Multiple sequence alignment - TraesCS1A01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G409700 chr1A 100.000 3274 0 0 1 3274 571280361 571283634 0.000000e+00 6047.0
1 TraesCS1A01G409700 chr1A 88.076 847 58 35 1 828 571349267 571348445 0.000000e+00 965.0
2 TraesCS1A01G409700 chr1D 93.688 808 23 18 700 1493 475502320 475503113 0.000000e+00 1184.0
3 TraesCS1A01G409700 chr1D 90.000 910 34 24 2062 2956 475503392 475504259 0.000000e+00 1123.0
4 TraesCS1A01G409700 chr1D 93.645 598 28 7 82 674 475501353 475501945 0.000000e+00 885.0
5 TraesCS1A01G409700 chr1D 90.203 296 20 4 1530 1824 475503106 475503393 8.580000e-101 377.0
6 TraesCS1A01G409700 chr1D 98.851 87 1 0 3188 3274 475504255 475504341 4.370000e-34 156.0
7 TraesCS1A01G409700 chr1D 89.091 55 5 1 1253 1307 46107121 46107068 2.110000e-07 67.6
8 TraesCS1A01G409700 chr1D 85.714 63 5 3 1 59 475501345 475501407 2.730000e-06 63.9
9 TraesCS1A01G409700 chr1B 93.141 729 33 11 746 1458 661508321 661509048 0.000000e+00 1053.0
10 TraesCS1A01G409700 chr1B 85.923 888 69 30 1853 2724 661509418 661510265 0.000000e+00 896.0
11 TraesCS1A01G409700 chr1B 92.586 526 29 7 126 644 661507423 661507945 0.000000e+00 747.0
12 TraesCS1A01G409700 chr1B 76.991 565 71 34 287 824 661567363 661566831 5.380000e-68 268.0
13 TraesCS1A01G409700 chr1B 86.463 229 9 4 2725 2953 661510332 661510538 7.060000e-57 231.0
14 TraesCS1A01G409700 chr1B 90.625 128 7 4 1552 1679 661509057 661509179 7.270000e-37 165.0
15 TraesCS1A01G409700 chr1B 91.597 119 8 2 1723 1840 661509175 661509292 2.610000e-36 163.0
16 TraesCS1A01G409700 chr1B 95.604 91 3 1 3184 3274 661510534 661510623 9.470000e-31 145.0
17 TraesCS1A01G409700 chr1B 87.302 63 4 3 1 59 293811173 293811111 5.860000e-08 69.4
18 TraesCS1A01G409700 chr4B 99.583 240 1 0 2955 3194 658009608 658009847 3.880000e-119 438.0
19 TraesCS1A01G409700 chr5B 99.580 238 1 0 2954 3191 609258672 609258435 5.020000e-118 435.0
20 TraesCS1A01G409700 chr5B 85.714 63 5 3 1 59 548544935 548544997 2.730000e-06 63.9
21 TraesCS1A01G409700 chr6B 99.149 235 2 0 2954 3188 700100359 700100593 1.090000e-114 424.0
22 TraesCS1A01G409700 chr6B 98.718 234 3 0 2955 3188 19636411 19636178 1.820000e-112 416.0
23 TraesCS1A01G409700 chr6B 98.291 234 4 0 2955 3188 19599815 19599582 8.450000e-111 411.0
24 TraesCS1A01G409700 chr4A 98.326 239 4 0 2950 3188 593458568 593458806 1.400000e-113 420.0
25 TraesCS1A01G409700 chr2B 99.561 228 1 0 2964 3191 767952815 767952588 1.820000e-112 416.0
26 TraesCS1A01G409700 chr5A 97.908 239 5 0 2954 3192 54342213 54342451 6.540000e-112 414.0
27 TraesCS1A01G409700 chr5A 85.714 63 5 3 1 59 541189922 541189984 2.730000e-06 63.9
28 TraesCS1A01G409700 chr6D 98.291 234 4 0 2955 3188 169213575 169213808 8.450000e-111 411.0
29 TraesCS1A01G409700 chr6D 92.958 71 5 0 1244 1314 445057445 445057375 1.610000e-18 104.0
30 TraesCS1A01G409700 chr6D 88.333 60 6 1 1250 1309 112956263 112956321 1.630000e-08 71.3
31 TraesCS1A01G409700 chr5D 87.586 145 15 3 515 659 289584847 289584988 7.270000e-37 165.0
32 TraesCS1A01G409700 chr4D 92.453 53 4 0 1257 1309 321815851 321815903 3.500000e-10 76.8
33 TraesCS1A01G409700 chr4D 87.302 63 7 1 1250 1312 442750855 442750794 1.630000e-08 71.3
34 TraesCS1A01G409700 chr7D 90.196 51 5 0 1257 1307 134503747 134503797 2.110000e-07 67.6
35 TraesCS1A01G409700 chr3D 85.714 63 5 3 1 59 139732518 139732456 2.730000e-06 63.9
36 TraesCS1A01G409700 chr3B 85.714 63 5 3 1 59 231188189 231188251 2.730000e-06 63.9
37 TraesCS1A01G409700 chr3B 85.484 62 5 3 2 59 761987262 761987323 9.810000e-06 62.1
38 TraesCS1A01G409700 chr7B 97.143 35 1 0 1 35 681949622 681949588 3.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G409700 chr1A 571280361 571283634 3273 False 6047.000000 6047 100.000000 1 3274 1 chr1A.!!$F1 3273
1 TraesCS1A01G409700 chr1A 571348445 571349267 822 True 965.000000 965 88.076000 1 828 1 chr1A.!!$R1 827
2 TraesCS1A01G409700 chr1D 475501345 475504341 2996 False 631.483333 1184 92.016833 1 3274 6 chr1D.!!$F1 3273
3 TraesCS1A01G409700 chr1B 661507423 661510623 3200 False 485.714286 1053 90.848429 126 3274 7 chr1B.!!$F1 3148
4 TraesCS1A01G409700 chr1B 661566831 661567363 532 True 268.000000 268 76.991000 287 824 1 chr1B.!!$R2 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1390 0.395311 TAAGGATCAGACCGGAGCGT 60.395 55.0 9.46 0.0 34.73 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2961 3599 0.037046 CCTTTGGCAGCCATCCAAAC 60.037 55.0 17.09 0.0 45.6 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
495 505 1.937108 GCGGAAGTCAGAGAACACCAG 60.937 57.143 0.00 0.00 0.00 4.00
500 510 0.959553 GTCAGAGAACACCAGACGGA 59.040 55.000 0.00 0.00 35.59 4.69
501 511 1.068194 GTCAGAGAACACCAGACGGAG 60.068 57.143 0.00 0.00 35.59 4.63
503 513 1.079750 GAGAACACCAGACGGAGGC 60.080 63.158 0.00 0.00 35.59 4.70
504 514 2.432628 GAACACCAGACGGAGGCG 60.433 66.667 0.00 0.00 35.59 5.52
506 516 4.988716 ACACCAGACGGAGGCGGA 62.989 66.667 0.00 0.00 35.59 5.54
528 549 2.501610 CGCAAGGGGTAGGAGAGC 59.498 66.667 0.00 0.00 0.00 4.09
532 553 4.862823 AGGGGTAGGAGAGCGGGC 62.863 72.222 0.00 0.00 0.00 6.13
551 572 4.065281 GCGGTACCGAGGCAGTGT 62.065 66.667 37.62 0.00 42.83 3.55
849 1266 3.394836 GCCCTTGCTCTCTCCCGT 61.395 66.667 0.00 0.00 33.53 5.28
850 1267 2.896443 CCCTTGCTCTCTCCCGTC 59.104 66.667 0.00 0.00 0.00 4.79
851 1268 2.726351 CCCTTGCTCTCTCCCGTCC 61.726 68.421 0.00 0.00 0.00 4.79
855 1272 4.779733 GCTCTCTCCCGTCCCCCA 62.780 72.222 0.00 0.00 0.00 4.96
859 1276 1.075525 CTCTCCCGTCCCCCACATA 60.076 63.158 0.00 0.00 0.00 2.29
914 1331 2.357760 GCAACTTACGGCCCGACA 60.358 61.111 11.71 0.00 0.00 4.35
915 1332 2.388232 GCAACTTACGGCCCGACAG 61.388 63.158 11.71 7.54 0.00 3.51
918 1335 0.601841 AACTTACGGCCCGACAGTTG 60.602 55.000 19.29 3.63 33.86 3.16
920 1337 0.736325 CTTACGGCCCGACAGTTGAG 60.736 60.000 11.71 0.00 0.00 3.02
921 1338 1.466025 TTACGGCCCGACAGTTGAGT 61.466 55.000 11.71 0.00 0.00 3.41
964 1390 0.395311 TAAGGATCAGACCGGAGCGT 60.395 55.000 9.46 0.00 34.73 5.07
1011 1437 3.272334 GCGACGATGTCCATGGCC 61.272 66.667 6.96 0.00 0.00 5.36
1449 1883 4.081752 TCTCTCTGACTGAAGAGGAATTGC 60.082 45.833 10.66 0.00 43.36 3.56
1485 1919 2.266554 GAGCGATTCTGGTTCAGACAG 58.733 52.381 0.00 0.00 40.46 3.51
1486 1920 1.620819 AGCGATTCTGGTTCAGACAGT 59.379 47.619 0.00 0.00 40.46 3.55
1487 1921 2.037772 AGCGATTCTGGTTCAGACAGTT 59.962 45.455 0.00 0.00 40.46 3.16
1488 1922 2.413453 GCGATTCTGGTTCAGACAGTTC 59.587 50.000 0.00 0.00 40.46 3.01
1489 1923 3.862642 GCGATTCTGGTTCAGACAGTTCT 60.863 47.826 0.00 0.00 40.46 3.01
1490 1924 4.310769 CGATTCTGGTTCAGACAGTTCTT 58.689 43.478 0.00 0.00 40.46 2.52
1491 1925 4.151335 CGATTCTGGTTCAGACAGTTCTTG 59.849 45.833 0.00 0.00 40.46 3.02
1492 1926 2.838736 TCTGGTTCAGACAGTTCTTGC 58.161 47.619 0.00 0.00 35.39 4.01
1493 1927 2.435805 TCTGGTTCAGACAGTTCTTGCT 59.564 45.455 0.00 0.00 35.39 3.91
1494 1928 2.805099 CTGGTTCAGACAGTTCTTGCTC 59.195 50.000 0.00 0.00 32.44 4.26
1495 1929 2.147150 GGTTCAGACAGTTCTTGCTCC 58.853 52.381 0.00 0.00 0.00 4.70
1496 1930 2.224402 GGTTCAGACAGTTCTTGCTCCT 60.224 50.000 0.00 0.00 0.00 3.69
1497 1931 2.805099 GTTCAGACAGTTCTTGCTCCTG 59.195 50.000 0.00 0.00 0.00 3.86
1498 1932 1.155042 CAGACAGTTCTTGCTCCTGC 58.845 55.000 0.00 0.00 40.20 4.85
1499 1933 1.055040 AGACAGTTCTTGCTCCTGCT 58.945 50.000 0.00 0.00 40.48 4.24
1500 1934 1.419387 AGACAGTTCTTGCTCCTGCTT 59.581 47.619 0.00 0.00 40.48 3.91
1501 1935 1.803555 GACAGTTCTTGCTCCTGCTTC 59.196 52.381 0.00 0.00 40.48 3.86
1502 1936 0.795085 CAGTTCTTGCTCCTGCTTCG 59.205 55.000 0.00 0.00 40.48 3.79
1503 1937 0.321122 AGTTCTTGCTCCTGCTTCGG 60.321 55.000 0.00 0.00 40.48 4.30
1504 1938 1.672356 TTCTTGCTCCTGCTTCGGC 60.672 57.895 0.00 0.00 40.48 5.54
1505 1939 2.046507 CTTGCTCCTGCTTCGGCT 60.047 61.111 0.00 0.00 42.37 5.52
1506 1940 2.359107 TTGCTCCTGCTTCGGCTG 60.359 61.111 0.00 0.00 42.37 4.85
1507 1941 2.793160 CTTGCTCCTGCTTCGGCTGA 62.793 60.000 0.00 0.00 41.50 4.26
1508 1942 2.046892 GCTCCTGCTTCGGCTGAA 60.047 61.111 7.94 7.94 41.50 3.02
1509 1943 1.451028 GCTCCTGCTTCGGCTGAAT 60.451 57.895 8.78 0.00 41.50 2.57
1510 1944 0.179073 GCTCCTGCTTCGGCTGAATA 60.179 55.000 8.78 0.24 41.50 1.75
1511 1945 1.743772 GCTCCTGCTTCGGCTGAATAA 60.744 52.381 8.78 0.00 41.50 1.40
1512 1946 2.843701 CTCCTGCTTCGGCTGAATAAT 58.156 47.619 8.78 0.00 41.50 1.28
1513 1947 2.547211 CTCCTGCTTCGGCTGAATAATG 59.453 50.000 8.78 0.00 41.50 1.90
1514 1948 1.002033 CCTGCTTCGGCTGAATAATGC 60.002 52.381 8.78 9.29 41.50 3.56
1515 1949 0.657312 TGCTTCGGCTGAATAATGCG 59.343 50.000 8.78 0.00 42.37 4.73
1516 1950 0.937304 GCTTCGGCTGAATAATGCGA 59.063 50.000 8.78 0.00 38.08 5.10
1517 1951 1.333258 GCTTCGGCTGAATAATGCGAC 60.333 52.381 8.78 0.00 38.08 5.19
1518 1952 0.927537 TTCGGCTGAATAATGCGACG 59.072 50.000 3.13 0.00 0.00 5.12
1519 1953 0.101579 TCGGCTGAATAATGCGACGA 59.898 50.000 0.00 0.00 0.00 4.20
1520 1954 1.139989 CGGCTGAATAATGCGACGAT 58.860 50.000 0.00 0.00 0.00 3.73
1521 1955 1.136529 CGGCTGAATAATGCGACGATG 60.137 52.381 0.00 0.00 0.00 3.84
1522 1956 1.398960 GGCTGAATAATGCGACGATGC 60.399 52.381 0.00 0.00 0.00 3.91
1523 1957 1.398960 GCTGAATAATGCGACGATGCC 60.399 52.381 0.00 0.00 0.00 4.40
1524 1958 1.866601 CTGAATAATGCGACGATGCCA 59.133 47.619 0.00 0.00 0.00 4.92
1525 1959 1.866601 TGAATAATGCGACGATGCCAG 59.133 47.619 0.00 0.00 0.00 4.85
1526 1960 1.867233 GAATAATGCGACGATGCCAGT 59.133 47.619 0.00 0.00 0.00 4.00
1527 1961 1.220529 ATAATGCGACGATGCCAGTG 58.779 50.000 0.00 0.00 0.00 3.66
1528 1962 0.108377 TAATGCGACGATGCCAGTGT 60.108 50.000 0.00 0.00 0.00 3.55
1541 1975 1.027357 CCAGTGTGTTCTTGCAGCTT 58.973 50.000 0.00 0.00 0.00 3.74
1586 2020 1.651138 CGACTTGTCAGATTGCTCGAC 59.349 52.381 1.59 0.00 0.00 4.20
1636 2070 5.278660 CCAAGGATTATGGTTCAGCTAATGC 60.279 44.000 0.00 0.00 34.72 3.56
1649 2083 3.351020 GCTAATGCTCTGCAAATCCTG 57.649 47.619 0.00 0.00 43.62 3.86
1686 2120 3.748863 CAGTGCGATTACTGCTCCT 57.251 52.632 2.67 0.00 41.31 3.69
1687 2121 2.871182 CAGTGCGATTACTGCTCCTA 57.129 50.000 2.67 0.00 41.31 2.94
1688 2122 2.464865 CAGTGCGATTACTGCTCCTAC 58.535 52.381 2.67 0.00 41.31 3.18
1694 2128 5.232414 GTGCGATTACTGCTCCTACTTTTAG 59.768 44.000 0.00 0.00 0.00 1.85
1701 2135 6.031751 ACTGCTCCTACTTTTAGTCAGAAG 57.968 41.667 0.00 0.00 0.00 2.85
1706 2140 6.592220 GCTCCTACTTTTAGTCAGAAGGAAAG 59.408 42.308 0.00 0.00 31.04 2.62
1708 2142 5.644206 CCTACTTTTAGTCAGAAGGAAAGGC 59.356 44.000 0.00 0.00 32.95 4.35
1709 2143 4.399219 ACTTTTAGTCAGAAGGAAAGGCC 58.601 43.478 0.00 0.00 32.95 5.19
1710 2144 3.434940 TTTAGTCAGAAGGAAAGGCCC 57.565 47.619 0.00 0.00 37.37 5.80
1728 2162 2.423373 GCCCTGCCCTTTTCAGATCATA 60.423 50.000 0.00 0.00 33.54 2.15
1743 2177 9.591792 TTTCAGATCATAACTACTGACTTCATG 57.408 33.333 0.00 0.00 38.77 3.07
1767 2203 2.829384 GCACCCCTGACCACCTGAA 61.829 63.158 0.00 0.00 0.00 3.02
1809 2245 4.771577 TCCTCATAACACCAAATGCAATGT 59.228 37.500 0.00 0.00 0.00 2.71
1815 2251 4.148128 ACACCAAATGCAATGTTTCCAA 57.852 36.364 0.00 0.00 0.00 3.53
1825 2261 4.809958 TGCAATGTTTCCAATGTGTTCTTG 59.190 37.500 0.00 0.00 0.00 3.02
1866 2415 7.331934 CAGTGTAGCAACTAGTAATTGACATGT 59.668 37.037 0.00 0.00 0.00 3.21
1872 2421 7.826252 AGCAACTAGTAATTGACATGTCAGATT 59.174 33.333 26.48 25.92 41.13 2.40
1876 2425 7.826252 ACTAGTAATTGACATGTCAGATTGCTT 59.174 33.333 32.39 23.27 41.13 3.91
1890 2439 5.359576 TCAGATTGCTTAACAGTTGGTTGTT 59.640 36.000 0.00 0.00 43.34 2.83
1895 2444 5.971763 TGCTTAACAGTTGGTTGTTTTCAT 58.028 33.333 0.00 0.00 41.31 2.57
1900 2449 8.833231 TTAACAGTTGGTTGTTTTCATTTTCA 57.167 26.923 0.00 0.00 41.31 2.69
1927 2476 1.250328 TTGTGGCTCTGCAAATCCTG 58.750 50.000 0.00 0.00 0.00 3.86
1969 2518 6.801862 GCGAATGCAAATACTACTGTTCTTTT 59.198 34.615 0.00 0.00 42.15 2.27
2050 2599 8.726068 TCTGACTAGCTGAATTCTATAAGATCG 58.274 37.037 7.05 0.00 0.00 3.69
2066 2615 9.566530 CTATAAGATCGAAACTACATCCTCATG 57.433 37.037 0.00 0.00 35.92 3.07
2067 2616 5.207110 AGATCGAAACTACATCCTCATGG 57.793 43.478 0.00 0.00 33.82 3.66
2076 2625 3.834489 ACATCCTCATGGCACTAGAAG 57.166 47.619 0.00 0.00 33.82 2.85
2085 2634 2.436417 TGGCACTAGAAGGCATGAAAC 58.564 47.619 11.01 0.00 36.56 2.78
2099 2648 3.423571 CATGAAACTCTTTGCTGATCGC 58.576 45.455 0.00 3.07 39.77 4.58
2117 2667 2.880268 TCGCCTGAATCATTATTGCCAG 59.120 45.455 0.00 0.00 0.00 4.85
2186 2736 1.686325 GATACCTGAAGAGCGGCCCA 61.686 60.000 0.00 0.00 0.00 5.36
2238 2788 2.105930 GCTACGCCCTGAGCAGAG 59.894 66.667 0.00 0.00 44.04 3.35
2279 2829 1.004918 CGGCGGACCCTGATAATCC 60.005 63.158 0.00 0.00 0.00 3.01
2280 2830 1.375326 GGCGGACCCTGATAATCCC 59.625 63.158 0.00 0.00 0.00 3.85
2281 2831 1.375326 GCGGACCCTGATAATCCCC 59.625 63.158 0.00 0.00 0.00 4.81
2283 2833 1.827399 CGGACCCTGATAATCCCCCG 61.827 65.000 0.00 0.00 0.00 5.73
2284 2834 0.767060 GGACCCTGATAATCCCCCGT 60.767 60.000 0.00 0.00 0.00 5.28
2295 2845 3.797353 CCCCCGTCCATCCACCAG 61.797 72.222 0.00 0.00 0.00 4.00
2304 2859 3.790437 ATCCACCAGCCAGCTCGG 61.790 66.667 6.59 6.59 38.11 4.63
2347 2907 2.747460 CACGACCACCCCATGCAG 60.747 66.667 0.00 0.00 0.00 4.41
2371 2932 3.213506 TCCCTTGTTCAAGTGTGATGTG 58.786 45.455 10.93 0.00 32.48 3.21
2386 2947 5.410746 GTGTGATGTGATGTCAGAATTCAGT 59.589 40.000 8.44 0.00 0.00 3.41
2417 2979 6.642683 ACTAATTTCGACGTGGTTAATCAG 57.357 37.500 0.00 0.00 0.00 2.90
2478 3040 4.623932 TTTCAAGCAGACCTGTACAGAT 57.376 40.909 24.68 7.04 0.00 2.90
2499 3061 9.558396 ACAGATATTTTCTCTGGATTGATCTTC 57.442 33.333 5.41 0.00 43.58 2.87
2509 3071 9.442047 TCTCTGGATTGATCTTCTAAAAAGAAC 57.558 33.333 0.00 0.00 0.00 3.01
2510 3072 9.224267 CTCTGGATTGATCTTCTAAAAAGAACA 57.776 33.333 0.00 0.00 0.00 3.18
2511 3073 9.745018 TCTGGATTGATCTTCTAAAAAGAACAT 57.255 29.630 0.00 0.00 30.81 2.71
2533 3095 9.671279 AACATTTTCTCTGAATTTCCTTTTTGT 57.329 25.926 0.00 0.00 0.00 2.83
2536 3098 8.871686 TTTTCTCTGAATTTCCTTTTTGTAGC 57.128 30.769 0.00 0.00 0.00 3.58
2537 3099 7.823745 TTCTCTGAATTTCCTTTTTGTAGCT 57.176 32.000 0.00 0.00 0.00 3.32
2538 3100 7.206981 TCTCTGAATTTCCTTTTTGTAGCTG 57.793 36.000 0.00 0.00 0.00 4.24
2539 3101 6.207417 TCTCTGAATTTCCTTTTTGTAGCTGG 59.793 38.462 0.00 0.00 0.00 4.85
2579 3141 6.039717 TCTGTTGATGACACGATGATCAGATA 59.960 38.462 0.09 0.00 33.82 1.98
2615 3177 5.787953 TGTTTCTGCATCCAAGATGAAAA 57.212 34.783 8.74 3.25 0.00 2.29
2675 3239 4.600692 TTGCACAGTAGAAGTAGAAGCA 57.399 40.909 0.00 0.00 0.00 3.91
2956 3594 2.906458 CCTGAGCTGGCACCTAGG 59.094 66.667 7.41 7.41 0.00 3.02
2957 3595 2.739996 CCTGAGCTGGCACCTAGGG 61.740 68.421 14.81 3.13 0.00 3.53
2958 3596 3.397613 CTGAGCTGGCACCTAGGGC 62.398 68.421 14.81 13.42 0.00 5.19
2965 3603 4.002797 GCACCTAGGGCCTGTTTG 57.997 61.111 18.53 10.95 0.00 2.93
2966 3604 1.678970 GCACCTAGGGCCTGTTTGG 60.679 63.158 18.53 15.00 39.35 3.28
2967 3605 2.074967 CACCTAGGGCCTGTTTGGA 58.925 57.895 18.53 0.00 38.35 3.53
2968 3606 0.625849 CACCTAGGGCCTGTTTGGAT 59.374 55.000 18.53 1.81 38.35 3.41
2969 3607 0.625849 ACCTAGGGCCTGTTTGGATG 59.374 55.000 18.53 0.00 38.35 3.51
2970 3608 0.106519 CCTAGGGCCTGTTTGGATGG 60.107 60.000 18.53 1.51 38.35 3.51
2971 3609 0.753111 CTAGGGCCTGTTTGGATGGC 60.753 60.000 18.53 0.00 45.42 4.40
2972 3610 1.214305 TAGGGCCTGTTTGGATGGCT 61.214 55.000 18.53 0.00 45.45 4.75
2973 3611 2.353610 GGGCCTGTTTGGATGGCTG 61.354 63.158 0.84 0.00 45.45 4.85
2974 3612 2.575461 GCCTGTTTGGATGGCTGC 59.425 61.111 0.00 0.00 43.05 5.25
2975 3613 3.010413 GCCTGTTTGGATGGCTGCC 62.010 63.158 12.87 12.87 43.05 4.85
2976 3614 1.607178 CCTGTTTGGATGGCTGCCA 60.607 57.895 25.65 25.65 38.35 4.92
2977 3615 1.186917 CCTGTTTGGATGGCTGCCAA 61.187 55.000 27.24 6.43 43.31 4.52
2980 3618 4.116926 TTGGATGGCTGCCAAAGG 57.883 55.556 27.24 0.00 42.13 3.11
2997 3635 3.862877 AAGGCTGCCTTTCCAAAATTT 57.137 38.095 27.70 1.89 41.69 1.82
2998 3636 3.862877 AGGCTGCCTTTCCAAAATTTT 57.137 38.095 17.22 0.00 0.00 1.82
2999 3637 3.479489 AGGCTGCCTTTCCAAAATTTTG 58.521 40.909 21.65 21.65 37.90 2.44
3000 3638 5.228713 AAGGCTGCCTTTCCAAAATTTTGG 61.229 41.667 34.81 34.81 45.46 3.28
3001 3639 7.626989 AAGGCTGCCTTTCCAAAATTTTGGT 62.627 40.000 36.98 19.13 45.55 3.67
3025 3663 3.136123 CCACAAGATGGGCAGCCG 61.136 66.667 5.00 0.00 45.95 5.52
3026 3664 2.360350 CACAAGATGGGCAGCCGT 60.360 61.111 5.00 0.00 0.00 5.68
3027 3665 1.973281 CACAAGATGGGCAGCCGTT 60.973 57.895 5.00 0.00 0.00 4.44
3028 3666 1.228552 ACAAGATGGGCAGCCGTTT 60.229 52.632 5.00 0.00 0.00 3.60
3029 3667 1.213537 CAAGATGGGCAGCCGTTTG 59.786 57.895 5.00 3.51 0.00 2.93
3030 3668 1.978617 AAGATGGGCAGCCGTTTGG 60.979 57.895 5.00 0.00 38.77 3.28
3031 3669 2.361104 GATGGGCAGCCGTTTGGA 60.361 61.111 5.00 0.00 37.49 3.53
3032 3670 1.754234 GATGGGCAGCCGTTTGGAT 60.754 57.895 5.00 0.00 37.49 3.41
3033 3671 1.305213 ATGGGCAGCCGTTTGGATT 60.305 52.632 5.00 0.00 37.49 3.01
3034 3672 1.606885 ATGGGCAGCCGTTTGGATTG 61.607 55.000 5.00 0.00 37.49 2.67
3035 3673 2.125952 GGCAGCCGTTTGGATTGC 60.126 61.111 0.00 3.52 43.03 3.56
3036 3674 2.650196 GCAGCCGTTTGGATTGCA 59.350 55.556 6.42 0.00 43.17 4.08
3037 3675 1.444895 GCAGCCGTTTGGATTGCAG 60.445 57.895 6.42 0.00 43.17 4.41
3038 3676 1.444895 CAGCCGTTTGGATTGCAGC 60.445 57.895 0.00 0.00 37.49 5.25
3039 3677 2.125952 GCCGTTTGGATTGCAGCC 60.126 61.111 0.97 0.97 37.49 4.85
3040 3678 2.179018 CCGTTTGGATTGCAGCCG 59.821 61.111 3.59 0.00 37.49 5.52
3041 3679 2.331893 CCGTTTGGATTGCAGCCGA 61.332 57.895 3.59 0.00 37.49 5.54
3042 3680 1.578926 CGTTTGGATTGCAGCCGAA 59.421 52.632 6.32 6.32 0.00 4.30
3043 3681 0.171007 CGTTTGGATTGCAGCCGAAT 59.829 50.000 12.06 0.00 31.71 3.34
3044 3682 1.795162 CGTTTGGATTGCAGCCGAATC 60.795 52.381 12.06 0.83 31.71 2.52
3045 3683 1.474077 GTTTGGATTGCAGCCGAATCT 59.526 47.619 12.06 0.00 31.71 2.40
3046 3684 1.382522 TTGGATTGCAGCCGAATCTC 58.617 50.000 5.65 0.00 31.56 2.75
3047 3685 0.464373 TGGATTGCAGCCGAATCTCC 60.464 55.000 5.65 0.00 31.56 3.71
3048 3686 1.169034 GGATTGCAGCCGAATCTCCC 61.169 60.000 5.65 0.00 31.56 4.30
3049 3687 1.502163 GATTGCAGCCGAATCTCCCG 61.502 60.000 0.00 0.00 0.00 5.14
3050 3688 1.971505 ATTGCAGCCGAATCTCCCGA 61.972 55.000 0.00 0.00 0.00 5.14
3051 3689 2.178876 TTGCAGCCGAATCTCCCGAA 62.179 55.000 0.00 0.00 0.00 4.30
3052 3690 1.884926 GCAGCCGAATCTCCCGAAG 60.885 63.158 0.00 0.00 0.00 3.79
3065 3703 3.912899 CCGAAGGCTGCCAATTTTT 57.087 47.368 22.65 5.53 46.14 1.94
3079 3717 3.622514 TTTTTGGCCAGCCGTTGT 58.377 50.000 5.11 0.00 39.42 3.32
3080 3718 1.142748 TTTTTGGCCAGCCGTTGTG 59.857 52.632 5.11 0.00 39.42 3.33
3081 3719 1.323271 TTTTTGGCCAGCCGTTGTGA 61.323 50.000 5.11 0.00 39.42 3.58
3082 3720 1.112315 TTTTGGCCAGCCGTTGTGAT 61.112 50.000 5.11 0.00 39.42 3.06
3083 3721 1.112315 TTTGGCCAGCCGTTGTGATT 61.112 50.000 5.11 0.00 39.42 2.57
3084 3722 1.523154 TTGGCCAGCCGTTGTGATTC 61.523 55.000 5.11 0.00 39.42 2.52
3085 3723 1.675641 GGCCAGCCGTTGTGATTCT 60.676 57.895 0.00 0.00 0.00 2.40
3086 3724 1.503542 GCCAGCCGTTGTGATTCTG 59.496 57.895 0.00 0.00 0.00 3.02
3087 3725 1.237285 GCCAGCCGTTGTGATTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
3088 3726 1.943968 GCCAGCCGTTGTGATTCTGTA 60.944 52.381 0.00 0.00 0.00 2.74
3089 3727 1.732259 CCAGCCGTTGTGATTCTGTAC 59.268 52.381 0.00 0.00 0.00 2.90
3090 3728 2.612972 CCAGCCGTTGTGATTCTGTACT 60.613 50.000 0.00 0.00 0.00 2.73
3091 3729 3.368013 CCAGCCGTTGTGATTCTGTACTA 60.368 47.826 0.00 0.00 0.00 1.82
3092 3730 4.242475 CAGCCGTTGTGATTCTGTACTAA 58.758 43.478 0.00 0.00 0.00 2.24
3093 3731 4.870426 CAGCCGTTGTGATTCTGTACTAAT 59.130 41.667 0.00 0.00 0.00 1.73
3094 3732 6.040247 CAGCCGTTGTGATTCTGTACTAATA 58.960 40.000 0.00 0.00 0.00 0.98
3095 3733 6.019801 CAGCCGTTGTGATTCTGTACTAATAC 60.020 42.308 0.00 0.00 0.00 1.89
3096 3734 5.808540 GCCGTTGTGATTCTGTACTAATACA 59.191 40.000 0.00 0.00 39.06 2.29
3097 3735 6.479001 GCCGTTGTGATTCTGTACTAATACAT 59.521 38.462 0.00 0.00 40.57 2.29
3098 3736 7.516785 GCCGTTGTGATTCTGTACTAATACATG 60.517 40.741 0.00 0.00 40.57 3.21
3099 3737 7.042725 CCGTTGTGATTCTGTACTAATACATGG 60.043 40.741 0.00 0.00 40.57 3.66
3100 3738 7.042725 CGTTGTGATTCTGTACTAATACATGGG 60.043 40.741 0.00 0.00 40.57 4.00
3101 3739 6.288294 TGTGATTCTGTACTAATACATGGGC 58.712 40.000 0.00 0.00 40.57 5.36
3102 3740 5.405571 GTGATTCTGTACTAATACATGGGCG 59.594 44.000 0.00 0.00 40.57 6.13
3103 3741 5.303333 TGATTCTGTACTAATACATGGGCGA 59.697 40.000 0.00 0.00 40.57 5.54
3104 3742 4.848562 TCTGTACTAATACATGGGCGAG 57.151 45.455 0.00 0.00 40.57 5.03
3105 3743 4.212716 TCTGTACTAATACATGGGCGAGT 58.787 43.478 0.00 0.00 40.57 4.18
3106 3744 4.647853 TCTGTACTAATACATGGGCGAGTT 59.352 41.667 0.00 0.00 40.57 3.01
3107 3745 4.940463 TGTACTAATACATGGGCGAGTTC 58.060 43.478 0.00 0.00 36.34 3.01
3108 3746 4.647853 TGTACTAATACATGGGCGAGTTCT 59.352 41.667 0.00 0.00 36.34 3.01
3109 3747 4.323553 ACTAATACATGGGCGAGTTCTC 57.676 45.455 0.00 0.00 0.00 2.87
3110 3748 2.225068 AATACATGGGCGAGTTCTCG 57.775 50.000 16.47 16.47 0.00 4.04
3111 3749 0.389391 ATACATGGGCGAGTTCTCGG 59.611 55.000 20.97 8.61 0.00 4.63
3118 3756 4.554363 CGAGTTCTCGGCGGCGAT 62.554 66.667 34.71 20.25 0.00 4.58
3119 3757 2.202756 GAGTTCTCGGCGGCGATT 60.203 61.111 34.71 19.64 0.00 3.34
3120 3758 1.810030 GAGTTCTCGGCGGCGATTT 60.810 57.895 34.71 19.28 0.00 2.17
3121 3759 1.753468 GAGTTCTCGGCGGCGATTTC 61.753 60.000 34.71 24.28 0.00 2.17
3122 3760 2.510691 TTCTCGGCGGCGATTTCC 60.511 61.111 34.71 0.00 0.00 3.13
3123 3761 3.014085 TTCTCGGCGGCGATTTCCT 62.014 57.895 34.71 0.00 0.00 3.36
3124 3762 2.511600 CTCGGCGGCGATTTCCTT 60.512 61.111 34.71 0.00 0.00 3.36
3125 3763 2.510691 TCGGCGGCGATTTCCTTC 60.511 61.111 31.46 0.00 0.00 3.46
3126 3764 3.925238 CGGCGGCGATTTCCTTCG 61.925 66.667 29.19 0.00 41.99 3.79
3137 3775 4.945090 CGATTTCCTTCGCCAAAAATTTG 58.055 39.130 0.00 0.00 37.90 2.32
3148 3786 1.733360 CAAAAATTTGGCAGGCCATCG 59.267 47.619 14.71 0.00 46.64 3.84
3149 3787 0.975887 AAAATTTGGCAGGCCATCGT 59.024 45.000 14.71 0.26 46.64 3.73
3150 3788 0.975887 AAATTTGGCAGGCCATCGTT 59.024 45.000 14.71 6.67 46.64 3.85
3151 3789 0.975887 AATTTGGCAGGCCATCGTTT 59.024 45.000 14.71 3.08 46.64 3.60
3152 3790 0.975887 ATTTGGCAGGCCATCGTTTT 59.024 45.000 14.71 0.00 46.64 2.43
3153 3791 0.033228 TTTGGCAGGCCATCGTTTTG 59.967 50.000 14.71 0.00 46.64 2.44
3154 3792 1.814772 TTGGCAGGCCATCGTTTTGG 61.815 55.000 14.71 0.00 46.64 3.28
3160 3798 2.573340 CCATCGTTTTGGCAGGGC 59.427 61.111 0.00 0.00 0.00 5.19
3161 3799 1.978617 CCATCGTTTTGGCAGGGCT 60.979 57.895 0.00 0.00 0.00 5.19
3162 3800 1.213537 CATCGTTTTGGCAGGGCTG 59.786 57.895 0.00 0.00 0.00 4.85
3163 3801 1.978617 ATCGTTTTGGCAGGGCTGG 60.979 57.895 0.00 0.00 0.00 4.85
3164 3802 2.713531 ATCGTTTTGGCAGGGCTGGT 62.714 55.000 0.00 0.00 0.00 4.00
3165 3803 2.498056 CGTTTTGGCAGGGCTGGTT 61.498 57.895 0.00 0.00 0.00 3.67
3166 3804 1.829456 GTTTTGGCAGGGCTGGTTT 59.171 52.632 0.00 0.00 0.00 3.27
3167 3805 0.532640 GTTTTGGCAGGGCTGGTTTG 60.533 55.000 0.00 0.00 0.00 2.93
3168 3806 1.694133 TTTTGGCAGGGCTGGTTTGG 61.694 55.000 0.00 0.00 0.00 3.28
3169 3807 4.619320 TGGCAGGGCTGGTTTGGG 62.619 66.667 0.00 0.00 0.00 4.12
3170 3808 4.621087 GGCAGGGCTGGTTTGGGT 62.621 66.667 0.00 0.00 0.00 4.51
3171 3809 2.524148 GCAGGGCTGGTTTGGGTT 60.524 61.111 0.00 0.00 0.00 4.11
3172 3810 2.574018 GCAGGGCTGGTTTGGGTTC 61.574 63.158 0.00 0.00 0.00 3.62
3173 3811 1.152567 CAGGGCTGGTTTGGGTTCA 60.153 57.895 0.00 0.00 0.00 3.18
3174 3812 0.758685 CAGGGCTGGTTTGGGTTCAA 60.759 55.000 0.00 0.00 0.00 2.69
3175 3813 0.190815 AGGGCTGGTTTGGGTTCAAT 59.809 50.000 0.00 0.00 32.28 2.57
3176 3814 0.608130 GGGCTGGTTTGGGTTCAATC 59.392 55.000 0.00 0.00 32.28 2.67
3177 3815 0.608130 GGCTGGTTTGGGTTCAATCC 59.392 55.000 0.00 0.00 41.08 3.01
3178 3816 1.337118 GCTGGTTTGGGTTCAATCCA 58.663 50.000 8.17 8.17 45.42 3.41
3179 3817 1.691434 GCTGGTTTGGGTTCAATCCAA 59.309 47.619 0.00 0.00 46.26 3.53
3180 3818 2.103941 GCTGGTTTGGGTTCAATCCAAA 59.896 45.455 11.10 11.10 46.26 3.28
3184 3822 3.467374 TTTGGGTTCAATCCAAACAGC 57.533 42.857 11.10 0.00 45.92 4.40
3185 3823 1.337118 TGGGTTCAATCCAAACAGCC 58.663 50.000 0.00 0.00 0.00 4.85
3186 3824 0.608130 GGGTTCAATCCAAACAGCCC 59.392 55.000 0.00 0.00 0.00 5.19
3187 3825 0.608130 GGTTCAATCCAAACAGCCCC 59.392 55.000 0.00 0.00 0.00 5.80
3188 3826 0.608130 GTTCAATCCAAACAGCCCCC 59.392 55.000 0.00 0.00 0.00 5.40
3189 3827 0.486879 TTCAATCCAAACAGCCCCCT 59.513 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
486 496 2.932234 CGCCTCCGTCTGGTGTTCT 61.932 63.158 0.00 0.00 36.30 3.01
509 519 3.432051 CTCTCCTACCCCTTGCGCG 62.432 68.421 0.00 0.00 0.00 6.86
551 572 2.263540 GGCTACGTCAAGGGCGAA 59.736 61.111 0.00 0.00 0.00 4.70
692 756 1.460497 GGATCCACCTCTCCTCCCC 60.460 68.421 6.95 0.00 35.41 4.81
693 757 0.762461 CTGGATCCACCTCTCCTCCC 60.762 65.000 11.44 0.00 39.86 4.30
696 760 1.760086 CGCTGGATCCACCTCTCCT 60.760 63.158 11.44 0.00 39.86 3.69
715 1128 4.658786 ACCGCTTCCCTCCCACCT 62.659 66.667 0.00 0.00 0.00 4.00
835 1250 2.726351 GGGGACGGGAGAGAGCAAG 61.726 68.421 0.00 0.00 0.00 4.01
837 1252 4.779733 GGGGGACGGGAGAGAGCA 62.780 72.222 0.00 0.00 0.00 4.26
849 1266 0.105142 GTAGGAGCCTATGTGGGGGA 60.105 60.000 0.00 0.00 36.00 4.81
850 1267 1.128188 GGTAGGAGCCTATGTGGGGG 61.128 65.000 0.00 0.00 36.00 5.40
851 1268 1.128188 GGGTAGGAGCCTATGTGGGG 61.128 65.000 0.00 0.00 36.00 4.96
855 1272 1.971357 CGAATGGGTAGGAGCCTATGT 59.029 52.381 0.00 0.00 36.53 2.29
859 1276 2.444256 GCCGAATGGGTAGGAGCCT 61.444 63.158 0.00 0.00 36.53 4.58
943 1369 1.404843 GCTCCGGTCTGATCCTTACT 58.595 55.000 0.00 0.00 0.00 2.24
964 1390 1.043673 GGCTTCTTCTCCTCCGGCTA 61.044 60.000 0.00 0.00 0.00 3.93
972 1398 1.021920 GGTCGCTTGGCTTCTTCTCC 61.022 60.000 0.00 0.00 0.00 3.71
1399 1831 2.831685 TTTTCTACAGAAGAGCGGCA 57.168 45.000 1.45 0.00 35.05 5.69
1460 1894 3.296709 AACCAGAATCGCTCGCCGT 62.297 57.895 0.00 0.00 38.35 5.68
1467 1901 2.086054 ACTGTCTGAACCAGAATCGC 57.914 50.000 2.66 0.00 42.46 4.58
1468 1902 3.919216 AGAACTGTCTGAACCAGAATCG 58.081 45.455 2.66 0.00 42.46 3.34
1469 1903 4.083590 GCAAGAACTGTCTGAACCAGAATC 60.084 45.833 2.66 1.62 42.46 2.52
1470 1904 3.817647 GCAAGAACTGTCTGAACCAGAAT 59.182 43.478 2.66 0.00 42.46 2.40
1485 1919 1.916697 GCCGAAGCAGGAGCAAGAAC 61.917 60.000 0.00 0.00 45.49 3.01
1486 1920 1.672356 GCCGAAGCAGGAGCAAGAA 60.672 57.895 0.00 0.00 45.49 2.52
1487 1921 2.046892 GCCGAAGCAGGAGCAAGA 60.047 61.111 0.00 0.00 45.49 3.02
1488 1922 2.046507 AGCCGAAGCAGGAGCAAG 60.047 61.111 0.00 0.00 45.49 4.01
1489 1923 2.359107 CAGCCGAAGCAGGAGCAA 60.359 61.111 0.00 0.00 45.49 3.91
1490 1924 2.189191 ATTCAGCCGAAGCAGGAGCA 62.189 55.000 0.00 0.00 45.49 4.26
1491 1925 0.179073 TATTCAGCCGAAGCAGGAGC 60.179 55.000 0.00 0.00 43.56 4.70
1492 1926 2.315925 TTATTCAGCCGAAGCAGGAG 57.684 50.000 0.00 0.00 43.56 3.69
1493 1927 2.564771 CATTATTCAGCCGAAGCAGGA 58.435 47.619 0.00 0.00 43.56 3.86
1494 1928 1.002033 GCATTATTCAGCCGAAGCAGG 60.002 52.381 0.00 0.00 43.56 4.85
1495 1929 1.333524 CGCATTATTCAGCCGAAGCAG 60.334 52.381 0.00 0.00 43.56 4.24
1496 1930 0.657312 CGCATTATTCAGCCGAAGCA 59.343 50.000 0.00 0.00 43.56 3.91
1497 1931 0.937304 TCGCATTATTCAGCCGAAGC 59.063 50.000 0.00 0.00 33.74 3.86
1498 1932 1.071239 CGTCGCATTATTCAGCCGAAG 60.071 52.381 0.00 0.00 33.74 3.79
1499 1933 0.927537 CGTCGCATTATTCAGCCGAA 59.072 50.000 0.00 0.00 35.05 4.30
1500 1934 0.101579 TCGTCGCATTATTCAGCCGA 59.898 50.000 0.00 0.00 0.00 5.54
1501 1935 1.136529 CATCGTCGCATTATTCAGCCG 60.137 52.381 0.00 0.00 0.00 5.52
1502 1936 1.398960 GCATCGTCGCATTATTCAGCC 60.399 52.381 0.00 0.00 0.00 4.85
1503 1937 1.398960 GGCATCGTCGCATTATTCAGC 60.399 52.381 1.52 0.00 0.00 4.26
1504 1938 1.866601 TGGCATCGTCGCATTATTCAG 59.133 47.619 1.52 0.00 0.00 3.02
1505 1939 1.866601 CTGGCATCGTCGCATTATTCA 59.133 47.619 0.00 0.00 0.00 2.57
1506 1940 1.867233 ACTGGCATCGTCGCATTATTC 59.133 47.619 0.00 0.00 0.00 1.75
1507 1941 1.599071 CACTGGCATCGTCGCATTATT 59.401 47.619 0.00 0.00 0.00 1.40
1508 1942 1.220529 CACTGGCATCGTCGCATTAT 58.779 50.000 0.00 0.00 0.00 1.28
1509 1943 0.108377 ACACTGGCATCGTCGCATTA 60.108 50.000 0.00 0.00 0.00 1.90
1510 1944 1.375908 ACACTGGCATCGTCGCATT 60.376 52.632 0.00 0.00 0.00 3.56
1511 1945 2.102438 CACACTGGCATCGTCGCAT 61.102 57.895 0.00 0.00 0.00 4.73
1512 1946 2.738139 CACACTGGCATCGTCGCA 60.738 61.111 0.00 0.00 0.00 5.10
1513 1947 2.227968 GAACACACTGGCATCGTCGC 62.228 60.000 0.00 0.00 0.00 5.19
1514 1948 0.667487 AGAACACACTGGCATCGTCG 60.667 55.000 0.00 0.00 0.00 5.12
1515 1949 1.195448 CAAGAACACACTGGCATCGTC 59.805 52.381 0.00 0.00 0.00 4.20
1516 1950 1.229428 CAAGAACACACTGGCATCGT 58.771 50.000 0.00 0.00 0.00 3.73
1517 1951 0.110056 GCAAGAACACACTGGCATCG 60.110 55.000 0.00 0.00 36.87 3.84
1518 1952 0.953727 TGCAAGAACACACTGGCATC 59.046 50.000 0.00 0.00 41.23 3.91
1519 1953 0.956633 CTGCAAGAACACACTGGCAT 59.043 50.000 0.00 0.00 44.41 4.40
1520 1954 1.727511 GCTGCAAGAACACACTGGCA 61.728 55.000 0.00 0.00 43.47 4.92
1521 1955 1.008079 GCTGCAAGAACACACTGGC 60.008 57.895 0.00 0.00 37.35 4.85
1522 1956 1.027357 AAGCTGCAAGAACACACTGG 58.973 50.000 1.02 0.00 34.07 4.00
1523 1957 2.874701 ACTAAGCTGCAAGAACACACTG 59.125 45.455 1.02 0.00 34.07 3.66
1524 1958 3.199880 ACTAAGCTGCAAGAACACACT 57.800 42.857 1.02 0.00 34.07 3.55
1525 1959 3.971032 AACTAAGCTGCAAGAACACAC 57.029 42.857 1.02 0.00 34.07 3.82
1541 1975 5.560722 TGCTTGCTATATTGGGCTAACTA 57.439 39.130 0.00 0.00 0.00 2.24
1557 1991 1.800586 TCTGACAAGTCGATTGCTTGC 59.199 47.619 12.70 7.58 45.09 4.01
1558 1992 4.400845 CAATCTGACAAGTCGATTGCTTG 58.599 43.478 22.13 11.53 46.23 4.01
1559 1993 4.675190 CAATCTGACAAGTCGATTGCTT 57.325 40.909 22.13 0.00 43.15 3.91
1586 2020 9.241317 GGATAATAAAAATGATGAACTGCACTG 57.759 33.333 0.00 0.00 0.00 3.66
1636 2070 2.672961 TCGGTACAGGATTTGCAGAG 57.327 50.000 0.00 0.00 0.00 3.35
1649 2083 2.215196 TGTCAGCTTGGTTTTCGGTAC 58.785 47.619 0.00 0.00 0.00 3.34
1685 2119 5.644206 GGCCTTTCCTTCTGACTAAAAGTAG 59.356 44.000 0.00 0.00 0.00 2.57
1686 2120 5.514310 GGGCCTTTCCTTCTGACTAAAAGTA 60.514 44.000 0.84 0.00 34.39 2.24
1687 2121 4.399219 GGCCTTTCCTTCTGACTAAAAGT 58.601 43.478 0.00 0.00 0.00 2.66
1688 2122 3.759086 GGGCCTTTCCTTCTGACTAAAAG 59.241 47.826 0.84 0.00 34.39 2.27
1694 2128 0.962855 GCAGGGCCTTTCCTTCTGAC 60.963 60.000 1.32 0.00 34.31 3.51
1708 2142 2.449137 ATGATCTGAAAAGGGCAGGG 57.551 50.000 0.00 0.00 34.20 4.45
1709 2143 4.530875 AGTTATGATCTGAAAAGGGCAGG 58.469 43.478 0.00 0.00 34.20 4.85
1710 2144 6.259608 CAGTAGTTATGATCTGAAAAGGGCAG 59.740 42.308 0.00 0.00 34.71 4.85
1728 2162 6.595716 GGTGCTAAATCATGAAGTCAGTAGTT 59.404 38.462 0.00 0.00 0.00 2.24
1743 2177 1.682087 GGTGGTCAGGGGTGCTAAATC 60.682 57.143 0.00 0.00 0.00 2.17
1767 2203 2.492012 GATGCAGCTCGATCTTGGAAT 58.508 47.619 0.00 0.00 0.00 3.01
1809 2245 1.269517 GCCGCAAGAACACATTGGAAA 60.270 47.619 0.00 0.00 43.02 3.13
1815 2251 2.185004 ACTAAGCCGCAAGAACACAT 57.815 45.000 0.00 0.00 43.02 3.21
1866 2415 4.887071 ACAACCAACTGTTAAGCAATCTGA 59.113 37.500 0.00 0.00 34.69 3.27
1872 2421 5.392767 TGAAAACAACCAACTGTTAAGCA 57.607 34.783 0.00 0.00 38.59 3.91
1876 2425 7.332182 GGTGAAAATGAAAACAACCAACTGTTA 59.668 33.333 0.00 0.00 38.59 2.41
1890 2439 5.609423 CCACAATCCTTGGTGAAAATGAAA 58.391 37.500 0.00 0.00 37.18 2.69
1895 2444 2.627699 GAGCCACAATCCTTGGTGAAAA 59.372 45.455 0.00 0.00 37.18 2.29
1900 2449 0.610232 GCAGAGCCACAATCCTTGGT 60.610 55.000 0.00 0.00 36.40 3.67
1969 2518 9.303116 GAAAGGGTAGAATGACATCTCTATCTA 57.697 37.037 13.18 4.62 0.00 1.98
1973 2522 6.202331 TGGAAAGGGTAGAATGACATCTCTA 58.798 40.000 0.00 0.00 0.00 2.43
2021 2570 9.579932 TCTTATAGAATTCAGCTAGTCAGATGA 57.420 33.333 8.44 0.00 45.23 2.92
2024 2573 8.726068 CGATCTTATAGAATTCAGCTAGTCAGA 58.274 37.037 8.44 0.00 0.00 3.27
2031 2580 9.685828 GTAGTTTCGATCTTATAGAATTCAGCT 57.314 33.333 8.44 0.00 0.00 4.24
2032 2581 9.464714 TGTAGTTTCGATCTTATAGAATTCAGC 57.535 33.333 8.44 0.00 0.00 4.26
2038 2587 9.350951 TGAGGATGTAGTTTCGATCTTATAGAA 57.649 33.333 0.00 0.00 0.00 2.10
2043 2592 6.738731 GCCATGAGGATGTAGTTTCGATCTTA 60.739 42.308 0.00 0.00 36.89 2.10
2044 2593 5.605534 CCATGAGGATGTAGTTTCGATCTT 58.394 41.667 0.00 0.00 36.89 2.40
2048 2597 2.499693 TGCCATGAGGATGTAGTTTCGA 59.500 45.455 0.00 0.00 36.89 3.71
2050 2599 3.878778 AGTGCCATGAGGATGTAGTTTC 58.121 45.455 0.00 0.00 36.89 2.78
2061 2610 2.158856 TCATGCCTTCTAGTGCCATGAG 60.159 50.000 0.00 0.00 0.00 2.90
2066 2615 2.680339 GAGTTTCATGCCTTCTAGTGCC 59.320 50.000 0.00 0.00 0.00 5.01
2067 2616 3.604582 AGAGTTTCATGCCTTCTAGTGC 58.395 45.455 0.00 0.00 0.00 4.40
2076 2625 3.730061 CGATCAGCAAAGAGTTTCATGCC 60.730 47.826 0.00 0.00 39.59 4.40
2099 2648 4.037208 GTGTCCTGGCAATAATGATTCAGG 59.963 45.833 4.68 4.68 39.75 3.86
2117 2667 6.349363 GGGTTCAGTGAAAATAATCAGTGTCC 60.349 42.308 7.25 12.90 46.33 4.02
2131 2681 7.333423 CGATTCAAAATAGTAGGGTTCAGTGAA 59.667 37.037 0.08 0.08 0.00 3.18
2149 2699 6.695713 CAGGTATCTGATTACGTCGATTCAAA 59.304 38.462 0.00 0.00 43.49 2.69
2152 2702 5.998553 TCAGGTATCTGATTACGTCGATTC 58.001 41.667 0.14 0.00 44.39 2.52
2186 2736 0.193574 TGTCCTTCTCCAGGTTCCCT 59.806 55.000 0.00 0.00 44.37 4.20
2238 2788 1.855360 GATGGCGTTCTCGATGTCTTC 59.145 52.381 0.00 0.00 39.71 2.87
2279 2829 4.489771 GCTGGTGGATGGACGGGG 62.490 72.222 0.00 0.00 0.00 5.73
2280 2830 4.489771 GGCTGGTGGATGGACGGG 62.490 72.222 0.00 0.00 0.00 5.28
2281 2831 3.687321 CTGGCTGGTGGATGGACGG 62.687 68.421 0.00 0.00 0.00 4.79
2283 2833 2.439156 GCTGGCTGGTGGATGGAC 60.439 66.667 0.00 0.00 0.00 4.02
2284 2834 2.611800 AGCTGGCTGGTGGATGGA 60.612 61.111 0.00 0.00 0.00 3.41
2295 2845 3.119096 GGTTTCGACCGAGCTGGC 61.119 66.667 0.00 0.00 43.94 4.85
2304 2859 1.295746 GGAGGGTCCTGGTTTCGAC 59.704 63.158 0.00 0.00 32.53 4.20
2347 2907 3.140325 TCACACTTGAACAAGGGATCC 57.860 47.619 21.29 1.92 44.41 3.36
2386 2947 6.855836 ACCACGTCGAAATTAGTATACAGAA 58.144 36.000 5.50 0.00 0.00 3.02
2403 2965 2.412847 GCTTGTGCTGATTAACCACGTC 60.413 50.000 0.00 0.00 36.03 4.34
2417 2979 2.799412 CTGAATCCTATCTCGCTTGTGC 59.201 50.000 0.00 0.00 0.00 4.57
2510 3072 9.481340 GCTACAAAAAGGAAATTCAGAGAAAAT 57.519 29.630 0.00 0.00 0.00 1.82
2511 3073 8.695456 AGCTACAAAAAGGAAATTCAGAGAAAA 58.305 29.630 0.00 0.00 0.00 2.29
2512 3074 8.137437 CAGCTACAAAAAGGAAATTCAGAGAAA 58.863 33.333 0.00 0.00 0.00 2.52
2513 3075 7.255590 CCAGCTACAAAAAGGAAATTCAGAGAA 60.256 37.037 0.00 0.00 0.00 2.87
2514 3076 6.207417 CCAGCTACAAAAAGGAAATTCAGAGA 59.793 38.462 0.00 0.00 0.00 3.10
2515 3077 6.207417 TCCAGCTACAAAAAGGAAATTCAGAG 59.793 38.462 0.00 0.00 0.00 3.35
2516 3078 6.068010 TCCAGCTACAAAAAGGAAATTCAGA 58.932 36.000 0.00 0.00 0.00 3.27
2517 3079 6.331369 TCCAGCTACAAAAAGGAAATTCAG 57.669 37.500 0.00 0.00 0.00 3.02
2518 3080 6.916360 ATCCAGCTACAAAAAGGAAATTCA 57.084 33.333 0.00 0.00 31.17 2.57
2519 3081 8.607441 AAAATCCAGCTACAAAAAGGAAATTC 57.393 30.769 0.00 0.00 31.17 2.17
2520 3082 8.432013 AGAAAATCCAGCTACAAAAAGGAAATT 58.568 29.630 0.00 0.00 31.17 1.82
2521 3083 7.966812 AGAAAATCCAGCTACAAAAAGGAAAT 58.033 30.769 0.00 0.00 31.17 2.17
2522 3084 7.287696 AGAGAAAATCCAGCTACAAAAAGGAAA 59.712 33.333 0.00 0.00 31.17 3.13
2523 3085 6.777580 AGAGAAAATCCAGCTACAAAAAGGAA 59.222 34.615 0.00 0.00 31.17 3.36
2524 3086 6.207417 CAGAGAAAATCCAGCTACAAAAAGGA 59.793 38.462 0.00 0.00 0.00 3.36
2525 3087 6.385033 CAGAGAAAATCCAGCTACAAAAAGG 58.615 40.000 0.00 0.00 0.00 3.11
2526 3088 6.207417 TCCAGAGAAAATCCAGCTACAAAAAG 59.793 38.462 0.00 0.00 0.00 2.27
2527 3089 6.068010 TCCAGAGAAAATCCAGCTACAAAAA 58.932 36.000 0.00 0.00 0.00 1.94
2528 3090 5.630121 TCCAGAGAAAATCCAGCTACAAAA 58.370 37.500 0.00 0.00 0.00 2.44
2529 3091 5.241403 TCCAGAGAAAATCCAGCTACAAA 57.759 39.130 0.00 0.00 0.00 2.83
2530 3092 4.908601 TCCAGAGAAAATCCAGCTACAA 57.091 40.909 0.00 0.00 0.00 2.41
2531 3093 5.441718 AATCCAGAGAAAATCCAGCTACA 57.558 39.130 0.00 0.00 0.00 2.74
2532 3094 6.038050 CAGAAATCCAGAGAAAATCCAGCTAC 59.962 42.308 0.00 0.00 0.00 3.58
2533 3095 6.118170 CAGAAATCCAGAGAAAATCCAGCTA 58.882 40.000 0.00 0.00 0.00 3.32
2534 3096 4.948621 CAGAAATCCAGAGAAAATCCAGCT 59.051 41.667 0.00 0.00 0.00 4.24
2535 3097 4.704057 ACAGAAATCCAGAGAAAATCCAGC 59.296 41.667 0.00 0.00 0.00 4.85
2536 3098 6.432162 TCAACAGAAATCCAGAGAAAATCCAG 59.568 38.462 0.00 0.00 0.00 3.86
2537 3099 6.306199 TCAACAGAAATCCAGAGAAAATCCA 58.694 36.000 0.00 0.00 0.00 3.41
2538 3100 6.824305 TCAACAGAAATCCAGAGAAAATCC 57.176 37.500 0.00 0.00 0.00 3.01
2539 3101 7.967303 GTCATCAACAGAAATCCAGAGAAAATC 59.033 37.037 0.00 0.00 0.00 2.17
2579 3141 4.060205 GCAGAAACAAACTGGCATCAAAT 58.940 39.130 0.00 0.00 36.09 2.32
2615 3177 2.232941 CAGGTGAATCTTGCAAAGCCAT 59.767 45.455 0.00 0.00 45.70 4.40
2675 3239 5.594725 TCAGACTCAAAGTAGACTGACACTT 59.405 40.000 2.64 0.00 41.30 3.16
2954 3592 2.037847 GCCATCCAAACAGGCCCT 59.962 61.111 0.00 0.00 42.58 5.19
2958 3596 1.186917 TTGGCAGCCATCCAAACAGG 61.187 55.000 17.09 0.00 40.35 4.00
2959 3597 0.680618 TTTGGCAGCCATCCAAACAG 59.319 50.000 17.09 0.00 45.60 3.16
2960 3598 0.680618 CTTTGGCAGCCATCCAAACA 59.319 50.000 17.09 0.00 45.60 2.83
2961 3599 0.037046 CCTTTGGCAGCCATCCAAAC 60.037 55.000 17.09 0.00 45.60 2.93
2963 3601 4.116926 CCTTTGGCAGCCATCCAA 57.883 55.556 17.09 5.84 41.47 3.53
2977 3615 3.884693 CAAAATTTTGGAAAGGCAGCCTT 59.115 39.130 22.09 22.09 38.79 4.35
2978 3616 3.479489 CAAAATTTTGGAAAGGCAGCCT 58.521 40.909 21.00 8.70 34.59 4.58
2979 3617 3.902261 CAAAATTTTGGAAAGGCAGCC 57.098 42.857 21.00 1.84 34.59 4.85
3009 3647 1.526575 AAACGGCTGCCCATCTTGTG 61.527 55.000 14.12 0.00 0.00 3.33
3010 3648 1.228552 AAACGGCTGCCCATCTTGT 60.229 52.632 14.12 0.34 0.00 3.16
3011 3649 1.213537 CAAACGGCTGCCCATCTTG 59.786 57.895 14.12 7.61 0.00 3.02
3012 3650 1.978617 CCAAACGGCTGCCCATCTT 60.979 57.895 14.12 0.00 0.00 2.40
3013 3651 2.215451 ATCCAAACGGCTGCCCATCT 62.215 55.000 14.12 0.00 0.00 2.90
3014 3652 1.322538 AATCCAAACGGCTGCCCATC 61.323 55.000 14.12 0.00 0.00 3.51
3015 3653 1.305213 AATCCAAACGGCTGCCCAT 60.305 52.632 14.12 0.00 0.00 4.00
3016 3654 2.117206 AATCCAAACGGCTGCCCA 59.883 55.556 14.12 0.00 0.00 5.36
3017 3655 2.573340 CAATCCAAACGGCTGCCC 59.427 61.111 14.12 0.00 0.00 5.36
3018 3656 2.125952 GCAATCCAAACGGCTGCC 60.126 61.111 9.11 9.11 0.00 4.85
3019 3657 1.444895 CTGCAATCCAAACGGCTGC 60.445 57.895 0.00 0.00 34.41 5.25
3020 3658 1.444895 GCTGCAATCCAAACGGCTG 60.445 57.895 0.00 0.00 32.83 4.85
3021 3659 2.639327 GGCTGCAATCCAAACGGCT 61.639 57.895 0.50 0.00 35.96 5.52
3022 3660 2.125952 GGCTGCAATCCAAACGGC 60.126 61.111 0.50 0.00 34.88 5.68
3023 3661 1.861542 TTCGGCTGCAATCCAAACGG 61.862 55.000 0.50 0.00 0.00 4.44
3024 3662 0.171007 ATTCGGCTGCAATCCAAACG 59.829 50.000 0.50 0.00 0.00 3.60
3025 3663 1.474077 AGATTCGGCTGCAATCCAAAC 59.526 47.619 0.50 0.00 31.52 2.93
3026 3664 1.745087 GAGATTCGGCTGCAATCCAAA 59.255 47.619 0.50 0.00 31.52 3.28
3027 3665 1.382522 GAGATTCGGCTGCAATCCAA 58.617 50.000 0.50 0.45 31.52 3.53
3028 3666 0.464373 GGAGATTCGGCTGCAATCCA 60.464 55.000 0.50 0.00 31.52 3.41
3029 3667 1.169034 GGGAGATTCGGCTGCAATCC 61.169 60.000 0.50 5.95 31.52 3.01
3030 3668 1.502163 CGGGAGATTCGGCTGCAATC 61.502 60.000 0.50 3.22 0.00 2.67
3031 3669 1.524621 CGGGAGATTCGGCTGCAAT 60.525 57.895 0.50 0.00 0.00 3.56
3032 3670 2.125147 CGGGAGATTCGGCTGCAA 60.125 61.111 0.50 0.00 0.00 4.08
3033 3671 2.578163 CTTCGGGAGATTCGGCTGCA 62.578 60.000 0.50 0.00 39.57 4.41
3034 3672 1.884926 CTTCGGGAGATTCGGCTGC 60.885 63.158 0.00 0.00 39.57 5.25
3035 3673 1.227380 CCTTCGGGAGATTCGGCTG 60.227 63.158 0.00 0.00 39.57 4.85
3036 3674 3.095347 GCCTTCGGGAGATTCGGCT 62.095 63.158 0.00 0.00 41.17 5.52
3037 3675 2.589159 GCCTTCGGGAGATTCGGC 60.589 66.667 0.00 0.00 38.97 5.54
3038 3676 1.227380 CAGCCTTCGGGAGATTCGG 60.227 63.158 0.00 0.00 39.57 4.30
3039 3677 1.884926 GCAGCCTTCGGGAGATTCG 60.885 63.158 0.00 0.00 39.57 3.34
3040 3678 1.524849 GGCAGCCTTCGGGAGATTC 60.525 63.158 3.29 0.00 39.57 2.52
3041 3679 1.852157 TTGGCAGCCTTCGGGAGATT 61.852 55.000 14.15 0.00 39.57 2.40
3042 3680 1.639635 ATTGGCAGCCTTCGGGAGAT 61.640 55.000 14.15 0.00 39.57 2.75
3043 3681 1.852157 AATTGGCAGCCTTCGGGAGA 61.852 55.000 14.15 0.00 37.25 3.71
3044 3682 0.967380 AAATTGGCAGCCTTCGGGAG 60.967 55.000 14.15 0.00 37.25 4.30
3045 3683 0.541764 AAAATTGGCAGCCTTCGGGA 60.542 50.000 14.15 0.00 37.25 5.14
3046 3684 0.321346 AAAAATTGGCAGCCTTCGGG 59.679 50.000 14.15 0.00 38.37 5.14
3047 3685 3.912899 AAAAATTGGCAGCCTTCGG 57.087 47.368 14.15 0.00 0.00 4.30
3062 3700 1.142748 CACAACGGCTGGCCAAAAA 59.857 52.632 7.01 0.00 35.37 1.94
3063 3701 1.112315 ATCACAACGGCTGGCCAAAA 61.112 50.000 7.01 0.00 35.37 2.44
3064 3702 1.112315 AATCACAACGGCTGGCCAAA 61.112 50.000 7.01 0.00 35.37 3.28
3065 3703 1.523154 GAATCACAACGGCTGGCCAA 61.523 55.000 7.01 0.00 35.37 4.52
3066 3704 1.971167 GAATCACAACGGCTGGCCA 60.971 57.895 4.71 4.71 35.37 5.36
3067 3705 1.675641 AGAATCACAACGGCTGGCC 60.676 57.895 0.00 0.00 0.00 5.36
3068 3706 1.237285 ACAGAATCACAACGGCTGGC 61.237 55.000 0.00 0.00 0.00 4.85
3069 3707 1.732259 GTACAGAATCACAACGGCTGG 59.268 52.381 0.00 0.00 0.00 4.85
3070 3708 2.688507 AGTACAGAATCACAACGGCTG 58.311 47.619 0.00 0.00 0.00 4.85
3071 3709 4.530710 TTAGTACAGAATCACAACGGCT 57.469 40.909 0.00 0.00 0.00 5.52
3072 3710 5.808540 TGTATTAGTACAGAATCACAACGGC 59.191 40.000 0.00 0.00 35.94 5.68
3073 3711 7.042725 CCATGTATTAGTACAGAATCACAACGG 60.043 40.741 4.32 3.08 43.62 4.44
3074 3712 7.042725 CCCATGTATTAGTACAGAATCACAACG 60.043 40.741 4.32 0.00 43.62 4.10
3075 3713 7.254795 GCCCATGTATTAGTACAGAATCACAAC 60.255 40.741 4.32 0.00 43.62 3.32
3076 3714 6.765989 GCCCATGTATTAGTACAGAATCACAA 59.234 38.462 4.32 0.00 43.62 3.33
3077 3715 6.288294 GCCCATGTATTAGTACAGAATCACA 58.712 40.000 4.32 1.60 43.62 3.58
3078 3716 5.405571 CGCCCATGTATTAGTACAGAATCAC 59.594 44.000 4.32 0.00 43.62 3.06
3079 3717 5.303333 TCGCCCATGTATTAGTACAGAATCA 59.697 40.000 4.32 0.00 43.62 2.57
3080 3718 5.779922 TCGCCCATGTATTAGTACAGAATC 58.220 41.667 4.32 0.00 43.62 2.52
3081 3719 5.304614 ACTCGCCCATGTATTAGTACAGAAT 59.695 40.000 4.32 0.00 43.62 2.40
3082 3720 4.647853 ACTCGCCCATGTATTAGTACAGAA 59.352 41.667 4.32 0.00 43.62 3.02
3083 3721 4.212716 ACTCGCCCATGTATTAGTACAGA 58.787 43.478 4.32 0.00 43.62 3.41
3084 3722 4.585955 ACTCGCCCATGTATTAGTACAG 57.414 45.455 4.32 0.00 43.62 2.74
3085 3723 4.647853 AGAACTCGCCCATGTATTAGTACA 59.352 41.667 0.05 0.05 44.43 2.90
3086 3724 5.197682 AGAACTCGCCCATGTATTAGTAC 57.802 43.478 0.00 0.00 0.00 2.73
3087 3725 4.023450 CGAGAACTCGCCCATGTATTAGTA 60.023 45.833 11.13 0.00 46.50 1.82
3088 3726 3.243434 CGAGAACTCGCCCATGTATTAGT 60.243 47.826 11.13 0.00 46.50 2.24
3089 3727 3.309388 CGAGAACTCGCCCATGTATTAG 58.691 50.000 11.13 0.00 46.50 1.73
3090 3728 3.364889 CGAGAACTCGCCCATGTATTA 57.635 47.619 11.13 0.00 46.50 0.98
3091 3729 2.225068 CGAGAACTCGCCCATGTATT 57.775 50.000 11.13 0.00 46.50 1.89
3092 3730 3.967886 CGAGAACTCGCCCATGTAT 57.032 52.632 11.13 0.00 46.50 2.29
3109 3747 3.925238 CGAAGGAAATCGCCGCCG 61.925 66.667 0.00 0.00 35.85 6.46
3115 3753 4.945090 CAAATTTTTGGCGAAGGAAATCG 58.055 39.130 0.00 0.00 45.41 3.34
3137 3775 2.573340 CCAAAACGATGGCCTGCC 59.427 61.111 3.32 0.00 32.78 4.85
3143 3781 1.978617 AGCCCTGCCAAAACGATGG 60.979 57.895 0.00 0.00 43.70 3.51
3144 3782 1.213537 CAGCCCTGCCAAAACGATG 59.786 57.895 0.00 0.00 0.00 3.84
3145 3783 1.978617 CCAGCCCTGCCAAAACGAT 60.979 57.895 0.00 0.00 0.00 3.73
3146 3784 2.597217 CCAGCCCTGCCAAAACGA 60.597 61.111 0.00 0.00 0.00 3.85
3147 3785 2.026945 AAACCAGCCCTGCCAAAACG 62.027 55.000 0.00 0.00 0.00 3.60
3148 3786 0.532640 CAAACCAGCCCTGCCAAAAC 60.533 55.000 0.00 0.00 0.00 2.43
3149 3787 1.694133 CCAAACCAGCCCTGCCAAAA 61.694 55.000 0.00 0.00 0.00 2.44
3150 3788 2.139484 CCAAACCAGCCCTGCCAAA 61.139 57.895 0.00 0.00 0.00 3.28
3151 3789 2.523902 CCAAACCAGCCCTGCCAA 60.524 61.111 0.00 0.00 0.00 4.52
3152 3790 4.619320 CCCAAACCAGCCCTGCCA 62.619 66.667 0.00 0.00 0.00 4.92
3153 3791 4.621087 ACCCAAACCAGCCCTGCC 62.621 66.667 0.00 0.00 0.00 4.85
3154 3792 2.524148 AACCCAAACCAGCCCTGC 60.524 61.111 0.00 0.00 0.00 4.85
3155 3793 0.758685 TTGAACCCAAACCAGCCCTG 60.759 55.000 0.00 0.00 0.00 4.45
3156 3794 0.190815 ATTGAACCCAAACCAGCCCT 59.809 50.000 0.00 0.00 35.67 5.19
3157 3795 0.608130 GATTGAACCCAAACCAGCCC 59.392 55.000 0.00 0.00 35.67 5.19
3158 3796 0.608130 GGATTGAACCCAAACCAGCC 59.392 55.000 0.00 0.00 42.70 4.85
3159 3797 1.337118 TGGATTGAACCCAAACCAGC 58.663 50.000 3.50 0.00 46.21 4.85
3165 3803 1.691434 GGCTGTTTGGATTGAACCCAA 59.309 47.619 0.00 0.00 41.53 4.12
3166 3804 1.337118 GGCTGTTTGGATTGAACCCA 58.663 50.000 0.00 0.00 0.00 4.51
3167 3805 0.608130 GGGCTGTTTGGATTGAACCC 59.392 55.000 0.00 0.00 0.00 4.11
3168 3806 0.608130 GGGGCTGTTTGGATTGAACC 59.392 55.000 0.00 0.00 0.00 3.62
3169 3807 0.608130 GGGGGCTGTTTGGATTGAAC 59.392 55.000 0.00 0.00 0.00 3.18
3170 3808 0.486879 AGGGGGCTGTTTGGATTGAA 59.513 50.000 0.00 0.00 0.00 2.69
3171 3809 1.284785 CTAGGGGGCTGTTTGGATTGA 59.715 52.381 0.00 0.00 0.00 2.57
3172 3810 1.005924 ACTAGGGGGCTGTTTGGATTG 59.994 52.381 0.00 0.00 0.00 2.67
3173 3811 1.285078 GACTAGGGGGCTGTTTGGATT 59.715 52.381 0.00 0.00 0.00 3.01
3174 3812 0.919710 GACTAGGGGGCTGTTTGGAT 59.080 55.000 0.00 0.00 0.00 3.41
3175 3813 0.474854 TGACTAGGGGGCTGTTTGGA 60.475 55.000 0.00 0.00 0.00 3.53
3176 3814 0.322546 GTGACTAGGGGGCTGTTTGG 60.323 60.000 0.00 0.00 0.00 3.28
3177 3815 0.673644 CGTGACTAGGGGGCTGTTTG 60.674 60.000 0.00 0.00 0.00 2.93
3178 3816 1.677552 CGTGACTAGGGGGCTGTTT 59.322 57.895 0.00 0.00 0.00 2.83
3179 3817 2.291043 CCGTGACTAGGGGGCTGTT 61.291 63.158 0.00 0.00 0.00 3.16
3180 3818 2.683933 CCGTGACTAGGGGGCTGT 60.684 66.667 0.00 0.00 0.00 4.40
3181 3819 2.363795 TCCGTGACTAGGGGGCTG 60.364 66.667 0.00 0.00 32.66 4.85
3182 3820 2.363925 GTCCGTGACTAGGGGGCT 60.364 66.667 0.00 0.00 32.66 5.19
3183 3821 3.834799 CGTCCGTGACTAGGGGGC 61.835 72.222 0.00 0.00 32.66 5.80
3184 3822 3.834799 GCGTCCGTGACTAGGGGG 61.835 72.222 0.00 0.00 32.66 5.40
3185 3823 3.834799 GGCGTCCGTGACTAGGGG 61.835 72.222 0.00 0.00 32.66 4.79
3186 3824 2.754658 AGGCGTCCGTGACTAGGG 60.755 66.667 0.00 0.00 0.00 3.53
3187 3825 2.772691 GGAGGCGTCCGTGACTAGG 61.773 68.421 10.16 0.00 31.37 3.02
3188 3826 2.772691 GGGAGGCGTCCGTGACTAG 61.773 68.421 18.78 0.00 45.05 2.57
3189 3827 2.753043 GGGAGGCGTCCGTGACTA 60.753 66.667 18.78 0.00 45.05 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.