Multiple sequence alignment - TraesCS1A01G410400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G410400 chr1A 100.000 2492 0 0 1 2492 571681317 571678826 0.000000e+00 4602.0
1 TraesCS1A01G410400 chr1A 96.764 309 10 0 38 346 571717319 571717011 1.320000e-142 516.0
2 TraesCS1A01G410400 chr1A 93.226 310 20 1 38 346 222247394 222247085 2.920000e-124 455.0
3 TraesCS1A01G410400 chr1A 93.226 310 20 1 38 346 396945624 396945315 2.920000e-124 455.0
4 TraesCS1A01G410400 chr1A 91.429 105 8 1 345 449 394592730 394592833 2.580000e-30 143.0
5 TraesCS1A01G410400 chr1D 89.458 1034 59 20 782 1813 475826003 475825018 0.000000e+00 1260.0
6 TraesCS1A01G410400 chr1D 96.032 126 5 0 487 612 475840921 475840796 3.250000e-49 206.0
7 TraesCS1A01G410400 chr1D 89.032 155 12 3 2342 2492 475821056 475820903 1.180000e-43 187.0
8 TraesCS1A01G410400 chr1D 94.690 113 5 1 658 769 475826162 475826050 9.160000e-40 174.0
9 TraesCS1A01G410400 chr1D 89.516 124 11 2 2219 2341 475824999 475824877 3.320000e-34 156.0
10 TraesCS1A01G410400 chr1D 97.872 47 0 1 444 489 485373997 485373951 2.050000e-11 80.5
11 TraesCS1A01G410400 chr1B 89.474 684 34 14 824 1495 661901563 661900906 0.000000e+00 830.0
12 TraesCS1A01G410400 chr1B 98.387 124 1 1 633 755 661901683 661901560 1.500000e-52 217.0
13 TraesCS1A01G410400 chr1B 93.750 128 6 2 485 611 661902193 661902067 9.100000e-45 191.0
14 TraesCS1A01G410400 chr1B 95.918 49 1 1 444 491 15438576 15438528 7.390000e-11 78.7
15 TraesCS1A01G410400 chr3D 86.950 682 65 18 834 1505 48012729 48013396 0.000000e+00 745.0
16 TraesCS1A01G410400 chr3D 80.899 712 91 31 834 1515 48015633 48016329 1.020000e-143 520.0
17 TraesCS1A01G410400 chr3D 89.855 345 25 7 3 343 400497841 400498179 3.810000e-118 435.0
18 TraesCS1A01G410400 chr3D 80.410 536 69 19 985 1515 395052723 395052219 2.340000e-100 375.0
19 TraesCS1A01G410400 chr3D 92.593 162 12 0 454 615 48039938 48039777 1.490000e-57 233.0
20 TraesCS1A01G410400 chr3D 84.034 238 23 14 2068 2299 592809531 592809303 5.400000e-52 215.0
21 TraesCS1A01G410400 chr3D 91.429 70 1 3 1 70 355043907 355043843 9.490000e-15 91.6
22 TraesCS1A01G410400 chr3B 86.053 674 79 12 836 1505 75710445 75711107 0.000000e+00 710.0
23 TraesCS1A01G410400 chr3B 82.812 384 53 8 925 1302 519477202 519476826 5.140000e-87 331.0
24 TraesCS1A01G410400 chr3B 79.325 474 75 11 833 1302 519435569 519435115 6.690000e-81 311.0
25 TraesCS1A01G410400 chr3B 81.414 382 56 12 924 1298 519451154 519450781 5.210000e-77 298.0
26 TraesCS1A01G410400 chr3B 92.381 105 7 1 345 449 544546152 544546255 5.550000e-32 148.0
27 TraesCS1A01G410400 chr3A 86.418 589 63 13 930 1505 60242507 60243091 1.630000e-176 628.0
28 TraesCS1A01G410400 chr3A 80.328 671 89 30 869 1515 60250806 60251457 3.750000e-128 468.0
29 TraesCS1A01G410400 chr2A 94.822 309 16 0 38 346 233285140 233285448 1.340000e-132 483.0
30 TraesCS1A01G410400 chr2A 94.498 309 17 0 38 346 233342904 233343212 6.240000e-131 477.0
31 TraesCS1A01G410400 chr2A 91.589 107 7 2 345 449 619858131 619858025 2.000000e-31 147.0
32 TraesCS1A01G410400 chr7D 90.909 352 26 6 3 349 382993701 382993351 3.750000e-128 468.0
33 TraesCS1A01G410400 chr7D 78.378 370 52 22 831 1181 529040908 529040548 5.400000e-52 215.0
34 TraesCS1A01G410400 chr6D 89.916 357 30 6 3 356 106628122 106627769 2.920000e-124 455.0
35 TraesCS1A01G410400 chr6D 84.397 282 34 10 2068 2341 61168855 61169134 4.090000e-68 268.0
36 TraesCS1A01G410400 chr5D 92.971 313 20 2 3 313 56762762 56763074 2.920000e-124 455.0
37 TraesCS1A01G410400 chr5D 90.566 106 8 2 345 449 423970717 423970821 3.340000e-29 139.0
38 TraesCS1A01G410400 chr5D 91.429 70 1 3 1 70 201898089 201898153 9.490000e-15 91.6
39 TraesCS1A01G410400 chr5D 82.883 111 9 6 940 1040 366057193 366057083 9.490000e-15 91.6
40 TraesCS1A01G410400 chr5D 91.176 68 1 3 3 70 133675408 133675346 1.230000e-13 87.9
41 TraesCS1A01G410400 chr5D 94.231 52 1 2 444 494 49290791 49290841 7.390000e-11 78.7
42 TraesCS1A01G410400 chr7B 78.862 369 52 15 831 1181 566620416 566620056 2.490000e-55 226.0
43 TraesCS1A01G410400 chr7B 91.429 105 8 1 345 449 607933306 607933409 2.580000e-30 143.0
44 TraesCS1A01G410400 chr2D 81.786 280 33 9 940 1208 186351216 186350944 4.170000e-53 219.0
45 TraesCS1A01G410400 chr2D 83.594 128 18 3 345 471 564704114 564704239 1.570000e-22 117.0
46 TraesCS1A01G410400 chr7A 78.947 323 44 15 877 1181 608683383 608683067 5.440000e-47 198.0
47 TraesCS1A01G410400 chr7A 82.632 190 16 8 940 1119 158672764 158672946 4.290000e-33 152.0
48 TraesCS1A01G410400 chr7A 94.545 55 3 0 452 506 90304982 90305036 4.420000e-13 86.1
49 TraesCS1A01G410400 chr4D 89.231 130 9 5 345 472 68711109 68710983 9.230000e-35 158.0
50 TraesCS1A01G410400 chr2B 91.818 110 7 2 345 453 415997173 415997281 4.290000e-33 152.0
51 TraesCS1A01G410400 chr2B 95.918 49 1 1 444 491 92796904 92796856 7.390000e-11 78.7
52 TraesCS1A01G410400 chr4A 93.269 104 4 3 346 449 459671425 459671525 1.540000e-32 150.0
53 TraesCS1A01G410400 chr6A 89.474 114 10 1 345 456 606307132 606307019 2.580000e-30 143.0
54 TraesCS1A01G410400 chr4B 96.667 60 2 0 1 60 346496050 346495991 1.580000e-17 100.0
55 TraesCS1A01G410400 chr5B 91.429 70 1 3 1 70 456811437 456811373 9.490000e-15 91.6
56 TraesCS1A01G410400 chr5B 91.429 70 1 3 1 70 456818822 456818758 9.490000e-15 91.6
57 TraesCS1A01G410400 chr6B 91.379 58 2 3 444 499 65452547 65452491 2.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G410400 chr1A 571678826 571681317 2491 True 4602.000000 4602 100.000000 1 2492 1 chr1A.!!$R3 2491
1 TraesCS1A01G410400 chr1D 475820903 475826162 5259 True 444.250000 1260 90.674000 658 2492 4 chr1D.!!$R3 1834
2 TraesCS1A01G410400 chr1B 661900906 661902193 1287 True 412.666667 830 93.870333 485 1495 3 chr1B.!!$R2 1010
3 TraesCS1A01G410400 chr3D 48012729 48016329 3600 False 632.500000 745 83.924500 834 1515 2 chr3D.!!$F2 681
4 TraesCS1A01G410400 chr3D 395052219 395052723 504 True 375.000000 375 80.410000 985 1515 1 chr3D.!!$R3 530
5 TraesCS1A01G410400 chr3B 75710445 75711107 662 False 710.000000 710 86.053000 836 1505 1 chr3B.!!$F1 669
6 TraesCS1A01G410400 chr3A 60242507 60243091 584 False 628.000000 628 86.418000 930 1505 1 chr3A.!!$F1 575
7 TraesCS1A01G410400 chr3A 60250806 60251457 651 False 468.000000 468 80.328000 869 1515 1 chr3A.!!$F2 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 427 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2487 0.320421 AAAGGACGTCCGGACATGTG 60.32 55.0 32.8 19.29 42.08 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.302260 GGGCTTTGCTTATCTTCCTCC 58.698 52.381 0.00 0.00 0.00 4.30
21 22 2.092158 GGGCTTTGCTTATCTTCCTCCT 60.092 50.000 0.00 0.00 0.00 3.69
22 23 3.210227 GGCTTTGCTTATCTTCCTCCTC 58.790 50.000 0.00 0.00 0.00 3.71
23 24 3.118075 GGCTTTGCTTATCTTCCTCCTCT 60.118 47.826 0.00 0.00 0.00 3.69
24 25 4.101741 GGCTTTGCTTATCTTCCTCCTCTA 59.898 45.833 0.00 0.00 0.00 2.43
25 26 5.296748 GCTTTGCTTATCTTCCTCCTCTAG 58.703 45.833 0.00 0.00 0.00 2.43
40 41 4.172807 TCCTCTAGGAGATCTAGACCTCC 58.827 52.174 24.24 24.24 46.88 4.30
46 47 3.496331 GGAGATCTAGACCTCCTCTTGG 58.504 54.545 24.34 0.00 44.23 3.61
47 48 3.139397 GGAGATCTAGACCTCCTCTTGGA 59.861 52.174 24.34 0.00 44.23 3.53
60 61 3.796764 CTTGGAGATCAAGCCCTCC 57.203 57.895 0.00 0.00 45.24 4.30
61 62 1.211456 CTTGGAGATCAAGCCCTCCT 58.789 55.000 9.49 0.00 46.94 3.69
62 63 1.140652 CTTGGAGATCAAGCCCTCCTC 59.859 57.143 9.49 0.00 46.94 3.71
63 64 0.341258 TGGAGATCAAGCCCTCCTCT 59.659 55.000 9.49 0.00 46.94 3.69
64 65 1.274069 TGGAGATCAAGCCCTCCTCTT 60.274 52.381 9.49 0.00 46.94 2.85
65 66 1.140652 GGAGATCAAGCCCTCCTCTTG 59.859 57.143 0.00 0.00 44.23 3.02
66 67 1.140652 GAGATCAAGCCCTCCTCTTGG 59.859 57.143 0.00 0.00 40.82 3.61
67 68 1.207791 GATCAAGCCCTCCTCTTGGA 58.792 55.000 3.33 0.00 40.82 3.53
94 95 4.487714 TCCACTTGTGGATATCAAGACC 57.512 45.455 17.57 0.00 43.17 3.85
95 96 3.199946 TCCACTTGTGGATATCAAGACCC 59.800 47.826 17.57 0.00 43.17 4.46
96 97 3.545703 CACTTGTGGATATCAAGACCCC 58.454 50.000 4.83 0.00 43.17 4.95
97 98 3.054434 CACTTGTGGATATCAAGACCCCA 60.054 47.826 4.83 0.00 43.17 4.96
98 99 3.788142 ACTTGTGGATATCAAGACCCCAT 59.212 43.478 4.83 0.00 43.17 4.00
99 100 4.141390 ACTTGTGGATATCAAGACCCCATC 60.141 45.833 4.83 0.00 43.17 3.51
100 101 3.668821 TGTGGATATCAAGACCCCATCT 58.331 45.455 4.83 0.00 40.46 2.90
101 102 4.826616 TGTGGATATCAAGACCCCATCTA 58.173 43.478 4.83 0.00 36.27 1.98
102 103 4.840680 TGTGGATATCAAGACCCCATCTAG 59.159 45.833 4.83 0.00 36.27 2.43
103 104 4.223923 GTGGATATCAAGACCCCATCTAGG 59.776 50.000 4.83 0.00 36.27 3.02
123 124 2.921221 GGAAGGATCCCCATCATAGGA 58.079 52.381 8.55 0.00 40.10 2.94
124 125 3.468850 GGAAGGATCCCCATCATAGGAT 58.531 50.000 8.55 0.00 45.76 3.24
131 132 5.712084 ATCCCCATCATAGGATCATCAAG 57.288 43.478 0.00 0.00 38.57 3.02
132 133 4.766768 TCCCCATCATAGGATCATCAAGA 58.233 43.478 0.00 0.00 0.00 3.02
133 134 4.533707 TCCCCATCATAGGATCATCAAGAC 59.466 45.833 0.00 0.00 0.00 3.01
134 135 4.324099 CCCCATCATAGGATCATCAAGACC 60.324 50.000 0.00 0.00 0.00 3.85
135 136 4.535294 CCCATCATAGGATCATCAAGACCT 59.465 45.833 0.00 0.00 33.91 3.85
136 137 5.338219 CCCATCATAGGATCATCAAGACCTC 60.338 48.000 0.00 0.00 32.40 3.85
137 138 5.484644 CCATCATAGGATCATCAAGACCTCT 59.515 44.000 0.00 0.00 32.40 3.69
138 139 6.351202 CCATCATAGGATCATCAAGACCTCTC 60.351 46.154 0.00 0.00 32.40 3.20
139 140 5.963092 TCATAGGATCATCAAGACCTCTCT 58.037 41.667 0.00 0.00 32.40 3.10
140 141 6.380414 TCATAGGATCATCAAGACCTCTCTT 58.620 40.000 0.00 0.00 37.19 2.85
141 142 6.493115 TCATAGGATCATCAAGACCTCTCTTC 59.507 42.308 0.00 0.00 34.20 2.87
142 143 4.882559 AGGATCATCAAGACCTCTCTTCT 58.117 43.478 0.00 0.00 34.20 2.85
143 144 4.895297 AGGATCATCAAGACCTCTCTTCTC 59.105 45.833 0.00 0.00 34.20 2.87
144 145 4.648762 GGATCATCAAGACCTCTCTTCTCA 59.351 45.833 0.00 0.00 34.20 3.27
145 146 5.305128 GGATCATCAAGACCTCTCTTCTCAT 59.695 44.000 0.00 0.00 34.20 2.90
146 147 6.493115 GGATCATCAAGACCTCTCTTCTCATA 59.507 42.308 0.00 0.00 34.20 2.15
147 148 6.957920 TCATCAAGACCTCTCTTCTCATAG 57.042 41.667 0.00 0.00 34.20 2.23
148 149 5.832595 TCATCAAGACCTCTCTTCTCATAGG 59.167 44.000 0.00 0.00 34.20 2.57
149 150 5.458451 TCAAGACCTCTCTTCTCATAGGA 57.542 43.478 0.00 0.00 34.20 2.94
150 151 6.024563 TCAAGACCTCTCTTCTCATAGGAT 57.975 41.667 0.00 0.00 34.20 3.24
151 152 6.439487 TCAAGACCTCTCTTCTCATAGGATT 58.561 40.000 0.00 0.00 34.20 3.01
152 153 6.323482 TCAAGACCTCTCTTCTCATAGGATTG 59.677 42.308 0.00 0.00 34.20 2.67
153 154 5.147032 AGACCTCTCTTCTCATAGGATTGG 58.853 45.833 0.00 0.00 33.16 3.16
154 155 4.230455 ACCTCTCTTCTCATAGGATTGGG 58.770 47.826 0.00 0.00 33.16 4.12
155 156 4.078336 ACCTCTCTTCTCATAGGATTGGGA 60.078 45.833 0.00 0.00 33.16 4.37
156 157 5.092968 CCTCTCTTCTCATAGGATTGGGAT 58.907 45.833 0.00 0.00 0.00 3.85
157 158 5.046448 CCTCTCTTCTCATAGGATTGGGATG 60.046 48.000 0.00 0.00 0.00 3.51
158 159 5.720162 TCTCTTCTCATAGGATTGGGATGA 58.280 41.667 0.00 0.00 31.57 2.92
159 160 6.146047 TCTCTTCTCATAGGATTGGGATGAA 58.854 40.000 0.00 0.00 31.93 2.57
160 161 6.042552 TCTCTTCTCATAGGATTGGGATGAAC 59.957 42.308 0.00 0.00 31.93 3.18
161 162 5.907662 TCTTCTCATAGGATTGGGATGAACT 59.092 40.000 0.00 0.00 29.94 3.01
162 163 7.075797 TCTTCTCATAGGATTGGGATGAACTA 58.924 38.462 0.00 0.00 29.94 2.24
163 164 6.924913 TCTCATAGGATTGGGATGAACTAG 57.075 41.667 0.00 0.00 0.00 2.57
164 165 6.385443 TCTCATAGGATTGGGATGAACTAGT 58.615 40.000 0.00 0.00 0.00 2.57
165 166 7.535738 TCTCATAGGATTGGGATGAACTAGTA 58.464 38.462 0.00 0.00 0.00 1.82
166 167 7.451877 TCTCATAGGATTGGGATGAACTAGTAC 59.548 40.741 0.00 0.00 0.00 2.73
167 168 6.497259 TCATAGGATTGGGATGAACTAGTACC 59.503 42.308 0.00 0.00 0.00 3.34
168 169 4.631234 AGGATTGGGATGAACTAGTACCA 58.369 43.478 0.00 0.00 0.00 3.25
169 170 5.227593 AGGATTGGGATGAACTAGTACCAT 58.772 41.667 9.63 9.63 0.00 3.55
170 171 5.072329 AGGATTGGGATGAACTAGTACCATG 59.928 44.000 13.47 0.00 0.00 3.66
171 172 5.163195 GGATTGGGATGAACTAGTACCATGT 60.163 44.000 13.47 3.32 0.00 3.21
172 173 6.042781 GGATTGGGATGAACTAGTACCATGTA 59.957 42.308 13.47 0.70 0.00 2.29
173 174 7.256691 GGATTGGGATGAACTAGTACCATGTAT 60.257 40.741 13.47 2.21 0.00 2.29
174 175 6.665992 TGGGATGAACTAGTACCATGTATC 57.334 41.667 13.47 0.00 0.00 2.24
175 176 6.382087 TGGGATGAACTAGTACCATGTATCT 58.618 40.000 13.47 0.00 0.00 1.98
176 177 6.844388 TGGGATGAACTAGTACCATGTATCTT 59.156 38.462 13.47 0.00 0.00 2.40
177 178 7.347222 TGGGATGAACTAGTACCATGTATCTTT 59.653 37.037 13.47 0.00 0.00 2.52
178 179 7.873505 GGGATGAACTAGTACCATGTATCTTTC 59.126 40.741 13.47 0.00 0.00 2.62
179 180 7.873505 GGATGAACTAGTACCATGTATCTTTCC 59.126 40.741 13.47 5.39 0.00 3.13
180 181 7.973048 TGAACTAGTACCATGTATCTTTCCT 57.027 36.000 0.00 0.00 0.00 3.36
181 182 8.375493 TGAACTAGTACCATGTATCTTTCCTT 57.625 34.615 0.00 0.00 0.00 3.36
182 183 8.822805 TGAACTAGTACCATGTATCTTTCCTTT 58.177 33.333 0.00 0.00 0.00 3.11
183 184 9.099454 GAACTAGTACCATGTATCTTTCCTTTG 57.901 37.037 0.00 0.00 0.00 2.77
184 185 8.147244 ACTAGTACCATGTATCTTTCCTTTGT 57.853 34.615 0.00 0.00 0.00 2.83
185 186 8.603304 ACTAGTACCATGTATCTTTCCTTTGTT 58.397 33.333 0.00 0.00 0.00 2.83
188 189 9.975218 AGTACCATGTATCTTTCCTTTGTTATT 57.025 29.630 0.00 0.00 0.00 1.40
191 192 9.533831 ACCATGTATCTTTCCTTTGTTATTCTT 57.466 29.630 0.00 0.00 0.00 2.52
192 193 9.793252 CCATGTATCTTTCCTTTGTTATTCTTG 57.207 33.333 0.00 0.00 0.00 3.02
193 194 9.793252 CATGTATCTTTCCTTTGTTATTCTTGG 57.207 33.333 0.00 0.00 0.00 3.61
194 195 9.753674 ATGTATCTTTCCTTTGTTATTCTTGGA 57.246 29.630 0.00 0.00 0.00 3.53
195 196 9.753674 TGTATCTTTCCTTTGTTATTCTTGGAT 57.246 29.630 0.00 0.00 0.00 3.41
197 198 8.884124 ATCTTTCCTTTGTTATTCTTGGATCA 57.116 30.769 0.00 0.00 0.00 2.92
198 199 8.884124 TCTTTCCTTTGTTATTCTTGGATCAT 57.116 30.769 0.00 0.00 0.00 2.45
199 200 9.312904 TCTTTCCTTTGTTATTCTTGGATCATT 57.687 29.630 0.00 0.00 0.00 2.57
200 201 9.362539 CTTTCCTTTGTTATTCTTGGATCATTG 57.637 33.333 0.00 0.00 0.00 2.82
201 202 8.421249 TTCCTTTGTTATTCTTGGATCATTGT 57.579 30.769 0.00 0.00 0.00 2.71
202 203 7.829725 TCCTTTGTTATTCTTGGATCATTGTG 58.170 34.615 0.00 0.00 0.00 3.33
203 204 7.669304 TCCTTTGTTATTCTTGGATCATTGTGA 59.331 33.333 0.00 0.00 0.00 3.58
204 205 8.306038 CCTTTGTTATTCTTGGATCATTGTGAA 58.694 33.333 0.00 0.00 0.00 3.18
205 206 9.132521 CTTTGTTATTCTTGGATCATTGTGAAC 57.867 33.333 0.00 0.00 0.00 3.18
206 207 8.408043 TTGTTATTCTTGGATCATTGTGAACT 57.592 30.769 0.00 0.00 0.00 3.01
207 208 8.044060 TGTTATTCTTGGATCATTGTGAACTC 57.956 34.615 0.00 0.00 0.00 3.01
208 209 7.884877 TGTTATTCTTGGATCATTGTGAACTCT 59.115 33.333 0.00 0.00 0.00 3.24
209 210 8.734386 GTTATTCTTGGATCATTGTGAACTCTT 58.266 33.333 0.00 0.00 0.00 2.85
210 211 6.564709 TTCTTGGATCATTGTGAACTCTTG 57.435 37.500 0.00 0.00 0.00 3.02
211 212 5.624159 TCTTGGATCATTGTGAACTCTTGT 58.376 37.500 0.00 0.00 0.00 3.16
212 213 5.471116 TCTTGGATCATTGTGAACTCTTGTG 59.529 40.000 0.00 0.00 0.00 3.33
213 214 4.717877 TGGATCATTGTGAACTCTTGTGT 58.282 39.130 0.00 0.00 0.00 3.72
214 215 4.516321 TGGATCATTGTGAACTCTTGTGTG 59.484 41.667 0.00 0.00 0.00 3.82
215 216 4.516698 GGATCATTGTGAACTCTTGTGTGT 59.483 41.667 0.00 0.00 0.00 3.72
216 217 5.009010 GGATCATTGTGAACTCTTGTGTGTT 59.991 40.000 0.00 0.00 33.26 3.32
217 218 5.233957 TCATTGTGAACTCTTGTGTGTTG 57.766 39.130 0.00 0.00 31.09 3.33
218 219 4.699735 TCATTGTGAACTCTTGTGTGTTGT 59.300 37.500 0.00 0.00 31.09 3.32
219 220 5.182950 TCATTGTGAACTCTTGTGTGTTGTT 59.817 36.000 0.00 0.00 31.09 2.83
220 221 4.418013 TGTGAACTCTTGTGTGTTGTTG 57.582 40.909 0.00 0.00 31.09 3.33
221 222 3.190327 TGTGAACTCTTGTGTGTTGTTGG 59.810 43.478 0.00 0.00 31.09 3.77
222 223 3.438781 GTGAACTCTTGTGTGTTGTTGGA 59.561 43.478 0.00 0.00 31.09 3.53
223 224 4.096382 GTGAACTCTTGTGTGTTGTTGGAT 59.904 41.667 0.00 0.00 31.09 3.41
224 225 4.335315 TGAACTCTTGTGTGTTGTTGGATC 59.665 41.667 0.00 0.00 31.09 3.36
225 226 4.156455 ACTCTTGTGTGTTGTTGGATCT 57.844 40.909 0.00 0.00 0.00 2.75
226 227 5.290493 ACTCTTGTGTGTTGTTGGATCTA 57.710 39.130 0.00 0.00 0.00 1.98
227 228 5.300752 ACTCTTGTGTGTTGTTGGATCTAG 58.699 41.667 0.00 0.00 0.00 2.43
228 229 4.065088 TCTTGTGTGTTGTTGGATCTAGC 58.935 43.478 0.00 0.00 0.00 3.42
229 230 3.483808 TGTGTGTTGTTGGATCTAGCA 57.516 42.857 0.00 0.00 0.00 3.49
230 231 4.019792 TGTGTGTTGTTGGATCTAGCAT 57.980 40.909 0.00 0.00 0.00 3.79
231 232 5.159273 TGTGTGTTGTTGGATCTAGCATA 57.841 39.130 0.00 0.00 0.00 3.14
232 233 5.744171 TGTGTGTTGTTGGATCTAGCATAT 58.256 37.500 0.00 0.00 0.00 1.78
233 234 5.585844 TGTGTGTTGTTGGATCTAGCATATG 59.414 40.000 0.00 0.00 0.00 1.78
234 235 5.586243 GTGTGTTGTTGGATCTAGCATATGT 59.414 40.000 4.29 0.00 0.00 2.29
235 236 5.585844 TGTGTTGTTGGATCTAGCATATGTG 59.414 40.000 4.29 0.00 0.00 3.21
236 237 5.586243 GTGTTGTTGGATCTAGCATATGTGT 59.414 40.000 4.29 0.00 0.00 3.72
237 238 5.585844 TGTTGTTGGATCTAGCATATGTGTG 59.414 40.000 4.29 0.00 0.00 3.82
238 239 5.612725 TGTTGGATCTAGCATATGTGTGA 57.387 39.130 4.29 0.73 0.00 3.58
239 240 6.178607 TGTTGGATCTAGCATATGTGTGAT 57.821 37.500 4.29 5.52 0.00 3.06
240 241 6.594744 TGTTGGATCTAGCATATGTGTGATT 58.405 36.000 4.29 0.00 0.00 2.57
241 242 6.484308 TGTTGGATCTAGCATATGTGTGATTG 59.516 38.462 4.29 0.00 0.00 2.67
242 243 5.554070 TGGATCTAGCATATGTGTGATTGG 58.446 41.667 4.29 0.00 0.00 3.16
243 244 5.307716 TGGATCTAGCATATGTGTGATTGGA 59.692 40.000 4.29 0.00 0.00 3.53
244 245 6.013119 TGGATCTAGCATATGTGTGATTGGAT 60.013 38.462 4.29 0.00 0.00 3.41
245 246 6.538021 GGATCTAGCATATGTGTGATTGGATC 59.462 42.308 4.29 6.10 31.31 3.36
246 247 6.676990 TCTAGCATATGTGTGATTGGATCT 57.323 37.500 4.29 0.00 0.00 2.75
247 248 7.781324 TCTAGCATATGTGTGATTGGATCTA 57.219 36.000 4.29 0.00 0.00 1.98
248 249 7.834803 TCTAGCATATGTGTGATTGGATCTAG 58.165 38.462 4.29 2.52 0.00 2.43
249 250 6.430962 AGCATATGTGTGATTGGATCTAGT 57.569 37.500 4.29 0.00 0.00 2.57
250 251 6.462500 AGCATATGTGTGATTGGATCTAGTC 58.538 40.000 4.29 0.00 0.00 2.59
251 252 6.042437 AGCATATGTGTGATTGGATCTAGTCA 59.958 38.462 4.29 0.00 0.00 3.41
252 253 6.707608 GCATATGTGTGATTGGATCTAGTCAA 59.292 38.462 5.84 0.00 0.00 3.18
253 254 7.389884 GCATATGTGTGATTGGATCTAGTCAAT 59.610 37.037 5.84 0.44 36.43 2.57
254 255 9.281371 CATATGTGTGATTGGATCTAGTCAATT 57.719 33.333 5.84 0.00 34.18 2.32
255 256 9.857656 ATATGTGTGATTGGATCTAGTCAATTT 57.142 29.630 5.84 0.00 34.18 1.82
256 257 7.381766 TGTGTGATTGGATCTAGTCAATTTG 57.618 36.000 5.84 0.00 34.18 2.32
257 258 7.167535 TGTGTGATTGGATCTAGTCAATTTGA 58.832 34.615 5.84 0.00 34.18 2.69
258 259 7.335171 TGTGTGATTGGATCTAGTCAATTTGAG 59.665 37.037 5.84 0.00 34.18 3.02
259 260 7.335422 GTGTGATTGGATCTAGTCAATTTGAGT 59.665 37.037 5.84 11.33 34.18 3.41
260 261 7.335171 TGTGATTGGATCTAGTCAATTTGAGTG 59.665 37.037 15.52 7.04 34.18 3.51
261 262 7.335422 GTGATTGGATCTAGTCAATTTGAGTGT 59.665 37.037 15.52 3.36 34.18 3.55
262 263 7.884877 TGATTGGATCTAGTCAATTTGAGTGTT 59.115 33.333 15.52 2.00 34.18 3.32
263 264 8.641498 ATTGGATCTAGTCAATTTGAGTGTTT 57.359 30.769 15.52 1.68 31.49 2.83
264 265 7.672983 TGGATCTAGTCAATTTGAGTGTTTC 57.327 36.000 15.52 9.29 31.49 2.78
265 266 6.655003 TGGATCTAGTCAATTTGAGTGTTTCC 59.345 38.462 15.52 16.12 31.49 3.13
266 267 6.881602 GGATCTAGTCAATTTGAGTGTTTCCT 59.118 38.462 15.52 3.41 31.49 3.36
267 268 7.065204 GGATCTAGTCAATTTGAGTGTTTCCTC 59.935 40.741 15.52 5.27 31.49 3.71
268 269 7.067496 TCTAGTCAATTTGAGTGTTTCCTCT 57.933 36.000 15.52 2.14 31.49 3.69
269 270 7.155328 TCTAGTCAATTTGAGTGTTTCCTCTC 58.845 38.462 15.52 0.00 31.49 3.20
270 271 5.934781 AGTCAATTTGAGTGTTTCCTCTCT 58.065 37.500 5.94 0.00 33.37 3.10
271 272 5.994668 AGTCAATTTGAGTGTTTCCTCTCTC 59.005 40.000 5.94 0.00 33.37 3.20
272 273 5.994668 GTCAATTTGAGTGTTTCCTCTCTCT 59.005 40.000 0.00 0.00 33.37 3.10
273 274 6.484977 GTCAATTTGAGTGTTTCCTCTCTCTT 59.515 38.462 0.00 0.00 33.37 2.85
274 275 6.484643 TCAATTTGAGTGTTTCCTCTCTCTTG 59.515 38.462 0.00 0.00 33.37 3.02
275 276 5.359194 TTTGAGTGTTTCCTCTCTCTTGT 57.641 39.130 0.00 0.00 33.37 3.16
276 277 4.327982 TGAGTGTTTCCTCTCTCTTGTG 57.672 45.455 0.00 0.00 33.37 3.33
277 278 3.706594 TGAGTGTTTCCTCTCTCTTGTGT 59.293 43.478 0.00 0.00 33.37 3.72
278 279 4.162320 TGAGTGTTTCCTCTCTCTTGTGTT 59.838 41.667 0.00 0.00 33.37 3.32
279 280 4.698575 AGTGTTTCCTCTCTCTTGTGTTC 58.301 43.478 0.00 0.00 0.00 3.18
280 281 4.162320 AGTGTTTCCTCTCTCTTGTGTTCA 59.838 41.667 0.00 0.00 0.00 3.18
281 282 5.059833 GTGTTTCCTCTCTCTTGTGTTCAT 58.940 41.667 0.00 0.00 0.00 2.57
282 283 5.178438 GTGTTTCCTCTCTCTTGTGTTCATC 59.822 44.000 0.00 0.00 0.00 2.92
283 284 5.070981 TGTTTCCTCTCTCTTGTGTTCATCT 59.929 40.000 0.00 0.00 0.00 2.90
284 285 5.815233 TTCCTCTCTCTTGTGTTCATCTT 57.185 39.130 0.00 0.00 0.00 2.40
285 286 5.144692 TCCTCTCTCTTGTGTTCATCTTG 57.855 43.478 0.00 0.00 0.00 3.02
286 287 4.590647 TCCTCTCTCTTGTGTTCATCTTGT 59.409 41.667 0.00 0.00 0.00 3.16
287 288 5.070981 TCCTCTCTCTTGTGTTCATCTTGTT 59.929 40.000 0.00 0.00 0.00 2.83
288 289 5.762218 CCTCTCTCTTGTGTTCATCTTGTTT 59.238 40.000 0.00 0.00 0.00 2.83
289 290 6.261826 CCTCTCTCTTGTGTTCATCTTGTTTT 59.738 38.462 0.00 0.00 0.00 2.43
290 291 7.201767 CCTCTCTCTTGTGTTCATCTTGTTTTT 60.202 37.037 0.00 0.00 0.00 1.94
291 292 7.475015 TCTCTCTTGTGTTCATCTTGTTTTTG 58.525 34.615 0.00 0.00 0.00 2.44
292 293 6.563422 TCTCTTGTGTTCATCTTGTTTTTGG 58.437 36.000 0.00 0.00 0.00 3.28
293 294 5.659463 TCTTGTGTTCATCTTGTTTTTGGG 58.341 37.500 0.00 0.00 0.00 4.12
294 295 4.399004 TGTGTTCATCTTGTTTTTGGGG 57.601 40.909 0.00 0.00 0.00 4.96
295 296 4.026744 TGTGTTCATCTTGTTTTTGGGGA 58.973 39.130 0.00 0.00 0.00 4.81
296 297 4.653341 TGTGTTCATCTTGTTTTTGGGGAT 59.347 37.500 0.00 0.00 0.00 3.85
297 298 5.130145 TGTGTTCATCTTGTTTTTGGGGATT 59.870 36.000 0.00 0.00 0.00 3.01
298 299 5.696270 GTGTTCATCTTGTTTTTGGGGATTC 59.304 40.000 0.00 0.00 0.00 2.52
299 300 5.221621 TGTTCATCTTGTTTTTGGGGATTCC 60.222 40.000 0.00 0.00 0.00 3.01
312 313 1.680338 GGATTCCCCTCCAATTCGTG 58.320 55.000 0.00 0.00 35.24 4.35
313 314 1.211949 GGATTCCCCTCCAATTCGTGA 59.788 52.381 0.00 0.00 35.24 4.35
314 315 2.356741 GGATTCCCCTCCAATTCGTGAA 60.357 50.000 0.00 0.00 35.24 3.18
315 316 2.961531 TTCCCCTCCAATTCGTGAAA 57.038 45.000 0.00 0.00 0.00 2.69
316 317 2.489938 TCCCCTCCAATTCGTGAAAG 57.510 50.000 0.00 0.00 0.00 2.62
317 318 1.982226 TCCCCTCCAATTCGTGAAAGA 59.018 47.619 0.00 0.00 0.00 2.52
318 319 2.576191 TCCCCTCCAATTCGTGAAAGAT 59.424 45.455 0.00 0.00 0.00 2.40
319 320 2.945668 CCCCTCCAATTCGTGAAAGATC 59.054 50.000 0.00 0.00 0.00 2.75
320 321 2.945668 CCCTCCAATTCGTGAAAGATCC 59.054 50.000 0.00 0.00 0.00 3.36
321 322 2.945668 CCTCCAATTCGTGAAAGATCCC 59.054 50.000 0.00 0.00 0.00 3.85
322 323 2.945668 CTCCAATTCGTGAAAGATCCCC 59.054 50.000 0.00 0.00 0.00 4.81
323 324 2.307392 TCCAATTCGTGAAAGATCCCCA 59.693 45.455 0.00 0.00 0.00 4.96
324 325 2.423538 CCAATTCGTGAAAGATCCCCAC 59.576 50.000 0.00 0.00 0.00 4.61
325 326 3.347216 CAATTCGTGAAAGATCCCCACT 58.653 45.455 7.74 0.00 0.00 4.00
326 327 3.721087 ATTCGTGAAAGATCCCCACTT 57.279 42.857 7.74 0.00 0.00 3.16
327 328 4.837093 ATTCGTGAAAGATCCCCACTTA 57.163 40.909 7.74 0.00 0.00 2.24
328 329 3.887621 TCGTGAAAGATCCCCACTTAG 57.112 47.619 7.74 0.00 0.00 2.18
329 330 2.500098 TCGTGAAAGATCCCCACTTAGG 59.500 50.000 7.74 0.00 37.03 2.69
347 348 3.644861 GGTTCCACCCTACAACAGG 57.355 57.895 0.00 0.00 45.07 4.00
348 349 0.769247 GGTTCCACCCTACAACAGGT 59.231 55.000 0.00 0.00 43.80 4.00
349 350 1.144298 GGTTCCACCCTACAACAGGTT 59.856 52.381 0.00 0.00 43.80 3.50
350 351 2.423803 GGTTCCACCCTACAACAGGTTT 60.424 50.000 0.00 0.00 43.80 3.27
351 352 2.621526 GTTCCACCCTACAACAGGTTTG 59.378 50.000 0.00 0.00 43.80 2.93
352 353 2.128535 TCCACCCTACAACAGGTTTGA 58.871 47.619 0.00 0.00 43.80 2.69
353 354 2.714250 TCCACCCTACAACAGGTTTGAT 59.286 45.455 0.00 0.00 43.80 2.57
354 355 3.911260 TCCACCCTACAACAGGTTTGATA 59.089 43.478 0.00 0.00 43.80 2.15
355 356 4.538490 TCCACCCTACAACAGGTTTGATAT 59.462 41.667 0.00 0.00 43.80 1.63
356 357 4.881850 CCACCCTACAACAGGTTTGATATC 59.118 45.833 0.00 0.00 43.80 1.63
357 358 4.881850 CACCCTACAACAGGTTTGATATCC 59.118 45.833 0.00 0.00 43.80 2.59
358 359 4.788617 ACCCTACAACAGGTTTGATATCCT 59.211 41.667 0.00 0.00 43.80 3.24
417 418 9.912634 TTTCTACGTTTAATATTCGTATAGGGG 57.087 33.333 7.96 0.00 38.90 4.79
418 419 8.635765 TCTACGTTTAATATTCGTATAGGGGT 57.364 34.615 7.96 0.00 38.90 4.95
419 420 8.514594 TCTACGTTTAATATTCGTATAGGGGTG 58.485 37.037 7.96 0.00 38.90 4.61
420 421 7.054491 ACGTTTAATATTCGTATAGGGGTGT 57.946 36.000 0.00 0.00 36.05 4.16
421 422 6.925165 ACGTTTAATATTCGTATAGGGGTGTG 59.075 38.462 0.00 0.00 36.05 3.82
422 423 6.366877 CGTTTAATATTCGTATAGGGGTGTGG 59.633 42.308 0.00 0.00 0.00 4.17
423 424 7.444299 GTTTAATATTCGTATAGGGGTGTGGA 58.556 38.462 0.00 0.00 0.00 4.02
424 425 5.740290 AATATTCGTATAGGGGTGTGGAG 57.260 43.478 0.00 0.00 0.00 3.86
425 426 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
426 427 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.000 0.00 0.00 0.00 4.26
427 428 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
450 451 2.716217 AGGAGCTCCTGTGTATTTTGC 58.284 47.619 34.74 1.74 46.55 3.68
451 452 1.398390 GGAGCTCCTGTGTATTTTGCG 59.602 52.381 26.25 0.00 0.00 4.85
452 453 2.346803 GAGCTCCTGTGTATTTTGCGA 58.653 47.619 0.87 0.00 0.00 5.10
453 454 2.939103 GAGCTCCTGTGTATTTTGCGAT 59.061 45.455 0.87 0.00 0.00 4.58
454 455 2.939103 AGCTCCTGTGTATTTTGCGATC 59.061 45.455 0.00 0.00 0.00 3.69
455 456 2.939103 GCTCCTGTGTATTTTGCGATCT 59.061 45.455 0.00 0.00 0.00 2.75
456 457 4.119862 GCTCCTGTGTATTTTGCGATCTA 58.880 43.478 0.00 0.00 0.00 1.98
457 458 4.570772 GCTCCTGTGTATTTTGCGATCTAA 59.429 41.667 0.00 0.00 0.00 2.10
458 459 5.064707 GCTCCTGTGTATTTTGCGATCTAAA 59.935 40.000 0.00 0.00 0.00 1.85
459 460 6.417191 TCCTGTGTATTTTGCGATCTAAAC 57.583 37.500 0.00 0.00 0.00 2.01
460 461 5.062934 TCCTGTGTATTTTGCGATCTAAACG 59.937 40.000 0.00 0.00 0.00 3.60
479 480 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
480 481 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
481 482 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
482 483 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
483 484 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
489 490 6.907853 ATATTAGTTTACGGAGGGAGTACC 57.092 41.667 0.00 0.00 40.67 3.34
522 523 6.057627 ACATAGATAGGTCTAAACGACACG 57.942 41.667 0.00 0.00 44.68 4.49
524 525 4.879104 AGATAGGTCTAAACGACACGAG 57.121 45.455 0.00 0.00 44.68 4.18
530 531 2.404361 GTCTAAACGACACGAGCAACTC 59.596 50.000 0.00 0.00 42.37 3.01
546 547 4.745125 AGCAACTCGATGATAATAACCACG 59.255 41.667 0.00 0.00 0.00 4.94
547 548 4.743151 GCAACTCGATGATAATAACCACGA 59.257 41.667 0.00 0.00 0.00 4.35
548 549 5.405571 GCAACTCGATGATAATAACCACGAT 59.594 40.000 0.00 0.00 0.00 3.73
564 565 4.938832 ACCACGATAATCATTGTTTTCGGA 59.061 37.500 0.00 0.00 37.03 4.55
565 566 5.064707 ACCACGATAATCATTGTTTTCGGAG 59.935 40.000 0.00 8.08 37.03 4.63
611 612 3.895232 AGACCATACGCTTGACAATCT 57.105 42.857 0.00 0.00 0.00 2.40
612 613 4.207891 AGACCATACGCTTGACAATCTT 57.792 40.909 0.00 0.00 0.00 2.40
614 615 3.932710 GACCATACGCTTGACAATCTTGA 59.067 43.478 0.00 0.00 0.00 3.02
615 616 4.323417 ACCATACGCTTGACAATCTTGAA 58.677 39.130 0.00 0.00 0.00 2.69
616 617 4.759693 ACCATACGCTTGACAATCTTGAAA 59.240 37.500 0.00 0.00 0.00 2.69
620 621 5.288543 ACGCTTGACAATCTTGAAATCTC 57.711 39.130 0.00 0.00 0.00 2.75
621 622 4.756642 ACGCTTGACAATCTTGAAATCTCA 59.243 37.500 0.00 0.00 0.00 3.27
622 623 5.239306 ACGCTTGACAATCTTGAAATCTCAA 59.761 36.000 0.00 0.00 39.30 3.02
625 626 7.144000 GCTTGACAATCTTGAAATCTCAACTT 58.856 34.615 0.00 0.00 36.62 2.66
626 627 8.292448 GCTTGACAATCTTGAAATCTCAACTTA 58.708 33.333 0.00 0.00 36.62 2.24
628 629 9.559732 TTGACAATCTTGAAATCTCAACTTAGA 57.440 29.630 0.00 0.00 36.62 2.10
629 630 9.730705 TGACAATCTTGAAATCTCAACTTAGAT 57.269 29.630 0.00 0.00 36.62 1.98
755 1221 0.034186 CAGCCTAGCCCAACCAATCA 60.034 55.000 0.00 0.00 0.00 2.57
756 1222 0.704076 AGCCTAGCCCAACCAATCAA 59.296 50.000 0.00 0.00 0.00 2.57
757 1223 0.817654 GCCTAGCCCAACCAATCAAC 59.182 55.000 0.00 0.00 0.00 3.18
758 1224 1.474330 CCTAGCCCAACCAATCAACC 58.526 55.000 0.00 0.00 0.00 3.77
759 1225 1.272425 CCTAGCCCAACCAATCAACCA 60.272 52.381 0.00 0.00 0.00 3.67
760 1226 2.524306 CTAGCCCAACCAATCAACCAA 58.476 47.619 0.00 0.00 0.00 3.67
761 1227 1.047801 AGCCCAACCAATCAACCAAC 58.952 50.000 0.00 0.00 0.00 3.77
762 1228 0.755686 GCCCAACCAATCAACCAACA 59.244 50.000 0.00 0.00 0.00 3.33
763 1229 1.139853 GCCCAACCAATCAACCAACAA 59.860 47.619 0.00 0.00 0.00 2.83
764 1230 2.224499 GCCCAACCAATCAACCAACAAT 60.224 45.455 0.00 0.00 0.00 2.71
765 1231 3.007398 GCCCAACCAATCAACCAACAATA 59.993 43.478 0.00 0.00 0.00 1.90
766 1232 4.565022 CCCAACCAATCAACCAACAATAC 58.435 43.478 0.00 0.00 0.00 1.89
767 1233 4.233789 CCAACCAATCAACCAACAATACG 58.766 43.478 0.00 0.00 0.00 3.06
768 1234 4.233789 CAACCAATCAACCAACAATACGG 58.766 43.478 0.00 0.00 0.00 4.02
769 1235 3.492337 ACCAATCAACCAACAATACGGT 58.508 40.909 0.00 0.00 36.98 4.83
770 1236 3.892588 ACCAATCAACCAACAATACGGTT 59.107 39.130 0.00 0.00 46.52 4.44
771 1237 4.342665 ACCAATCAACCAACAATACGGTTT 59.657 37.500 0.00 0.00 42.99 3.27
772 1238 4.683781 CCAATCAACCAACAATACGGTTTG 59.316 41.667 0.00 0.00 42.99 2.93
773 1239 3.357166 TCAACCAACAATACGGTTTGC 57.643 42.857 0.00 0.00 42.99 3.68
774 1240 2.952978 TCAACCAACAATACGGTTTGCT 59.047 40.909 0.00 0.00 42.99 3.91
775 1241 3.003897 TCAACCAACAATACGGTTTGCTC 59.996 43.478 0.00 0.00 42.99 4.26
776 1242 1.883926 ACCAACAATACGGTTTGCTCC 59.116 47.619 0.08 0.00 28.43 4.70
784 1250 3.562635 GGTTTGCTCCGAAGTCCG 58.437 61.111 0.00 0.00 38.18 4.79
785 1251 1.005394 GGTTTGCTCCGAAGTCCGA 60.005 57.895 0.00 0.00 41.76 4.55
786 1252 0.601841 GGTTTGCTCCGAAGTCCGAA 60.602 55.000 0.00 0.00 41.76 4.30
787 1253 0.511653 GTTTGCTCCGAAGTCCGAAC 59.488 55.000 0.00 0.00 41.76 3.95
788 1254 0.105224 TTTGCTCCGAAGTCCGAACA 59.895 50.000 0.00 0.00 41.76 3.18
789 1255 0.105224 TTGCTCCGAAGTCCGAACAA 59.895 50.000 0.00 0.00 41.76 2.83
790 1256 0.320374 TGCTCCGAAGTCCGAACAAT 59.680 50.000 0.00 0.00 41.76 2.71
791 1257 1.546923 TGCTCCGAAGTCCGAACAATA 59.453 47.619 0.00 0.00 41.76 1.90
792 1258 2.028839 TGCTCCGAAGTCCGAACAATAA 60.029 45.455 0.00 0.00 41.76 1.40
793 1259 3.195661 GCTCCGAAGTCCGAACAATAAT 58.804 45.455 0.00 0.00 41.76 1.28
794 1260 3.245519 GCTCCGAAGTCCGAACAATAATC 59.754 47.826 0.00 0.00 41.76 1.75
795 1261 4.430007 CTCCGAAGTCCGAACAATAATCA 58.570 43.478 0.00 0.00 41.76 2.57
796 1262 4.178540 TCCGAAGTCCGAACAATAATCAC 58.821 43.478 0.00 0.00 41.76 3.06
797 1263 3.000078 CCGAAGTCCGAACAATAATCACG 60.000 47.826 0.00 0.00 41.76 4.35
798 1264 3.855379 CGAAGTCCGAACAATAATCACGA 59.145 43.478 0.00 0.00 41.76 4.35
799 1265 4.325204 CGAAGTCCGAACAATAATCACGAA 59.675 41.667 0.00 0.00 41.76 3.85
800 1266 5.164031 CGAAGTCCGAACAATAATCACGAAA 60.164 40.000 0.00 0.00 41.76 3.46
801 1267 5.526010 AGTCCGAACAATAATCACGAAAC 57.474 39.130 0.00 0.00 0.00 2.78
802 1268 4.390909 AGTCCGAACAATAATCACGAAACC 59.609 41.667 0.00 0.00 0.00 3.27
803 1269 4.390909 GTCCGAACAATAATCACGAAACCT 59.609 41.667 0.00 0.00 0.00 3.50
804 1270 4.998672 TCCGAACAATAATCACGAAACCTT 59.001 37.500 0.00 0.00 0.00 3.50
805 1271 5.470777 TCCGAACAATAATCACGAAACCTTT 59.529 36.000 0.00 0.00 0.00 3.11
806 1272 6.016943 TCCGAACAATAATCACGAAACCTTTT 60.017 34.615 0.00 0.00 0.00 2.27
807 1273 6.639279 CCGAACAATAATCACGAAACCTTTTT 59.361 34.615 0.00 0.00 0.00 1.94
1211 1693 1.271926 CCTAGCTAGAGGAGGAGGAGC 60.272 61.905 22.70 0.00 39.15 4.70
1212 1694 0.774908 TAGCTAGAGGAGGAGGAGCC 59.225 60.000 0.00 0.00 33.50 4.70
1516 2029 0.659427 ATTCATGAAGCGCACGGATG 59.341 50.000 14.54 6.27 0.00 3.51
1518 2031 2.108514 CATGAAGCGCACGGATGGT 61.109 57.895 11.47 0.00 0.00 3.55
1522 2035 1.696832 GAAGCGCACGGATGGTCTTC 61.697 60.000 11.47 0.00 0.00 2.87
1523 2036 2.125512 GCGCACGGATGGTCTTCT 60.126 61.111 0.30 0.00 0.00 2.85
1524 2037 1.741770 GCGCACGGATGGTCTTCTT 60.742 57.895 0.30 0.00 0.00 2.52
1525 2038 1.298859 GCGCACGGATGGTCTTCTTT 61.299 55.000 0.30 0.00 0.00 2.52
1526 2039 1.156736 CGCACGGATGGTCTTCTTTT 58.843 50.000 0.00 0.00 0.00 2.27
1527 2040 1.535462 CGCACGGATGGTCTTCTTTTT 59.465 47.619 0.00 0.00 0.00 1.94
1563 2076 1.419381 TCTTCCCCTTTGTTTTGCCC 58.581 50.000 0.00 0.00 0.00 5.36
1567 2080 1.127343 CCCCTTTGTTTTGCCCAAGA 58.873 50.000 0.00 0.00 0.00 3.02
1575 2088 1.888512 GTTTTGCCCAAGATCAGCAGA 59.111 47.619 0.00 0.00 37.89 4.26
1590 2103 3.070018 CAGCAGAAGGAGGTGTAAACTG 58.930 50.000 0.00 0.00 0.00 3.16
1592 2105 2.038557 GCAGAAGGAGGTGTAAACTGGA 59.961 50.000 0.00 0.00 0.00 3.86
1593 2106 3.307762 GCAGAAGGAGGTGTAAACTGGAT 60.308 47.826 0.00 0.00 0.00 3.41
1595 2108 3.519913 AGAAGGAGGTGTAAACTGGATCC 59.480 47.826 4.20 4.20 0.00 3.36
1596 2109 2.197465 AGGAGGTGTAAACTGGATCCC 58.803 52.381 9.90 0.00 0.00 3.85
1613 2152 1.070601 TCCCGATGGATGTGTATGCAG 59.929 52.381 0.00 0.00 38.08 4.41
1620 2159 0.379669 GATGTGTATGCAGTGCAGGC 59.620 55.000 24.20 17.87 43.65 4.85
1665 2206 3.194116 TGTTATTGTACTCCCGAGTCCAC 59.806 47.826 0.00 0.00 42.54 4.02
1689 2230 6.128634 ACGAATCTTTAAACGTGTTGATCTCC 60.129 38.462 1.29 0.00 37.58 3.71
1757 2302 9.687210 ATTTTAATTTCGTTCCTGTTAAAGTCC 57.313 29.630 0.00 0.00 0.00 3.85
1763 2308 5.430007 TCGTTCCTGTTAAAGTCCTTTTCA 58.570 37.500 0.00 0.00 34.23 2.69
1806 2351 7.038154 TGTGAGGAAAATGTTAGTTTCTTGG 57.962 36.000 2.43 0.00 35.68 3.61
1807 2352 6.831353 TGTGAGGAAAATGTTAGTTTCTTGGA 59.169 34.615 2.43 0.00 35.68 3.53
1856 2407 7.610305 AGTGAATAGTCCACCGTCAAATTATTT 59.390 33.333 0.00 0.00 35.23 1.40
1857 2408 7.696453 GTGAATAGTCCACCGTCAAATTATTTG 59.304 37.037 11.12 11.12 41.96 2.32
1859 2410 5.371115 AGTCCACCGTCAAATTATTTGTG 57.629 39.130 16.06 10.50 41.36 3.33
1860 2411 4.217550 AGTCCACCGTCAAATTATTTGTGG 59.782 41.667 21.04 21.04 41.36 4.17
1864 2415 4.459685 CACCGTCAAATTATTTGTGGGGTA 59.540 41.667 24.00 4.30 41.36 3.69
1877 2428 9.762381 TTATTTGTGGGGTATGATTTAACTTCT 57.238 29.630 0.00 0.00 0.00 2.85
1878 2429 7.461182 TTTGTGGGGTATGATTTAACTTCTG 57.539 36.000 0.00 0.00 0.00 3.02
1880 2431 7.260387 TGTGGGGTATGATTTAACTTCTGTA 57.740 36.000 0.00 0.00 0.00 2.74
1881 2432 7.691213 TGTGGGGTATGATTTAACTTCTGTAA 58.309 34.615 0.00 0.00 0.00 2.41
1895 2446 9.537852 TTAACTTCTGTAATTAGAGGTACTGGA 57.462 33.333 9.57 0.00 41.55 3.86
1896 2447 7.407393 ACTTCTGTAATTAGAGGTACTGGAC 57.593 40.000 9.57 0.00 41.55 4.02
1897 2448 7.183460 ACTTCTGTAATTAGAGGTACTGGACT 58.817 38.462 9.57 0.00 41.55 3.85
1898 2449 7.674772 ACTTCTGTAATTAGAGGTACTGGACTT 59.325 37.037 9.57 0.00 41.55 3.01
1899 2450 8.431910 TTCTGTAATTAGAGGTACTGGACTTT 57.568 34.615 9.57 0.00 41.55 2.66
1900 2451 7.837863 TCTGTAATTAGAGGTACTGGACTTTG 58.162 38.462 9.57 0.00 41.55 2.77
1901 2452 7.453752 TCTGTAATTAGAGGTACTGGACTTTGT 59.546 37.037 9.57 0.00 41.55 2.83
1902 2453 7.970102 TGTAATTAGAGGTACTGGACTTTGTT 58.030 34.615 0.00 0.00 41.55 2.83
1903 2454 7.876068 TGTAATTAGAGGTACTGGACTTTGTTG 59.124 37.037 0.00 0.00 41.55 3.33
1904 2455 3.127425 AGAGGTACTGGACTTTGTTGC 57.873 47.619 0.00 0.00 41.55 4.17
1906 2457 3.136626 AGAGGTACTGGACTTTGTTGCTT 59.863 43.478 0.00 0.00 41.55 3.91
1907 2458 3.883489 GAGGTACTGGACTTTGTTGCTTT 59.117 43.478 0.00 0.00 41.55 3.51
1908 2459 5.043737 AGGTACTGGACTTTGTTGCTTTA 57.956 39.130 0.00 0.00 37.18 1.85
1910 2461 4.820173 GGTACTGGACTTTGTTGCTTTACT 59.180 41.667 0.00 0.00 0.00 2.24
1911 2462 4.900635 ACTGGACTTTGTTGCTTTACTG 57.099 40.909 0.00 0.00 0.00 2.74
1912 2463 4.523083 ACTGGACTTTGTTGCTTTACTGA 58.477 39.130 0.00 0.00 0.00 3.41
1913 2464 4.335594 ACTGGACTTTGTTGCTTTACTGAC 59.664 41.667 0.00 0.00 0.00 3.51
1914 2465 3.311322 TGGACTTTGTTGCTTTACTGACG 59.689 43.478 0.00 0.00 0.00 4.35
1915 2466 3.289076 GACTTTGTTGCTTTACTGACGC 58.711 45.455 0.00 0.00 0.00 5.19
1917 2468 3.242739 ACTTTGTTGCTTTACTGACGCAG 60.243 43.478 5.47 5.47 37.52 5.18
1918 2469 0.586319 TGTTGCTTTACTGACGCAGC 59.414 50.000 6.74 0.00 34.37 5.25
1919 2470 0.586319 GTTGCTTTACTGACGCAGCA 59.414 50.000 6.74 0.00 40.53 4.41
1920 2471 0.586319 TTGCTTTACTGACGCAGCAC 59.414 50.000 6.74 0.00 41.95 4.40
1941 2492 4.418401 CGTTTGGGCCGGCACATG 62.418 66.667 35.88 21.92 0.00 3.21
1943 2494 2.988684 TTTGGGCCGGCACATGTC 60.989 61.111 35.88 11.50 0.00 3.06
2002 3916 8.914328 TTTAATTCTTCTTTCCGTTTTCGTTT 57.086 26.923 0.00 0.00 42.35 3.60
2003 3917 8.914328 TTAATTCTTCTTTCCGTTTTCGTTTT 57.086 26.923 0.00 0.00 42.35 2.43
2005 3961 6.858104 TTCTTCTTTCCGTTTTCGTTTTTC 57.142 33.333 0.00 0.00 42.35 2.29
2007 3963 7.306205 TCTTCTTTCCGTTTTCGTTTTTCTA 57.694 32.000 0.00 0.00 42.35 2.10
2010 3966 7.018635 TCTTTCCGTTTTCGTTTTTCTACAT 57.981 32.000 0.00 0.00 42.35 2.29
2011 3967 8.140677 TCTTTCCGTTTTCGTTTTTCTACATA 57.859 30.769 0.00 0.00 42.35 2.29
2014 3970 9.733219 TTTCCGTTTTCGTTTTTCTACATAAAT 57.267 25.926 0.00 0.00 42.35 1.40
2043 3999 9.774742 TTTGGAAATAAAAACGGTTTGAAAATG 57.225 25.926 6.92 0.00 0.00 2.32
2044 4000 8.718102 TGGAAATAAAAACGGTTTGAAAATGA 57.282 26.923 6.92 0.00 0.00 2.57
2045 4001 9.162764 TGGAAATAAAAACGGTTTGAAAATGAA 57.837 25.926 6.92 0.00 0.00 2.57
2046 4002 9.989869 GGAAATAAAAACGGTTTGAAAATGAAA 57.010 25.926 6.92 0.00 0.00 2.69
2052 4008 9.899226 AAAAACGGTTTGAAAATGAAAAATGAA 57.101 22.222 6.92 0.00 0.00 2.57
2053 4009 9.899226 AAAACGGTTTGAAAATGAAAAATGAAA 57.101 22.222 6.92 0.00 0.00 2.69
2055 4011 9.500864 AACGGTTTGAAAATGAAAAATGAAATG 57.499 25.926 0.00 0.00 0.00 2.32
2056 4012 8.672815 ACGGTTTGAAAATGAAAAATGAAATGT 58.327 25.926 0.00 0.00 0.00 2.71
2057 4013 9.500864 CGGTTTGAAAATGAAAAATGAAATGTT 57.499 25.926 0.00 0.00 0.00 2.71
2194 4166 9.727627 TGTTAATGAAATTGAACAAAATTTGGC 57.272 25.926 10.71 2.59 39.31 4.52
2195 4167 9.179552 GTTAATGAAATTGAACAAAATTTGGCC 57.820 29.630 10.71 0.00 39.31 5.36
2196 4168 6.956202 ATGAAATTGAACAAAATTTGGCCA 57.044 29.167 0.00 0.00 39.31 5.36
2197 4169 6.764308 TGAAATTGAACAAAATTTGGCCAA 57.236 29.167 16.05 16.05 39.31 4.52
2198 4170 7.344095 TGAAATTGAACAAAATTTGGCCAAT 57.656 28.000 21.26 16.36 39.31 3.16
2199 4171 7.779073 TGAAATTGAACAAAATTTGGCCAATT 58.221 26.923 21.26 22.47 42.70 2.32
2200 4172 8.906867 TGAAATTGAACAAAATTTGGCCAATTA 58.093 25.926 25.43 5.48 41.43 1.40
2201 4173 9.741647 GAAATTGAACAAAATTTGGCCAATTAA 57.258 25.926 25.43 4.58 41.43 1.40
2325 4298 7.225538 TGACCATGCATTTTAAAAATGTTCGTT 59.774 29.630 4.44 0.00 0.00 3.85
2344 8137 6.262193 TCGTTAAATCAGAAAAATGTCCCC 57.738 37.500 0.00 0.00 0.00 4.81
2348 8141 5.473066 AAATCAGAAAAATGTCCCCACTG 57.527 39.130 0.00 0.00 0.00 3.66
2365 8158 2.032550 CACTGACATTGCGGATTGGATC 59.967 50.000 3.85 0.00 0.00 3.36
2375 8168 2.417924 GCGGATTGGATCGAGCATAGAT 60.418 50.000 1.84 0.00 34.94 1.98
2388 8181 5.931724 TCGAGCATAGATTTTGTTGTCTTGA 59.068 36.000 0.00 0.00 0.00 3.02
2452 8249 7.096551 AGTCTCAAGCAGATAAGAAGAGAAAC 58.903 38.462 0.00 0.00 33.05 2.78
2456 8253 5.652994 AGCAGATAAGAAGAGAAACGAGT 57.347 39.130 0.00 0.00 0.00 4.18
2457 8254 6.761099 AGCAGATAAGAAGAGAAACGAGTA 57.239 37.500 0.00 0.00 0.00 2.59
2464 8261 8.745464 ATAAGAAGAGAAACGAGTACAACTTC 57.255 34.615 0.00 0.00 34.62 3.01
2465 8262 6.145338 AGAAGAGAAACGAGTACAACTTCA 57.855 37.500 0.00 0.00 36.15 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.092158 AGGAGGAAGATAAGCAAAGCCC 60.092 50.000 0.00 0.00 0.00 5.19
26 27 4.447138 TCCAAGAGGAGGTCTAGATCTC 57.553 50.000 22.77 22.77 39.61 2.75
46 47 1.140652 CCAAGAGGAGGGCTTGATCTC 59.859 57.143 0.00 0.00 44.16 2.75
47 48 1.211456 CCAAGAGGAGGGCTTGATCT 58.789 55.000 0.00 0.00 44.16 2.75
48 49 1.207791 TCCAAGAGGAGGGCTTGATC 58.792 55.000 0.00 0.00 44.16 2.92
49 50 3.424640 TCCAAGAGGAGGGCTTGAT 57.575 52.632 0.00 0.00 44.16 2.57
50 51 4.998839 TCCAAGAGGAGGGCTTGA 57.001 55.556 0.00 0.00 44.16 3.02
75 76 3.054434 TGGGGTCTTGATATCCACAAGTG 60.054 47.826 0.00 0.00 43.30 3.16
76 77 3.189606 TGGGGTCTTGATATCCACAAGT 58.810 45.455 0.00 0.00 43.30 3.16
77 78 3.931907 TGGGGTCTTGATATCCACAAG 57.068 47.619 0.00 0.00 43.92 3.16
78 79 4.047166 AGATGGGGTCTTGATATCCACAA 58.953 43.478 0.00 0.00 38.19 3.33
79 80 3.668821 AGATGGGGTCTTGATATCCACA 58.331 45.455 0.00 0.00 39.07 4.17
80 81 4.223923 CCTAGATGGGGTCTTGATATCCAC 59.776 50.000 0.00 0.00 38.42 4.02
81 82 4.429505 CCTAGATGGGGTCTTGATATCCA 58.570 47.826 0.00 0.00 38.42 3.41
103 104 2.921221 TCCTATGATGGGGATCCTTCC 58.079 52.381 12.58 5.85 41.77 3.46
109 110 5.191323 GTCTTGATGATCCTATGATGGGGAT 59.809 44.000 0.00 0.00 44.11 3.85
110 111 4.533707 GTCTTGATGATCCTATGATGGGGA 59.466 45.833 0.00 0.00 35.96 4.81
111 112 4.324099 GGTCTTGATGATCCTATGATGGGG 60.324 50.000 0.00 0.00 0.00 4.96
112 113 4.535294 AGGTCTTGATGATCCTATGATGGG 59.465 45.833 0.00 0.00 0.00 4.00
113 114 5.484644 AGAGGTCTTGATGATCCTATGATGG 59.515 44.000 0.00 0.00 0.00 3.51
114 115 6.438108 AGAGAGGTCTTGATGATCCTATGATG 59.562 42.308 0.00 0.00 0.00 3.07
115 116 6.564099 AGAGAGGTCTTGATGATCCTATGAT 58.436 40.000 0.00 0.00 0.00 2.45
116 117 5.963092 AGAGAGGTCTTGATGATCCTATGA 58.037 41.667 0.00 0.00 0.00 2.15
117 118 6.494491 AGAAGAGAGGTCTTGATGATCCTATG 59.506 42.308 0.00 0.00 43.50 2.23
118 119 6.623329 AGAAGAGAGGTCTTGATGATCCTAT 58.377 40.000 0.00 0.00 43.50 2.57
119 120 6.024563 AGAAGAGAGGTCTTGATGATCCTA 57.975 41.667 0.00 0.00 43.50 2.94
120 121 4.882559 AGAAGAGAGGTCTTGATGATCCT 58.117 43.478 0.00 0.00 43.50 3.24
121 122 4.648762 TGAGAAGAGAGGTCTTGATGATCC 59.351 45.833 0.00 0.00 43.50 3.36
122 123 5.850557 TGAGAAGAGAGGTCTTGATGATC 57.149 43.478 0.00 0.00 43.50 2.92
123 124 6.494491 CCTATGAGAAGAGAGGTCTTGATGAT 59.506 42.308 0.00 0.00 43.50 2.45
124 125 5.832595 CCTATGAGAAGAGAGGTCTTGATGA 59.167 44.000 0.00 0.00 43.50 2.92
125 126 5.832595 TCCTATGAGAAGAGAGGTCTTGATG 59.167 44.000 0.00 0.00 43.50 3.07
126 127 6.024563 TCCTATGAGAAGAGAGGTCTTGAT 57.975 41.667 0.00 0.00 43.50 2.57
127 128 5.458451 TCCTATGAGAAGAGAGGTCTTGA 57.542 43.478 0.00 0.00 43.50 3.02
128 129 6.462768 CCAATCCTATGAGAAGAGAGGTCTTG 60.463 46.154 0.00 0.00 43.50 3.02
129 130 5.602145 CCAATCCTATGAGAAGAGAGGTCTT 59.398 44.000 0.00 0.00 46.32 3.01
130 131 5.147032 CCAATCCTATGAGAAGAGAGGTCT 58.853 45.833 0.00 0.00 32.81 3.85
131 132 4.283212 CCCAATCCTATGAGAAGAGAGGTC 59.717 50.000 0.00 0.00 0.00 3.85
132 133 4.078336 TCCCAATCCTATGAGAAGAGAGGT 60.078 45.833 0.00 0.00 0.00 3.85
133 134 4.487804 TCCCAATCCTATGAGAAGAGAGG 58.512 47.826 0.00 0.00 0.00 3.69
134 135 5.779260 TCATCCCAATCCTATGAGAAGAGAG 59.221 44.000 0.00 0.00 0.00 3.20
135 136 5.720162 TCATCCCAATCCTATGAGAAGAGA 58.280 41.667 0.00 0.00 0.00 3.10
136 137 6.043012 AGTTCATCCCAATCCTATGAGAAGAG 59.957 42.308 0.00 0.00 31.64 2.85
137 138 5.907662 AGTTCATCCCAATCCTATGAGAAGA 59.092 40.000 0.00 0.00 31.64 2.87
138 139 6.185114 AGTTCATCCCAATCCTATGAGAAG 57.815 41.667 0.00 0.00 31.64 2.85
139 140 6.846505 ACTAGTTCATCCCAATCCTATGAGAA 59.153 38.462 0.00 0.00 31.64 2.87
140 141 6.385443 ACTAGTTCATCCCAATCCTATGAGA 58.615 40.000 0.00 0.00 31.64 3.27
141 142 6.678568 ACTAGTTCATCCCAATCCTATGAG 57.321 41.667 0.00 0.00 31.64 2.90
142 143 6.497259 GGTACTAGTTCATCCCAATCCTATGA 59.503 42.308 0.00 0.00 0.00 2.15
143 144 6.270000 TGGTACTAGTTCATCCCAATCCTATG 59.730 42.308 0.00 0.00 0.00 2.23
144 145 6.390504 TGGTACTAGTTCATCCCAATCCTAT 58.609 40.000 0.00 0.00 0.00 2.57
145 146 5.784023 TGGTACTAGTTCATCCCAATCCTA 58.216 41.667 0.00 0.00 0.00 2.94
146 147 4.631234 TGGTACTAGTTCATCCCAATCCT 58.369 43.478 0.00 0.00 0.00 3.24
147 148 5.163195 ACATGGTACTAGTTCATCCCAATCC 60.163 44.000 0.00 0.00 0.00 3.01
148 149 5.930135 ACATGGTACTAGTTCATCCCAATC 58.070 41.667 0.00 0.00 0.00 2.67
149 150 5.975988 ACATGGTACTAGTTCATCCCAAT 57.024 39.130 0.00 0.00 0.00 3.16
150 151 6.844388 AGATACATGGTACTAGTTCATCCCAA 59.156 38.462 0.00 0.00 0.00 4.12
151 152 6.382087 AGATACATGGTACTAGTTCATCCCA 58.618 40.000 0.00 0.54 0.00 4.37
152 153 6.919775 AGATACATGGTACTAGTTCATCCC 57.080 41.667 0.00 0.00 0.00 3.85
153 154 7.873505 GGAAAGATACATGGTACTAGTTCATCC 59.126 40.741 0.00 0.00 0.00 3.51
154 155 8.643324 AGGAAAGATACATGGTACTAGTTCATC 58.357 37.037 0.00 0.00 0.00 2.92
155 156 8.554490 AGGAAAGATACATGGTACTAGTTCAT 57.446 34.615 0.00 3.05 0.00 2.57
156 157 7.973048 AGGAAAGATACATGGTACTAGTTCA 57.027 36.000 0.00 0.38 0.00 3.18
157 158 9.099454 CAAAGGAAAGATACATGGTACTAGTTC 57.901 37.037 0.00 0.00 0.00 3.01
158 159 8.603304 ACAAAGGAAAGATACATGGTACTAGTT 58.397 33.333 0.00 0.00 0.00 2.24
159 160 8.147244 ACAAAGGAAAGATACATGGTACTAGT 57.853 34.615 0.00 0.00 0.00 2.57
162 163 9.975218 AATAACAAAGGAAAGATACATGGTACT 57.025 29.630 0.00 0.00 0.00 2.73
165 166 9.533831 AAGAATAACAAAGGAAAGATACATGGT 57.466 29.630 0.00 0.00 0.00 3.55
166 167 9.793252 CAAGAATAACAAAGGAAAGATACATGG 57.207 33.333 0.00 0.00 0.00 3.66
167 168 9.793252 CCAAGAATAACAAAGGAAAGATACATG 57.207 33.333 0.00 0.00 0.00 3.21
168 169 9.753674 TCCAAGAATAACAAAGGAAAGATACAT 57.246 29.630 0.00 0.00 0.00 2.29
169 170 9.753674 ATCCAAGAATAACAAAGGAAAGATACA 57.246 29.630 0.00 0.00 0.00 2.29
171 172 9.973661 TGATCCAAGAATAACAAAGGAAAGATA 57.026 29.630 0.00 0.00 0.00 1.98
172 173 8.884124 TGATCCAAGAATAACAAAGGAAAGAT 57.116 30.769 0.00 0.00 0.00 2.40
173 174 8.884124 ATGATCCAAGAATAACAAAGGAAAGA 57.116 30.769 0.00 0.00 0.00 2.52
174 175 9.362539 CAATGATCCAAGAATAACAAAGGAAAG 57.637 33.333 0.00 0.00 0.00 2.62
175 176 8.869109 ACAATGATCCAAGAATAACAAAGGAAA 58.131 29.630 0.00 0.00 0.00 3.13
176 177 8.306038 CACAATGATCCAAGAATAACAAAGGAA 58.694 33.333 0.00 0.00 0.00 3.36
177 178 7.669304 TCACAATGATCCAAGAATAACAAAGGA 59.331 33.333 0.00 0.00 0.00 3.36
178 179 7.829725 TCACAATGATCCAAGAATAACAAAGG 58.170 34.615 0.00 0.00 0.00 3.11
179 180 9.132521 GTTCACAATGATCCAAGAATAACAAAG 57.867 33.333 0.00 0.00 0.00 2.77
180 181 8.859090 AGTTCACAATGATCCAAGAATAACAAA 58.141 29.630 0.00 0.00 0.00 2.83
181 182 8.408043 AGTTCACAATGATCCAAGAATAACAA 57.592 30.769 0.00 0.00 0.00 2.83
182 183 7.884877 AGAGTTCACAATGATCCAAGAATAACA 59.115 33.333 0.00 0.00 0.00 2.41
183 184 8.273780 AGAGTTCACAATGATCCAAGAATAAC 57.726 34.615 0.00 0.00 0.00 1.89
184 185 8.733458 CAAGAGTTCACAATGATCCAAGAATAA 58.267 33.333 0.00 0.00 0.00 1.40
185 186 7.884877 ACAAGAGTTCACAATGATCCAAGAATA 59.115 33.333 0.00 0.00 0.00 1.75
186 187 6.718454 ACAAGAGTTCACAATGATCCAAGAAT 59.282 34.615 0.00 0.00 0.00 2.40
187 188 6.016860 CACAAGAGTTCACAATGATCCAAGAA 60.017 38.462 0.00 0.00 0.00 2.52
188 189 5.471116 CACAAGAGTTCACAATGATCCAAGA 59.529 40.000 0.00 0.00 0.00 3.02
189 190 5.240183 ACACAAGAGTTCACAATGATCCAAG 59.760 40.000 0.00 0.00 0.00 3.61
190 191 5.008911 CACACAAGAGTTCACAATGATCCAA 59.991 40.000 0.00 0.00 0.00 3.53
191 192 4.516321 CACACAAGAGTTCACAATGATCCA 59.484 41.667 0.00 0.00 0.00 3.41
192 193 4.516698 ACACACAAGAGTTCACAATGATCC 59.483 41.667 0.00 0.00 0.00 3.36
193 194 5.679734 ACACACAAGAGTTCACAATGATC 57.320 39.130 0.00 0.00 0.00 2.92
194 195 5.357878 ACAACACACAAGAGTTCACAATGAT 59.642 36.000 0.00 0.00 0.00 2.45
195 196 4.699735 ACAACACACAAGAGTTCACAATGA 59.300 37.500 0.00 0.00 0.00 2.57
196 197 4.985413 ACAACACACAAGAGTTCACAATG 58.015 39.130 0.00 0.00 0.00 2.82
197 198 5.401550 CAACAACACACAAGAGTTCACAAT 58.598 37.500 0.00 0.00 0.00 2.71
198 199 4.320861 CCAACAACACACAAGAGTTCACAA 60.321 41.667 0.00 0.00 0.00 3.33
199 200 3.190327 CCAACAACACACAAGAGTTCACA 59.810 43.478 0.00 0.00 0.00 3.58
200 201 3.438781 TCCAACAACACACAAGAGTTCAC 59.561 43.478 0.00 0.00 0.00 3.18
201 202 3.680490 TCCAACAACACACAAGAGTTCA 58.320 40.909 0.00 0.00 0.00 3.18
202 203 4.576463 AGATCCAACAACACACAAGAGTTC 59.424 41.667 0.00 0.00 0.00 3.01
203 204 4.526970 AGATCCAACAACACACAAGAGTT 58.473 39.130 0.00 0.00 0.00 3.01
204 205 4.156455 AGATCCAACAACACACAAGAGT 57.844 40.909 0.00 0.00 0.00 3.24
205 206 4.153117 GCTAGATCCAACAACACACAAGAG 59.847 45.833 0.00 0.00 0.00 2.85
206 207 4.065088 GCTAGATCCAACAACACACAAGA 58.935 43.478 0.00 0.00 0.00 3.02
207 208 3.814842 TGCTAGATCCAACAACACACAAG 59.185 43.478 0.00 0.00 0.00 3.16
208 209 3.814625 TGCTAGATCCAACAACACACAA 58.185 40.909 0.00 0.00 0.00 3.33
209 210 3.483808 TGCTAGATCCAACAACACACA 57.516 42.857 0.00 0.00 0.00 3.72
210 211 5.586243 ACATATGCTAGATCCAACAACACAC 59.414 40.000 1.58 0.00 0.00 3.82
211 212 5.585844 CACATATGCTAGATCCAACAACACA 59.414 40.000 1.58 0.00 0.00 3.72
212 213 5.586243 ACACATATGCTAGATCCAACAACAC 59.414 40.000 1.58 0.00 0.00 3.32
213 214 5.585844 CACACATATGCTAGATCCAACAACA 59.414 40.000 1.58 0.00 0.00 3.33
214 215 5.817296 TCACACATATGCTAGATCCAACAAC 59.183 40.000 1.58 0.00 0.00 3.32
215 216 5.988287 TCACACATATGCTAGATCCAACAA 58.012 37.500 1.58 0.00 0.00 2.83
216 217 5.612725 TCACACATATGCTAGATCCAACA 57.387 39.130 1.58 0.00 0.00 3.33
217 218 6.072838 CCAATCACACATATGCTAGATCCAAC 60.073 42.308 1.58 0.00 0.00 3.77
218 219 5.999600 CCAATCACACATATGCTAGATCCAA 59.000 40.000 1.58 0.00 0.00 3.53
219 220 5.307716 TCCAATCACACATATGCTAGATCCA 59.692 40.000 1.58 0.00 0.00 3.41
220 221 5.798132 TCCAATCACACATATGCTAGATCC 58.202 41.667 1.58 0.00 0.00 3.36
221 222 7.329499 AGATCCAATCACACATATGCTAGATC 58.671 38.462 1.58 4.24 0.00 2.75
222 223 7.255199 AGATCCAATCACACATATGCTAGAT 57.745 36.000 1.58 0.68 0.00 1.98
223 224 6.676990 AGATCCAATCACACATATGCTAGA 57.323 37.500 1.58 0.00 0.00 2.43
224 225 7.609960 ACTAGATCCAATCACACATATGCTAG 58.390 38.462 1.58 3.72 0.00 3.42
225 226 7.233348 TGACTAGATCCAATCACACATATGCTA 59.767 37.037 1.58 0.00 0.00 3.49
226 227 6.042437 TGACTAGATCCAATCACACATATGCT 59.958 38.462 1.58 0.00 0.00 3.79
227 228 6.226052 TGACTAGATCCAATCACACATATGC 58.774 40.000 1.58 0.00 0.00 3.14
228 229 8.843885 ATTGACTAGATCCAATCACACATATG 57.156 34.615 0.00 0.00 0.00 1.78
229 230 9.857656 AAATTGACTAGATCCAATCACACATAT 57.142 29.630 0.00 0.00 32.36 1.78
230 231 9.112725 CAAATTGACTAGATCCAATCACACATA 57.887 33.333 0.00 0.00 32.36 2.29
231 232 7.830697 TCAAATTGACTAGATCCAATCACACAT 59.169 33.333 0.00 0.00 32.36 3.21
232 233 7.167535 TCAAATTGACTAGATCCAATCACACA 58.832 34.615 0.00 0.00 32.36 3.72
233 234 7.335422 ACTCAAATTGACTAGATCCAATCACAC 59.665 37.037 0.00 0.00 32.36 3.82
234 235 7.335171 CACTCAAATTGACTAGATCCAATCACA 59.665 37.037 0.00 0.00 32.36 3.58
235 236 7.335422 ACACTCAAATTGACTAGATCCAATCAC 59.665 37.037 0.00 0.00 32.36 3.06
236 237 7.397221 ACACTCAAATTGACTAGATCCAATCA 58.603 34.615 0.00 0.00 32.36 2.57
237 238 7.856145 ACACTCAAATTGACTAGATCCAATC 57.144 36.000 0.00 0.00 32.36 2.67
238 239 8.641498 AAACACTCAAATTGACTAGATCCAAT 57.359 30.769 0.00 0.43 34.75 3.16
239 240 7.174946 GGAAACACTCAAATTGACTAGATCCAA 59.825 37.037 0.00 0.00 0.00 3.53
240 241 6.655003 GGAAACACTCAAATTGACTAGATCCA 59.345 38.462 0.00 0.00 0.00 3.41
241 242 6.881602 AGGAAACACTCAAATTGACTAGATCC 59.118 38.462 0.00 0.00 0.00 3.36
242 243 7.821846 AGAGGAAACACTCAAATTGACTAGATC 59.178 37.037 0.00 0.00 39.97 2.75
243 244 7.684529 AGAGGAAACACTCAAATTGACTAGAT 58.315 34.615 0.00 0.00 39.97 1.98
244 245 7.067496 AGAGGAAACACTCAAATTGACTAGA 57.933 36.000 0.00 0.00 39.97 2.43
245 246 7.357951 GAGAGGAAACACTCAAATTGACTAG 57.642 40.000 0.00 0.00 46.03 2.57
256 257 4.329462 ACACAAGAGAGAGGAAACACTC 57.671 45.455 0.00 0.00 46.99 3.51
257 258 4.162320 TGAACACAAGAGAGAGGAAACACT 59.838 41.667 0.00 0.00 0.00 3.55
258 259 4.442706 TGAACACAAGAGAGAGGAAACAC 58.557 43.478 0.00 0.00 0.00 3.32
259 260 4.753516 TGAACACAAGAGAGAGGAAACA 57.246 40.909 0.00 0.00 0.00 2.83
260 261 5.546526 AGATGAACACAAGAGAGAGGAAAC 58.453 41.667 0.00 0.00 0.00 2.78
261 262 5.815233 AGATGAACACAAGAGAGAGGAAA 57.185 39.130 0.00 0.00 0.00 3.13
262 263 5.070981 ACAAGATGAACACAAGAGAGAGGAA 59.929 40.000 0.00 0.00 0.00 3.36
263 264 4.590647 ACAAGATGAACACAAGAGAGAGGA 59.409 41.667 0.00 0.00 0.00 3.71
264 265 4.892433 ACAAGATGAACACAAGAGAGAGG 58.108 43.478 0.00 0.00 0.00 3.69
265 266 6.857777 AAACAAGATGAACACAAGAGAGAG 57.142 37.500 0.00 0.00 0.00 3.20
266 267 7.415541 CCAAAAACAAGATGAACACAAGAGAGA 60.416 37.037 0.00 0.00 0.00 3.10
267 268 6.694411 CCAAAAACAAGATGAACACAAGAGAG 59.306 38.462 0.00 0.00 0.00 3.20
268 269 6.405731 CCCAAAAACAAGATGAACACAAGAGA 60.406 38.462 0.00 0.00 0.00 3.10
269 270 5.750067 CCCAAAAACAAGATGAACACAAGAG 59.250 40.000 0.00 0.00 0.00 2.85
270 271 5.395103 CCCCAAAAACAAGATGAACACAAGA 60.395 40.000 0.00 0.00 0.00 3.02
271 272 4.810491 CCCCAAAAACAAGATGAACACAAG 59.190 41.667 0.00 0.00 0.00 3.16
272 273 4.467795 TCCCCAAAAACAAGATGAACACAA 59.532 37.500 0.00 0.00 0.00 3.33
273 274 4.026744 TCCCCAAAAACAAGATGAACACA 58.973 39.130 0.00 0.00 0.00 3.72
274 275 4.664150 TCCCCAAAAACAAGATGAACAC 57.336 40.909 0.00 0.00 0.00 3.32
275 276 5.221621 GGAATCCCCAAAAACAAGATGAACA 60.222 40.000 0.00 0.00 34.14 3.18
276 277 5.237815 GGAATCCCCAAAAACAAGATGAAC 58.762 41.667 0.00 0.00 34.14 3.18
277 278 5.482163 GGAATCCCCAAAAACAAGATGAA 57.518 39.130 0.00 0.00 34.14 2.57
293 294 1.211949 TCACGAATTGGAGGGGAATCC 59.788 52.381 0.00 0.00 40.03 3.01
294 295 2.710096 TCACGAATTGGAGGGGAATC 57.290 50.000 0.00 0.00 0.00 2.52
295 296 3.010138 TCTTTCACGAATTGGAGGGGAAT 59.990 43.478 0.00 0.00 0.00 3.01
296 297 2.373836 TCTTTCACGAATTGGAGGGGAA 59.626 45.455 0.00 0.00 0.00 3.97
297 298 1.982226 TCTTTCACGAATTGGAGGGGA 59.018 47.619 0.00 0.00 0.00 4.81
298 299 2.489938 TCTTTCACGAATTGGAGGGG 57.510 50.000 0.00 0.00 0.00 4.79
299 300 2.945668 GGATCTTTCACGAATTGGAGGG 59.054 50.000 0.00 0.00 0.00 4.30
300 301 2.945668 GGGATCTTTCACGAATTGGAGG 59.054 50.000 0.00 0.00 0.00 4.30
301 302 2.945668 GGGGATCTTTCACGAATTGGAG 59.054 50.000 0.00 0.00 0.00 3.86
302 303 2.307392 TGGGGATCTTTCACGAATTGGA 59.693 45.455 0.00 0.00 0.00 3.53
303 304 2.423538 GTGGGGATCTTTCACGAATTGG 59.576 50.000 0.00 0.00 0.00 3.16
304 305 3.347216 AGTGGGGATCTTTCACGAATTG 58.653 45.455 0.00 0.00 36.60 2.32
305 306 3.721087 AGTGGGGATCTTTCACGAATT 57.279 42.857 0.00 0.00 36.60 2.17
306 307 3.721087 AAGTGGGGATCTTTCACGAAT 57.279 42.857 0.00 0.00 36.60 3.34
307 308 3.055385 CCTAAGTGGGGATCTTTCACGAA 60.055 47.826 0.00 0.00 36.60 3.85
308 309 2.500098 CCTAAGTGGGGATCTTTCACGA 59.500 50.000 0.00 0.00 36.60 4.35
309 310 2.906354 CCTAAGTGGGGATCTTTCACG 58.094 52.381 0.00 0.00 36.60 4.35
391 392 9.912634 CCCCTATACGAATATTAAACGTAGAAA 57.087 33.333 11.88 2.69 43.66 2.52
392 393 9.077885 ACCCCTATACGAATATTAAACGTAGAA 57.922 33.333 11.88 4.47 43.66 2.10
393 394 8.514594 CACCCCTATACGAATATTAAACGTAGA 58.485 37.037 11.88 7.75 43.66 2.59
394 395 8.299570 ACACCCCTATACGAATATTAAACGTAG 58.700 37.037 11.88 3.65 43.66 3.51
395 396 8.081633 CACACCCCTATACGAATATTAAACGTA 58.918 37.037 9.49 9.49 44.32 3.57
396 397 6.925165 CACACCCCTATACGAATATTAAACGT 59.075 38.462 6.04 6.04 42.70 3.99
397 398 6.366877 CCACACCCCTATACGAATATTAAACG 59.633 42.308 0.00 0.00 0.00 3.60
398 399 7.444299 TCCACACCCCTATACGAATATTAAAC 58.556 38.462 0.00 0.00 0.00 2.01
399 400 7.615039 TCCACACCCCTATACGAATATTAAA 57.385 36.000 0.00 0.00 0.00 1.52
400 401 6.295462 GCTCCACACCCCTATACGAATATTAA 60.295 42.308 0.00 0.00 0.00 1.40
401 402 5.186409 GCTCCACACCCCTATACGAATATTA 59.814 44.000 0.00 0.00 0.00 0.98
402 403 4.020485 GCTCCACACCCCTATACGAATATT 60.020 45.833 0.00 0.00 0.00 1.28
403 404 3.514309 GCTCCACACCCCTATACGAATAT 59.486 47.826 0.00 0.00 0.00 1.28
404 405 2.895404 GCTCCACACCCCTATACGAATA 59.105 50.000 0.00 0.00 0.00 1.75
405 406 1.692519 GCTCCACACCCCTATACGAAT 59.307 52.381 0.00 0.00 0.00 3.34
406 407 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
407 408 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
408 409 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
418 419 3.640407 GCTCCTGGGTGCTCCACA 61.640 66.667 7.20 1.73 41.46 4.17
419 420 3.325753 AGCTCCTGGGTGCTCCAC 61.326 66.667 10.00 0.00 40.37 4.02
431 432 1.398390 CGCAAAATACACAGGAGCTCC 59.602 52.381 26.22 26.22 0.00 4.70
432 433 2.346803 TCGCAAAATACACAGGAGCTC 58.653 47.619 4.71 4.71 0.00 4.09
433 434 2.472695 TCGCAAAATACACAGGAGCT 57.527 45.000 0.00 0.00 0.00 4.09
434 435 2.939103 AGATCGCAAAATACACAGGAGC 59.061 45.455 0.00 0.00 0.00 4.70
435 436 6.478588 GTTTAGATCGCAAAATACACAGGAG 58.521 40.000 0.00 0.00 0.00 3.69
436 437 5.062934 CGTTTAGATCGCAAAATACACAGGA 59.937 40.000 0.00 0.00 0.00 3.86
437 438 5.255596 CGTTTAGATCGCAAAATACACAGG 58.744 41.667 0.00 0.00 0.00 4.00
453 454 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
454 455 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
455 456 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
456 457 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
457 458 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
458 459 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
459 460 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
460 461 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
461 462 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
462 463 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
463 464 8.518702 GGTACTCCCTCCGTAAACTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
464 465 8.227507 AGGTACTCCCTCCGTAAACTAATATAA 58.772 37.037 0.00 0.00 40.71 0.98
465 466 7.759607 AGGTACTCCCTCCGTAAACTAATATA 58.240 38.462 0.00 0.00 40.71 0.86
466 467 6.618501 AGGTACTCCCTCCGTAAACTAATAT 58.381 40.000 0.00 0.00 40.71 1.28
467 468 6.018433 AGGTACTCCCTCCGTAAACTAATA 57.982 41.667 0.00 0.00 40.71 0.98
468 469 4.876580 AGGTACTCCCTCCGTAAACTAAT 58.123 43.478 0.00 0.00 40.71 1.73
469 470 4.322057 AGGTACTCCCTCCGTAAACTAA 57.678 45.455 0.00 0.00 40.71 2.24
470 471 5.193679 GTTAGGTACTCCCTCCGTAAACTA 58.806 45.833 0.00 0.00 44.81 2.24
471 472 2.915657 AGGTACTCCCTCCGTAAACT 57.084 50.000 0.00 0.00 40.71 2.66
472 473 3.763897 TGTTAGGTACTCCCTCCGTAAAC 59.236 47.826 0.00 0.00 44.81 2.01
473 474 4.019174 CTGTTAGGTACTCCCTCCGTAAA 58.981 47.826 0.00 0.00 44.81 2.01
474 475 3.624777 CTGTTAGGTACTCCCTCCGTAA 58.375 50.000 0.00 0.00 44.81 3.18
475 476 2.684927 GCTGTTAGGTACTCCCTCCGTA 60.685 54.545 0.00 0.00 44.81 4.02
476 477 1.959028 GCTGTTAGGTACTCCCTCCGT 60.959 57.143 0.00 0.00 44.81 4.69
477 478 0.745468 GCTGTTAGGTACTCCCTCCG 59.255 60.000 0.00 0.00 44.81 4.63
478 479 2.162264 AGCTGTTAGGTACTCCCTCC 57.838 55.000 0.00 0.00 44.81 4.30
479 480 4.021916 TGTTAGCTGTTAGGTACTCCCTC 58.978 47.826 0.00 0.00 44.81 4.30
481 482 5.832060 TCTATGTTAGCTGTTAGGTACTCCC 59.168 44.000 0.00 0.00 41.75 4.30
482 483 6.956202 TCTATGTTAGCTGTTAGGTACTCC 57.044 41.667 0.00 0.00 41.75 3.85
483 484 8.732531 CCTATCTATGTTAGCTGTTAGGTACTC 58.267 40.741 0.00 0.00 41.75 2.59
522 523 5.107837 CGTGGTTATTATCATCGAGTTGCTC 60.108 44.000 0.00 0.00 0.00 4.26
524 525 4.743151 TCGTGGTTATTATCATCGAGTTGC 59.257 41.667 0.00 0.00 0.00 4.17
530 531 9.906111 CAATGATTATCGTGGTTATTATCATCG 57.094 33.333 0.00 0.00 33.96 3.84
546 547 6.017852 GTCCTCCTCCGAAAACAATGATTATC 60.018 42.308 0.00 0.00 0.00 1.75
547 548 5.823045 GTCCTCCTCCGAAAACAATGATTAT 59.177 40.000 0.00 0.00 0.00 1.28
548 549 5.183228 GTCCTCCTCCGAAAACAATGATTA 58.817 41.667 0.00 0.00 0.00 1.75
564 565 1.289530 AGATTTCCTCCTCGTCCTCCT 59.710 52.381 0.00 0.00 0.00 3.69
565 566 1.684450 GAGATTTCCTCCTCGTCCTCC 59.316 57.143 0.00 0.00 35.87 4.30
611 612 9.895138 TGATCATGATCTAAGTTGAGATTTCAA 57.105 29.630 30.65 6.76 38.49 2.69
612 613 9.543783 CTGATCATGATCTAAGTTGAGATTTCA 57.456 33.333 30.65 10.10 36.27 2.69
614 615 7.444792 GGCTGATCATGATCTAAGTTGAGATTT 59.555 37.037 30.65 0.00 36.27 2.17
615 616 6.935771 GGCTGATCATGATCTAAGTTGAGATT 59.064 38.462 30.65 0.00 36.27 2.40
616 617 6.465948 GGCTGATCATGATCTAAGTTGAGAT 58.534 40.000 30.65 0.00 38.94 2.75
620 621 3.744942 CCGGCTGATCATGATCTAAGTTG 59.255 47.826 30.65 18.08 38.60 3.16
621 622 3.805108 GCCGGCTGATCATGATCTAAGTT 60.805 47.826 30.65 0.00 38.60 2.66
622 623 2.289320 GCCGGCTGATCATGATCTAAGT 60.289 50.000 30.65 0.19 38.60 2.24
625 626 0.610174 GGCCGGCTGATCATGATCTA 59.390 55.000 30.65 18.51 38.60 1.98
626 627 1.374190 GGCCGGCTGATCATGATCT 59.626 57.895 30.65 2.60 38.60 2.75
628 629 2.031616 CGGCCGGCTGATCATGAT 59.968 61.111 32.31 8.25 0.00 2.45
629 630 3.153781 TCGGCCGGCTGATCATGA 61.154 61.111 34.14 11.33 0.00 3.07
630 631 2.969238 GTCGGCCGGCTGATCATG 60.969 66.667 38.99 14.21 33.49 3.07
756 1222 1.883926 GGAGCAAACCGTATTGTTGGT 59.116 47.619 0.00 0.00 41.20 3.67
757 1223 1.135803 CGGAGCAAACCGTATTGTTGG 60.136 52.381 8.46 0.00 46.70 3.77
758 1224 2.241259 CGGAGCAAACCGTATTGTTG 57.759 50.000 8.46 0.00 46.70 3.33
767 1233 0.601841 TTCGGACTTCGGAGCAAACC 60.602 55.000 0.00 0.00 39.77 3.27
768 1234 0.511653 GTTCGGACTTCGGAGCAAAC 59.488 55.000 0.00 0.00 39.77 2.93
769 1235 0.105224 TGTTCGGACTTCGGAGCAAA 59.895 50.000 0.00 0.00 39.77 3.68
770 1236 0.105224 TTGTTCGGACTTCGGAGCAA 59.895 50.000 10.64 10.64 41.42 3.91
771 1237 0.320374 ATTGTTCGGACTTCGGAGCA 59.680 50.000 0.00 0.13 39.77 4.26
772 1238 2.288961 TATTGTTCGGACTTCGGAGC 57.711 50.000 0.00 0.00 39.77 4.70
773 1239 4.267928 GTGATTATTGTTCGGACTTCGGAG 59.732 45.833 0.00 0.00 39.77 4.63
774 1240 4.178540 GTGATTATTGTTCGGACTTCGGA 58.821 43.478 0.00 0.00 39.77 4.55
775 1241 3.000078 CGTGATTATTGTTCGGACTTCGG 60.000 47.826 0.00 0.00 39.77 4.30
776 1242 3.855379 TCGTGATTATTGTTCGGACTTCG 59.145 43.478 0.00 0.00 40.90 3.79
777 1243 5.773239 TTCGTGATTATTGTTCGGACTTC 57.227 39.130 0.00 0.00 0.00 3.01
778 1244 5.106830 GGTTTCGTGATTATTGTTCGGACTT 60.107 40.000 0.00 0.00 0.00 3.01
779 1245 4.390909 GGTTTCGTGATTATTGTTCGGACT 59.609 41.667 0.00 0.00 0.00 3.85
780 1246 4.390909 AGGTTTCGTGATTATTGTTCGGAC 59.609 41.667 0.00 0.00 0.00 4.79
781 1247 4.571919 AGGTTTCGTGATTATTGTTCGGA 58.428 39.130 0.00 0.00 0.00 4.55
782 1248 4.939509 AGGTTTCGTGATTATTGTTCGG 57.060 40.909 0.00 0.00 0.00 4.30
783 1249 7.617533 AAAAAGGTTTCGTGATTATTGTTCG 57.382 32.000 0.00 0.00 0.00 3.95
809 1275 4.378978 CCGTGCGATTTGATACTCCAAAAA 60.379 41.667 0.00 0.00 39.20 1.94
810 1276 3.126171 CCGTGCGATTTGATACTCCAAAA 59.874 43.478 0.00 0.00 39.20 2.44
811 1277 2.675844 CCGTGCGATTTGATACTCCAAA 59.324 45.455 0.00 0.00 39.93 3.28
812 1278 2.093921 TCCGTGCGATTTGATACTCCAA 60.094 45.455 0.00 0.00 0.00 3.53
813 1279 1.478916 TCCGTGCGATTTGATACTCCA 59.521 47.619 0.00 0.00 0.00 3.86
814 1280 2.218953 TCCGTGCGATTTGATACTCC 57.781 50.000 0.00 0.00 0.00 3.85
815 1281 3.187700 AGTTCCGTGCGATTTGATACTC 58.812 45.455 0.00 0.00 0.00 2.59
816 1282 3.247006 AGTTCCGTGCGATTTGATACT 57.753 42.857 0.00 0.00 0.00 2.12
817 1283 3.485216 CCAAGTTCCGTGCGATTTGATAC 60.485 47.826 0.00 0.00 0.00 2.24
818 1284 2.675844 CCAAGTTCCGTGCGATTTGATA 59.324 45.455 0.00 0.00 0.00 2.15
819 1285 1.468520 CCAAGTTCCGTGCGATTTGAT 59.531 47.619 0.00 0.00 0.00 2.57
820 1286 0.871722 CCAAGTTCCGTGCGATTTGA 59.128 50.000 0.00 0.00 0.00 2.69
821 1287 0.871722 TCCAAGTTCCGTGCGATTTG 59.128 50.000 0.00 0.00 0.00 2.32
822 1288 0.872388 GTCCAAGTTCCGTGCGATTT 59.128 50.000 0.00 0.00 0.00 2.17
823 1289 1.289109 CGTCCAAGTTCCGTGCGATT 61.289 55.000 0.00 0.00 0.00 3.34
824 1290 1.736645 CGTCCAAGTTCCGTGCGAT 60.737 57.895 0.00 0.00 0.00 4.58
825 1291 2.355363 CGTCCAAGTTCCGTGCGA 60.355 61.111 0.00 0.00 0.00 5.10
826 1292 4.072088 GCGTCCAAGTTCCGTGCG 62.072 66.667 0.00 0.00 0.00 5.34
914 1383 0.108709 TTATACACACGACACGCCCC 60.109 55.000 0.00 0.00 0.00 5.80
955 1430 0.602905 TGTCTGTGCGTCGAGAGAGA 60.603 55.000 0.00 0.00 43.49 3.10
956 1431 0.179202 CTGTCTGTGCGTCGAGAGAG 60.179 60.000 0.00 0.00 43.49 3.20
957 1432 0.602905 TCTGTCTGTGCGTCGAGAGA 60.603 55.000 0.00 0.00 38.16 3.10
958 1433 0.238553 TTCTGTCTGTGCGTCGAGAG 59.761 55.000 0.00 0.00 0.00 3.20
1194 1674 1.541672 GGCTCCTCCTCCTCTAGCT 59.458 63.158 0.00 0.00 33.67 3.32
1197 1679 1.696674 TCCGGCTCCTCCTCCTCTA 60.697 63.158 0.00 0.00 0.00 2.43
1468 1980 1.444553 GAGATAATCGAGGCGCCCG 60.445 63.158 26.15 25.72 0.00 6.13
1532 2045 8.642935 AACAAAGGGGAAGAAAATTTCAAAAA 57.357 26.923 8.55 0.00 0.00 1.94
1533 2046 8.642935 AAACAAAGGGGAAGAAAATTTCAAAA 57.357 26.923 8.55 0.00 0.00 2.44
1534 2047 8.518702 CAAAACAAAGGGGAAGAAAATTTCAAA 58.481 29.630 8.55 0.00 0.00 2.69
1535 2048 7.362487 GCAAAACAAAGGGGAAGAAAATTTCAA 60.362 33.333 8.55 0.00 0.00 2.69
1536 2049 6.094742 GCAAAACAAAGGGGAAGAAAATTTCA 59.905 34.615 8.55 0.00 0.00 2.69
1537 2050 6.459573 GGCAAAACAAAGGGGAAGAAAATTTC 60.460 38.462 0.00 0.00 0.00 2.17
1538 2051 5.359576 GGCAAAACAAAGGGGAAGAAAATTT 59.640 36.000 0.00 0.00 0.00 1.82
1539 2052 4.887071 GGCAAAACAAAGGGGAAGAAAATT 59.113 37.500 0.00 0.00 0.00 1.82
1540 2053 4.460263 GGCAAAACAAAGGGGAAGAAAAT 58.540 39.130 0.00 0.00 0.00 1.82
1541 2054 3.371059 GGGCAAAACAAAGGGGAAGAAAA 60.371 43.478 0.00 0.00 0.00 2.29
1542 2055 2.171659 GGGCAAAACAAAGGGGAAGAAA 59.828 45.455 0.00 0.00 0.00 2.52
1543 2056 1.765904 GGGCAAAACAAAGGGGAAGAA 59.234 47.619 0.00 0.00 0.00 2.52
1563 2076 2.027377 ACACCTCCTTCTGCTGATCTTG 60.027 50.000 0.00 0.00 0.00 3.02
1567 2080 3.584848 AGTTTACACCTCCTTCTGCTGAT 59.415 43.478 0.00 0.00 0.00 2.90
1575 2088 2.576648 GGGATCCAGTTTACACCTCCTT 59.423 50.000 15.23 0.00 0.00 3.36
1595 2108 1.869132 CACTGCATACACATCCATCGG 59.131 52.381 0.00 0.00 0.00 4.18
1596 2109 1.262417 GCACTGCATACACATCCATCG 59.738 52.381 0.00 0.00 0.00 3.84
1620 2159 3.562973 ACATATCTTCATTGGAGCAAGCG 59.437 43.478 0.00 0.00 0.00 4.68
1665 2206 6.128661 TGGAGATCAACACGTTTAAAGATTCG 60.129 38.462 0.00 0.00 0.00 3.34
1770 2315 3.641437 TTCCTCACAAAAAGAATGCGG 57.359 42.857 0.00 0.00 0.00 5.69
1771 2316 5.463061 ACATTTTCCTCACAAAAAGAATGCG 59.537 36.000 0.00 0.00 0.00 4.73
1806 2351 8.992073 ACTCATGCCAATTGTTCTAAATTTTTC 58.008 29.630 4.43 0.00 0.00 2.29
1807 2352 8.776470 CACTCATGCCAATTGTTCTAAATTTTT 58.224 29.630 4.43 0.00 0.00 1.94
1815 2360 5.948162 ACTATTCACTCATGCCAATTGTTCT 59.052 36.000 4.43 0.00 0.00 3.01
1856 2407 6.134535 ACAGAAGTTAAATCATACCCCACA 57.865 37.500 0.00 0.00 0.00 4.17
1857 2408 8.747538 ATTACAGAAGTTAAATCATACCCCAC 57.252 34.615 0.00 0.00 0.00 4.61
1875 2426 7.453752 ACAAAGTCCAGTACCTCTAATTACAGA 59.546 37.037 0.00 0.00 0.00 3.41
1876 2427 7.612677 ACAAAGTCCAGTACCTCTAATTACAG 58.387 38.462 0.00 0.00 0.00 2.74
1877 2428 7.549147 ACAAAGTCCAGTACCTCTAATTACA 57.451 36.000 0.00 0.00 0.00 2.41
1878 2429 7.148457 GCAACAAAGTCCAGTACCTCTAATTAC 60.148 40.741 0.00 0.00 0.00 1.89
1880 2431 5.705905 GCAACAAAGTCCAGTACCTCTAATT 59.294 40.000 0.00 0.00 0.00 1.40
1881 2432 5.013183 AGCAACAAAGTCCAGTACCTCTAAT 59.987 40.000 0.00 0.00 0.00 1.73
1884 2435 2.706190 AGCAACAAAGTCCAGTACCTCT 59.294 45.455 0.00 0.00 0.00 3.69
1885 2436 3.127425 AGCAACAAAGTCCAGTACCTC 57.873 47.619 0.00 0.00 0.00 3.85
1886 2437 3.577805 AAGCAACAAAGTCCAGTACCT 57.422 42.857 0.00 0.00 0.00 3.08
1887 2438 4.820173 AGTAAAGCAACAAAGTCCAGTACC 59.180 41.667 0.00 0.00 0.00 3.34
1888 2439 5.526111 TCAGTAAAGCAACAAAGTCCAGTAC 59.474 40.000 0.00 0.00 0.00 2.73
1891 2442 4.552767 CGTCAGTAAAGCAACAAAGTCCAG 60.553 45.833 0.00 0.00 0.00 3.86
1892 2443 3.311322 CGTCAGTAAAGCAACAAAGTCCA 59.689 43.478 0.00 0.00 0.00 4.02
1893 2444 3.848554 GCGTCAGTAAAGCAACAAAGTCC 60.849 47.826 0.00 0.00 32.01 3.85
1895 2446 2.680841 TGCGTCAGTAAAGCAACAAAGT 59.319 40.909 0.00 0.00 39.53 2.66
1896 2447 3.291585 CTGCGTCAGTAAAGCAACAAAG 58.708 45.455 0.00 0.00 41.96 2.77
1897 2448 2.540769 GCTGCGTCAGTAAAGCAACAAA 60.541 45.455 8.32 0.00 41.96 2.83
1898 2449 1.002900 GCTGCGTCAGTAAAGCAACAA 60.003 47.619 8.32 0.00 41.96 2.83
1899 2450 0.586319 GCTGCGTCAGTAAAGCAACA 59.414 50.000 8.32 0.00 41.96 3.33
1900 2451 0.586319 TGCTGCGTCAGTAAAGCAAC 59.414 50.000 8.32 0.00 41.96 4.17
1901 2452 0.586319 GTGCTGCGTCAGTAAAGCAA 59.414 50.000 8.32 0.00 46.48 3.91
1902 2453 1.556591 CGTGCTGCGTCAGTAAAGCA 61.557 55.000 8.32 0.00 43.10 3.91
1903 2454 1.130613 CGTGCTGCGTCAGTAAAGC 59.869 57.895 8.32 0.00 33.43 3.51
1904 2455 1.130613 GCGTGCTGCGTCAGTAAAG 59.869 57.895 8.32 3.98 43.66 1.85
1924 2475 4.418401 CATGTGCCGGCCCAAACG 62.418 66.667 26.77 8.03 0.00 3.60
1934 2485 2.813908 GACGTCCGGACATGTGCC 60.814 66.667 32.80 10.03 0.00 5.01
1935 2486 2.781595 AAGGACGTCCGGACATGTGC 62.782 60.000 32.80 26.43 42.08 4.57
1936 2487 0.320421 AAAGGACGTCCGGACATGTG 60.320 55.000 32.80 19.29 42.08 3.21
1937 2488 0.395312 AAAAGGACGTCCGGACATGT 59.605 50.000 32.80 23.49 42.08 3.21
1938 2489 1.519408 AAAAAGGACGTCCGGACATG 58.481 50.000 32.80 20.38 42.08 3.21
1976 3890 9.524106 AAACGAAAACGGAAAGAAGAATTAAAT 57.476 25.926 0.00 0.00 0.00 1.40
1979 3893 8.914328 AAAAACGAAAACGGAAAGAAGAATTA 57.086 26.923 0.00 0.00 0.00 1.40
1981 3895 7.255569 AGAAAAACGAAAACGGAAAGAAGAAT 58.744 30.769 0.00 0.00 0.00 2.40
1984 3898 6.962678 TGTAGAAAAACGAAAACGGAAAGAAG 59.037 34.615 0.00 0.00 0.00 2.85
1988 3902 9.733219 ATTTATGTAGAAAAACGAAAACGGAAA 57.267 25.926 0.00 0.00 0.00 3.13
2019 3975 8.718102 TCATTTTCAAACCGTTTTTATTTCCA 57.282 26.923 0.00 0.00 0.00 3.53
2020 3976 9.989869 TTTCATTTTCAAACCGTTTTTATTTCC 57.010 25.926 0.00 0.00 0.00 3.13
2031 3987 9.500864 AACATTTCATTTTTCATTTTCAAACCG 57.499 25.926 0.00 0.00 0.00 4.44
2168 4140 9.727627 GCCAAATTTTGTTCAATTTCATTAACA 57.272 25.926 8.26 0.00 34.70 2.41
2169 4141 9.179552 GGCCAAATTTTGTTCAATTTCATTAAC 57.820 29.630 0.00 0.00 34.70 2.01
2170 4142 8.906867 TGGCCAAATTTTGTTCAATTTCATTAA 58.093 25.926 0.61 0.00 34.70 1.40
2171 4143 8.455903 TGGCCAAATTTTGTTCAATTTCATTA 57.544 26.923 0.61 0.00 34.70 1.90
2172 4144 7.344095 TGGCCAAATTTTGTTCAATTTCATT 57.656 28.000 0.61 0.00 34.70 2.57
2173 4145 6.956202 TGGCCAAATTTTGTTCAATTTCAT 57.044 29.167 0.61 0.00 34.70 2.57
2174 4146 6.764308 TTGGCCAAATTTTGTTCAATTTCA 57.236 29.167 17.98 0.00 34.70 2.69
2175 4147 9.741647 TTAATTGGCCAAATTTTGTTCAATTTC 57.258 25.926 24.71 6.71 39.59 2.17
2302 4275 9.869844 TTTAACGAACATTTTTAAAATGCATGG 57.130 25.926 24.90 18.37 0.00 3.66
2321 4294 5.770663 TGGGGACATTTTTCTGATTTAACGA 59.229 36.000 0.00 0.00 33.40 3.85
2325 4298 6.208599 GTCAGTGGGGACATTTTTCTGATTTA 59.791 38.462 0.00 0.00 46.14 1.40
2344 8137 1.452110 TCCAATCCGCAATGTCAGTG 58.548 50.000 0.00 0.00 0.00 3.66
2348 8141 1.528586 CTCGATCCAATCCGCAATGTC 59.471 52.381 0.00 0.00 0.00 3.06
2365 8158 6.169419 TCAAGACAACAAAATCTATGCTCG 57.831 37.500 0.00 0.00 0.00 5.03
2375 8168 8.462811 TGCTTAACTGTATTCAAGACAACAAAA 58.537 29.630 0.00 0.00 0.00 2.44
2388 8181 5.106157 GCACCAGATGTTGCTTAACTGTATT 60.106 40.000 0.00 0.00 0.00 1.89
2464 8261 7.428020 TCAGAAAAACTTGATCTCCAACAATG 58.572 34.615 0.00 0.00 0.00 2.82
2465 8262 7.587037 TCAGAAAAACTTGATCTCCAACAAT 57.413 32.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.