51 3.51
405 406 1.826096 GAGTTCGTTCCCTCTAGGCTT 59.174 52.381 0.00 0.00 34.51 4.35
406 407 1.006162 AGAGTTCGTTCCCTCTAGGCT 59.994 52.381 0.00 0.00 36.30 4.58
407 408 1.476477 AGAGTTCGTTCCCTCTAGGC 58.524 55.000 0.00 0.00 36.30 3.93
408 409 3.258622 ACAAAGAGTTCGTTCCCTCTAGG 59.741 47.826 0.00 0.00 37.06 3.02
414 415 3.995048 CCTAAGACAAAGAGTTCGTTCCC 59.005 47.826 0.00 0.00 0.00 3.97
437 438 3.785859 CCTCTAGCGCAAGGGGCA 61.786 66.667 11.47 0.00 44.06 5.36
447 448 0.729690 CCTTTTGCTTCGCCTCTAGC 59.270 55.000 0.00 0.00 37.89 3.42
448 449 0.729690 GCCTTTTGCTTCGCCTCTAG 59.270 55.000 0.00 0.00 36.87 2.43
449 450 2.854522 GCCTTTTGCTTCGCCTCTA 58.145 52.632 0.00 0.00 36.87 2.43
467 469 0.748450 TATTTCGGCCCGAGGTACAG 59.252 55.000 5.73 0.00 37.14 2.74
474 476 1.452470 GCCCTTTATTTCGGCCCGA 60.452 57.895 0.00 0.00 36.63 5.14
475 477 1.106944 ATGCCCTTTATTTCGGCCCG 61.107 55.000 0.00 0.00 42.29 6.13
479 481 9.927668 AAAATAATATCATGCCCTTTATTTCGG 57.072 29.630 12.04 0.00 33.57 4.30
504 506 9.224267 CTTCTTAAGTCATTGGAGATGAGAAAA 57.776 33.333 1.63 0.00 0.00 2.29
522 526 5.556355 TGCATCATTCTGCACTTCTTAAG 57.444 39.130 0.00 0.00 46.76 1.85
534 538 6.931838 ACACATCAAAGAATTGCATCATTCT 58.068 32.000 7.67 7.67 38.65 2.40
543 555 6.146510 CCCATGTCAAACACATCAAAGAATTG 59.853 38.462 0.00 0.00 44.60 2.32
557 569 3.820467 TCATGTTCACTCCCATGTCAAAC 59.180 43.478 0.00 0.00 39.53 2.93
560 572 3.411446 GTTCATGTTCACTCCCATGTCA 58.589 45.455 0.00 0.00 39.53 3.58
612 626 1.134401 CCGCCCAAAGAAGAGCAGATA 60.134 52.381 0.00 0.00 0.00 1.98
617 631 0.889186 TCAACCGCCCAAAGAAGAGC 60.889 55.000 0.00 0.00 0.00 4.09
618 632 1.740025 GATCAACCGCCCAAAGAAGAG 59.260 52.381 0.00 0.00 0.00 2.85
635 649 2.061773 CCCGTAATCGCTCATGTGATC 58.938 52.381 0.00 0.00 42.00 2.92
645 659 2.538132 GCATGTTTACACCCGTAATCGC 60.538 50.000 0.00 0.00 37.44 4.58
706 720 2.028567 TGTGATGTGTCATTACCTGCGA 60.029 45.455 0.00 0.00 36.60 5.10
707 721 2.094258 GTGTGATGTGTCATTACCTGCG 59.906 50.000 3.04 0.00 36.60 5.18
712 726 2.415168 CGGGTGTGTGATGTGTCATTAC 59.585 50.000 0.00 0.00 36.60 1.89
725 739 2.923035 ACTGCTAGCCGGGTGTGT 60.923 61.111 18.40 6.62 0.00 3.72
735 749 0.798771 GACGCCGTTCAGACTGCTAG 60.799 60.000 0.00 0.00 34.28 3.42
774 788 5.103982 GGGAATTGGGAATGGAATGGATTTT 60.104 40.000 0.00 0.00 0.00 1.82
824 842 4.362279 GTCGTGTGGCTTTATATAACCGA 58.638 43.478 0.00 0.00 0.00 4.69
869 897 1.274728 AGCTGTGGAGTGTGAGATGTC 59.725 52.381 0.00 0.00 0.00 3.06
886 914 4.081420 AGTCTTGTTGGTGATCGATTAGCT 60.081 41.667 18.58 0.00 0.00 3.32
894 922 1.079503 GGCGAGTCTTGTTGGTGATC 58.920 55.000 0.00 0.00 0.00 2.92
994 1022 2.190313 GCTGGCGTCCATGGATGA 59.810 61.111 33.81 15.56 33.22 2.92
1060 1088 1.001503 AGAGCAGGAGGGAGGACAG 59.998 63.158 0.00 0.00 0.00 3.51
1146 1174 2.045242 TAGACGCTGGAGCCGAGT 60.045 61.111 0.00 0.00 37.91 4.18
1248 1282 0.672401 CTGGAAAGGGAAGCGCGTAA 60.672 55.000 8.43 0.00 0.00 3.18
1779 1819 2.257371 CACTCGAAGTCCGCCGAA 59.743 61.111 0.00 0.00 38.37 4.30
1780 1820 4.415332 GCACTCGAAGTCCGCCGA 62.415 66.667 0.00 0.00 38.37 5.54
1861 1901 1.380785 TAGTCCTACTGGCCGGTGG 60.381 63.158 28.18 24.39 0.00 4.61
1862 1902 0.395311 TCTAGTCCTACTGGCCGGTG 60.395 60.000 28.18 16.32 0.00 4.94
1863 1903 0.395448 GTCTAGTCCTACTGGCCGGT 60.395 60.000 23.52 23.52 0.00 5.28
1864 1904 1.108132 GGTCTAGTCCTACTGGCCGG 61.108 65.000 11.02 11.02 0.00 6.13
1865 1905 1.445716 CGGTCTAGTCCTACTGGCCG 61.446 65.000 0.00 10.15 38.84 6.13
1866 1906 0.106819 TCGGTCTAGTCCTACTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
1867 1907 1.881324 GATCGGTCTAGTCCTACTGGC 59.119 57.143 4.46 0.00 0.00 4.85
1868 1908 2.506444 GGATCGGTCTAGTCCTACTGG 58.494 57.143 4.46 0.00 0.00 4.00
1869 1909 2.144730 CGGATCGGTCTAGTCCTACTG 58.855 57.143 4.46 0.00 0.00 2.74
1875 1915 1.843734 CGCCTCGGATCGGTCTAGTC 61.844 65.000 0.00 0.00 0.00 2.59
1920 1960 1.613836 GATGGATGGATGGACCTTGC 58.386 55.000 0.00 0.00 39.86 4.01
1937 1990 2.043939 CCATGAATGGGATGGGATGGAT 59.956 50.000 1.01 0.00 44.31 3.41
1938 1991 1.430075 CCATGAATGGGATGGGATGGA 59.570 52.381 1.01 0.00 44.31 3.41
1939 1992 1.933021 CCATGAATGGGATGGGATGG 58.067 55.000 1.01 0.00 44.31 3.51
2114 2170 6.785337 TGCAGTTGCTAGTAATTAGGAGTA 57.215 37.500 5.62 0.00 42.66 2.59
2115 2171 5.677319 TGCAGTTGCTAGTAATTAGGAGT 57.323 39.130 5.62 0.00 42.66 3.85
2116 2172 5.698545 GGATGCAGTTGCTAGTAATTAGGAG 59.301 44.000 5.62 0.00 42.66 3.69
2118 2174 5.468072 CAGGATGCAGTTGCTAGTAATTAGG 59.532 44.000 5.62 0.00 42.66 2.69
2139 2204 3.190849 CGCCACGACAGATGCAGG 61.191 66.667 0.00 0.00 0.00 4.85
2154 2224 4.072088 CGGAAACTCACGCCACGC 62.072 66.667 0.00 0.00 0.00 5.34
2169 2239 1.950630 TCGATGCGATGTGATGCGG 60.951 57.895 0.00 0.00 0.00 5.69
2213 2288 4.645136 TGTAAGACTGTAGAGGTGCTATGG 59.355 45.833 0.00 0.00 0.00 2.74
2221 2296 5.502153 ACGCTTATGTAAGACTGTAGAGG 57.498 43.478 4.03 0.00 35.33 3.69
2241 2316 2.800544 AGAACGGACACTGAAATGAACG 59.199 45.455 0.00 0.00 0.00 3.95
2318 2430 1.140652 CTTCTTCCTCCTCCAGCATCC 59.859 57.143 0.00 0.00 0.00 3.51
2325 2437 0.182299 CATGGCCTTCTTCCTCCTCC 59.818 60.000 3.32 0.00 0.00 4.30
2348 2466 2.147849 TGGGGGAATGCCAATATACCA 58.852 47.619 0.00 0.00 35.15 3.25
2350 2468 5.086621 AGATTTGGGGGAATGCCAATATAC 58.913 41.667 0.00 0.00 35.15 1.47
2352 2470 4.217924 AGATTTGGGGGAATGCCAATAT 57.782 40.909 0.00 0.00 35.15 1.28
2353 2471 3.704545 AGATTTGGGGGAATGCCAATA 57.295 42.857 0.00 0.00 35.15 1.90
2354 2472 2.506644 CAAGATTTGGGGGAATGCCAAT 59.493 45.455 0.00 0.00 35.15 3.16
2355 2473 1.907936 CAAGATTTGGGGGAATGCCAA 59.092 47.619 0.00 0.00 35.15 4.52
2356 2474 1.203288 ACAAGATTTGGGGGAATGCCA 60.203 47.619 0.00 0.00 32.78 4.92
2357 2475 1.207811 CACAAGATTTGGGGGAATGCC 59.792 52.381 0.00 0.00 34.12 4.40
2358 2476 2.167075 CTCACAAGATTTGGGGGAATGC 59.833 50.000 0.00 0.00 36.33 3.56
2359 2477 2.762327 CCTCACAAGATTTGGGGGAATG 59.238 50.000 0.00 0.00 36.33 2.67
2360 2478 2.292455 CCCTCACAAGATTTGGGGGAAT 60.292 50.000 0.41 0.00 36.33 3.01
2361 2479 1.077005 CCCTCACAAGATTTGGGGGAA 59.923 52.381 0.41 0.00 36.33 3.97
2362 2480 0.704076 CCCTCACAAGATTTGGGGGA 59.296 55.000 0.41 0.00 36.33 4.81
2363 2481 0.409484 ACCCTCACAAGATTTGGGGG 59.591 55.000 5.69 5.69 42.00 5.40
2364 2482 1.839424 GACCCTCACAAGATTTGGGG 58.161 55.000 0.00 0.00 42.00 4.96
2365 2483 1.271379 ACGACCCTCACAAGATTTGGG 60.271 52.381 0.00 0.00 43.26 4.12
2366 2484 2.185004 ACGACCCTCACAAGATTTGG 57.815 50.000 0.00 0.00 34.12 3.28
2367 2485 3.138304 TGAACGACCCTCACAAGATTTG 58.862 45.455 0.00 0.00 0.00 2.32
2368 2486 3.485463 TGAACGACCCTCACAAGATTT 57.515 42.857 0.00 0.00 0.00 2.17
2369 2487 3.703001 ATGAACGACCCTCACAAGATT 57.297 42.857 0.00 0.00 0.00 2.40
2370 2488 5.104941 TCAATATGAACGACCCTCACAAGAT 60.105 40.000 0.00 0.00 0.00 2.40
2371 2489 4.221924 TCAATATGAACGACCCTCACAAGA 59.778 41.667 0.00 0.00 0.00 3.02
2372 2490 4.503910 TCAATATGAACGACCCTCACAAG 58.496 43.478 0.00 0.00 0.00 3.16
2373 2491 4.545208 TCAATATGAACGACCCTCACAA 57.455 40.909 0.00 0.00 0.00 3.33
2374 2492 4.753516 ATCAATATGAACGACCCTCACA 57.246 40.909 0.00 0.00 0.00 3.58
2375 2493 6.316390 AGAAAATCAATATGAACGACCCTCAC 59.684 38.462 0.00 0.00 0.00 3.51
2376 2494 6.316140 CAGAAAATCAATATGAACGACCCTCA 59.684 38.462 0.00 0.00 0.00 3.86
2377 2495 6.538742 TCAGAAAATCAATATGAACGACCCTC 59.461 38.462 0.00 0.00 0.00 4.30
2378 2496 6.414732 TCAGAAAATCAATATGAACGACCCT 58.585 36.000 0.00 0.00 0.00 4.34
2379 2497 6.677781 TCAGAAAATCAATATGAACGACCC 57.322 37.500 0.00 0.00 0.00 4.46
2380 2498 7.698130 CCTTTCAGAAAATCAATATGAACGACC 59.302 37.037 0.00 0.00 30.07 4.79
2381 2499 8.450964 TCCTTTCAGAAAATCAATATGAACGAC 58.549 33.333 0.00 0.00 30.07 4.34
2382 2500 8.560355 TCCTTTCAGAAAATCAATATGAACGA 57.440 30.769 0.00 0.00 30.07 3.85
2383 2501 9.065871 GTTCCTTTCAGAAAATCAATATGAACG 57.934 33.333 0.00 0.00 30.07 3.95
2384 2502 9.912634 TGTTCCTTTCAGAAAATCAATATGAAC 57.087 29.630 0.00 0.00 30.07 3.18
2388 2506 9.374838 GCAATGTTCCTTTCAGAAAATCAATAT 57.625 29.630 0.00 0.00 0.00 1.28
2389 2507 8.366401 TGCAATGTTCCTTTCAGAAAATCAATA 58.634 29.630 0.00 0.00 0.00 1.90
2390 2508 7.218614 TGCAATGTTCCTTTCAGAAAATCAAT 58.781 30.769 0.00 0.00 0.00 2.57
2417 2535 1.358759 CGGCTGGACCACAACAAAC 59.641 57.895 0.00 0.00 39.03 2.93
2432 2550 3.272334 AATTCTCCATCGCGCGGC 61.272 61.111 31.69 0.00 0.00 6.53
2434 2552 1.561730 CTCAATTCTCCATCGCGCG 59.438 57.895 26.76 26.76 0.00 6.86
2435 2553 1.502163 CCCTCAATTCTCCATCGCGC 61.502 60.000 0.00 0.00 0.00 6.86
2436 2554 0.179073 ACCCTCAATTCTCCATCGCG 60.179 55.000 0.00 0.00 0.00 5.87
2437 2555 1.587547 GACCCTCAATTCTCCATCGC 58.412 55.000 0.00 0.00 0.00 4.58
2438 2556 1.858091 CGACCCTCAATTCTCCATCG 58.142 55.000 0.00 0.00 0.00 3.84
2439 2557 1.139853 AGCGACCCTCAATTCTCCATC 59.860 52.381 0.00 0.00 0.00 3.51
2440 2558 1.134280 CAGCGACCCTCAATTCTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
2441 2559 0.250234 CAGCGACCCTCAATTCTCCA 59.750 55.000 0.00 0.00 0.00 3.86
2511 2654 3.118261 TGGTTGAGAAGTGAGGGATATGC 60.118 47.826 0.00 0.00 0.00 3.14
2518 2661 2.619074 GGGGATTGGTTGAGAAGTGAGG 60.619 54.545 0.00 0.00 0.00 3.86
2593 2740 2.803492 GCCAACTAGGATTACGGAGCTG 60.803 54.545 0.00 0.00 41.22 4.24
2594 2741 1.413077 GCCAACTAGGATTACGGAGCT 59.587 52.381 0.00 0.00 41.22 4.09
2595 2742 1.540580 GGCCAACTAGGATTACGGAGC 60.541 57.143 0.00 0.00 41.22 4.70
2597 2744 0.748450 CGGCCAACTAGGATTACGGA 59.252 55.000 2.24 0.00 41.22 4.69
2600 2747 2.367567 TGGATCGGCCAACTAGGATTAC 59.632 50.000 2.24 0.00 45.87 1.89
2602 2749 1.507140 TGGATCGGCCAACTAGGATT 58.493 50.000 2.24 0.00 45.87 3.01
2641 2788 1.601430 GAAGAAGAATCGCCATGGAGC 59.399 52.381 18.40 0.00 0.00 4.70
2686 2845 1.066914 CAGAGCAGAGCGTTTCACTC 58.933 55.000 0.00 0.00 33.65 3.51
2708 2867 1.134580 CGCCACTCATTCATCCAGACT 60.135 52.381 0.00 0.00 0.00 3.24
2709 2868 1.293924 CGCCACTCATTCATCCAGAC 58.706 55.000 0.00 0.00 0.00 3.51
2710 2869 0.462581 GCGCCACTCATTCATCCAGA 60.463 55.000 0.00 0.00 0.00 3.86
2711 2870 0.745486 TGCGCCACTCATTCATCCAG 60.745 55.000 4.18 0.00 0.00 3.86
2712 2871 0.322366 TTGCGCCACTCATTCATCCA 60.322 50.000 4.18 0.00 0.00 3.41
2713 2872 0.379669 CTTGCGCCACTCATTCATCC 59.620 55.000 4.18 0.00 0.00 3.51
2714 2873 0.379669 CCTTGCGCCACTCATTCATC 59.620 55.000 4.18 0.00 0.00 2.92
2715 2874 0.035152 TCCTTGCGCCACTCATTCAT 60.035 50.000 4.18 0.00 0.00 2.57
2731 2890 0.033504 TCTTTCGAGCAGCGTTTCCT 59.966 50.000 0.00 0.00 41.80 3.36
2781 2940 1.659644 GCGGGTACGAATAGGACGC 60.660 63.158 0.00 0.00 44.60 5.19
2786 2945 3.461843 GTACGGCGGGTACGAATAG 57.538 57.895 13.24 0.00 41.91 1.73
2813 2988 4.072839 TGACCGGACTAGCATATGACTAG 58.927 47.826 22.23 22.23 42.37 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.