Multiple sequence alignment - TraesCS1A01G411000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G411000 chr1A 100.000 2198 0 0 1 2198 571882754 571880557 0.000000e+00 4060.0
1 TraesCS1A01G411000 chr1A 88.679 212 23 1 740 951 456370200 456370410 7.790000e-65 257.0
2 TraesCS1A01G411000 chr1A 86.022 93 11 2 94 184 51202420 51202328 4.990000e-17 99.0
3 TraesCS1A01G411000 chr1D 89.458 1347 81 23 740 2061 475967446 475966136 0.000000e+00 1644.0
4 TraesCS1A01G411000 chr1D 83.974 312 21 11 435 729 475967792 475967493 2.780000e-69 272.0
5 TraesCS1A01G411000 chr1D 88.000 200 7 4 242 431 475968032 475967840 1.020000e-53 220.0
6 TraesCS1A01G411000 chr1D 83.696 92 10 3 1778 1865 377006920 377007010 5.030000e-12 82.4
7 TraesCS1A01G411000 chr1B 88.878 1043 66 21 529 1543 662176259 662175239 0.000000e+00 1238.0
8 TraesCS1A01G411000 chr1B 88.172 93 9 2 94 184 67045871 67045963 2.310000e-20 110.0
9 TraesCS1A01G411000 chr1B 86.957 92 10 2 95 184 25505784 25505875 3.860000e-18 102.0
10 TraesCS1A01G411000 chr1B 86.022 93 11 2 95 185 639035563 639035471 4.990000e-17 99.0
11 TraesCS1A01G411000 chr3A 86.869 99 13 0 1833 1931 621323768 621323866 6.410000e-21 111.0
12 TraesCS1A01G411000 chr3A 83.929 112 10 8 86 191 687005670 687005779 1.390000e-17 100.0
13 TraesCS1A01G411000 chr3A 92.537 67 2 1 1771 1834 599863804 599863738 2.320000e-15 93.5
14 TraesCS1A01G411000 chr3A 91.429 70 2 2 1769 1834 621323734 621323803 2.320000e-15 93.5
15 TraesCS1A01G411000 chr3A 91.304 69 3 1 1769 1834 686191210 686191278 8.360000e-15 91.6
16 TraesCS1A01G411000 chr7A 86.458 96 13 0 1837 1932 508643027 508642932 2.980000e-19 106.0
17 TraesCS1A01G411000 chr7A 89.286 84 9 0 1854 1937 625737289 625737372 2.980000e-19 106.0
18 TraesCS1A01G411000 chr7A 83.333 114 16 3 95 206 666149629 666149517 3.860000e-18 102.0
19 TraesCS1A01G411000 chr3B 87.097 93 10 2 95 185 744019036 744018944 1.070000e-18 104.0
20 TraesCS1A01G411000 chr3B 85.417 96 14 0 1837 1932 783152197 783152102 1.390000e-17 100.0
21 TraesCS1A01G411000 chr6B 86.957 92 10 2 95 184 63980550 63980459 3.860000e-18 102.0
22 TraesCS1A01G411000 chr6B 87.356 87 11 0 1851 1937 213838071 213838157 1.390000e-17 100.0
23 TraesCS1A01G411000 chr6B 88.608 79 7 2 1854 1931 162567292 162567215 6.460000e-16 95.3
24 TraesCS1A01G411000 chr4A 85.417 96 14 0 1837 1932 600910363 600910458 1.390000e-17 100.0
25 TraesCS1A01G411000 chr2B 84.762 105 10 6 85 185 584817901 584818003 1.390000e-17 100.0
26 TraesCS1A01G411000 chr7B 92.754 69 2 1 1770 1835 123782863 123782931 1.800000e-16 97.1
27 TraesCS1A01G411000 chr5B 85.714 91 13 0 1837 1927 118534218 118534308 1.800000e-16 97.1
28 TraesCS1A01G411000 chr5A 85.714 91 13 0 1837 1927 524028421 524028511 1.800000e-16 97.1
29 TraesCS1A01G411000 chr5D 93.750 64 1 1 1772 1832 413285585 413285648 2.320000e-15 93.5
30 TraesCS1A01G411000 chr2A 92.424 66 2 1 1769 1831 417745642 417745707 8.360000e-15 91.6
31 TraesCS1A01G411000 chr4D 92.308 65 2 1 1773 1834 439780483 439780419 3.010000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G411000 chr1A 571880557 571882754 2197 True 4060 4060 100.000 1 2198 1 chr1A.!!$R2 2197
1 TraesCS1A01G411000 chr1D 475966136 475968032 1896 True 712 1644 87.144 242 2061 3 chr1D.!!$R1 1819
2 TraesCS1A01G411000 chr1B 662175239 662176259 1020 True 1238 1238 88.878 529 1543 1 chr1B.!!$R2 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.108138 ATCGTGTGCTCCCTGTAAGC 60.108 55.0 0.0 0.0 40.26 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2141 0.320421 CGTGGGTTTCTCGGTGTGAT 60.32 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.383026 CAAATGTCTTTGCCGACCG 57.617 52.632 0.00 0.00 35.69 4.79
19 20 0.729140 CAAATGTCTTTGCCGACCGC 60.729 55.000 0.00 0.00 35.69 5.68
20 21 2.182614 AAATGTCTTTGCCGACCGCG 62.183 55.000 0.00 0.00 42.08 6.46
21 22 3.876589 ATGTCTTTGCCGACCGCGT 62.877 57.895 4.92 0.00 42.08 6.01
22 23 4.072088 GTCTTTGCCGACCGCGTG 62.072 66.667 4.92 0.00 42.08 5.34
23 24 4.595538 TCTTTGCCGACCGCGTGT 62.596 61.111 4.92 1.93 42.08 4.49
24 25 3.645975 CTTTGCCGACCGCGTGTT 61.646 61.111 4.92 0.00 42.08 3.32
25 26 3.855209 CTTTGCCGACCGCGTGTTG 62.855 63.158 4.92 6.68 42.08 3.33
27 28 3.786901 TTGCCGACCGCGTGTTGTA 62.787 57.895 4.92 0.00 42.08 2.41
28 29 3.037249 GCCGACCGCGTGTTGTAA 61.037 61.111 4.92 0.00 35.23 2.41
29 30 3.007070 GCCGACCGCGTGTTGTAAG 62.007 63.158 4.92 0.00 35.23 2.34
30 31 2.468532 CGACCGCGTGTTGTAAGC 59.531 61.111 4.92 0.00 0.00 3.09
31 32 2.858158 GACCGCGTGTTGTAAGCC 59.142 61.111 4.92 0.00 0.00 4.35
32 33 3.007070 GACCGCGTGTTGTAAGCCG 62.007 63.158 4.92 0.00 0.00 5.52
33 34 3.784412 CCGCGTGTTGTAAGCCGG 61.784 66.667 4.92 0.00 0.00 6.13
34 35 3.784412 CGCGTGTTGTAAGCCGGG 61.784 66.667 2.18 0.00 0.00 5.73
35 36 2.667199 GCGTGTTGTAAGCCGGGT 60.667 61.111 0.00 0.00 0.00 5.28
36 37 2.961669 GCGTGTTGTAAGCCGGGTG 61.962 63.158 7.07 0.00 0.00 4.61
37 38 2.951458 GTGTTGTAAGCCGGGTGC 59.049 61.111 7.07 3.92 41.71 5.01
46 47 2.650778 GCCGGGTGCTTTTTCCAG 59.349 61.111 2.18 0.00 36.87 3.86
47 48 2.200337 GCCGGGTGCTTTTTCCAGT 61.200 57.895 2.18 0.00 36.87 4.00
48 49 0.891904 GCCGGGTGCTTTTTCCAGTA 60.892 55.000 2.18 0.00 36.87 2.74
49 50 1.165270 CCGGGTGCTTTTTCCAGTAG 58.835 55.000 0.00 0.00 0.00 2.57
50 51 1.271163 CCGGGTGCTTTTTCCAGTAGA 60.271 52.381 0.00 0.00 0.00 2.59
51 52 2.618045 CCGGGTGCTTTTTCCAGTAGAT 60.618 50.000 0.00 0.00 0.00 1.98
52 53 3.370103 CCGGGTGCTTTTTCCAGTAGATA 60.370 47.826 0.00 0.00 0.00 1.98
53 54 4.451900 CGGGTGCTTTTTCCAGTAGATAT 58.548 43.478 0.00 0.00 0.00 1.63
54 55 4.511826 CGGGTGCTTTTTCCAGTAGATATC 59.488 45.833 0.00 0.00 0.00 1.63
55 56 4.511826 GGGTGCTTTTTCCAGTAGATATCG 59.488 45.833 0.00 0.00 0.00 2.92
56 57 5.116882 GGTGCTTTTTCCAGTAGATATCGT 58.883 41.667 0.00 0.00 0.00 3.73
57 58 5.006746 GGTGCTTTTTCCAGTAGATATCGTG 59.993 44.000 0.00 0.00 0.00 4.35
58 59 5.581085 GTGCTTTTTCCAGTAGATATCGTGT 59.419 40.000 0.00 0.00 0.00 4.49
59 60 5.580691 TGCTTTTTCCAGTAGATATCGTGTG 59.419 40.000 0.00 0.00 0.00 3.82
60 61 5.502544 GCTTTTTCCAGTAGATATCGTGTGC 60.503 44.000 0.00 0.00 0.00 4.57
61 62 5.339008 TTTTCCAGTAGATATCGTGTGCT 57.661 39.130 0.00 0.00 0.00 4.40
62 63 4.569761 TTCCAGTAGATATCGTGTGCTC 57.430 45.455 0.00 0.00 0.00 4.26
63 64 2.885266 TCCAGTAGATATCGTGTGCTCC 59.115 50.000 0.00 0.00 0.00 4.70
64 65 2.029828 CCAGTAGATATCGTGTGCTCCC 60.030 54.545 0.00 0.00 0.00 4.30
65 66 2.887783 CAGTAGATATCGTGTGCTCCCT 59.112 50.000 0.00 0.00 0.00 4.20
66 67 2.887783 AGTAGATATCGTGTGCTCCCTG 59.112 50.000 0.00 0.00 0.00 4.45
67 68 1.781786 AGATATCGTGTGCTCCCTGT 58.218 50.000 0.00 0.00 0.00 4.00
68 69 2.945456 AGATATCGTGTGCTCCCTGTA 58.055 47.619 0.00 0.00 0.00 2.74
69 70 3.296854 AGATATCGTGTGCTCCCTGTAA 58.703 45.455 0.00 0.00 0.00 2.41
70 71 3.319405 AGATATCGTGTGCTCCCTGTAAG 59.681 47.826 0.00 0.00 0.00 2.34
71 72 0.108138 ATCGTGTGCTCCCTGTAAGC 60.108 55.000 0.00 0.00 40.26 3.09
72 73 1.741770 CGTGTGCTCCCTGTAAGCC 60.742 63.158 0.00 0.00 39.05 4.35
73 74 1.741770 GTGTGCTCCCTGTAAGCCG 60.742 63.158 0.00 0.00 39.05 5.52
74 75 1.911269 TGTGCTCCCTGTAAGCCGA 60.911 57.895 0.00 0.00 39.05 5.54
75 76 1.153549 GTGCTCCCTGTAAGCCGAG 60.154 63.158 0.00 0.00 39.05 4.63
76 77 1.304962 TGCTCCCTGTAAGCCGAGA 60.305 57.895 0.00 0.00 39.05 4.04
77 78 1.323271 TGCTCCCTGTAAGCCGAGAG 61.323 60.000 0.00 0.00 39.05 3.20
78 79 1.324005 GCTCCCTGTAAGCCGAGAGT 61.324 60.000 0.00 0.00 32.37 3.24
79 80 1.187087 CTCCCTGTAAGCCGAGAGTT 58.813 55.000 0.00 0.00 32.37 3.01
80 81 1.550976 CTCCCTGTAAGCCGAGAGTTT 59.449 52.381 0.00 0.00 32.37 2.66
81 82 1.975680 TCCCTGTAAGCCGAGAGTTTT 59.024 47.619 0.00 0.00 0.00 2.43
82 83 2.370849 TCCCTGTAAGCCGAGAGTTTTT 59.629 45.455 0.00 0.00 0.00 1.94
117 118 4.231718 CTCGCTTAGAGGAACATAGGTC 57.768 50.000 0.00 0.00 43.20 3.85
118 119 2.617308 TCGCTTAGAGGAACATAGGTCG 59.383 50.000 0.00 0.00 0.00 4.79
119 120 2.617308 CGCTTAGAGGAACATAGGTCGA 59.383 50.000 0.00 0.00 0.00 4.20
120 121 3.304123 CGCTTAGAGGAACATAGGTCGAG 60.304 52.174 0.00 0.00 0.00 4.04
121 122 3.633065 GCTTAGAGGAACATAGGTCGAGT 59.367 47.826 0.00 0.00 0.00 4.18
122 123 4.820716 GCTTAGAGGAACATAGGTCGAGTA 59.179 45.833 0.00 0.00 0.00 2.59
123 124 5.277925 GCTTAGAGGAACATAGGTCGAGTAC 60.278 48.000 0.00 0.00 0.00 2.73
134 135 3.508744 GGTCGAGTACCCGAACATTAA 57.491 47.619 10.23 0.00 44.93 1.40
135 136 3.182182 GGTCGAGTACCCGAACATTAAC 58.818 50.000 10.23 0.00 44.93 2.01
136 137 3.119352 GGTCGAGTACCCGAACATTAACT 60.119 47.826 10.23 0.00 44.93 2.24
137 138 4.101235 GTCGAGTACCCGAACATTAACTC 58.899 47.826 0.00 0.00 40.51 3.01
138 139 3.758023 TCGAGTACCCGAACATTAACTCA 59.242 43.478 0.00 0.00 35.42 3.41
139 140 4.103357 CGAGTACCCGAACATTAACTCAG 58.897 47.826 0.00 0.00 34.41 3.35
140 141 4.430908 GAGTACCCGAACATTAACTCAGG 58.569 47.826 0.00 0.00 34.78 3.86
141 142 2.781681 ACCCGAACATTAACTCAGGG 57.218 50.000 0.00 0.00 42.82 4.45
142 143 1.339727 ACCCGAACATTAACTCAGGGC 60.340 52.381 0.00 0.00 40.94 5.19
143 144 1.065418 CCCGAACATTAACTCAGGGCT 60.065 52.381 0.00 0.00 0.00 5.19
144 145 2.618045 CCCGAACATTAACTCAGGGCTT 60.618 50.000 0.00 0.00 0.00 4.35
145 146 3.370103 CCCGAACATTAACTCAGGGCTTA 60.370 47.826 0.00 0.00 0.00 3.09
146 147 4.451900 CCGAACATTAACTCAGGGCTTAT 58.548 43.478 0.00 0.00 0.00 1.73
147 148 5.454187 CCCGAACATTAACTCAGGGCTTATA 60.454 44.000 0.00 0.00 0.00 0.98
148 149 5.696724 CCGAACATTAACTCAGGGCTTATAG 59.303 44.000 0.00 0.00 0.00 1.31
149 150 5.696724 CGAACATTAACTCAGGGCTTATAGG 59.303 44.000 0.00 0.00 0.00 2.57
150 151 4.974399 ACATTAACTCAGGGCTTATAGGC 58.026 43.478 0.00 0.00 40.51 3.93
151 152 4.660771 ACATTAACTCAGGGCTTATAGGCT 59.339 41.667 6.81 0.00 41.09 4.58
152 153 5.844516 ACATTAACTCAGGGCTTATAGGCTA 59.155 40.000 6.81 0.00 41.09 3.93
153 154 6.329197 ACATTAACTCAGGGCTTATAGGCTAA 59.671 38.462 6.81 0.00 41.09 3.09
154 155 4.691326 AACTCAGGGCTTATAGGCTAAC 57.309 45.455 6.81 0.00 41.09 2.34
155 156 3.654273 ACTCAGGGCTTATAGGCTAACA 58.346 45.455 6.81 0.00 41.09 2.41
156 157 3.388350 ACTCAGGGCTTATAGGCTAACAC 59.612 47.826 6.81 0.00 41.09 3.32
157 158 3.380393 TCAGGGCTTATAGGCTAACACA 58.620 45.455 6.81 0.00 41.09 3.72
158 159 3.134081 TCAGGGCTTATAGGCTAACACAC 59.866 47.826 6.81 0.00 41.09 3.82
159 160 2.102588 AGGGCTTATAGGCTAACACACG 59.897 50.000 6.81 0.00 41.09 4.49
160 161 2.480845 GGCTTATAGGCTAACACACGG 58.519 52.381 6.81 0.00 37.85 4.94
161 162 2.480845 GCTTATAGGCTAACACACGGG 58.519 52.381 0.00 0.00 0.00 5.28
162 163 2.101917 GCTTATAGGCTAACACACGGGA 59.898 50.000 0.00 0.00 0.00 5.14
163 164 3.431207 GCTTATAGGCTAACACACGGGAA 60.431 47.826 0.00 0.00 0.00 3.97
164 165 4.761975 CTTATAGGCTAACACACGGGAAA 58.238 43.478 0.00 0.00 0.00 3.13
165 166 3.706600 ATAGGCTAACACACGGGAAAA 57.293 42.857 0.00 0.00 0.00 2.29
166 167 1.601166 AGGCTAACACACGGGAAAAC 58.399 50.000 0.00 0.00 0.00 2.43
167 168 0.236449 GGCTAACACACGGGAAAACG 59.764 55.000 0.00 0.00 40.31 3.60
168 169 0.236449 GCTAACACACGGGAAAACGG 59.764 55.000 0.00 0.00 38.39 4.44
169 170 1.868469 CTAACACACGGGAAAACGGA 58.132 50.000 0.00 0.00 38.39 4.69
170 171 2.211806 CTAACACACGGGAAAACGGAA 58.788 47.619 0.00 0.00 38.39 4.30
171 172 1.682740 AACACACGGGAAAACGGAAT 58.317 45.000 0.00 0.00 38.39 3.01
172 173 1.682740 ACACACGGGAAAACGGAATT 58.317 45.000 0.00 0.00 38.39 2.17
173 174 2.025898 ACACACGGGAAAACGGAATTT 58.974 42.857 0.00 0.00 38.39 1.82
174 175 2.427812 ACACACGGGAAAACGGAATTTT 59.572 40.909 0.00 0.00 43.44 1.82
184 185 4.499037 AAACGGAATTTTCCTGTAGTGC 57.501 40.909 7.69 0.00 45.33 4.40
185 186 3.418684 ACGGAATTTTCCTGTAGTGCT 57.581 42.857 7.69 0.00 45.33 4.40
186 187 4.546829 ACGGAATTTTCCTGTAGTGCTA 57.453 40.909 7.69 0.00 45.33 3.49
187 188 5.099042 ACGGAATTTTCCTGTAGTGCTAT 57.901 39.130 7.69 0.00 45.33 2.97
188 189 5.497474 ACGGAATTTTCCTGTAGTGCTATT 58.503 37.500 7.69 0.00 45.33 1.73
189 190 5.944007 ACGGAATTTTCCTGTAGTGCTATTT 59.056 36.000 7.69 0.00 45.33 1.40
190 191 6.433093 ACGGAATTTTCCTGTAGTGCTATTTT 59.567 34.615 7.69 0.00 45.33 1.82
191 192 7.039993 ACGGAATTTTCCTGTAGTGCTATTTTT 60.040 33.333 7.69 0.00 45.33 1.94
192 193 8.455682 CGGAATTTTCCTGTAGTGCTATTTTTA 58.544 33.333 7.69 0.00 45.33 1.52
217 218 5.993748 TTCAAGTTTTGAAACCCTTGTCT 57.006 34.783 13.15 0.00 45.94 3.41
218 219 5.993748 TCAAGTTTTGAAACCCTTGTCTT 57.006 34.783 13.15 0.00 39.71 3.01
219 220 5.961272 TCAAGTTTTGAAACCCTTGTCTTC 58.039 37.500 13.15 0.00 39.71 2.87
220 221 5.478679 TCAAGTTTTGAAACCCTTGTCTTCA 59.521 36.000 13.15 0.00 39.71 3.02
221 222 6.154363 TCAAGTTTTGAAACCCTTGTCTTCAT 59.846 34.615 13.15 0.00 39.71 2.57
222 223 6.544928 AGTTTTGAAACCCTTGTCTTCATT 57.455 33.333 3.14 0.00 39.71 2.57
223 224 7.654022 AGTTTTGAAACCCTTGTCTTCATTA 57.346 32.000 3.14 0.00 39.71 1.90
224 225 8.250143 AGTTTTGAAACCCTTGTCTTCATTAT 57.750 30.769 3.14 0.00 39.71 1.28
225 226 8.704668 AGTTTTGAAACCCTTGTCTTCATTATT 58.295 29.630 3.14 0.00 39.71 1.40
226 227 9.325198 GTTTTGAAACCCTTGTCTTCATTATTT 57.675 29.630 0.00 0.00 32.82 1.40
227 228 9.898152 TTTTGAAACCCTTGTCTTCATTATTTT 57.102 25.926 0.00 0.00 0.00 1.82
228 229 8.885494 TTGAAACCCTTGTCTTCATTATTTTG 57.115 30.769 0.00 0.00 0.00 2.44
229 230 8.017418 TGAAACCCTTGTCTTCATTATTTTGT 57.983 30.769 0.00 0.00 0.00 2.83
230 231 9.137459 TGAAACCCTTGTCTTCATTATTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
231 232 9.626045 GAAACCCTTGTCTTCATTATTTTGTAG 57.374 33.333 0.00 0.00 0.00 2.74
232 233 7.158099 ACCCTTGTCTTCATTATTTTGTAGC 57.842 36.000 0.00 0.00 0.00 3.58
233 234 6.152831 ACCCTTGTCTTCATTATTTTGTAGCC 59.847 38.462 0.00 0.00 0.00 3.93
234 235 6.152661 CCCTTGTCTTCATTATTTTGTAGCCA 59.847 38.462 0.00 0.00 0.00 4.75
235 236 7.309744 CCCTTGTCTTCATTATTTTGTAGCCAA 60.310 37.037 0.00 0.00 0.00 4.52
236 237 8.253113 CCTTGTCTTCATTATTTTGTAGCCAAT 58.747 33.333 0.00 0.00 0.00 3.16
237 238 9.643693 CTTGTCTTCATTATTTTGTAGCCAATT 57.356 29.630 0.00 0.00 0.00 2.32
238 239 8.984891 TGTCTTCATTATTTTGTAGCCAATTG 57.015 30.769 0.00 0.00 0.00 2.32
239 240 8.801299 TGTCTTCATTATTTTGTAGCCAATTGA 58.199 29.630 7.12 0.00 0.00 2.57
240 241 9.294030 GTCTTCATTATTTTGTAGCCAATTGAG 57.706 33.333 7.12 0.00 0.00 3.02
260 261 1.462616 CGGCTTCATTTGGGATCACA 58.537 50.000 0.00 0.00 0.00 3.58
273 274 7.789202 TTTGGGATCACAATTGGAATCTAAA 57.211 32.000 12.06 13.02 0.00 1.85
352 353 2.988684 GCATTGGCCACGTCCCAA 60.989 61.111 16.93 16.93 45.63 4.12
360 361 2.590575 CACGTCCCAAAGCACCGT 60.591 61.111 0.00 0.00 0.00 4.83
387 388 3.827898 CGGACTCCGGGCTCTCAC 61.828 72.222 9.85 0.00 44.15 3.51
404 415 0.524392 CACACTTCAAACGCGGCAAA 60.524 50.000 12.47 0.00 0.00 3.68
464 519 1.581934 ACGTCATGTGTCCAACTGTG 58.418 50.000 0.00 0.00 0.00 3.66
469 535 2.106338 TCATGTGTCCAACTGTGATGGT 59.894 45.455 0.00 0.00 39.09 3.55
477 543 2.813754 CCAACTGTGATGGTGATTTCGT 59.186 45.455 0.00 0.00 33.08 3.85
485 551 2.498644 TGGTGATTTCGTTATGGCCA 57.501 45.000 8.56 8.56 0.00 5.36
488 554 3.130164 TGGTGATTTCGTTATGGCCAATG 59.870 43.478 10.96 0.00 0.00 2.82
496 562 2.722094 GTTATGGCCAATGTCCAGTGA 58.278 47.619 10.96 0.00 36.98 3.41
508 574 0.948623 TCCAGTGATGGTTCGTTGCG 60.949 55.000 0.00 0.00 0.00 4.85
520 586 3.059051 GGTTCGTTGCGGTGTACATAAAA 60.059 43.478 0.00 0.00 0.00 1.52
522 588 5.148568 GTTCGTTGCGGTGTACATAAAAAT 58.851 37.500 0.00 0.00 0.00 1.82
527 593 6.237175 CGTTGCGGTGTACATAAAAATTCATG 60.237 38.462 0.00 0.00 0.00 3.07
550 619 9.858247 CATGAATGTTTTTCAAAGAAGACAATG 57.142 29.630 0.00 0.00 31.55 2.82
576 645 3.690475 TGAGCTGTCCATGGCTATATG 57.310 47.619 6.96 0.00 39.05 1.78
580 649 2.082231 CTGTCCATGGCTATATGCAGC 58.918 52.381 6.96 0.00 45.15 5.25
633 702 6.183360 GCTTTCCGCAATTATCATGGCTATAT 60.183 38.462 0.00 0.00 38.92 0.86
640 709 8.992073 CGCAATTATCATGGCTATATGCTATTA 58.008 33.333 0.00 0.00 41.06 0.98
702 774 8.795786 TTCAAAGAAAACAATAAATCGTGAGG 57.204 30.769 0.00 0.00 0.00 3.86
725 797 9.291234 GAGGTGTCCTTGACTGTATCCAGTATC 62.291 48.148 0.00 0.00 42.71 2.24
734 806 5.728637 CTGTATCCAGTATCCAGTATGCA 57.271 43.478 0.00 0.00 33.80 3.96
736 808 3.692257 ATCCAGTATCCAGTATGCAGC 57.308 47.619 0.00 0.00 31.97 5.25
737 809 2.397597 TCCAGTATCCAGTATGCAGCA 58.602 47.619 0.00 0.00 31.97 4.41
738 810 2.103094 TCCAGTATCCAGTATGCAGCAC 59.897 50.000 0.00 0.00 31.97 4.40
836 944 4.081761 CGCGCCGATTTAATGATATTCAC 58.918 43.478 0.00 0.00 0.00 3.18
1065 1177 1.145819 GGTCTGCCTGCTCCTGATC 59.854 63.158 0.00 0.00 0.00 2.92
1090 1202 4.147449 CATCGGCGAGGGTGCAGA 62.147 66.667 17.22 0.00 43.05 4.26
1251 1363 1.196012 CCTCCCTAGAACTGTGTCCC 58.804 60.000 0.00 0.00 0.00 4.46
1265 1377 0.394192 TGTCCCTGAAGTGAGCACAG 59.606 55.000 3.19 0.00 0.00 3.66
1286 1398 5.159925 CAGATTCTACTGGATCTGCATACG 58.840 45.833 1.89 0.00 34.86 3.06
1307 1419 3.425359 CGTCGAAATGATTCTGCTGCTTT 60.425 43.478 0.00 0.00 33.17 3.51
1311 1423 4.322804 CGAAATGATTCTGCTGCTTTTCAC 59.677 41.667 0.00 0.00 33.17 3.18
1314 1426 2.031769 TGATTCTGCTGCTTTTCACGTG 60.032 45.455 9.94 9.94 0.00 4.49
1354 1467 6.779539 AGAACTTTTTCTGGTGATTCCAATCT 59.220 34.615 1.13 0.00 46.59 2.40
1398 1512 5.104067 GGGTAATAAACTGGGAGGAGATTGT 60.104 44.000 0.00 0.00 0.00 2.71
1409 1523 4.249661 GGAGGAGATTGTTGTCAGTTCTC 58.750 47.826 0.00 0.00 35.65 2.87
1539 1669 6.208402 TGGATCAAACAAGCAGCTATAAACAA 59.792 34.615 0.00 0.00 0.00 2.83
1658 1788 0.301687 CATCGTCGCCAGCATGTTAC 59.698 55.000 0.00 0.00 0.00 2.50
1675 1805 3.450817 TGTTACTGTCGATCATGGATGGT 59.549 43.478 0.00 0.00 0.00 3.55
1687 1817 6.369890 CGATCATGGATGGTAAGTAATCAAGG 59.630 42.308 0.00 0.00 0.00 3.61
1727 1857 0.681243 GGCCCCGAAGAAGAAATGCT 60.681 55.000 0.00 0.00 0.00 3.79
1734 1864 3.181526 CCGAAGAAGAAATGCTGAAGTCG 60.182 47.826 0.00 0.00 0.00 4.18
1737 1867 0.798776 AAGAAATGCTGAAGTCGCCG 59.201 50.000 0.00 0.00 0.00 6.46
1739 1869 2.583685 GAAATGCTGAAGTCGCCGCC 62.584 60.000 0.00 0.00 0.00 6.13
1756 1886 2.202932 CGCCGGAAGATCCACAGG 60.203 66.667 5.05 0.00 35.91 4.00
1771 1901 1.154430 ACAGGCCCTAACCTCCAAAA 58.846 50.000 0.00 0.00 38.26 2.44
1802 1932 6.543831 CCTCCATCCCAAATTACTTGTCTTAG 59.456 42.308 0.00 0.00 32.65 2.18
1803 1933 7.265599 TCCATCCCAAATTACTTGTCTTAGA 57.734 36.000 0.00 0.00 32.65 2.10
1817 1947 8.912787 ACTTGTCTTAGATTTGTCTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
1818 1948 7.974501 ACTTGTCTTAGATTTGTCTACATACGG 59.025 37.037 0.00 0.00 0.00 4.02
1819 1949 7.400599 TGTCTTAGATTTGTCTACATACGGT 57.599 36.000 0.00 0.00 0.00 4.83
1820 1950 8.510243 TGTCTTAGATTTGTCTACATACGGTA 57.490 34.615 0.00 0.00 0.00 4.02
1821 1951 9.128404 TGTCTTAGATTTGTCTACATACGGTAT 57.872 33.333 0.00 0.00 0.00 2.73
1822 1952 9.609950 GTCTTAGATTTGTCTACATACGGTATC 57.390 37.037 0.00 0.00 0.00 2.24
1823 1953 9.570468 TCTTAGATTTGTCTACATACGGTATCT 57.430 33.333 0.00 0.00 0.00 1.98
1827 1957 9.128404 AGATTTGTCTACATACGGTATCTAACA 57.872 33.333 0.00 0.00 0.00 2.41
1828 1958 9.178427 GATTTGTCTACATACGGTATCTAACAC 57.822 37.037 0.00 0.00 0.00 3.32
1829 1959 7.870509 TTGTCTACATACGGTATCTAACACT 57.129 36.000 0.00 0.00 0.00 3.55
1830 1960 8.962884 TTGTCTACATACGGTATCTAACACTA 57.037 34.615 0.00 0.00 0.00 2.74
1831 1961 8.962884 TGTCTACATACGGTATCTAACACTAA 57.037 34.615 0.00 0.00 0.00 2.24
1832 1962 9.394767 TGTCTACATACGGTATCTAACACTAAA 57.605 33.333 0.00 0.00 0.00 1.85
1917 2051 8.947115 AGACAAATCTAAAAGAAGTAATTCGGG 58.053 33.333 0.00 0.00 31.46 5.14
1933 2067 2.502633 GGGACGGAGGGACTAGTTC 58.497 63.158 0.00 0.00 41.55 3.01
1948 2088 3.570550 ACTAGTTCGTAGGCCTCATGATC 59.429 47.826 9.68 5.12 32.29 2.92
1951 2091 2.866762 GTTCGTAGGCCTCATGATCAAC 59.133 50.000 9.68 0.00 0.00 3.18
1975 2115 2.249309 TAGGGAGGAGGTCAAAGGAC 57.751 55.000 0.00 0.00 43.55 3.85
2001 2141 7.415095 CCACACTGTAAAGTGAATCTGTTTTCA 60.415 37.037 20.22 0.00 42.02 2.69
2006 2146 8.219546 TGTAAAGTGAATCTGTTTTCATCACA 57.780 30.769 6.94 0.00 38.84 3.58
2047 2187 2.170166 TGGATTTGGCAGTGTGAATCC 58.830 47.619 17.24 17.24 44.93 3.01
2048 2188 1.133025 GGATTTGGCAGTGTGAATCCG 59.867 52.381 11.09 0.00 38.48 4.18
2055 2195 0.729116 CAGTGTGAATCCGATGGTGC 59.271 55.000 0.00 0.00 0.00 5.01
2058 2198 2.236146 AGTGTGAATCCGATGGTGCTTA 59.764 45.455 0.00 0.00 0.00 3.09
2061 2201 3.876914 TGTGAATCCGATGGTGCTTATTC 59.123 43.478 0.00 0.00 0.00 1.75
2062 2202 3.876914 GTGAATCCGATGGTGCTTATTCA 59.123 43.478 0.00 0.00 32.51 2.57
2063 2203 4.024556 GTGAATCCGATGGTGCTTATTCAG 60.025 45.833 0.00 0.00 34.88 3.02
2064 2204 4.141733 TGAATCCGATGGTGCTTATTCAGA 60.142 41.667 0.00 0.00 31.61 3.27
2065 2205 4.630644 ATCCGATGGTGCTTATTCAGAT 57.369 40.909 0.00 0.00 0.00 2.90
2066 2206 3.995199 TCCGATGGTGCTTATTCAGATC 58.005 45.455 0.00 0.00 0.00 2.75
2067 2207 3.643320 TCCGATGGTGCTTATTCAGATCT 59.357 43.478 0.00 0.00 0.00 2.75
2068 2208 4.101585 TCCGATGGTGCTTATTCAGATCTT 59.898 41.667 0.00 0.00 0.00 2.40
2069 2209 4.818546 CCGATGGTGCTTATTCAGATCTTT 59.181 41.667 0.00 0.00 0.00 2.52
2070 2210 5.277683 CCGATGGTGCTTATTCAGATCTTTG 60.278 44.000 0.00 0.00 0.00 2.77
2071 2211 5.295292 CGATGGTGCTTATTCAGATCTTTGT 59.705 40.000 0.00 0.00 0.00 2.83
2072 2212 6.479990 CGATGGTGCTTATTCAGATCTTTGTA 59.520 38.462 0.00 0.00 0.00 2.41
2073 2213 7.172190 CGATGGTGCTTATTCAGATCTTTGTAT 59.828 37.037 0.00 0.00 0.00 2.29
2074 2214 7.558161 TGGTGCTTATTCAGATCTTTGTATG 57.442 36.000 0.00 0.00 0.00 2.39
2075 2215 6.038603 TGGTGCTTATTCAGATCTTTGTATGC 59.961 38.462 0.00 1.26 0.00 3.14
2076 2216 6.261826 GGTGCTTATTCAGATCTTTGTATGCT 59.738 38.462 0.00 0.00 0.00 3.79
2077 2217 7.130917 GTGCTTATTCAGATCTTTGTATGCTG 58.869 38.462 0.00 0.00 0.00 4.41
2078 2218 6.825213 TGCTTATTCAGATCTTTGTATGCTGT 59.175 34.615 0.00 0.00 0.00 4.40
2079 2219 7.986889 TGCTTATTCAGATCTTTGTATGCTGTA 59.013 33.333 0.00 0.00 0.00 2.74
2080 2220 8.494347 GCTTATTCAGATCTTTGTATGCTGTAG 58.506 37.037 0.00 0.00 0.00 2.74
2081 2221 9.539825 CTTATTCAGATCTTTGTATGCTGTAGT 57.460 33.333 0.00 0.00 0.00 2.73
2082 2222 7.783090 ATTCAGATCTTTGTATGCTGTAGTG 57.217 36.000 0.00 0.00 0.00 2.74
2083 2223 6.530019 TCAGATCTTTGTATGCTGTAGTGA 57.470 37.500 0.00 0.00 0.00 3.41
2084 2224 6.567959 TCAGATCTTTGTATGCTGTAGTGAG 58.432 40.000 0.00 0.00 0.00 3.51
2085 2225 6.153510 TCAGATCTTTGTATGCTGTAGTGAGT 59.846 38.462 0.00 0.00 0.00 3.41
2086 2226 6.815641 CAGATCTTTGTATGCTGTAGTGAGTT 59.184 38.462 0.00 0.00 0.00 3.01
2087 2227 7.332926 CAGATCTTTGTATGCTGTAGTGAGTTT 59.667 37.037 0.00 0.00 0.00 2.66
2088 2228 7.880195 AGATCTTTGTATGCTGTAGTGAGTTTT 59.120 33.333 0.00 0.00 0.00 2.43
2089 2229 9.151471 GATCTTTGTATGCTGTAGTGAGTTTTA 57.849 33.333 0.00 0.00 0.00 1.52
2090 2230 8.534333 TCTTTGTATGCTGTAGTGAGTTTTAG 57.466 34.615 0.00 0.00 0.00 1.85
2091 2231 8.364894 TCTTTGTATGCTGTAGTGAGTTTTAGA 58.635 33.333 0.00 0.00 0.00 2.10
2092 2232 8.534333 TTTGTATGCTGTAGTGAGTTTTAGAG 57.466 34.615 0.00 0.00 0.00 2.43
2093 2233 6.631016 TGTATGCTGTAGTGAGTTTTAGAGG 58.369 40.000 0.00 0.00 0.00 3.69
2094 2234 6.436218 TGTATGCTGTAGTGAGTTTTAGAGGA 59.564 38.462 0.00 0.00 0.00 3.71
2095 2235 5.392767 TGCTGTAGTGAGTTTTAGAGGAG 57.607 43.478 0.00 0.00 0.00 3.69
2096 2236 4.833380 TGCTGTAGTGAGTTTTAGAGGAGT 59.167 41.667 0.00 0.00 0.00 3.85
2097 2237 5.047943 TGCTGTAGTGAGTTTTAGAGGAGTC 60.048 44.000 0.00 0.00 0.00 3.36
2098 2238 5.047943 GCTGTAGTGAGTTTTAGAGGAGTCA 60.048 44.000 0.00 0.00 0.00 3.41
2099 2239 6.516860 GCTGTAGTGAGTTTTAGAGGAGTCAA 60.517 42.308 0.00 0.00 0.00 3.18
2100 2240 7.356089 TGTAGTGAGTTTTAGAGGAGTCAAA 57.644 36.000 0.00 0.00 0.00 2.69
2101 2241 7.208080 TGTAGTGAGTTTTAGAGGAGTCAAAC 58.792 38.462 0.00 0.00 0.00 2.93
2102 2242 5.612351 AGTGAGTTTTAGAGGAGTCAAACC 58.388 41.667 0.00 0.00 30.72 3.27
2103 2243 5.367060 AGTGAGTTTTAGAGGAGTCAAACCT 59.633 40.000 0.00 0.00 40.80 3.50
2132 2272 8.833231 TTTTTACTTGTTGTTTGGTCATTGAA 57.167 26.923 0.00 0.00 0.00 2.69
2133 2273 8.833231 TTTTACTTGTTGTTTGGTCATTGAAA 57.167 26.923 0.00 0.00 0.00 2.69
2134 2274 8.833231 TTTACTTGTTGTTTGGTCATTGAAAA 57.167 26.923 0.00 0.00 0.00 2.29
2135 2275 8.833231 TTACTTGTTGTTTGGTCATTGAAAAA 57.167 26.923 0.00 0.00 0.00 1.94
2157 2297 8.953368 AAAAATTCTCAAGACTGCAGATTTTT 57.047 26.923 23.35 20.00 33.94 1.94
2181 2321 8.458573 TTTTTACTTTGGTTGCTATCTCAGAA 57.541 30.769 0.00 0.00 0.00 3.02
2182 2322 8.635765 TTTTACTTTGGTTGCTATCTCAGAAT 57.364 30.769 0.00 0.00 0.00 2.40
2183 2323 9.733556 TTTTACTTTGGTTGCTATCTCAGAATA 57.266 29.630 0.00 0.00 0.00 1.75
2184 2324 9.733556 TTTACTTTGGTTGCTATCTCAGAATAA 57.266 29.630 0.00 0.00 0.00 1.40
2185 2325 7.856145 ACTTTGGTTGCTATCTCAGAATAAG 57.144 36.000 0.00 0.00 0.00 1.73
2186 2326 7.624549 ACTTTGGTTGCTATCTCAGAATAAGA 58.375 34.615 0.00 0.00 0.00 2.10
2187 2327 8.270744 ACTTTGGTTGCTATCTCAGAATAAGAT 58.729 33.333 0.00 0.00 37.29 2.40
2188 2328 9.770097 CTTTGGTTGCTATCTCAGAATAAGATA 57.230 33.333 0.00 0.00 35.20 1.98
2191 2331 9.716531 TGGTTGCTATCTCAGAATAAGATAATG 57.283 33.333 0.00 0.00 35.78 1.90
2192 2332 9.935241 GGTTGCTATCTCAGAATAAGATAATGA 57.065 33.333 0.00 0.00 35.78 2.57
2194 2334 9.935241 TTGCTATCTCAGAATAAGATAATGACC 57.065 33.333 0.00 0.00 35.78 4.02
2195 2335 9.093458 TGCTATCTCAGAATAAGATAATGACCA 57.907 33.333 0.00 0.00 35.78 4.02
2196 2336 9.585099 GCTATCTCAGAATAAGATAATGACCAG 57.415 37.037 0.00 0.00 35.78 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.579429 GCGGTCGGCAAAGACATTT 59.421 52.632 8.17 0.00 42.62 2.32
2 3 2.677003 CGCGGTCGGCAAAGACATT 61.677 57.895 0.00 0.00 43.84 2.71
3 4 3.118454 CGCGGTCGGCAAAGACAT 61.118 61.111 0.00 0.00 43.84 3.06
4 5 4.595538 ACGCGGTCGGCAAAGACA 62.596 61.111 12.47 0.00 43.84 3.41
5 6 4.072088 CACGCGGTCGGCAAAGAC 62.072 66.667 12.47 0.00 43.84 3.01
6 7 4.595538 ACACGCGGTCGGCAAAGA 62.596 61.111 12.47 0.00 43.84 2.52
7 8 3.645975 AACACGCGGTCGGCAAAG 61.646 61.111 12.47 0.00 43.84 2.77
8 9 3.943034 CAACACGCGGTCGGCAAA 61.943 61.111 12.47 0.00 43.84 3.68
9 10 3.786901 TACAACACGCGGTCGGCAA 62.787 57.895 12.47 0.00 43.84 4.52
10 11 3.786901 TTACAACACGCGGTCGGCA 62.787 57.895 12.47 0.00 43.84 5.69
11 12 3.007070 CTTACAACACGCGGTCGGC 62.007 63.158 12.47 0.00 40.69 5.54
12 13 3.007070 GCTTACAACACGCGGTCGG 62.007 63.158 12.47 4.58 40.69 4.79
13 14 2.468532 GCTTACAACACGCGGTCG 59.531 61.111 12.47 0.00 42.43 4.79
14 15 2.858158 GGCTTACAACACGCGGTC 59.142 61.111 12.47 0.00 0.00 4.79
15 16 3.039588 CGGCTTACAACACGCGGT 61.040 61.111 12.47 2.05 0.00 5.68
16 17 3.784412 CCGGCTTACAACACGCGG 61.784 66.667 12.47 1.27 0.00 6.46
17 18 3.784412 CCCGGCTTACAACACGCG 61.784 66.667 3.53 3.53 0.00 6.01
18 19 2.667199 ACCCGGCTTACAACACGC 60.667 61.111 0.00 0.00 0.00 5.34
19 20 2.961669 GCACCCGGCTTACAACACG 61.962 63.158 0.00 0.00 40.25 4.49
20 21 2.951458 GCACCCGGCTTACAACAC 59.049 61.111 0.00 0.00 40.25 3.32
29 30 0.891904 TACTGGAAAAAGCACCCGGC 60.892 55.000 0.00 0.00 45.30 6.13
30 31 1.165270 CTACTGGAAAAAGCACCCGG 58.835 55.000 0.00 0.00 0.00 5.73
31 32 2.178912 TCTACTGGAAAAAGCACCCG 57.821 50.000 0.00 0.00 0.00 5.28
32 33 4.511826 CGATATCTACTGGAAAAAGCACCC 59.488 45.833 0.34 0.00 0.00 4.61
33 34 5.006746 CACGATATCTACTGGAAAAAGCACC 59.993 44.000 0.34 0.00 0.00 5.01
34 35 5.581085 ACACGATATCTACTGGAAAAAGCAC 59.419 40.000 0.34 0.00 0.00 4.40
35 36 5.580691 CACACGATATCTACTGGAAAAAGCA 59.419 40.000 0.34 0.00 0.00 3.91
36 37 5.502544 GCACACGATATCTACTGGAAAAAGC 60.503 44.000 0.34 0.00 0.00 3.51
37 38 5.812642 AGCACACGATATCTACTGGAAAAAG 59.187 40.000 0.34 0.00 0.00 2.27
38 39 5.730550 AGCACACGATATCTACTGGAAAAA 58.269 37.500 0.34 0.00 0.00 1.94
39 40 5.339008 AGCACACGATATCTACTGGAAAA 57.661 39.130 0.34 0.00 0.00 2.29
40 41 4.202121 GGAGCACACGATATCTACTGGAAA 60.202 45.833 0.34 0.00 0.00 3.13
41 42 3.318275 GGAGCACACGATATCTACTGGAA 59.682 47.826 0.34 0.00 0.00 3.53
42 43 2.885266 GGAGCACACGATATCTACTGGA 59.115 50.000 0.34 0.00 0.00 3.86
43 44 2.029828 GGGAGCACACGATATCTACTGG 60.030 54.545 0.34 0.00 0.00 4.00
44 45 2.887783 AGGGAGCACACGATATCTACTG 59.112 50.000 0.34 0.00 0.00 2.74
45 46 2.887783 CAGGGAGCACACGATATCTACT 59.112 50.000 0.34 0.00 0.00 2.57
46 47 2.623889 ACAGGGAGCACACGATATCTAC 59.376 50.000 0.34 0.00 0.00 2.59
47 48 2.945456 ACAGGGAGCACACGATATCTA 58.055 47.619 0.34 0.00 0.00 1.98
48 49 1.781786 ACAGGGAGCACACGATATCT 58.218 50.000 0.34 0.00 0.00 1.98
49 50 3.643763 CTTACAGGGAGCACACGATATC 58.356 50.000 0.00 0.00 0.00 1.63
50 51 2.224066 GCTTACAGGGAGCACACGATAT 60.224 50.000 0.00 0.00 39.89 1.63
51 52 1.136305 GCTTACAGGGAGCACACGATA 59.864 52.381 0.00 0.00 39.89 2.92
52 53 0.108138 GCTTACAGGGAGCACACGAT 60.108 55.000 0.00 0.00 39.89 3.73
53 54 1.292223 GCTTACAGGGAGCACACGA 59.708 57.895 0.00 0.00 39.89 4.35
54 55 1.741770 GGCTTACAGGGAGCACACG 60.742 63.158 0.00 0.00 41.89 4.49
55 56 1.741770 CGGCTTACAGGGAGCACAC 60.742 63.158 0.00 0.00 41.89 3.82
56 57 1.888436 CTCGGCTTACAGGGAGCACA 61.888 60.000 0.00 0.00 41.89 4.57
57 58 1.153549 CTCGGCTTACAGGGAGCAC 60.154 63.158 0.00 0.00 41.89 4.40
58 59 1.304962 TCTCGGCTTACAGGGAGCA 60.305 57.895 0.00 0.00 41.89 4.26
59 60 1.324005 ACTCTCGGCTTACAGGGAGC 61.324 60.000 0.00 0.00 39.41 4.70
60 61 1.187087 AACTCTCGGCTTACAGGGAG 58.813 55.000 0.00 0.00 0.00 4.30
61 62 1.640917 AAACTCTCGGCTTACAGGGA 58.359 50.000 0.00 0.00 0.00 4.20
62 63 2.474410 AAAACTCTCGGCTTACAGGG 57.526 50.000 0.00 0.00 0.00 4.45
85 86 3.003275 CCTCTAAGCGAGTGTTGCAAAAA 59.997 43.478 0.00 0.00 38.11 1.94
86 87 2.548057 CCTCTAAGCGAGTGTTGCAAAA 59.452 45.455 0.00 0.00 38.11 2.44
87 88 2.143122 CCTCTAAGCGAGTGTTGCAAA 58.857 47.619 0.00 0.00 38.11 3.68
88 89 1.343142 TCCTCTAAGCGAGTGTTGCAA 59.657 47.619 0.00 0.00 38.11 4.08
89 90 0.966179 TCCTCTAAGCGAGTGTTGCA 59.034 50.000 0.00 0.00 38.11 4.08
90 91 1.727335 GTTCCTCTAAGCGAGTGTTGC 59.273 52.381 0.00 0.00 38.11 4.17
91 92 3.026630 TGTTCCTCTAAGCGAGTGTTG 57.973 47.619 0.00 0.00 38.11 3.33
92 93 3.963428 ATGTTCCTCTAAGCGAGTGTT 57.037 42.857 0.00 0.00 38.11 3.32
93 94 3.381908 CCTATGTTCCTCTAAGCGAGTGT 59.618 47.826 0.00 0.00 38.11 3.55
94 95 3.381908 ACCTATGTTCCTCTAAGCGAGTG 59.618 47.826 0.00 0.00 38.11 3.51
95 96 3.633065 GACCTATGTTCCTCTAAGCGAGT 59.367 47.826 0.00 0.00 38.11 4.18
96 97 3.304123 CGACCTATGTTCCTCTAAGCGAG 60.304 52.174 0.00 0.00 39.57 5.03
97 98 2.617308 CGACCTATGTTCCTCTAAGCGA 59.383 50.000 0.00 0.00 0.00 4.93
98 99 2.617308 TCGACCTATGTTCCTCTAAGCG 59.383 50.000 0.00 0.00 0.00 4.68
99 100 3.633065 ACTCGACCTATGTTCCTCTAAGC 59.367 47.826 0.00 0.00 0.00 3.09
100 101 5.239087 GGTACTCGACCTATGTTCCTCTAAG 59.761 48.000 0.00 0.00 45.89 2.18
101 102 5.128919 GGTACTCGACCTATGTTCCTCTAA 58.871 45.833 0.00 0.00 45.89 2.10
102 103 4.712476 GGTACTCGACCTATGTTCCTCTA 58.288 47.826 0.00 0.00 45.89 2.43
103 104 3.553904 GGTACTCGACCTATGTTCCTCT 58.446 50.000 0.00 0.00 45.89 3.69
104 105 3.986442 GGTACTCGACCTATGTTCCTC 57.014 52.381 0.00 0.00 45.89 3.71
115 116 4.101235 GAGTTAATGTTCGGGTACTCGAC 58.899 47.826 19.43 13.57 39.01 4.20
116 117 3.758023 TGAGTTAATGTTCGGGTACTCGA 59.242 43.478 15.28 15.28 35.85 4.04
117 118 4.100707 TGAGTTAATGTTCGGGTACTCG 57.899 45.455 9.43 9.43 35.85 4.18
118 119 4.430908 CCTGAGTTAATGTTCGGGTACTC 58.569 47.826 0.00 0.00 35.53 2.59
119 120 3.197116 CCCTGAGTTAATGTTCGGGTACT 59.803 47.826 10.01 0.00 38.03 2.73
120 121 3.528532 CCCTGAGTTAATGTTCGGGTAC 58.471 50.000 10.01 0.00 38.03 3.34
121 122 2.093341 GCCCTGAGTTAATGTTCGGGTA 60.093 50.000 10.01 0.00 38.03 3.69
122 123 1.339727 GCCCTGAGTTAATGTTCGGGT 60.340 52.381 10.01 0.00 38.03 5.28
123 124 1.065418 AGCCCTGAGTTAATGTTCGGG 60.065 52.381 0.00 0.00 39.19 5.14
124 125 2.403252 AGCCCTGAGTTAATGTTCGG 57.597 50.000 0.00 0.00 0.00 4.30
125 126 5.696724 CCTATAAGCCCTGAGTTAATGTTCG 59.303 44.000 0.00 0.00 0.00 3.95
126 127 5.470437 GCCTATAAGCCCTGAGTTAATGTTC 59.530 44.000 0.00 0.00 0.00 3.18
127 128 5.132816 AGCCTATAAGCCCTGAGTTAATGTT 59.867 40.000 0.00 0.00 0.00 2.71
128 129 4.660771 AGCCTATAAGCCCTGAGTTAATGT 59.339 41.667 0.00 0.00 0.00 2.71
129 130 5.234466 AGCCTATAAGCCCTGAGTTAATG 57.766 43.478 0.00 0.00 0.00 1.90
130 131 6.329197 TGTTAGCCTATAAGCCCTGAGTTAAT 59.671 38.462 0.00 0.00 0.00 1.40
131 132 5.664006 TGTTAGCCTATAAGCCCTGAGTTAA 59.336 40.000 0.00 0.00 0.00 2.01
132 133 5.070047 GTGTTAGCCTATAAGCCCTGAGTTA 59.930 44.000 0.00 0.00 0.00 2.24
133 134 4.037927 TGTTAGCCTATAAGCCCTGAGTT 58.962 43.478 0.00 0.00 0.00 3.01
134 135 3.388350 GTGTTAGCCTATAAGCCCTGAGT 59.612 47.826 0.00 0.00 0.00 3.41
135 136 3.388024 TGTGTTAGCCTATAAGCCCTGAG 59.612 47.826 0.00 0.00 0.00 3.35
136 137 3.134081 GTGTGTTAGCCTATAAGCCCTGA 59.866 47.826 0.00 0.00 0.00 3.86
137 138 3.467803 GTGTGTTAGCCTATAAGCCCTG 58.532 50.000 0.00 0.00 0.00 4.45
138 139 2.102588 CGTGTGTTAGCCTATAAGCCCT 59.897 50.000 0.00 0.00 0.00 5.19
139 140 2.480845 CGTGTGTTAGCCTATAAGCCC 58.519 52.381 0.00 0.00 0.00 5.19
140 141 2.480845 CCGTGTGTTAGCCTATAAGCC 58.519 52.381 0.00 0.00 0.00 4.35
141 142 2.101917 TCCCGTGTGTTAGCCTATAAGC 59.898 50.000 0.00 0.00 0.00 3.09
142 143 4.395959 TTCCCGTGTGTTAGCCTATAAG 57.604 45.455 0.00 0.00 0.00 1.73
143 144 4.822685 TTTCCCGTGTGTTAGCCTATAA 57.177 40.909 0.00 0.00 0.00 0.98
144 145 4.506758 GTTTTCCCGTGTGTTAGCCTATA 58.493 43.478 0.00 0.00 0.00 1.31
145 146 3.340928 GTTTTCCCGTGTGTTAGCCTAT 58.659 45.455 0.00 0.00 0.00 2.57
146 147 2.769893 GTTTTCCCGTGTGTTAGCCTA 58.230 47.619 0.00 0.00 0.00 3.93
147 148 1.601166 GTTTTCCCGTGTGTTAGCCT 58.399 50.000 0.00 0.00 0.00 4.58
148 149 0.236449 CGTTTTCCCGTGTGTTAGCC 59.764 55.000 0.00 0.00 0.00 3.93
149 150 0.236449 CCGTTTTCCCGTGTGTTAGC 59.764 55.000 0.00 0.00 0.00 3.09
150 151 1.868469 TCCGTTTTCCCGTGTGTTAG 58.132 50.000 0.00 0.00 0.00 2.34
151 152 2.322355 TTCCGTTTTCCCGTGTGTTA 57.678 45.000 0.00 0.00 0.00 2.41
152 153 1.682740 ATTCCGTTTTCCCGTGTGTT 58.317 45.000 0.00 0.00 0.00 3.32
153 154 1.682740 AATTCCGTTTTCCCGTGTGT 58.317 45.000 0.00 0.00 0.00 3.72
154 155 2.785713 AAATTCCGTTTTCCCGTGTG 57.214 45.000 0.00 0.00 0.00 3.82
155 156 3.358707 GAAAATTCCGTTTTCCCGTGT 57.641 42.857 2.64 0.00 46.44 4.49
196 197 5.478679 TGAAGACAAGGGTTTCAAAACTTGA 59.521 36.000 18.06 0.00 38.89 3.02
197 198 5.719173 TGAAGACAAGGGTTTCAAAACTTG 58.281 37.500 12.15 12.15 38.89 3.16
198 199 5.993748 TGAAGACAAGGGTTTCAAAACTT 57.006 34.783 5.66 0.00 38.89 2.66
199 200 6.544928 AATGAAGACAAGGGTTTCAAAACT 57.455 33.333 5.66 0.00 38.89 2.66
200 201 8.887036 AATAATGAAGACAAGGGTTTCAAAAC 57.113 30.769 0.00 0.00 34.80 2.43
201 202 9.898152 AAAATAATGAAGACAAGGGTTTCAAAA 57.102 25.926 0.00 0.00 34.80 2.44
202 203 9.323985 CAAAATAATGAAGACAAGGGTTTCAAA 57.676 29.630 0.00 0.00 34.80 2.69
203 204 8.482128 ACAAAATAATGAAGACAAGGGTTTCAA 58.518 29.630 0.00 0.00 34.80 2.69
204 205 8.017418 ACAAAATAATGAAGACAAGGGTTTCA 57.983 30.769 0.00 0.00 35.52 2.69
205 206 9.626045 CTACAAAATAATGAAGACAAGGGTTTC 57.374 33.333 0.00 0.00 0.00 2.78
206 207 8.088365 GCTACAAAATAATGAAGACAAGGGTTT 58.912 33.333 0.00 0.00 0.00 3.27
207 208 7.309805 GGCTACAAAATAATGAAGACAAGGGTT 60.310 37.037 0.00 0.00 0.00 4.11
208 209 6.152831 GGCTACAAAATAATGAAGACAAGGGT 59.847 38.462 0.00 0.00 0.00 4.34
209 210 6.152661 TGGCTACAAAATAATGAAGACAAGGG 59.847 38.462 0.00 0.00 0.00 3.95
210 211 7.156876 TGGCTACAAAATAATGAAGACAAGG 57.843 36.000 0.00 0.00 0.00 3.61
211 212 9.643693 AATTGGCTACAAAATAATGAAGACAAG 57.356 29.630 0.00 0.00 40.55 3.16
212 213 9.421806 CAATTGGCTACAAAATAATGAAGACAA 57.578 29.630 0.00 0.00 40.55 3.18
213 214 8.801299 TCAATTGGCTACAAAATAATGAAGACA 58.199 29.630 5.42 0.00 40.55 3.41
214 215 9.294030 CTCAATTGGCTACAAAATAATGAAGAC 57.706 33.333 5.42 0.00 40.55 3.01
215 216 7.975616 GCTCAATTGGCTACAAAATAATGAAGA 59.024 33.333 5.42 0.00 40.55 2.87
216 217 7.043854 CGCTCAATTGGCTACAAAATAATGAAG 60.044 37.037 5.42 0.00 40.55 3.02
217 218 6.751425 CGCTCAATTGGCTACAAAATAATGAA 59.249 34.615 5.42 0.00 40.55 2.57
218 219 6.264832 CGCTCAATTGGCTACAAAATAATGA 58.735 36.000 5.42 0.00 40.55 2.57
219 220 5.459762 CCGCTCAATTGGCTACAAAATAATG 59.540 40.000 5.42 0.00 40.55 1.90
220 221 5.591099 CCGCTCAATTGGCTACAAAATAAT 58.409 37.500 5.42 0.00 40.55 1.28
221 222 4.992688 CCGCTCAATTGGCTACAAAATAA 58.007 39.130 5.42 0.00 40.55 1.40
222 223 4.630894 CCGCTCAATTGGCTACAAAATA 57.369 40.909 5.42 0.00 40.55 1.40
223 224 3.508744 CCGCTCAATTGGCTACAAAAT 57.491 42.857 5.42 0.00 40.55 1.82
232 233 2.264813 CAAATGAAGCCGCTCAATTGG 58.735 47.619 5.42 0.00 34.10 3.16
233 234 2.264813 CCAAATGAAGCCGCTCAATTG 58.735 47.619 0.00 0.00 36.42 2.32
234 235 1.205417 CCCAAATGAAGCCGCTCAATT 59.795 47.619 0.00 0.00 0.00 2.32
235 236 0.819582 CCCAAATGAAGCCGCTCAAT 59.180 50.000 0.00 0.00 0.00 2.57
236 237 0.251121 TCCCAAATGAAGCCGCTCAA 60.251 50.000 0.00 0.00 0.00 3.02
237 238 0.034186 ATCCCAAATGAAGCCGCTCA 60.034 50.000 0.00 0.00 0.00 4.26
238 239 0.665298 GATCCCAAATGAAGCCGCTC 59.335 55.000 0.00 0.00 0.00 5.03
239 240 0.034186 TGATCCCAAATGAAGCCGCT 60.034 50.000 0.00 0.00 0.00 5.52
240 241 0.101219 GTGATCCCAAATGAAGCCGC 59.899 55.000 0.00 0.00 0.00 6.53
287 288 5.398169 TGCGTGATCGAAATTGCTAAATTT 58.602 33.333 0.00 0.00 46.37 1.82
316 317 1.025812 CCCTGCCTAGACAGTAGACG 58.974 60.000 5.27 0.00 35.83 4.18
317 318 0.747852 GCCCTGCCTAGACAGTAGAC 59.252 60.000 5.27 0.00 35.83 2.59
318 319 0.335019 TGCCCTGCCTAGACAGTAGA 59.665 55.000 5.27 0.00 35.83 2.59
319 320 1.418334 ATGCCCTGCCTAGACAGTAG 58.582 55.000 5.27 0.00 35.83 2.57
320 321 1.486310 CAATGCCCTGCCTAGACAGTA 59.514 52.381 5.27 0.00 35.83 2.74
321 322 0.254178 CAATGCCCTGCCTAGACAGT 59.746 55.000 5.27 0.00 35.83 3.55
322 323 0.465097 CCAATGCCCTGCCTAGACAG 60.465 60.000 0.00 0.00 37.42 3.51
384 385 1.369839 TTGCCGCGTTTGAAGTGTGA 61.370 50.000 4.92 0.00 0.00 3.58
386 387 0.248458 CTTTGCCGCGTTTGAAGTGT 60.248 50.000 4.92 0.00 0.00 3.55
387 388 0.248458 ACTTTGCCGCGTTTGAAGTG 60.248 50.000 4.92 0.00 0.00 3.16
404 415 9.157104 ACGTATCAAAAATTCCAAAACAAAACT 57.843 25.926 0.00 0.00 0.00 2.66
432 443 9.872721 TGGACACATGACGTTAAAATATACTAA 57.127 29.630 0.00 0.00 0.00 2.24
433 444 9.872721 TTGGACACATGACGTTAAAATATACTA 57.127 29.630 0.00 0.00 0.00 1.82
464 519 2.948979 TGGCCATAACGAAATCACCATC 59.051 45.455 0.00 0.00 0.00 3.51
469 535 3.380004 GGACATTGGCCATAACGAAATCA 59.620 43.478 6.09 0.00 0.00 2.57
477 543 3.289836 CATCACTGGACATTGGCCATAA 58.710 45.455 12.78 0.58 34.33 1.90
485 551 2.813754 CAACGAACCATCACTGGACATT 59.186 45.455 0.00 0.00 46.37 2.71
488 554 0.517316 GCAACGAACCATCACTGGAC 59.483 55.000 0.00 0.00 46.37 4.02
496 562 0.249953 TGTACACCGCAACGAACCAT 60.250 50.000 0.00 0.00 0.00 3.55
522 588 9.650539 TTGTCTTCTTTGAAAAACATTCATGAA 57.349 25.926 11.26 11.26 0.00 2.57
550 619 1.607628 GCCATGGACAGCTCATGATTC 59.392 52.381 18.40 0.00 43.25 2.52
576 645 2.501223 ATTGTGGTGCTGCATGCTGC 62.501 55.000 34.74 34.74 45.29 5.25
580 649 1.447140 GGCATTGTGGTGCTGCATG 60.447 57.895 5.27 0.00 44.45 4.06
586 655 0.179089 TTGTGTTGGCATTGTGGTGC 60.179 50.000 0.00 0.00 44.31 5.01
725 797 2.514592 CGGGGTGCTGCATACTGG 60.515 66.667 5.27 0.00 0.00 4.00
729 801 1.074072 AAACACGGGGTGCTGCATA 59.926 52.632 5.27 0.00 36.98 3.14
731 803 3.215568 CAAACACGGGGTGCTGCA 61.216 61.111 0.00 0.00 36.98 4.41
732 804 4.645921 GCAAACACGGGGTGCTGC 62.646 66.667 8.24 0.00 38.09 5.25
733 805 2.780094 TTGCAAACACGGGGTGCTG 61.780 57.895 15.52 0.00 39.09 4.41
734 806 2.441164 TTGCAAACACGGGGTGCT 60.441 55.556 15.52 0.00 39.09 4.40
799 907 1.310216 GCGCGTGATTAGGGGGTTTT 61.310 55.000 8.43 0.00 0.00 2.43
836 944 2.161609 GGGTGCTTGGAGATTACGTTTG 59.838 50.000 0.00 0.00 0.00 2.93
1057 1169 1.793258 GATGCGACCATGATCAGGAG 58.207 55.000 9.37 1.55 0.00 3.69
1217 1329 2.681778 AGGAGAGCGACCCCACAG 60.682 66.667 0.00 0.00 0.00 3.66
1251 1363 4.863689 CAGTAGAATCTGTGCTCACTTCAG 59.136 45.833 0.00 0.00 0.00 3.02
1265 1377 5.127693 ACGTATGCAGATCCAGTAGAATC 57.872 43.478 0.00 0.00 0.00 2.52
1286 1398 3.754188 AAGCAGCAGAATCATTTCGAC 57.246 42.857 0.00 0.00 36.93 4.20
1307 1419 9.297586 GTTCTGAAACATATATAGACACGTGAA 57.702 33.333 25.01 7.55 35.36 3.18
1354 1467 3.131933 CCCAAGGTTTCACATCACAACAA 59.868 43.478 0.00 0.00 0.00 2.83
1398 1512 5.957842 ACAAAACAACTGAGAACTGACAA 57.042 34.783 0.00 0.00 0.00 3.18
1539 1669 8.327429 CAATGTGTTTTCTTTATTTTTCAGCGT 58.673 29.630 0.00 0.00 0.00 5.07
1580 1710 1.680249 GGCAGGAAGGAGACAATCACC 60.680 57.143 0.00 0.00 0.00 4.02
1581 1711 1.743996 GGCAGGAAGGAGACAATCAC 58.256 55.000 0.00 0.00 0.00 3.06
1632 1762 1.019278 GCTGGCGACGATGGAGAAAA 61.019 55.000 0.00 0.00 0.00 2.29
1658 1788 4.327982 ACTTACCATCCATGATCGACAG 57.672 45.455 0.00 0.00 0.00 3.51
1675 1805 2.093341 GGGACGTGGCCTTGATTACTTA 60.093 50.000 3.32 0.00 0.00 2.24
1687 1817 2.513897 GTATGGCAGGGACGTGGC 60.514 66.667 11.04 11.04 43.25 5.01
1737 1867 4.467084 TGTGGATCTTCCGGCGGC 62.467 66.667 23.83 6.49 40.17 6.53
1739 1869 2.202932 CCTGTGGATCTTCCGGCG 60.203 66.667 0.00 0.00 40.17 6.46
1740 1870 2.514824 GCCTGTGGATCTTCCGGC 60.515 66.667 0.00 7.16 40.17 6.13
1741 1871 2.190578 GGCCTGTGGATCTTCCGG 59.809 66.667 0.00 0.00 40.17 5.14
1743 1873 1.134068 GTTAGGGCCTGTGGATCTTCC 60.134 57.143 18.53 0.00 36.96 3.46
1756 1886 5.702266 AGGTAATATTTTGGAGGTTAGGGC 58.298 41.667 0.00 0.00 0.00 5.19
1771 1901 8.511126 ACAAGTAATTTGGGATGGAGGTAATAT 58.489 33.333 0.00 0.00 41.25 1.28
1802 1932 9.178427 GTGTTAGATACCGTATGTAGACAAATC 57.822 37.037 0.00 0.00 31.61 2.17
1803 1933 8.910944 AGTGTTAGATACCGTATGTAGACAAAT 58.089 33.333 0.00 0.00 31.61 2.32
1896 2030 6.537660 CCGTCCCGAATTACTTCTTTTAGATT 59.462 38.462 0.00 0.00 0.00 2.40
1903 2037 2.167900 CCTCCGTCCCGAATTACTTCTT 59.832 50.000 0.00 0.00 0.00 2.52
1905 2039 1.202498 CCCTCCGTCCCGAATTACTTC 60.202 57.143 0.00 0.00 0.00 3.01
1915 2049 1.382692 CGAACTAGTCCCTCCGTCCC 61.383 65.000 0.00 0.00 0.00 4.46
1917 2051 1.939255 CTACGAACTAGTCCCTCCGTC 59.061 57.143 0.00 0.00 0.00 4.79
1927 2061 3.570125 TGATCATGAGGCCTACGAACTAG 59.430 47.826 4.42 0.00 0.00 2.57
1933 2067 1.202417 ACGTTGATCATGAGGCCTACG 60.202 52.381 16.73 16.73 34.85 3.51
1941 2075 3.321968 CCTCCCTATCACGTTGATCATGA 59.678 47.826 0.00 0.00 38.26 3.07
1942 2076 3.321968 TCCTCCCTATCACGTTGATCATG 59.678 47.826 0.00 0.00 38.26 3.07
1944 2078 2.959030 CTCCTCCCTATCACGTTGATCA 59.041 50.000 0.00 0.00 38.26 2.92
1948 2088 1.409427 GACCTCCTCCCTATCACGTTG 59.591 57.143 0.00 0.00 0.00 4.10
1951 2091 1.776662 TTGACCTCCTCCCTATCACG 58.223 55.000 0.00 0.00 0.00 4.35
2001 2141 0.320421 CGTGGGTTTCTCGGTGTGAT 60.320 55.000 0.00 0.00 0.00 3.06
2006 2146 2.424302 CCACGTGGGTTTCTCGGT 59.576 61.111 27.57 0.00 36.76 4.69
2037 2177 0.615331 AGCACCATCGGATTCACACT 59.385 50.000 0.00 0.00 0.00 3.55
2047 2187 5.295292 ACAAAGATCTGAATAAGCACCATCG 59.705 40.000 0.00 0.00 0.00 3.84
2048 2188 6.690194 ACAAAGATCTGAATAAGCACCATC 57.310 37.500 0.00 0.00 0.00 3.51
2055 2195 9.539825 ACTACAGCATACAAAGATCTGAATAAG 57.460 33.333 0.00 0.00 0.00 1.73
2058 2198 7.559486 TCACTACAGCATACAAAGATCTGAAT 58.441 34.615 0.00 0.00 0.00 2.57
2061 2201 6.336566 ACTCACTACAGCATACAAAGATCTG 58.663 40.000 0.00 0.00 0.00 2.90
2062 2202 6.537453 ACTCACTACAGCATACAAAGATCT 57.463 37.500 0.00 0.00 0.00 2.75
2063 2203 7.602517 AAACTCACTACAGCATACAAAGATC 57.397 36.000 0.00 0.00 0.00 2.75
2064 2204 7.986085 AAAACTCACTACAGCATACAAAGAT 57.014 32.000 0.00 0.00 0.00 2.40
2065 2205 8.364894 TCTAAAACTCACTACAGCATACAAAGA 58.635 33.333 0.00 0.00 0.00 2.52
2066 2206 8.534333 TCTAAAACTCACTACAGCATACAAAG 57.466 34.615 0.00 0.00 0.00 2.77
2067 2207 7.602644 CCTCTAAAACTCACTACAGCATACAAA 59.397 37.037 0.00 0.00 0.00 2.83
2068 2208 7.039293 TCCTCTAAAACTCACTACAGCATACAA 60.039 37.037 0.00 0.00 0.00 2.41
2069 2209 6.436218 TCCTCTAAAACTCACTACAGCATACA 59.564 38.462 0.00 0.00 0.00 2.29
2070 2210 6.864342 TCCTCTAAAACTCACTACAGCATAC 58.136 40.000 0.00 0.00 0.00 2.39
2071 2211 6.663953 ACTCCTCTAAAACTCACTACAGCATA 59.336 38.462 0.00 0.00 0.00 3.14
2072 2212 5.482175 ACTCCTCTAAAACTCACTACAGCAT 59.518 40.000 0.00 0.00 0.00 3.79
2073 2213 4.833380 ACTCCTCTAAAACTCACTACAGCA 59.167 41.667 0.00 0.00 0.00 4.41
2074 2214 5.047943 TGACTCCTCTAAAACTCACTACAGC 60.048 44.000 0.00 0.00 0.00 4.40
2075 2215 6.576662 TGACTCCTCTAAAACTCACTACAG 57.423 41.667 0.00 0.00 0.00 2.74
2076 2216 6.971726 TTGACTCCTCTAAAACTCACTACA 57.028 37.500 0.00 0.00 0.00 2.74
2077 2217 6.645827 GGTTTGACTCCTCTAAAACTCACTAC 59.354 42.308 0.00 0.00 33.90 2.73
2078 2218 6.553852 AGGTTTGACTCCTCTAAAACTCACTA 59.446 38.462 0.00 0.00 33.90 2.74
2079 2219 5.367060 AGGTTTGACTCCTCTAAAACTCACT 59.633 40.000 0.00 0.00 33.90 3.41
2080 2220 5.612351 AGGTTTGACTCCTCTAAAACTCAC 58.388 41.667 0.00 0.00 33.90 3.51
2081 2221 5.855045 GAGGTTTGACTCCTCTAAAACTCA 58.145 41.667 8.61 0.00 43.89 3.41
2107 2247 8.833231 TTCAATGACCAAACAACAAGTAAAAA 57.167 26.923 0.00 0.00 0.00 1.94
2108 2248 8.833231 TTTCAATGACCAAACAACAAGTAAAA 57.167 26.923 0.00 0.00 0.00 1.52
2109 2249 8.833231 TTTTCAATGACCAAACAACAAGTAAA 57.167 26.923 0.00 0.00 0.00 2.01
2110 2250 8.833231 TTTTTCAATGACCAAACAACAAGTAA 57.167 26.923 0.00 0.00 0.00 2.24
2132 2272 8.953368 AAAAATCTGCAGTCTTGAGAATTTTT 57.047 26.923 14.67 17.00 29.41 1.94
2156 2296 8.458573 TTCTGAGATAGCAACCAAAGTAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
2157 2297 8.635765 ATTCTGAGATAGCAACCAAAGTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
2158 2298 9.733556 TTATTCTGAGATAGCAACCAAAGTAAA 57.266 29.630 0.00 0.00 0.00 2.01
2159 2299 9.383519 CTTATTCTGAGATAGCAACCAAAGTAA 57.616 33.333 0.00 0.00 0.00 2.24
2160 2300 8.758829 TCTTATTCTGAGATAGCAACCAAAGTA 58.241 33.333 0.00 0.00 0.00 2.24
2161 2301 7.624549 TCTTATTCTGAGATAGCAACCAAAGT 58.375 34.615 0.00 0.00 0.00 2.66
2162 2302 8.674263 ATCTTATTCTGAGATAGCAACCAAAG 57.326 34.615 0.00 0.00 32.27 2.77
2165 2305 9.716531 CATTATCTTATTCTGAGATAGCAACCA 57.283 33.333 0.00 0.00 37.40 3.67
2166 2306 9.935241 TCATTATCTTATTCTGAGATAGCAACC 57.065 33.333 0.00 0.00 37.40 3.77
2168 2308 9.935241 GGTCATTATCTTATTCTGAGATAGCAA 57.065 33.333 0.00 0.00 37.40 3.91
2169 2309 9.093458 TGGTCATTATCTTATTCTGAGATAGCA 57.907 33.333 0.00 0.00 37.40 3.49
2170 2310 9.585099 CTGGTCATTATCTTATTCTGAGATAGC 57.415 37.037 0.00 0.00 37.40 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.