Multiple sequence alignment - TraesCS1A01G409200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G409200 chr1A 100.000 6785 0 0 1 6785 570865952 570859168 0.000000e+00 12530.0
1 TraesCS1A01G409200 chr1A 84.377 1421 180 21 3318 4721 570878988 570877593 0.000000e+00 1356.0
2 TraesCS1A01G409200 chr1A 84.182 1100 154 14 4625 5716 570877590 570876503 0.000000e+00 1050.0
3 TraesCS1A01G409200 chr1A 78.229 542 91 17 1 536 16306995 16306475 8.490000e-84 322.0
4 TraesCS1A01G409200 chr1A 100.000 29 0 0 6244 6272 583989207 583989235 3.000000e-03 54.7
5 TraesCS1A01G409200 chr1B 90.743 2517 186 27 3267 5759 660684701 660682208 0.000000e+00 3314.0
6 TraesCS1A01G409200 chr1B 88.757 2268 221 24 3558 5809 660964345 660962096 0.000000e+00 2745.0
7 TraesCS1A01G409200 chr1B 86.744 2497 276 35 3417 5878 661055566 661053090 0.000000e+00 2726.0
8 TraesCS1A01G409200 chr1B 88.006 2176 219 29 3544 5701 660530442 660528291 0.000000e+00 2534.0
9 TraesCS1A01G409200 chr1B 85.237 2364 293 30 3657 6003 660950545 660948221 0.000000e+00 2381.0
10 TraesCS1A01G409200 chr1B 83.663 2430 316 47 3325 5716 661122985 661120599 0.000000e+00 2213.0
11 TraesCS1A01G409200 chr1B 88.267 1858 184 29 3542 5377 660746640 660744795 0.000000e+00 2193.0
12 TraesCS1A01G409200 chr1B 89.273 1734 142 24 3679 5384 660723362 660721645 0.000000e+00 2132.0
13 TraesCS1A01G409200 chr1B 93.961 1242 67 5 1001 2237 660726060 660724822 0.000000e+00 1871.0
14 TraesCS1A01G409200 chr1B 87.483 1510 173 6 4314 5819 660914411 660912914 0.000000e+00 1727.0
15 TraesCS1A01G409200 chr1B 85.714 1638 149 35 4894 6500 660798366 660796783 0.000000e+00 1650.0
16 TraesCS1A01G409200 chr1B 94.626 1042 42 4 2237 3267 660685767 660684729 0.000000e+00 1602.0
17 TraesCS1A01G409200 chr1B 93.963 1027 47 5 2252 3266 660724747 660723724 0.000000e+00 1539.0
18 TraesCS1A01G409200 chr1B 90.753 1168 71 17 995 2150 660966157 660965015 0.000000e+00 1524.0
19 TraesCS1A01G409200 chr1B 83.797 1617 237 17 3762 5364 660997270 660995665 0.000000e+00 1511.0
20 TraesCS1A01G409200 chr1B 89.267 1174 97 16 1001 2167 660652937 660651786 0.000000e+00 1443.0
21 TraesCS1A01G409200 chr1B 92.048 1006 74 5 1001 2001 660749483 660748479 0.000000e+00 1410.0
22 TraesCS1A01G409200 chr1B 92.125 927 48 4 2507 3429 661060426 661059521 0.000000e+00 1284.0
23 TraesCS1A01G409200 chr1B 91.912 816 49 11 1433 2237 660686624 660685815 0.000000e+00 1125.0
24 TraesCS1A01G409200 chr1B 85.688 1069 133 13 4314 5372 660640391 660639333 0.000000e+00 1109.0
25 TraesCS1A01G409200 chr1B 83.991 937 133 12 997 1922 661124581 661123651 0.000000e+00 883.0
26 TraesCS1A01G409200 chr1B 87.967 723 54 15 1433 2150 660531816 660531122 0.000000e+00 822.0
27 TraesCS1A01G409200 chr1B 83.354 823 117 9 1001 1814 660882095 660881284 0.000000e+00 743.0
28 TraesCS1A01G409200 chr1B 86.469 606 52 19 326 906 660919365 660918765 7.420000e-179 638.0
29 TraesCS1A01G409200 chr1B 94.853 408 21 0 1001 1408 661061803 661061396 7.420000e-179 638.0
30 TraesCS1A01G409200 chr1B 92.978 413 26 1 996 1408 660532349 660531940 3.500000e-167 599.0
31 TraesCS1A01G409200 chr1B 88.145 523 36 14 5934 6432 661053078 661052558 3.500000e-167 599.0
32 TraesCS1A01G409200 chr1B 81.405 726 66 35 6101 6785 660682200 660681503 4.660000e-146 529.0
33 TraesCS1A01G409200 chr1B 89.614 414 19 9 5818 6225 660528272 660527877 7.850000e-139 505.0
34 TraesCS1A01G409200 chr1B 90.260 308 20 7 2965 3267 660897029 660896727 1.770000e-105 394.0
35 TraesCS1A01G409200 chr1B 79.862 581 84 23 2367 2925 660907793 660907224 1.770000e-105 394.0
36 TraesCS1A01G409200 chr1B 95.062 243 11 1 5918 6159 660912878 660912636 1.380000e-101 381.0
37 TraesCS1A01G409200 chr1B 94.958 238 11 1 2000 2237 660748396 660748160 8.310000e-99 372.0
38 TraesCS1A01G409200 chr1B 83.848 421 28 22 6277 6658 660962012 660961593 1.390000e-96 364.0
39 TraesCS1A01G409200 chr1B 89.226 297 18 4 3267 3553 660723695 660723403 6.470000e-95 359.0
40 TraesCS1A01G409200 chr1B 90.809 272 17 6 2993 3258 660462010 660461741 2.330000e-94 357.0
41 TraesCS1A01G409200 chr1B 95.000 220 10 1 6566 6785 660796659 660796441 1.810000e-90 344.0
42 TraesCS1A01G409200 chr1B 82.410 307 49 5 5410 5713 660721582 660721278 5.220000e-66 263.0
43 TraesCS1A01G409200 chr1B 80.645 341 46 6 2407 2729 660458997 660458659 5.260000e-61 246.0
44 TraesCS1A01G409200 chr1B 80.175 343 48 6 2405 2729 660894158 660893818 8.790000e-59 239.0
45 TraesCS1A01G409200 chr1B 91.837 147 7 2 6295 6437 660912537 660912392 4.150000e-47 200.0
46 TraesCS1A01G409200 chr1B 81.651 218 33 6 322 536 531528092 531528305 2.520000e-39 174.0
47 TraesCS1A01G409200 chr1B 90.678 118 11 0 6668 6785 661052396 661052279 2.530000e-34 158.0
48 TraesCS1A01G409200 chr1B 89.744 117 12 0 830 946 660687022 660686906 4.240000e-32 150.0
49 TraesCS1A01G409200 chr1B 98.718 78 1 0 6096 6173 660948204 660948127 9.180000e-29 139.0
50 TraesCS1A01G409200 chr1B 87.288 118 9 1 835 946 660966771 660966654 5.520000e-26 130.0
51 TraesCS1A01G409200 chr1B 78.534 191 28 11 3012 3200 660458462 660458283 5.560000e-21 113.0
52 TraesCS1A01G409200 chr1B 92.308 78 6 0 6688 6765 660961598 660961521 2.000000e-20 111.0
53 TraesCS1A01G409200 chr1B 94.366 71 4 0 6499 6569 660796759 660796689 7.190000e-20 110.0
54 TraesCS1A01G409200 chr1B 96.923 65 2 0 6572 6636 661052452 661052388 7.190000e-20 110.0
55 TraesCS1A01G409200 chr1B 77.487 191 30 11 3012 3200 660893621 660893442 1.200000e-17 102.0
56 TraesCS1A01G409200 chr1B 90.909 66 4 2 6228 6292 660527474 660527410 3.370000e-13 87.9
57 TraesCS1A01G409200 chr1B 94.643 56 3 0 6228 6283 660962097 660962042 3.370000e-13 87.9
58 TraesCS1A01G409200 chr1B 97.368 38 0 1 6279 6315 660681975 660681938 5.680000e-06 63.9
59 TraesCS1A01G409200 chr1B 100.000 32 0 0 6246 6277 660944958 660944927 7.350000e-05 60.2
60 TraesCS1A01G409200 chr1B 100.000 29 0 0 6244 6272 677304291 677304319 3.000000e-03 54.7
61 TraesCS1A01G409200 chr1D 91.038 2399 177 16 3450 5830 475178735 475176357 0.000000e+00 3205.0
62 TraesCS1A01G409200 chr1D 85.541 823 108 7 1001 1814 475197435 475196615 0.000000e+00 850.0
63 TraesCS1A01G409200 chr1D 85.766 548 31 9 6277 6778 475175912 475175366 2.780000e-148 536.0
64 TraesCS1A01G409200 chr1D 91.429 385 18 6 5910 6279 475176332 475175948 1.300000e-141 514.0
65 TraesCS1A01G409200 chr1D 79.656 698 95 26 2261 2925 475207641 475206958 6.200000e-125 459.0
66 TraesCS1A01G409200 chr1D 78.286 350 58 12 193 540 205085618 205085285 6.900000e-50 209.0
67 TraesCS1A01G409200 chr1D 100.000 29 0 0 5863 5891 475176361 475176333 3.000000e-03 54.7
68 TraesCS1A01G409200 chr6D 80.187 535 77 23 1 530 6772984 6772474 2.310000e-99 374.0
69 TraesCS1A01G409200 chr6D 79.191 346 56 9 193 536 303028981 303028650 6.850000e-55 226.0
70 TraesCS1A01G409200 chr4B 79.143 537 90 16 3 536 67056959 67057476 1.080000e-92 351.0
71 TraesCS1A01G409200 chr4B 78.098 589 94 29 1 582 591915486 591916046 2.340000e-89 340.0
72 TraesCS1A01G409200 chr3D 76.800 500 90 16 1 500 291167876 291168349 2.430000e-64 257.0
73 TraesCS1A01G409200 chr3D 79.037 353 50 15 229 577 405807255 405807587 3.190000e-53 220.0
74 TraesCS1A01G409200 chr5D 77.363 455 79 17 86 535 5138139 5137704 1.460000e-61 248.0
75 TraesCS1A01G409200 chr7B 76.008 496 92 17 86 577 573267292 573266820 1.470000e-56 231.0
76 TraesCS1A01G409200 chr7B 79.228 337 53 13 193 526 657371611 657371933 1.150000e-52 219.0
77 TraesCS1A01G409200 chr7B 83.824 68 8 3 518 584 102775760 102775695 2.040000e-05 62.1
78 TraesCS1A01G409200 chr6B 78.448 348 54 14 193 536 568081359 568081689 2.480000e-49 207.0
79 TraesCS1A01G409200 chr5B 81.982 222 35 5 362 580 372250177 372249958 4.180000e-42 183.0
80 TraesCS1A01G409200 chr7D 77.008 361 55 20 183 540 453168078 453168413 1.500000e-41 182.0
81 TraesCS1A01G409200 chr7D 77.778 279 45 16 3 274 531112089 531111821 9.110000e-34 156.0
82 TraesCS1A01G409200 chr4D 77.574 272 49 10 3 269 451300989 451301253 3.280000e-33 154.0
83 TraesCS1A01G409200 chr4D 91.111 45 4 0 529 573 150976000 150976044 2.040000e-05 62.1
84 TraesCS1A01G409200 chr4A 78.970 233 40 7 41 271 5429984 5429759 4.240000e-32 150.0
85 TraesCS1A01G409200 chr3A 87.273 55 6 1 523 577 102229232 102229285 2.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G409200 chr1A 570859168 570865952 6784 True 12530.000000 12530 100.000000 1 6785 1 chr1A.!!$R2 6784
1 TraesCS1A01G409200 chr1A 570876503 570878988 2485 True 1203.000000 1356 84.279500 3318 5716 2 chr1A.!!$R3 2398
2 TraesCS1A01G409200 chr1A 16306475 16306995 520 True 322.000000 322 78.229000 1 536 1 chr1A.!!$R1 535
3 TraesCS1A01G409200 chr1B 661120599 661124581 3982 True 1548.000000 2213 83.827000 997 5716 2 chr1B.!!$R18 4719
4 TraesCS1A01G409200 chr1B 660995665 660997270 1605 True 1511.000000 1511 83.797000 3762 5364 1 chr1B.!!$R6 1602
5 TraesCS1A01G409200 chr1B 660651786 660652937 1151 True 1443.000000 1443 89.267000 1001 2167 1 chr1B.!!$R2 1166
6 TraesCS1A01G409200 chr1B 660744795 660749483 4688 True 1325.000000 2193 91.757667 1001 5377 3 chr1B.!!$R11 4376
7 TraesCS1A01G409200 chr1B 660721278 660726060 4782 True 1232.800000 2132 89.766600 1001 5713 5 chr1B.!!$R10 4712
8 TraesCS1A01G409200 chr1B 660681503 660687022 5519 True 1130.650000 3314 90.966333 830 6785 6 chr1B.!!$R9 5955
9 TraesCS1A01G409200 chr1B 660639333 660640391 1058 True 1109.000000 1109 85.688000 4314 5372 1 chr1B.!!$R1 1058
10 TraesCS1A01G409200 chr1B 661052279 661061803 9524 True 919.166667 2726 91.578000 1001 6785 6 chr1B.!!$R17 5784
11 TraesCS1A01G409200 chr1B 660527410 660532349 4939 True 909.580000 2534 89.894800 996 6292 5 chr1B.!!$R8 5296
12 TraesCS1A01G409200 chr1B 660944927 660950545 5618 True 860.066667 2381 94.651667 3657 6277 3 chr1B.!!$R15 2620
13 TraesCS1A01G409200 chr1B 660961521 660966771 5250 True 826.983333 2745 89.599500 835 6765 6 chr1B.!!$R16 5930
14 TraesCS1A01G409200 chr1B 660912392 660914411 2019 True 769.333333 1727 91.460667 4314 6437 3 chr1B.!!$R14 2123
15 TraesCS1A01G409200 chr1B 660881284 660882095 811 True 743.000000 743 83.354000 1001 1814 1 chr1B.!!$R3 813
16 TraesCS1A01G409200 chr1B 660796441 660798366 1925 True 701.333333 1650 91.693333 4894 6785 3 chr1B.!!$R12 1891
17 TraesCS1A01G409200 chr1B 660918765 660919365 600 True 638.000000 638 86.469000 326 906 1 chr1B.!!$R5 580
18 TraesCS1A01G409200 chr1B 660907224 660907793 569 True 394.000000 394 79.862000 2367 2925 1 chr1B.!!$R4 558
19 TraesCS1A01G409200 chr1B 660893442 660897029 3587 True 245.000000 394 82.640667 2405 3267 3 chr1B.!!$R13 862
20 TraesCS1A01G409200 chr1B 660458283 660462010 3727 True 238.666667 357 83.329333 2407 3258 3 chr1B.!!$R7 851
21 TraesCS1A01G409200 chr1D 475175366 475178735 3369 True 1077.425000 3205 92.058250 3450 6778 4 chr1D.!!$R4 3328
22 TraesCS1A01G409200 chr1D 475196615 475197435 820 True 850.000000 850 85.541000 1001 1814 1 chr1D.!!$R2 813
23 TraesCS1A01G409200 chr1D 475206958 475207641 683 True 459.000000 459 79.656000 2261 2925 1 chr1D.!!$R3 664
24 TraesCS1A01G409200 chr6D 6772474 6772984 510 True 374.000000 374 80.187000 1 530 1 chr6D.!!$R1 529
25 TraesCS1A01G409200 chr4B 67056959 67057476 517 False 351.000000 351 79.143000 3 536 1 chr4B.!!$F1 533
26 TraesCS1A01G409200 chr4B 591915486 591916046 560 False 340.000000 340 78.098000 1 582 1 chr4B.!!$F2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 322 0.033796 CATGTCATGGGGGTGAAGCT 60.034 55.0 4.78 0.00 0.00 3.74 F
776 783 0.107459 GGGAGCTCCTGGACATGTTC 60.107 60.0 31.36 7.64 35.95 3.18 F
1209 1680 0.035630 CAAAGGGCTGGAGAGACAGG 60.036 60.0 0.00 0.00 38.90 4.00 F
2530 5622 0.689623 CTGAAGGAAGACTGCCCTGT 59.310 55.0 0.00 0.00 32.12 4.00 F
3354 6712 0.510790 CGTGCACACAACGATAGCAA 59.489 50.0 18.64 0.00 36.91 3.91 F
5111 13490 1.071605 GCCAAGCGTCTGTTCTGTAG 58.928 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1680 1.269444 CGTAGCTAAGATCGCGCACC 61.269 60.000 8.75 0.0 0.00 5.01 R
1774 2359 2.050144 TCTTTCAGGAGCTTCACCAGT 58.950 47.619 0.00 0.0 0.00 4.00 R
2680 6002 3.558418 CCGGTGGTGGTTATTTTCTATCG 59.442 47.826 0.00 0.0 0.00 2.92 R
3773 12001 1.089920 CCTGCATTGAGTAGTGTGCC 58.910 55.000 0.00 0.0 36.79 5.01 R
5307 13698 0.114954 TCAGCTTTTCATTGGCCCCT 59.885 50.000 0.00 0.0 0.00 4.79 R
6462 15897 0.322456 TTTAAGCTCAGGCACGGCAT 60.322 50.000 0.00 0.0 41.70 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.612513 ACAACCAGTGACTTGCCCA 59.387 52.632 0.00 0.00 0.00 5.36
57 61 1.233019 CAGTGACTTGCCCAGTTCTG 58.767 55.000 0.00 0.00 35.01 3.02
84 88 1.132849 AGACCATCATCGACCCCCATA 60.133 52.381 0.00 0.00 0.00 2.74
165 172 2.481185 TGGTTTTACTTCGATGAACGGC 59.519 45.455 5.16 0.00 42.82 5.68
169 176 1.314534 TACTTCGATGAACGGCGGGA 61.315 55.000 13.24 0.00 42.82 5.14
214 221 0.977395 GCATATACCTTCGGGGCTCT 59.023 55.000 0.00 0.00 40.03 4.09
264 271 3.905331 GGGAAGACAAAGGGATCCC 57.095 57.895 24.59 24.59 42.74 3.85
266 273 0.107165 GGAAGACAAAGGGATCCCGG 60.107 60.000 25.48 20.06 41.95 5.73
287 294 3.233684 GCGGTCAGCCCTATACTAATC 57.766 52.381 0.00 0.00 40.81 1.75
297 304 8.612145 TCAGCCCTATACTAATCTAGTGTATCA 58.388 37.037 0.00 0.00 39.81 2.15
299 306 9.415008 AGCCCTATACTAATCTAGTGTATCATG 57.585 37.037 0.00 0.00 39.81 3.07
300 307 9.191479 GCCCTATACTAATCTAGTGTATCATGT 57.809 37.037 0.00 0.00 39.81 3.21
308 315 3.903714 TCTAGTGTATCATGTCATGGGGG 59.096 47.826 12.90 0.00 0.00 5.40
309 316 2.492025 AGTGTATCATGTCATGGGGGT 58.508 47.619 12.90 0.50 0.00 4.95
310 317 2.173356 AGTGTATCATGTCATGGGGGTG 59.827 50.000 12.90 0.00 0.00 4.61
311 318 2.172505 GTGTATCATGTCATGGGGGTGA 59.827 50.000 12.90 0.00 0.00 4.02
312 319 2.849318 TGTATCATGTCATGGGGGTGAA 59.151 45.455 12.90 0.00 0.00 3.18
314 321 0.034186 TCATGTCATGGGGGTGAAGC 60.034 55.000 12.90 0.00 0.00 3.86
315 322 0.033796 CATGTCATGGGGGTGAAGCT 60.034 55.000 4.78 0.00 0.00 3.74
316 323 0.257039 ATGTCATGGGGGTGAAGCTC 59.743 55.000 0.00 0.00 0.00 4.09
317 324 1.077429 GTCATGGGGGTGAAGCTCC 60.077 63.158 0.00 0.00 36.85 4.70
319 326 4.115199 ATGGGGGTGAAGCTCCGC 62.115 66.667 0.00 0.00 39.17 5.54
324 331 4.373116 GGTGAAGCTCCGCGGTGA 62.373 66.667 30.07 9.09 0.00 4.02
420 427 9.491675 TTTGTCTAGTTTGTATAAATTCCGTCA 57.508 29.630 0.00 0.00 0.00 4.35
421 428 9.661563 TTGTCTAGTTTGTATAAATTCCGTCAT 57.338 29.630 0.00 0.00 0.00 3.06
422 429 9.093970 TGTCTAGTTTGTATAAATTCCGTCATG 57.906 33.333 0.00 0.00 0.00 3.07
423 430 9.095065 GTCTAGTTTGTATAAATTCCGTCATGT 57.905 33.333 0.00 0.00 0.00 3.21
424 431 9.661563 TCTAGTTTGTATAAATTCCGTCATGTT 57.338 29.630 0.00 0.00 0.00 2.71
440 447 8.783093 TCCGTCATGTTTATATGAAATTCATCC 58.217 33.333 12.23 0.00 38.69 3.51
441 448 8.567104 CCGTCATGTTTATATGAAATTCATCCA 58.433 33.333 12.23 3.68 38.69 3.41
451 458 6.918892 ATGAAATTCATCCATGTTTGCATG 57.081 33.333 2.07 0.96 38.46 4.06
453 460 7.106890 ATGAAATTCATCCATGTTTGCATGAA 58.893 30.769 2.07 0.00 42.99 2.57
463 470 3.847542 TGTTTGCATGAATTTCATCCGG 58.152 40.909 8.95 0.00 34.28 5.14
464 471 3.257873 TGTTTGCATGAATTTCATCCGGT 59.742 39.130 8.95 0.00 34.28 5.28
467 474 3.847542 TGCATGAATTTCATCCGGTTTG 58.152 40.909 8.95 0.36 34.28 2.93
468 475 3.257873 TGCATGAATTTCATCCGGTTTGT 59.742 39.130 8.95 0.00 34.28 2.83
469 476 4.244862 GCATGAATTTCATCCGGTTTGTT 58.755 39.130 8.95 0.00 34.28 2.83
470 477 4.091800 GCATGAATTTCATCCGGTTTGTTG 59.908 41.667 8.95 0.00 34.28 3.33
471 478 5.468592 CATGAATTTCATCCGGTTTGTTGA 58.531 37.500 8.95 0.00 34.28 3.18
476 483 4.993029 TTCATCCGGTTTGTTGAAAAGT 57.007 36.364 0.00 0.00 0.00 2.66
478 485 3.697045 TCATCCGGTTTGTTGAAAAGTGT 59.303 39.130 0.00 0.00 0.00 3.55
479 486 4.158764 TCATCCGGTTTGTTGAAAAGTGTT 59.841 37.500 0.00 0.00 0.00 3.32
480 487 4.522722 TCCGGTTTGTTGAAAAGTGTTT 57.477 36.364 0.00 0.00 0.00 2.83
481 488 4.238514 TCCGGTTTGTTGAAAAGTGTTTG 58.761 39.130 0.00 0.00 0.00 2.93
485 492 5.175856 CGGTTTGTTGAAAAGTGTTTGACAA 59.824 36.000 0.00 0.00 32.08 3.18
487 494 7.014702 GGTTTGTTGAAAAGTGTTTGACAATG 58.985 34.615 0.00 0.00 33.15 2.82
489 496 7.721286 TTGTTGAAAAGTGTTTGACAATGTT 57.279 28.000 0.00 0.00 30.39 2.71
490 497 7.721286 TGTTGAAAAGTGTTTGACAATGTTT 57.279 28.000 0.00 0.00 0.00 2.83
491 498 7.571026 TGTTGAAAAGTGTTTGACAATGTTTG 58.429 30.769 0.00 0.00 0.00 2.93
492 499 6.163159 TGAAAAGTGTTTGACAATGTTTGC 57.837 33.333 0.00 0.00 0.00 3.68
493 500 4.838665 AAAGTGTTTGACAATGTTTGCG 57.161 36.364 0.00 0.00 0.00 4.85
494 501 2.808244 AGTGTTTGACAATGTTTGCGG 58.192 42.857 0.00 0.00 0.00 5.69
497 504 2.359214 TGTTTGACAATGTTTGCGGCTA 59.641 40.909 0.00 0.00 0.00 3.93
498 505 2.697431 TTGACAATGTTTGCGGCTAC 57.303 45.000 0.00 0.00 0.00 3.58
500 507 0.179200 GACAATGTTTGCGGCTACGG 60.179 55.000 0.00 0.00 41.36 4.02
501 508 0.887387 ACAATGTTTGCGGCTACGGT 60.887 50.000 0.00 0.00 41.36 4.83
502 509 0.179200 CAATGTTTGCGGCTACGGTC 60.179 55.000 0.00 0.00 41.36 4.79
503 510 1.632046 AATGTTTGCGGCTACGGTCG 61.632 55.000 0.00 0.00 44.16 4.79
504 511 3.484547 GTTTGCGGCTACGGTCGG 61.485 66.667 0.00 0.00 41.32 4.79
505 512 3.682885 TTTGCGGCTACGGTCGGA 61.683 61.111 0.00 0.00 41.32 4.55
506 513 3.009192 TTTGCGGCTACGGTCGGAT 62.009 57.895 0.00 0.00 41.08 4.18
507 514 3.709880 TTGCGGCTACGGTCGGATG 62.710 63.158 0.00 0.00 41.08 3.51
508 515 4.944372 GCGGCTACGGTCGGATGG 62.944 72.222 0.00 0.00 41.32 3.51
509 516 4.944372 CGGCTACGGTCGGATGGC 62.944 72.222 0.00 0.00 36.86 4.40
510 517 4.944372 GGCTACGGTCGGATGGCG 62.944 72.222 0.00 0.00 0.00 5.69
511 518 4.944372 GCTACGGTCGGATGGCGG 62.944 72.222 0.00 0.00 0.00 6.13
521 528 3.564218 GATGGCGGCCTCTCCCAT 61.564 66.667 21.46 12.22 41.83 4.00
522 529 3.543536 GATGGCGGCCTCTCCCATC 62.544 68.421 21.46 19.25 45.65 3.51
526 533 4.227134 CGGCCTCTCCCATCCGTG 62.227 72.222 0.00 0.00 37.33 4.94
527 534 3.083997 GGCCTCTCCCATCCGTGT 61.084 66.667 0.00 0.00 0.00 4.49
528 535 2.501610 GCCTCTCCCATCCGTGTC 59.498 66.667 0.00 0.00 0.00 3.67
529 536 3.095347 GCCTCTCCCATCCGTGTCC 62.095 68.421 0.00 0.00 0.00 4.02
530 537 2.786495 CCTCTCCCATCCGTGTCCG 61.786 68.421 0.00 0.00 0.00 4.79
531 538 3.432051 CTCTCCCATCCGTGTCCGC 62.432 68.421 0.00 0.00 0.00 5.54
532 539 3.770040 CTCCCATCCGTGTCCGCA 61.770 66.667 0.00 0.00 0.00 5.69
533 540 3.723235 CTCCCATCCGTGTCCGCAG 62.723 68.421 0.00 0.00 0.00 5.18
534 541 3.770040 CCCATCCGTGTCCGCAGA 61.770 66.667 0.00 0.00 0.00 4.26
535 542 2.509336 CCATCCGTGTCCGCAGAC 60.509 66.667 0.00 0.00 43.83 3.51
536 543 2.880879 CATCCGTGTCCGCAGACG 60.881 66.667 0.00 0.00 46.74 4.18
546 553 2.202797 CGCAGACGGATGTGGGAG 60.203 66.667 0.00 0.00 34.25 4.30
547 554 2.187946 GCAGACGGATGTGGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
548 555 2.359169 GCAGACGGATGTGGGAGGA 61.359 63.158 0.00 0.00 0.00 3.71
549 556 1.899437 GCAGACGGATGTGGGAGGAA 61.899 60.000 0.00 0.00 0.00 3.36
550 557 0.613260 CAGACGGATGTGGGAGGAAA 59.387 55.000 0.00 0.00 0.00 3.13
551 558 1.210478 CAGACGGATGTGGGAGGAAAT 59.790 52.381 0.00 0.00 0.00 2.17
552 559 1.916181 AGACGGATGTGGGAGGAAATT 59.084 47.619 0.00 0.00 0.00 1.82
553 560 2.308866 AGACGGATGTGGGAGGAAATTT 59.691 45.455 0.00 0.00 0.00 1.82
554 561 2.423538 GACGGATGTGGGAGGAAATTTG 59.576 50.000 0.00 0.00 0.00 2.32
555 562 1.134946 CGGATGTGGGAGGAAATTTGC 59.865 52.381 0.68 0.68 0.00 3.68
556 563 1.134946 GGATGTGGGAGGAAATTTGCG 59.865 52.381 3.87 0.00 0.00 4.85
557 564 1.134946 GATGTGGGAGGAAATTTGCGG 59.865 52.381 3.87 0.00 0.00 5.69
558 565 0.897863 TGTGGGAGGAAATTTGCGGG 60.898 55.000 3.87 0.00 0.00 6.13
559 566 1.981853 TGGGAGGAAATTTGCGGGC 60.982 57.895 3.87 0.00 0.00 6.13
560 567 2.721167 GGGAGGAAATTTGCGGGCC 61.721 63.158 3.87 7.29 0.00 5.80
561 568 2.489751 GAGGAAATTTGCGGGCCG 59.510 61.111 24.35 24.35 0.00 6.13
572 579 4.569180 CGGGCCGCCATTGGAGAT 62.569 66.667 15.42 0.00 0.00 2.75
573 580 2.908940 GGGCCGCCATTGGAGATG 60.909 66.667 12.58 0.00 0.00 2.90
574 581 3.599704 GGCCGCCATTGGAGATGC 61.600 66.667 6.95 2.92 0.00 3.91
575 582 3.599704 GCCGCCATTGGAGATGCC 61.600 66.667 6.95 0.00 37.10 4.40
576 583 2.908940 CCGCCATTGGAGATGCCC 60.909 66.667 6.95 0.00 34.97 5.36
577 584 2.124193 CGCCATTGGAGATGCCCA 60.124 61.111 6.95 0.00 34.97 5.36
589 596 5.509498 TGGAGATGCCCAAATTATATAGGC 58.491 41.667 3.54 3.54 44.13 3.93
596 603 6.588719 GCCCAAATTATATAGGCATGTGAA 57.411 37.500 5.33 0.00 43.32 3.18
597 604 6.991938 GCCCAAATTATATAGGCATGTGAAA 58.008 36.000 5.33 0.00 43.32 2.69
598 605 6.868339 GCCCAAATTATATAGGCATGTGAAAC 59.132 38.462 5.33 0.00 43.32 2.78
599 606 7.471260 GCCCAAATTATATAGGCATGTGAAACA 60.471 37.037 5.33 0.00 44.13 2.83
638 645 9.500785 AACATATTTGGGAAGTAACAAAAATGG 57.499 29.630 0.00 0.00 39.69 3.16
639 646 8.875168 ACATATTTGGGAAGTAACAAAAATGGA 58.125 29.630 0.00 0.00 39.69 3.41
640 647 9.889128 CATATTTGGGAAGTAACAAAAATGGAT 57.111 29.630 0.00 0.00 39.69 3.41
692 699 8.491331 TGAAAGAAAACAAGGAATTGAAAAGG 57.509 30.769 0.00 0.00 0.00 3.11
693 700 8.317679 TGAAAGAAAACAAGGAATTGAAAAGGA 58.682 29.630 0.00 0.00 0.00 3.36
694 701 9.161629 GAAAGAAAACAAGGAATTGAAAAGGAA 57.838 29.630 0.00 0.00 0.00 3.36
695 702 8.492673 AAGAAAACAAGGAATTGAAAAGGAAC 57.507 30.769 0.00 0.00 0.00 3.62
696 703 7.619965 AGAAAACAAGGAATTGAAAAGGAACA 58.380 30.769 0.00 0.00 0.00 3.18
697 704 8.100164 AGAAAACAAGGAATTGAAAAGGAACAA 58.900 29.630 0.00 0.00 0.00 2.83
698 705 8.628630 AAAACAAGGAATTGAAAAGGAACAAA 57.371 26.923 0.00 0.00 0.00 2.83
699 706 8.628630 AAACAAGGAATTGAAAAGGAACAAAA 57.371 26.923 0.00 0.00 0.00 2.44
700 707 8.628630 AACAAGGAATTGAAAAGGAACAAAAA 57.371 26.923 0.00 0.00 0.00 1.94
773 780 4.063335 AGGGAGCTCCTGGACATG 57.937 61.111 31.36 0.00 46.07 3.21
774 781 1.081833 AGGGAGCTCCTGGACATGT 59.918 57.895 31.36 0.00 46.07 3.21
775 782 0.548682 AGGGAGCTCCTGGACATGTT 60.549 55.000 31.36 4.38 46.07 2.71
776 783 0.107459 GGGAGCTCCTGGACATGTTC 60.107 60.000 31.36 7.64 35.95 3.18
777 784 0.908198 GGAGCTCCTGGACATGTTCT 59.092 55.000 26.25 0.00 0.00 3.01
778 785 1.280421 GGAGCTCCTGGACATGTTCTT 59.720 52.381 26.25 0.00 0.00 2.52
779 786 2.290577 GGAGCTCCTGGACATGTTCTTT 60.291 50.000 26.25 0.00 0.00 2.52
780 787 3.416156 GAGCTCCTGGACATGTTCTTTT 58.584 45.455 5.55 0.00 0.00 2.27
781 788 3.823304 GAGCTCCTGGACATGTTCTTTTT 59.177 43.478 5.55 0.00 0.00 1.94
782 789 3.823304 AGCTCCTGGACATGTTCTTTTTC 59.177 43.478 5.55 0.00 0.00 2.29
783 790 3.057245 GCTCCTGGACATGTTCTTTTTCC 60.057 47.826 5.55 0.00 0.00 3.13
784 791 3.496331 TCCTGGACATGTTCTTTTTCCC 58.504 45.455 5.55 0.00 0.00 3.97
785 792 3.117322 TCCTGGACATGTTCTTTTTCCCA 60.117 43.478 5.55 2.09 0.00 4.37
786 793 3.005791 CCTGGACATGTTCTTTTTCCCAC 59.994 47.826 5.55 0.00 0.00 4.61
787 794 3.891366 CTGGACATGTTCTTTTTCCCACT 59.109 43.478 5.55 0.00 0.00 4.00
788 795 5.055265 TGGACATGTTCTTTTTCCCACTA 57.945 39.130 5.55 0.00 0.00 2.74
789 796 5.450453 TGGACATGTTCTTTTTCCCACTAA 58.550 37.500 5.55 0.00 0.00 2.24
790 797 6.074648 TGGACATGTTCTTTTTCCCACTAAT 58.925 36.000 5.55 0.00 0.00 1.73
791 798 6.208599 TGGACATGTTCTTTTTCCCACTAATC 59.791 38.462 5.55 0.00 0.00 1.75
792 799 6.208599 GGACATGTTCTTTTTCCCACTAATCA 59.791 38.462 0.00 0.00 0.00 2.57
793 800 7.255801 GGACATGTTCTTTTTCCCACTAATCAA 60.256 37.037 0.00 0.00 0.00 2.57
794 801 8.017418 ACATGTTCTTTTTCCCACTAATCAAA 57.983 30.769 0.00 0.00 0.00 2.69
795 802 7.926018 ACATGTTCTTTTTCCCACTAATCAAAC 59.074 33.333 0.00 0.00 0.00 2.93
796 803 6.500041 TGTTCTTTTTCCCACTAATCAAACG 58.500 36.000 0.00 0.00 0.00 3.60
797 804 6.319152 TGTTCTTTTTCCCACTAATCAAACGA 59.681 34.615 0.00 0.00 0.00 3.85
798 805 7.013846 TGTTCTTTTTCCCACTAATCAAACGAT 59.986 33.333 0.00 0.00 0.00 3.73
799 806 7.141100 TCTTTTTCCCACTAATCAAACGATC 57.859 36.000 0.00 0.00 0.00 3.69
800 807 6.940298 TCTTTTTCCCACTAATCAAACGATCT 59.060 34.615 0.00 0.00 0.00 2.75
801 808 8.098286 TCTTTTTCCCACTAATCAAACGATCTA 58.902 33.333 0.00 0.00 0.00 1.98
802 809 8.624367 TTTTTCCCACTAATCAAACGATCTAA 57.376 30.769 0.00 0.00 0.00 2.10
803 810 8.624367 TTTTCCCACTAATCAAACGATCTAAA 57.376 30.769 0.00 0.00 0.00 1.85
804 811 8.624367 TTTCCCACTAATCAAACGATCTAAAA 57.376 30.769 0.00 0.00 0.00 1.52
805 812 8.624367 TTCCCACTAATCAAACGATCTAAAAA 57.376 30.769 0.00 0.00 0.00 1.94
906 919 2.020131 GCTCGGGCTCACATTGATG 58.980 57.895 0.00 0.00 35.22 3.07
907 920 0.745845 GCTCGGGCTCACATTGATGT 60.746 55.000 0.00 0.00 37.17 3.06
942 955 6.473131 GCATGCAAATTTTCACGATAGAATCA 59.527 34.615 14.21 0.00 41.38 2.57
946 959 7.485595 TGCAAATTTTCACGATAGAATCACATG 59.514 33.333 0.00 0.00 41.38 3.21
947 960 7.514125 GCAAATTTTCACGATAGAATCACATGC 60.514 37.037 0.00 0.00 41.38 4.06
948 961 5.484173 TTTTCACGATAGAATCACATGCC 57.516 39.130 0.00 0.00 41.38 4.40
952 965 3.677121 CACGATAGAATCACATGCCTAGC 59.323 47.826 0.00 0.00 41.38 3.42
954 967 4.039730 ACGATAGAATCACATGCCTAGCTT 59.960 41.667 0.00 0.00 41.38 3.74
955 968 4.624882 CGATAGAATCACATGCCTAGCTTC 59.375 45.833 0.00 0.00 39.76 3.86
956 969 5.566429 CGATAGAATCACATGCCTAGCTTCT 60.566 44.000 0.00 0.00 39.76 2.85
958 971 4.450053 AGAATCACATGCCTAGCTTCTTC 58.550 43.478 0.00 0.00 0.00 2.87
959 972 3.920231 ATCACATGCCTAGCTTCTTCA 57.080 42.857 0.00 0.00 0.00 3.02
960 973 2.977914 TCACATGCCTAGCTTCTTCAC 58.022 47.619 0.00 0.00 0.00 3.18
961 974 2.012673 CACATGCCTAGCTTCTTCACC 58.987 52.381 0.00 0.00 0.00 4.02
963 976 2.286872 CATGCCTAGCTTCTTCACCAG 58.713 52.381 0.00 0.00 0.00 4.00
965 978 1.552337 TGCCTAGCTTCTTCACCAGAG 59.448 52.381 0.00 0.00 31.12 3.35
967 980 2.159114 GCCTAGCTTCTTCACCAGAGAG 60.159 54.545 0.00 0.00 31.12 3.20
968 981 2.159114 CCTAGCTTCTTCACCAGAGAGC 60.159 54.545 0.00 0.00 36.58 4.09
970 983 1.275856 AGCTTCTTCACCAGAGAGCAG 59.724 52.381 0.00 0.00 37.77 4.24
972 985 2.093553 GCTTCTTCACCAGAGAGCAGAT 60.094 50.000 0.00 0.00 36.46 2.90
973 986 3.784338 CTTCTTCACCAGAGAGCAGATC 58.216 50.000 0.00 0.00 31.12 2.75
974 987 2.106566 TCTTCACCAGAGAGCAGATCC 58.893 52.381 0.00 0.00 0.00 3.36
975 988 1.829849 CTTCACCAGAGAGCAGATCCA 59.170 52.381 0.00 0.00 0.00 3.41
976 989 1.482954 TCACCAGAGAGCAGATCCAG 58.517 55.000 0.00 0.00 0.00 3.86
977 990 1.006400 TCACCAGAGAGCAGATCCAGA 59.994 52.381 0.00 0.00 0.00 3.86
979 992 1.006998 ACCAGAGAGCAGATCCAGAGT 59.993 52.381 0.00 0.00 0.00 3.24
980 993 1.682854 CCAGAGAGCAGATCCAGAGTC 59.317 57.143 0.00 0.00 0.00 3.36
981 994 2.377073 CAGAGAGCAGATCCAGAGTCA 58.623 52.381 0.00 0.00 0.00 3.41
982 995 2.759535 CAGAGAGCAGATCCAGAGTCAA 59.240 50.000 0.00 0.00 0.00 3.18
984 997 2.101249 GAGAGCAGATCCAGAGTCAAGG 59.899 54.545 0.00 0.00 0.00 3.61
985 998 0.540923 AGCAGATCCAGAGTCAAGGC 59.459 55.000 0.00 0.00 0.00 4.35
986 999 0.809241 GCAGATCCAGAGTCAAGGCG 60.809 60.000 0.00 0.00 0.00 5.52
987 1000 0.179089 CAGATCCAGAGTCAAGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
988 1001 1.522580 GATCCAGAGTCAAGGCGGC 60.523 63.158 0.00 0.00 0.00 6.53
989 1002 2.244117 GATCCAGAGTCAAGGCGGCA 62.244 60.000 13.08 0.00 0.00 5.69
990 1003 1.841302 ATCCAGAGTCAAGGCGGCAA 61.841 55.000 13.08 0.00 0.00 4.52
991 1004 1.600636 CCAGAGTCAAGGCGGCAAA 60.601 57.895 13.08 0.00 0.00 3.68
992 1005 1.580845 CCAGAGTCAAGGCGGCAAAG 61.581 60.000 13.08 0.00 0.00 2.77
993 1006 1.302832 AGAGTCAAGGCGGCAAAGG 60.303 57.895 13.08 0.00 0.00 3.11
994 1007 2.282462 AGTCAAGGCGGCAAAGGG 60.282 61.111 13.08 0.00 0.00 3.95
1209 1680 0.035630 CAAAGGGCTGGAGAGACAGG 60.036 60.000 0.00 0.00 38.90 4.00
1369 1841 4.074970 GACCCAGATCAAAGAGCTCAAAA 58.925 43.478 17.77 0.00 0.00 2.44
1408 1880 3.984200 GAGCGCCGTGACAGGTACC 62.984 68.421 2.29 2.73 0.00 3.34
1866 2451 4.473199 GAAAAGGAACAACTAATCCGTGC 58.527 43.478 0.00 0.00 40.78 5.34
2036 2740 4.226168 AGCTAGTTTGAACCAGGCTAGATT 59.774 41.667 0.00 0.00 33.05 2.40
2048 2752 5.006386 CCAGGCTAGATTAAATGGTCATCC 58.994 45.833 0.00 0.00 0.00 3.51
2193 3050 4.935352 TTTAGCTTCACAAAACAGGCAT 57.065 36.364 0.00 0.00 0.00 4.40
2198 3055 5.009631 AGCTTCACAAAACAGGCATACATA 58.990 37.500 0.00 0.00 0.00 2.29
2314 3233 1.669795 GCAAGCAAATCAGAAACGGGG 60.670 52.381 0.00 0.00 0.00 5.73
2332 3251 3.142174 GGGGCTCTGCTACATTATGAAC 58.858 50.000 0.00 0.00 0.00 3.18
2337 3256 4.513318 GCTCTGCTACATTATGAACCCTTC 59.487 45.833 0.00 0.00 0.00 3.46
2424 5512 4.790718 ATCCTAGAAATACCCACCCAAC 57.209 45.455 0.00 0.00 0.00 3.77
2530 5622 0.689623 CTGAAGGAAGACTGCCCTGT 59.310 55.000 0.00 0.00 32.12 4.00
2680 6002 3.466836 TGCCACGAGATAAATGGATGAC 58.533 45.455 0.00 0.00 35.33 3.06
2713 6035 3.352648 ACCACCACCGGAATAAATCTTG 58.647 45.455 9.46 0.00 0.00 3.02
2804 6127 4.424842 TGAGGCCAGGAAACCATTAAAAT 58.575 39.130 5.01 0.00 0.00 1.82
2879 6204 8.454570 AAACTTTACTCATTCCCTTTAACGAA 57.545 30.769 0.00 0.00 0.00 3.85
2887 6212 9.462606 ACTCATTCCCTTTAACGAAGATAAAAT 57.537 29.630 0.00 0.00 34.48 1.82
2926 6251 6.540551 TGCACCTACGCAAGATATCAAATTAA 59.459 34.615 5.32 0.00 39.45 1.40
2972 6297 5.127356 TCCGTAAACCAACCAAACATTCTTT 59.873 36.000 0.00 0.00 0.00 2.52
3070 6396 6.127563 TGAGAGTTGTAATCAATTGCATGCAT 60.128 34.615 23.37 7.94 35.92 3.96
3347 6705 3.345808 CTCCCCGTGCACACAACG 61.346 66.667 18.64 1.62 0.00 4.10
3354 6712 0.510790 CGTGCACACAACGATAGCAA 59.489 50.000 18.64 0.00 36.91 3.91
3366 6724 3.357203 ACGATAGCAAGGAGAACAGAGA 58.643 45.455 0.00 0.00 42.67 3.10
3483 10815 1.305046 CGGGTGGTGAGGGTCTACT 60.305 63.158 0.00 0.00 0.00 2.57
3485 10817 1.617804 CGGGTGGTGAGGGTCTACTAA 60.618 57.143 0.00 0.00 0.00 2.24
3486 10818 2.543635 GGGTGGTGAGGGTCTACTAAA 58.456 52.381 0.00 0.00 0.00 1.85
3488 10820 3.522343 GGGTGGTGAGGGTCTACTAAATT 59.478 47.826 0.00 0.00 0.00 1.82
3489 10821 4.383880 GGGTGGTGAGGGTCTACTAAATTC 60.384 50.000 0.00 0.00 0.00 2.17
3490 10822 4.383880 GGTGGTGAGGGTCTACTAAATTCC 60.384 50.000 0.00 0.00 0.00 3.01
3492 10824 4.469945 TGGTGAGGGTCTACTAAATTCCAG 59.530 45.833 0.00 0.00 0.00 3.86
3493 10825 4.141688 GGTGAGGGTCTACTAAATTCCAGG 60.142 50.000 0.00 0.00 0.00 4.45
3519 10868 4.577834 AGGATTTGTGGTTTAAACGGTG 57.422 40.909 12.07 0.00 0.00 4.94
3535 11721 4.023726 ACGGTGCTAAATTCCAAGGTTA 57.976 40.909 0.00 0.00 0.00 2.85
3536 11722 4.007659 ACGGTGCTAAATTCCAAGGTTAG 58.992 43.478 0.00 0.00 0.00 2.34
3651 11865 7.891561 AGGATGCAGTGAGATACTTCTAATAC 58.108 38.462 0.00 0.00 37.60 1.89
3652 11866 6.804295 GGATGCAGTGAGATACTTCTAATACG 59.196 42.308 0.00 0.00 37.60 3.06
3653 11867 6.694877 TGCAGTGAGATACTTCTAATACGT 57.305 37.500 0.00 0.00 37.60 3.57
3654 11868 7.797038 TGCAGTGAGATACTTCTAATACGTA 57.203 36.000 0.00 0.00 37.60 3.57
3707 11931 5.701029 AATTAAGTGCGCAACATTTATGC 57.299 34.783 14.00 0.00 40.41 3.14
3739 11963 8.592105 TTGCCATTATCAAATTAATTGCTAGC 57.408 30.769 8.10 8.10 38.98 3.42
3795 12023 3.535561 GCACACTACTCAATGCAGGTAT 58.464 45.455 0.00 0.00 38.00 2.73
3915 12143 3.551890 CACGCATTACAGGTGTAGCTAAG 59.448 47.826 0.00 0.00 0.00 2.18
3971 12199 2.855209 ATGGCACCTCTAGATGATGC 57.145 50.000 12.39 12.39 35.51 3.91
4058 12286 7.016153 TGGAAGAAGTTTCTGCTAGGATTTA 57.984 36.000 0.11 0.00 37.65 1.40
4120 12364 3.017265 CAAGTTTGCTTGCCAGTAAGG 57.983 47.619 0.00 0.00 44.54 2.69
4163 12407 4.260170 GAGAGACTGCAAGATTCCATTGT 58.740 43.478 0.00 0.00 37.43 2.71
4266 12510 6.488683 CCCACCACTTGAAGACTTGTTTATTA 59.511 38.462 0.00 0.00 0.00 0.98
4380 12624 4.702131 GGAAGTTTGGATCAAGTAGCACAT 59.298 41.667 0.00 0.00 0.00 3.21
4518 12763 2.279741 TCGGATGAGGAGAATTTTGCG 58.720 47.619 0.00 0.00 0.00 4.85
4590 12835 2.171237 TCTGTCCATGCAATCTAGTGGG 59.829 50.000 2.04 0.00 32.58 4.61
4631 12972 5.630680 CAGTTGATGCAATTACAGAAACCAC 59.369 40.000 0.00 0.00 0.00 4.16
4633 12974 3.190327 TGATGCAATTACAGAAACCACGG 59.810 43.478 0.00 0.00 0.00 4.94
4654 12995 2.533266 ACATGTTCGCTCACTGACTT 57.467 45.000 0.00 0.00 0.00 3.01
4873 13226 4.220382 AGACTCTGGATTTGAGAGACTGTG 59.780 45.833 0.00 0.00 39.90 3.66
4921 13282 1.801512 GCGGAGTTGCGGAAATTGC 60.802 57.895 0.00 0.00 0.00 3.56
5082 13458 2.617308 CCTTCGCTATCTTCGTACTGGA 59.383 50.000 0.00 0.00 0.00 3.86
5111 13490 1.071605 GCCAAGCGTCTGTTCTGTAG 58.928 55.000 0.00 0.00 0.00 2.74
5307 13698 3.317406 TCTGGAGCTTGGCATAATAGGA 58.683 45.455 0.00 0.00 0.00 2.94
5309 13700 2.373169 TGGAGCTTGGCATAATAGGAGG 59.627 50.000 0.00 0.00 0.00 4.30
5312 13703 1.888391 GCTTGGCATAATAGGAGGGGC 60.888 57.143 0.00 0.00 0.00 5.80
5336 13727 5.504665 CCAATGAAAAGCTGATCATCGGTAC 60.505 44.000 13.25 0.00 35.29 3.34
5378 13775 8.041919 GCTAAAGGTCTTCTACTTCCACTATTT 58.958 37.037 0.00 0.00 0.00 1.40
5381 13778 7.098074 AGGTCTTCTACTTCCACTATTTACG 57.902 40.000 0.00 0.00 0.00 3.18
5383 13780 5.747675 GTCTTCTACTTCCACTATTTACGCC 59.252 44.000 0.00 0.00 0.00 5.68
5601 14037 2.348998 CGCAGGGTGAAGGCTCTT 59.651 61.111 0.00 0.00 0.00 2.85
5624 14060 4.170256 GAGTGTTCCGTTGAAAAAGCAAA 58.830 39.130 0.00 0.00 30.79 3.68
5652 14088 2.409870 CCCCAAGTGCAGAATCCGC 61.410 63.158 0.00 0.00 0.00 5.54
5682 14118 4.946157 AGAGCCCTTGAAGATTACATGTTG 59.054 41.667 2.30 0.00 0.00 3.33
5718 14335 1.289800 GGGAAGAGGTCGTCGCAAAC 61.290 60.000 5.33 0.00 37.29 2.93
5736 14354 0.457851 ACAGAATCTCGGGCGAAGAG 59.542 55.000 0.00 0.00 37.09 2.85
5775 14393 3.041946 AGAGAGTGACCACCAAGAACTT 58.958 45.455 0.00 0.00 0.00 2.66
5893 14557 0.036952 ACAGCAGTTCGTGGATCTGG 60.037 55.000 6.00 0.00 32.04 3.86
5894 14558 0.247460 CAGCAGTTCGTGGATCTGGA 59.753 55.000 6.00 0.00 32.04 3.86
5895 14559 0.534412 AGCAGTTCGTGGATCTGGAG 59.466 55.000 6.00 0.00 32.04 3.86
5896 14560 0.532573 GCAGTTCGTGGATCTGGAGA 59.467 55.000 6.00 0.00 32.04 3.71
5897 14561 1.066858 GCAGTTCGTGGATCTGGAGAA 60.067 52.381 6.00 0.00 32.04 2.87
5898 14562 2.419297 GCAGTTCGTGGATCTGGAGAAT 60.419 50.000 6.00 0.00 32.04 2.40
5899 14563 3.452474 CAGTTCGTGGATCTGGAGAATC 58.548 50.000 0.00 0.00 0.00 2.52
5960 14626 3.003480 CCTGCTACTTACTGCAAAGTCC 58.997 50.000 7.05 1.90 40.20 3.85
6024 14695 2.760650 ACTCTGTTGAGCGGATCACATA 59.239 45.455 0.00 0.00 43.85 2.29
6090 14767 3.774734 TCCTAAATCTATCGCCAGCCTA 58.225 45.455 0.00 0.00 0.00 3.93
6092 14769 2.440539 AAATCTATCGCCAGCCTACG 57.559 50.000 0.00 0.00 0.00 3.51
6191 14869 0.685097 TGTGTAGCACCCTGAGTTCC 59.315 55.000 0.00 0.00 32.73 3.62
6226 14908 4.022416 GTGGTGGCAAATCTATGTTGTTCA 60.022 41.667 0.00 0.00 0.00 3.18
6339 15767 5.843673 TTCTCTATCAGAACTAGTGCAGG 57.156 43.478 3.00 0.00 36.08 4.85
6440 15875 4.798882 AGGTTGGTTGGTTATTCAGTCAA 58.201 39.130 0.00 0.00 0.00 3.18
6444 15879 5.570205 TGGTTGGTTATTCAGTCAAGGTA 57.430 39.130 0.00 0.00 0.00 3.08
6448 15883 5.416271 TGGTTATTCAGTCAAGGTACTCC 57.584 43.478 0.00 0.00 38.49 3.85
6462 15897 2.764572 GGTACTCCAAGCCTAGCTAACA 59.235 50.000 0.00 0.00 38.25 2.41
6528 15994 4.154195 ACACTAATGCCGATTTTGTGAGTC 59.846 41.667 11.20 0.00 33.07 3.36
6569 17679 0.706433 AACTGAATCTGGGTGGCCAT 59.294 50.000 9.72 0.00 0.00 4.40
6571 17681 1.212935 ACTGAATCTGGGTGGCCATAC 59.787 52.381 9.72 5.56 0.00 2.39
6572 17682 1.212688 CTGAATCTGGGTGGCCATACA 59.787 52.381 9.72 10.72 0.00 2.29
6573 17683 1.064758 TGAATCTGGGTGGCCATACAC 60.065 52.381 9.72 0.00 40.60 2.90
6574 17684 1.212935 GAATCTGGGTGGCCATACACT 59.787 52.381 9.72 0.00 41.09 3.55
6575 17685 2.190398 ATCTGGGTGGCCATACACTA 57.810 50.000 9.72 0.48 41.09 2.74
6576 17686 1.496060 TCTGGGTGGCCATACACTAG 58.504 55.000 9.72 7.72 41.09 2.57
6577 17687 0.469917 CTGGGTGGCCATACACTAGG 59.530 60.000 9.72 0.00 41.09 3.02
6578 17688 0.252974 TGGGTGGCCATACACTAGGT 60.253 55.000 9.72 0.00 41.09 3.08
6581 17691 1.134491 GGTGGCCATACACTAGGTGTC 60.134 57.143 9.72 0.00 43.92 3.67
6583 17693 1.831106 TGGCCATACACTAGGTGTCAG 59.169 52.381 0.00 1.77 43.92 3.51
6663 17852 6.369799 GTTGAAATTCTGCTTCTCTCAACTC 58.630 40.000 6.61 0.00 38.61 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.536006 GCAGAACTGGGCAAGTCACT 60.536 55.000 0.00 0.00 38.56 3.41
57 61 0.460811 TCGATGATGGTCTGCACTGC 60.461 55.000 0.00 0.00 0.00 4.40
84 88 1.454479 CCGCTTTCATGGAGCCCAT 60.454 57.895 13.91 1.21 46.37 4.00
113 120 2.125269 CAGCCGTACGGGAAAGGG 60.125 66.667 33.98 8.73 38.47 3.95
114 121 0.739813 CTTCAGCCGTACGGGAAAGG 60.740 60.000 33.98 15.28 38.47 3.11
115 122 1.359459 GCTTCAGCCGTACGGGAAAG 61.359 60.000 33.98 21.21 38.47 2.62
143 150 3.126343 GCCGTTCATCGAAGTAAAACCAT 59.874 43.478 0.00 0.00 42.86 3.55
149 156 0.458889 CCCGCCGTTCATCGAAGTAA 60.459 55.000 0.00 0.00 42.86 2.24
150 157 1.140161 CCCGCCGTTCATCGAAGTA 59.860 57.895 0.00 0.00 42.86 2.24
154 161 1.447140 CTTTCCCGCCGTTCATCGA 60.447 57.895 0.00 0.00 42.86 3.59
219 226 4.056125 CAGCTCGCTCACCGGACA 62.056 66.667 9.46 0.00 37.59 4.02
273 280 9.415008 CATGATACACTAGATTAGTATAGGGCT 57.585 37.037 0.00 0.00 37.23 5.19
280 287 9.025041 CCCATGACATGATACACTAGATTAGTA 57.975 37.037 17.24 0.00 37.23 1.82
287 294 3.648067 ACCCCCATGACATGATACACTAG 59.352 47.826 17.24 0.00 0.00 2.57
297 304 0.257039 GAGCTTCACCCCCATGACAT 59.743 55.000 0.00 0.00 0.00 3.06
299 306 1.077429 GGAGCTTCACCCCCATGAC 60.077 63.158 0.00 0.00 0.00 3.06
300 307 2.669133 CGGAGCTTCACCCCCATGA 61.669 63.158 0.00 0.00 0.00 3.07
301 308 2.124570 CGGAGCTTCACCCCCATG 60.125 66.667 0.00 0.00 0.00 3.66
344 351 7.784790 AACTAAAACGGTAAAATTATGTGCG 57.215 32.000 0.00 0.00 0.00 5.34
394 401 9.491675 TGACGGAATTTATACAAACTAGACAAA 57.508 29.630 0.00 0.00 0.00 2.83
395 402 9.661563 ATGACGGAATTTATACAAACTAGACAA 57.338 29.630 0.00 0.00 0.00 3.18
396 403 9.093970 CATGACGGAATTTATACAAACTAGACA 57.906 33.333 0.00 0.00 0.00 3.41
397 404 9.095065 ACATGACGGAATTTATACAAACTAGAC 57.905 33.333 0.00 0.00 0.00 2.59
414 421 8.783093 GGATGAATTTCATATAAACATGACGGA 58.217 33.333 11.79 0.00 37.20 4.69
415 422 8.567104 TGGATGAATTTCATATAAACATGACGG 58.433 33.333 11.79 0.00 37.20 4.79
441 448 4.081531 ACCGGATGAAATTCATGCAAACAT 60.082 37.500 23.55 4.68 44.18 2.71
442 449 3.257873 ACCGGATGAAATTCATGCAAACA 59.742 39.130 23.55 0.00 44.18 2.83
443 450 3.848726 ACCGGATGAAATTCATGCAAAC 58.151 40.909 23.55 5.81 44.18 2.93
444 451 4.533919 AACCGGATGAAATTCATGCAAA 57.466 36.364 23.55 0.00 44.18 3.68
445 452 4.244066 CAAACCGGATGAAATTCATGCAA 58.756 39.130 23.55 0.00 44.18 4.08
446 453 3.257873 ACAAACCGGATGAAATTCATGCA 59.742 39.130 23.55 0.00 44.18 3.96
447 454 3.848726 ACAAACCGGATGAAATTCATGC 58.151 40.909 13.82 15.08 41.12 4.06
448 455 5.468592 TCAACAAACCGGATGAAATTCATG 58.531 37.500 13.82 1.78 37.20 3.07
449 456 5.720371 TCAACAAACCGGATGAAATTCAT 57.280 34.783 9.46 8.39 40.34 2.57
450 457 5.521906 TTCAACAAACCGGATGAAATTCA 57.478 34.783 9.46 0.00 0.00 2.57
451 458 6.478673 ACTTTTCAACAAACCGGATGAAATTC 59.521 34.615 9.46 0.00 40.36 2.17
453 460 5.752955 CACTTTTCAACAAACCGGATGAAAT 59.247 36.000 9.46 0.74 40.36 2.17
457 464 4.040445 ACACTTTTCAACAAACCGGATG 57.960 40.909 9.46 9.74 0.00 3.51
458 465 4.729227 AACACTTTTCAACAAACCGGAT 57.271 36.364 9.46 0.00 0.00 4.18
460 467 4.090786 GTCAAACACTTTTCAACAAACCGG 59.909 41.667 0.00 0.00 0.00 5.28
461 468 4.681942 TGTCAAACACTTTTCAACAAACCG 59.318 37.500 0.00 0.00 0.00 4.44
463 470 7.571892 ACATTGTCAAACACTTTTCAACAAAC 58.428 30.769 0.00 0.00 33.92 2.93
464 471 7.721286 ACATTGTCAAACACTTTTCAACAAA 57.279 28.000 0.00 0.00 33.92 2.83
467 474 6.519419 GCAAACATTGTCAAACACTTTTCAAC 59.481 34.615 0.00 0.00 0.00 3.18
468 475 6.597614 GCAAACATTGTCAAACACTTTTCAA 58.402 32.000 0.00 0.00 0.00 2.69
469 476 5.164012 CGCAAACATTGTCAAACACTTTTCA 60.164 36.000 0.00 0.00 0.00 2.69
470 477 5.247340 CGCAAACATTGTCAAACACTTTTC 58.753 37.500 0.00 0.00 0.00 2.29
471 478 4.092675 CCGCAAACATTGTCAAACACTTTT 59.907 37.500 0.00 0.00 0.00 2.27
476 483 1.135915 AGCCGCAAACATTGTCAAACA 59.864 42.857 0.00 0.00 0.00 2.83
478 485 2.603412 CGTAGCCGCAAACATTGTCAAA 60.603 45.455 0.00 0.00 0.00 2.69
479 486 1.069568 CGTAGCCGCAAACATTGTCAA 60.070 47.619 0.00 0.00 0.00 3.18
480 487 0.515127 CGTAGCCGCAAACATTGTCA 59.485 50.000 0.00 0.00 0.00 3.58
481 488 0.179200 CCGTAGCCGCAAACATTGTC 60.179 55.000 0.00 0.00 0.00 3.18
485 492 2.098233 CGACCGTAGCCGCAAACAT 61.098 57.895 0.00 0.00 0.00 2.71
487 494 3.484547 CCGACCGTAGCCGCAAAC 61.485 66.667 0.00 0.00 0.00 2.93
489 496 3.454573 ATCCGACCGTAGCCGCAA 61.455 61.111 0.00 0.00 0.00 4.85
490 497 4.201679 CATCCGACCGTAGCCGCA 62.202 66.667 0.00 0.00 0.00 5.69
491 498 4.944372 CCATCCGACCGTAGCCGC 62.944 72.222 0.00 0.00 0.00 6.53
492 499 4.944372 GCCATCCGACCGTAGCCG 62.944 72.222 0.00 0.00 0.00 5.52
493 500 4.944372 CGCCATCCGACCGTAGCC 62.944 72.222 0.00 0.00 40.02 3.93
494 501 4.944372 CCGCCATCCGACCGTAGC 62.944 72.222 0.00 0.00 40.02 3.58
500 507 4.593864 GAGAGGCCGCCATCCGAC 62.594 72.222 13.15 0.00 40.02 4.79
504 511 3.543536 GATGGGAGAGGCCGCCATC 62.544 68.421 13.15 9.13 37.63 3.51
505 512 3.564218 GATGGGAGAGGCCGCCAT 61.564 66.667 13.15 0.00 37.63 4.40
510 517 3.083997 ACACGGATGGGAGAGGCC 61.084 66.667 0.00 0.00 0.00 5.19
511 518 2.501610 GACACGGATGGGAGAGGC 59.498 66.667 0.00 0.00 0.00 4.70
513 520 2.808315 CGGACACGGATGGGAGAG 59.192 66.667 0.00 0.00 36.18 3.20
514 521 3.458163 GCGGACACGGATGGGAGA 61.458 66.667 0.00 0.00 41.36 3.71
515 522 3.723235 CTGCGGACACGGATGGGAG 62.723 68.421 0.00 0.00 40.49 4.30
518 525 2.509336 GTCTGCGGACACGGATGG 60.509 66.667 21.02 0.00 40.49 3.51
519 526 2.880879 CGTCTGCGGACACGGATG 60.881 66.667 24.91 4.09 42.21 3.51
529 536 2.202797 CTCCCACATCCGTCTGCG 60.203 66.667 0.00 0.00 37.95 5.18
530 537 1.899437 TTCCTCCCACATCCGTCTGC 61.899 60.000 0.00 0.00 0.00 4.26
531 538 0.613260 TTTCCTCCCACATCCGTCTG 59.387 55.000 0.00 0.00 0.00 3.51
532 539 1.584724 ATTTCCTCCCACATCCGTCT 58.415 50.000 0.00 0.00 0.00 4.18
533 540 2.420058 AATTTCCTCCCACATCCGTC 57.580 50.000 0.00 0.00 0.00 4.79
534 541 2.446435 CAAATTTCCTCCCACATCCGT 58.554 47.619 0.00 0.00 0.00 4.69
535 542 1.134946 GCAAATTTCCTCCCACATCCG 59.865 52.381 0.00 0.00 0.00 4.18
536 543 1.134946 CGCAAATTTCCTCCCACATCC 59.865 52.381 0.00 0.00 0.00 3.51
537 544 1.134946 CCGCAAATTTCCTCCCACATC 59.865 52.381 0.00 0.00 0.00 3.06
538 545 1.185315 CCGCAAATTTCCTCCCACAT 58.815 50.000 0.00 0.00 0.00 3.21
539 546 0.897863 CCCGCAAATTTCCTCCCACA 60.898 55.000 0.00 0.00 0.00 4.17
540 547 1.890174 CCCGCAAATTTCCTCCCAC 59.110 57.895 0.00 0.00 0.00 4.61
541 548 1.981853 GCCCGCAAATTTCCTCCCA 60.982 57.895 0.00 0.00 0.00 4.37
542 549 2.721167 GGCCCGCAAATTTCCTCCC 61.721 63.158 0.00 0.00 0.00 4.30
543 550 2.892640 GGCCCGCAAATTTCCTCC 59.107 61.111 0.00 0.00 0.00 4.30
544 551 2.489751 CGGCCCGCAAATTTCCTC 59.510 61.111 0.00 0.00 0.00 3.71
555 562 4.569180 ATCTCCAATGGCGGCCCG 62.569 66.667 17.97 0.00 0.00 6.13
556 563 2.908940 CATCTCCAATGGCGGCCC 60.909 66.667 17.97 0.00 0.00 5.80
557 564 3.599704 GCATCTCCAATGGCGGCC 61.600 66.667 13.32 13.32 0.00 6.13
558 565 3.599704 GGCATCTCCAATGGCGGC 61.600 66.667 0.00 0.00 34.93 6.53
559 566 2.908940 GGGCATCTCCAATGGCGG 60.909 66.667 0.00 0.00 44.39 6.13
560 567 1.321805 TTTGGGCATCTCCAATGGCG 61.322 55.000 0.00 0.00 45.17 5.69
561 568 1.125633 ATTTGGGCATCTCCAATGGC 58.874 50.000 0.00 3.20 45.17 4.40
562 569 6.862469 ATATAATTTGGGCATCTCCAATGG 57.138 37.500 0.00 0.00 45.17 3.16
563 570 7.417116 GCCTATATAATTTGGGCATCTCCAATG 60.417 40.741 5.33 0.00 45.17 2.82
564 571 6.608808 GCCTATATAATTTGGGCATCTCCAAT 59.391 38.462 5.33 0.00 45.17 3.16
565 572 5.951747 GCCTATATAATTTGGGCATCTCCAA 59.048 40.000 5.33 0.00 44.29 3.53
566 573 5.015072 TGCCTATATAATTTGGGCATCTCCA 59.985 40.000 8.23 0.00 46.35 3.86
567 574 5.509498 TGCCTATATAATTTGGGCATCTCC 58.491 41.667 8.23 0.00 46.35 3.71
573 580 6.588719 TTCACATGCCTATATAATTTGGGC 57.411 37.500 3.54 3.54 42.73 5.36
574 581 7.950512 TGTTTCACATGCCTATATAATTTGGG 58.049 34.615 0.00 0.00 0.00 4.12
575 582 9.814899 TTTGTTTCACATGCCTATATAATTTGG 57.185 29.630 0.00 0.00 0.00 3.28
612 619 9.500785 CCATTTTTGTTACTTCCCAAATATGTT 57.499 29.630 11.69 0.00 37.84 2.71
613 620 8.875168 TCCATTTTTGTTACTTCCCAAATATGT 58.125 29.630 11.69 0.00 37.84 2.29
614 621 9.889128 ATCCATTTTTGTTACTTCCCAAATATG 57.111 29.630 0.00 0.00 38.55 1.78
666 673 9.112725 CCTTTTCAATTCCTTGTTTTCTTTCAT 57.887 29.630 0.00 0.00 33.87 2.57
667 674 8.317679 TCCTTTTCAATTCCTTGTTTTCTTTCA 58.682 29.630 0.00 0.00 33.87 2.69
668 675 8.716646 TCCTTTTCAATTCCTTGTTTTCTTTC 57.283 30.769 0.00 0.00 33.87 2.62
669 676 8.946085 GTTCCTTTTCAATTCCTTGTTTTCTTT 58.054 29.630 0.00 0.00 33.87 2.52
670 677 8.100164 TGTTCCTTTTCAATTCCTTGTTTTCTT 58.900 29.630 0.00 0.00 33.87 2.52
671 678 7.619965 TGTTCCTTTTCAATTCCTTGTTTTCT 58.380 30.769 0.00 0.00 33.87 2.52
672 679 7.841915 TGTTCCTTTTCAATTCCTTGTTTTC 57.158 32.000 0.00 0.00 33.87 2.29
673 680 8.628630 TTTGTTCCTTTTCAATTCCTTGTTTT 57.371 26.923 0.00 0.00 33.87 2.43
674 681 8.628630 TTTTGTTCCTTTTCAATTCCTTGTTT 57.371 26.923 0.00 0.00 33.87 2.83
675 682 8.628630 TTTTTGTTCCTTTTCAATTCCTTGTT 57.371 26.923 0.00 0.00 33.87 2.83
752 759 1.149101 TGTCCAGGAGCTCCCTTTTT 58.851 50.000 29.54 7.47 44.85 1.94
753 760 1.005215 CATGTCCAGGAGCTCCCTTTT 59.995 52.381 29.54 7.91 44.85 2.27
754 761 0.622665 CATGTCCAGGAGCTCCCTTT 59.377 55.000 29.54 8.34 44.85 3.11
755 762 0.548682 ACATGTCCAGGAGCTCCCTT 60.549 55.000 29.54 9.19 44.85 3.95
757 764 0.107459 GAACATGTCCAGGAGCTCCC 60.107 60.000 29.54 14.36 36.42 4.30
758 765 0.908198 AGAACATGTCCAGGAGCTCC 59.092 55.000 26.22 26.22 0.00 4.70
759 766 2.777832 AAGAACATGTCCAGGAGCTC 57.222 50.000 4.71 4.71 0.00 4.09
760 767 3.515602 AAAAGAACATGTCCAGGAGCT 57.484 42.857 0.00 0.00 0.00 4.09
761 768 3.057245 GGAAAAAGAACATGTCCAGGAGC 60.057 47.826 0.00 0.00 0.00 4.70
762 769 3.507622 GGGAAAAAGAACATGTCCAGGAG 59.492 47.826 0.00 0.00 0.00 3.69
763 770 3.117322 TGGGAAAAAGAACATGTCCAGGA 60.117 43.478 0.00 0.00 0.00 3.86
764 771 3.005791 GTGGGAAAAAGAACATGTCCAGG 59.994 47.826 0.00 0.00 0.00 4.45
765 772 3.891366 AGTGGGAAAAAGAACATGTCCAG 59.109 43.478 0.00 0.00 0.00 3.86
766 773 3.909732 AGTGGGAAAAAGAACATGTCCA 58.090 40.909 0.00 0.00 0.00 4.02
767 774 6.208599 TGATTAGTGGGAAAAAGAACATGTCC 59.791 38.462 0.00 0.00 0.00 4.02
768 775 7.214467 TGATTAGTGGGAAAAAGAACATGTC 57.786 36.000 0.00 0.00 0.00 3.06
769 776 7.595819 TTGATTAGTGGGAAAAAGAACATGT 57.404 32.000 0.00 0.00 0.00 3.21
770 777 7.114811 CGTTTGATTAGTGGGAAAAAGAACATG 59.885 37.037 0.00 0.00 0.00 3.21
771 778 7.013846 TCGTTTGATTAGTGGGAAAAAGAACAT 59.986 33.333 0.00 0.00 0.00 2.71
772 779 6.319152 TCGTTTGATTAGTGGGAAAAAGAACA 59.681 34.615 0.00 0.00 0.00 3.18
773 780 6.731164 TCGTTTGATTAGTGGGAAAAAGAAC 58.269 36.000 0.00 0.00 0.00 3.01
774 781 6.945938 TCGTTTGATTAGTGGGAAAAAGAA 57.054 33.333 0.00 0.00 0.00 2.52
775 782 6.940298 AGATCGTTTGATTAGTGGGAAAAAGA 59.060 34.615 0.00 0.00 34.09 2.52
776 783 7.145932 AGATCGTTTGATTAGTGGGAAAAAG 57.854 36.000 0.00 0.00 34.09 2.27
777 784 8.624367 TTAGATCGTTTGATTAGTGGGAAAAA 57.376 30.769 0.00 0.00 34.09 1.94
778 785 8.624367 TTTAGATCGTTTGATTAGTGGGAAAA 57.376 30.769 0.00 0.00 34.09 2.29
779 786 8.624367 TTTTAGATCGTTTGATTAGTGGGAAA 57.376 30.769 0.00 0.00 34.09 3.13
780 787 8.624367 TTTTTAGATCGTTTGATTAGTGGGAA 57.376 30.769 0.00 0.00 34.09 3.97
833 840 9.178758 GGAGTATGTGGATTTGAATCTTAGTTT 57.821 33.333 3.94 0.00 35.73 2.66
839 846 8.057623 AGAAATGGAGTATGTGGATTTGAATCT 58.942 33.333 3.94 0.00 35.73 2.40
942 955 1.630369 TGGTGAAGAAGCTAGGCATGT 59.370 47.619 0.00 0.00 0.00 3.21
946 959 1.827969 TCTCTGGTGAAGAAGCTAGGC 59.172 52.381 0.00 0.00 33.37 3.93
947 960 2.159114 GCTCTCTGGTGAAGAAGCTAGG 60.159 54.545 0.00 0.00 36.71 3.02
948 961 2.495270 TGCTCTCTGGTGAAGAAGCTAG 59.505 50.000 0.00 0.00 38.65 3.42
952 965 3.430651 GGATCTGCTCTCTGGTGAAGAAG 60.431 52.174 0.00 0.00 33.37 2.85
954 967 2.106566 GGATCTGCTCTCTGGTGAAGA 58.893 52.381 0.00 0.00 0.00 2.87
955 968 1.829849 TGGATCTGCTCTCTGGTGAAG 59.170 52.381 0.00 0.00 0.00 3.02
956 969 1.829849 CTGGATCTGCTCTCTGGTGAA 59.170 52.381 0.00 0.00 0.00 3.18
958 971 1.409790 CTCTGGATCTGCTCTCTGGTG 59.590 57.143 0.00 0.00 0.00 4.17
959 972 1.006998 ACTCTGGATCTGCTCTCTGGT 59.993 52.381 0.00 0.00 0.00 4.00
960 973 1.682854 GACTCTGGATCTGCTCTCTGG 59.317 57.143 0.00 0.00 0.00 3.86
961 974 2.377073 TGACTCTGGATCTGCTCTCTG 58.623 52.381 0.00 0.00 0.00 3.35
963 976 2.101249 CCTTGACTCTGGATCTGCTCTC 59.899 54.545 0.00 0.00 0.00 3.20
965 978 1.473080 GCCTTGACTCTGGATCTGCTC 60.473 57.143 0.00 0.00 0.00 4.26
967 980 0.809241 CGCCTTGACTCTGGATCTGC 60.809 60.000 0.00 0.00 0.00 4.26
968 981 0.179089 CCGCCTTGACTCTGGATCTG 60.179 60.000 0.00 0.00 0.00 2.90
970 983 1.522580 GCCGCCTTGACTCTGGATC 60.523 63.158 0.00 0.00 0.00 3.36
972 985 2.050836 TTTGCCGCCTTGACTCTGGA 62.051 55.000 0.00 0.00 0.00 3.86
973 986 1.580845 CTTTGCCGCCTTGACTCTGG 61.581 60.000 0.00 0.00 0.00 3.86
974 987 1.580845 CCTTTGCCGCCTTGACTCTG 61.581 60.000 0.00 0.00 0.00 3.35
975 988 1.302832 CCTTTGCCGCCTTGACTCT 60.303 57.895 0.00 0.00 0.00 3.24
976 989 2.335712 CCCTTTGCCGCCTTGACTC 61.336 63.158 0.00 0.00 0.00 3.36
977 990 2.282462 CCCTTTGCCGCCTTGACT 60.282 61.111 0.00 0.00 0.00 3.41
979 992 3.567579 CTCCCCTTTGCCGCCTTGA 62.568 63.158 0.00 0.00 0.00 3.02
980 993 3.064324 CTCCCCTTTGCCGCCTTG 61.064 66.667 0.00 0.00 0.00 3.61
981 994 3.256960 TCTCCCCTTTGCCGCCTT 61.257 61.111 0.00 0.00 0.00 4.35
982 995 3.721706 CTCTCCCCTTTGCCGCCT 61.722 66.667 0.00 0.00 0.00 5.52
984 997 1.821332 CATCTCTCCCCTTTGCCGC 60.821 63.158 0.00 0.00 0.00 6.53
985 998 1.153086 CCATCTCTCCCCTTTGCCG 60.153 63.158 0.00 0.00 0.00 5.69
986 999 1.454663 GCCATCTCTCCCCTTTGCC 60.455 63.158 0.00 0.00 0.00 4.52
987 1000 1.821332 CGCCATCTCTCCCCTTTGC 60.821 63.158 0.00 0.00 0.00 3.68
988 1001 1.153086 CCGCCATCTCTCCCCTTTG 60.153 63.158 0.00 0.00 0.00 2.77
989 1002 2.378634 CCCGCCATCTCTCCCCTTT 61.379 63.158 0.00 0.00 0.00 3.11
990 1003 2.770048 CCCGCCATCTCTCCCCTT 60.770 66.667 0.00 0.00 0.00 3.95
991 1004 4.888325 CCCCGCCATCTCTCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
994 1007 3.866582 CACCCCCGCCATCTCTCC 61.867 72.222 0.00 0.00 0.00 3.71
1209 1680 1.269444 CGTAGCTAAGATCGCGCACC 61.269 60.000 8.75 0.00 0.00 5.01
1408 1880 2.497675 TGCAAGAGTAGGTAGGAAGCTG 59.502 50.000 0.00 0.00 34.60 4.24
1774 2359 2.050144 TCTTTCAGGAGCTTCACCAGT 58.950 47.619 0.00 0.00 0.00 4.00
1866 2451 8.733458 TCTTTCCTGTCAAGATATGTTTGATTG 58.267 33.333 3.35 0.00 36.96 2.67
2036 2740 6.214615 TCAAGACAACTAGGGATGACCATTTA 59.785 38.462 0.00 0.00 43.89 1.40
2048 2752 9.141400 GAACTAAACATACTCAAGACAACTAGG 57.859 37.037 0.00 0.00 0.00 3.02
2212 3070 6.006449 GCTATCATTACATGGAGGGTTGAAT 58.994 40.000 0.00 0.00 0.00 2.57
2314 3233 4.078639 AGGGTTCATAATGTAGCAGAGC 57.921 45.455 0.00 0.00 0.00 4.09
2477 5565 6.715464 ACGCGATAAATAGTTTCATTCCTTG 58.285 36.000 15.93 0.00 0.00 3.61
2680 6002 3.558418 CCGGTGGTGGTTATTTTCTATCG 59.442 47.826 0.00 0.00 0.00 2.92
2713 6035 4.021544 TGAGCAAATGGTTATGGTGGTTTC 60.022 41.667 0.00 0.00 0.00 2.78
2804 6127 7.944729 AGGTGACGTTAAAAGGTATACTCTA 57.055 36.000 2.25 0.00 0.00 2.43
2887 6212 5.577945 GCGTAGGTGCATTTACTGTTACTTA 59.422 40.000 0.00 0.00 34.15 2.24
2926 6251 6.573434 GGAACTCATTTCTTTCACACCTTTT 58.427 36.000 0.00 0.00 34.26 2.27
2946 6271 3.779271 TGTTTGGTTGGTTTACGGAAC 57.221 42.857 0.00 0.00 37.53 3.62
2972 6297 5.123820 CAGCCATGTTTTTGCTAGCTTAGTA 59.876 40.000 17.23 0.00 33.16 1.82
3237 6567 3.810373 CGAATGTACAAGGTGCTTGAAC 58.190 45.455 0.00 0.00 43.42 3.18
3347 6705 5.062809 CGTTTTCTCTGTTCTCCTTGCTATC 59.937 44.000 0.00 0.00 0.00 2.08
3354 6712 2.698797 TCCACGTTTTCTCTGTTCTCCT 59.301 45.455 0.00 0.00 0.00 3.69
3366 6724 6.584185 AGGCTTGTATTTTATCCACGTTTT 57.416 33.333 0.00 0.00 0.00 2.43
3473 10805 4.038633 ACCCTGGAATTTAGTAGACCCTC 58.961 47.826 0.00 0.00 0.00 4.30
3483 10815 6.439058 CCACAAATCCTTAACCCTGGAATTTA 59.561 38.462 0.00 0.00 35.81 1.40
3485 10817 4.777366 CCACAAATCCTTAACCCTGGAATT 59.223 41.667 0.00 0.00 35.81 2.17
3486 10818 4.202781 ACCACAAATCCTTAACCCTGGAAT 60.203 41.667 0.00 0.00 35.81 3.01
3488 10820 2.719705 ACCACAAATCCTTAACCCTGGA 59.280 45.455 0.00 0.00 36.72 3.86
3489 10821 3.169512 ACCACAAATCCTTAACCCTGG 57.830 47.619 0.00 0.00 0.00 4.45
3490 10822 6.658188 TTAAACCACAAATCCTTAACCCTG 57.342 37.500 0.00 0.00 0.00 4.45
3492 10824 5.921976 CGTTTAAACCACAAATCCTTAACCC 59.078 40.000 12.66 0.00 0.00 4.11
3493 10825 5.921976 CCGTTTAAACCACAAATCCTTAACC 59.078 40.000 12.66 0.00 0.00 2.85
3519 10868 9.841880 CTTTAAGTTCTAACCTTGGAATTTAGC 57.158 33.333 0.00 0.00 33.69 3.09
3607 11821 5.160607 TCCTCATGGTAAGTGAAAACGAT 57.839 39.130 0.00 0.00 34.23 3.73
3609 11823 4.437390 GCATCCTCATGGTAAGTGAAAACG 60.437 45.833 0.00 0.00 34.23 3.60
3739 11963 2.724690 CTCGTTAACCGTGAGACTTGTG 59.275 50.000 0.00 0.00 37.94 3.33
3773 12001 1.089920 CCTGCATTGAGTAGTGTGCC 58.910 55.000 0.00 0.00 36.79 5.01
3795 12023 8.499403 TCCATACGTCATCAATAACAATGAAA 57.501 30.769 0.00 0.00 33.89 2.69
3915 12143 3.232213 TCTGAGACGGAACAACATAGC 57.768 47.619 0.00 0.00 0.00 2.97
3971 12199 9.144747 TCTTAAAGAACAATCTTCGAGAATCAG 57.855 33.333 0.00 0.00 45.19 2.90
4120 12364 3.953612 TCCCATTCATCCTTGTTATGTGC 59.046 43.478 0.00 0.00 0.00 4.57
4163 12407 8.664798 CATCATTATCAAACGAAGAACCAGTAA 58.335 33.333 0.00 0.00 0.00 2.24
4266 12510 9.469097 GAGTCCTCTGGATATATACACAAGTAT 57.531 37.037 0.00 0.00 38.11 2.12
4518 12763 5.107065 GCATATACGCCCATTTAAGACAGTC 60.107 44.000 0.00 0.00 0.00 3.51
4590 12835 0.756815 CTGCCCCTTTATGCCCTTCC 60.757 60.000 0.00 0.00 0.00 3.46
4631 12972 0.992072 CAGTGAGCGAACATGTACCG 59.008 55.000 14.06 14.06 0.00 4.02
4633 12974 2.947852 AGTCAGTGAGCGAACATGTAC 58.052 47.619 0.00 0.00 0.00 2.90
4705 13058 4.202609 ACATTCTTCAAGATCCAACACCCT 60.203 41.667 0.00 0.00 0.00 4.34
4873 13226 5.423015 TGATGGCAGTCTTAGAAGTGAATC 58.577 41.667 0.00 1.42 0.00 2.52
4906 13267 1.067199 CGCAGCAATTTCCGCAACTC 61.067 55.000 0.00 0.00 0.00 3.01
4921 13282 1.662629 CCTGCTGACAAATAGACGCAG 59.337 52.381 0.00 0.00 43.17 5.18
5082 13458 1.036707 GACGCTTGGCTATCTCTCCT 58.963 55.000 0.00 0.00 0.00 3.69
5111 13490 2.492773 GGGTATGTGCAGCATGGGC 61.493 63.158 0.00 0.00 38.47 5.36
5307 13698 0.114954 TCAGCTTTTCATTGGCCCCT 59.885 50.000 0.00 0.00 0.00 4.79
5309 13700 1.826720 TGATCAGCTTTTCATTGGCCC 59.173 47.619 0.00 0.00 0.00 5.80
5312 13703 3.961182 CCGATGATCAGCTTTTCATTGG 58.039 45.455 20.28 20.28 43.89 3.16
5336 13727 5.416952 ACCTTTAGCAGTTTGAATCCATCAG 59.583 40.000 0.00 0.00 39.77 2.90
5378 13775 2.670251 CAGCAAAACGGGGGCGTA 60.670 61.111 0.00 0.00 0.00 4.42
5381 13778 2.022240 TTCAACAGCAAAACGGGGGC 62.022 55.000 0.00 0.00 0.00 5.80
5383 13780 0.744281 ACTTCAACAGCAAAACGGGG 59.256 50.000 0.00 0.00 0.00 5.73
5601 14037 2.750166 TGCTTTTTCAACGGAACACTCA 59.250 40.909 0.00 0.00 31.35 3.41
5624 14060 1.109323 GCACTTGGGGAGCAAGTTGT 61.109 55.000 4.48 0.00 40.51 3.32
5652 14088 1.004560 TTCAAGGGCTCTGCTGACG 60.005 57.895 0.00 0.00 0.00 4.35
5682 14118 1.909302 TCCCACTCCTTGTCATCCTTC 59.091 52.381 0.00 0.00 0.00 3.46
5718 14335 0.741326 TCTCTTCGCCCGAGATTCTG 59.259 55.000 0.00 0.00 32.86 3.02
5736 14354 4.277476 TCTCTCATTCTTCTGGTCTCCTC 58.723 47.826 0.00 0.00 0.00 3.71
5775 14393 1.490490 CCAGGATTAAGCTAGGTGGCA 59.510 52.381 0.00 0.00 34.17 4.92
5893 14557 3.002791 TGATTGCTGTTCGTGGATTCTC 58.997 45.455 0.00 0.00 0.00 2.87
5894 14558 3.057969 TGATTGCTGTTCGTGGATTCT 57.942 42.857 0.00 0.00 0.00 2.40
5895 14559 3.189287 ACTTGATTGCTGTTCGTGGATTC 59.811 43.478 0.00 0.00 0.00 2.52
5896 14560 3.149196 ACTTGATTGCTGTTCGTGGATT 58.851 40.909 0.00 0.00 0.00 3.01
5897 14561 2.783135 ACTTGATTGCTGTTCGTGGAT 58.217 42.857 0.00 0.00 0.00 3.41
5898 14562 2.254546 ACTTGATTGCTGTTCGTGGA 57.745 45.000 0.00 0.00 0.00 4.02
5899 14563 4.406069 CATTACTTGATTGCTGTTCGTGG 58.594 43.478 0.00 0.00 0.00 4.94
5900 14564 3.848019 GCATTACTTGATTGCTGTTCGTG 59.152 43.478 0.00 0.00 32.68 4.35
5901 14565 3.501828 TGCATTACTTGATTGCTGTTCGT 59.498 39.130 0.00 0.00 35.78 3.85
5902 14566 4.082274 TGCATTACTTGATTGCTGTTCG 57.918 40.909 0.00 0.00 35.78 3.95
5903 14567 5.742453 CAGATGCATTACTTGATTGCTGTTC 59.258 40.000 0.00 0.00 35.78 3.18
5904 14568 5.393787 CCAGATGCATTACTTGATTGCTGTT 60.394 40.000 0.00 0.00 35.78 3.16
5905 14569 4.097437 CCAGATGCATTACTTGATTGCTGT 59.903 41.667 0.00 0.00 35.78 4.40
5906 14570 4.337274 TCCAGATGCATTACTTGATTGCTG 59.663 41.667 0.00 0.00 35.78 4.41
5907 14571 4.529897 TCCAGATGCATTACTTGATTGCT 58.470 39.130 0.00 0.00 35.78 3.91
5908 14572 4.577693 TCTCCAGATGCATTACTTGATTGC 59.422 41.667 0.00 0.00 35.41 3.56
5909 14573 6.688637 TTCTCCAGATGCATTACTTGATTG 57.311 37.500 0.00 0.00 0.00 2.67
5910 14574 6.489361 GGATTCTCCAGATGCATTACTTGATT 59.511 38.462 0.00 0.00 36.28 2.57
5911 14575 6.002704 GGATTCTCCAGATGCATTACTTGAT 58.997 40.000 0.00 0.00 36.28 2.57
5960 14626 3.726517 CCGGCCAGTTGAGTTGCG 61.727 66.667 2.24 0.00 0.00 4.85
6090 14767 4.250305 AACCCAGCAAGACGGCGT 62.250 61.111 14.65 14.65 39.27 5.68
6092 14769 4.043200 GCAACCCAGCAAGACGGC 62.043 66.667 0.00 0.00 0.00 5.68
6191 14869 4.582701 TTGCCACCACAAGAGTTAAATG 57.417 40.909 0.00 0.00 0.00 2.32
6226 14908 5.525378 CAGAGCCGAGCTTACTTCAATTATT 59.475 40.000 0.00 0.00 39.88 1.40
6242 15353 3.695606 GTCCCAGTGCAGAGCCGA 61.696 66.667 0.00 0.00 0.00 5.54
6339 15767 5.440234 TCGAGAGAAATAGGTGATACAGC 57.560 43.478 0.00 0.00 37.03 4.40
6440 15875 3.032459 GTTAGCTAGGCTTGGAGTACCT 58.968 50.000 0.00 0.00 40.44 3.08
6444 15879 2.420687 GCATGTTAGCTAGGCTTGGAGT 60.421 50.000 0.00 0.00 40.44 3.85
6448 15883 0.940126 CGGCATGTTAGCTAGGCTTG 59.060 55.000 0.00 0.00 40.44 4.01
6462 15897 0.322456 TTTAAGCTCAGGCACGGCAT 60.322 50.000 0.00 0.00 41.70 4.40
6528 15994 6.869913 AGTTGAAATTACAAGAACATGCATGG 59.130 34.615 29.41 14.24 0.00 3.66
6578 17688 3.118075 TCATCAAGTTTGGGTGTCTGACA 60.118 43.478 6.36 6.36 0.00 3.58
6580 17690 3.855255 TCATCAAGTTTGGGTGTCTGA 57.145 42.857 0.00 0.00 0.00 3.27
6581 17691 3.631686 TGTTCATCAAGTTTGGGTGTCTG 59.368 43.478 0.00 0.00 0.00 3.51
6583 17693 4.037923 ACATGTTCATCAAGTTTGGGTGTC 59.962 41.667 0.00 0.00 0.00 3.67
6663 17852 0.453793 AGAGGAAGCGAGATGTGACG 59.546 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.