AutoCloner

Multiple sequence alignment - TraesCS1A01G408300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G408300	chr1A	100.000	2621	0	0	1	2621	570264221	570266841	0.000000e+00	4841.0
1	TraesCS1A01G408300	chr1D	86.698	1932	170	35	730	2621	474753123	474755007	0.000000e+00	2063.0
2	TraesCS1A01G408300	chr1D	85.950	121	15	2	120	239	267598131	267598012	7.610000e-26	128.0
3	TraesCS1A01G408300	chr1D	87.387	111	11	2	1301	1408	474726098	474726208	9.850000e-25	124.0
4	TraesCS1A01G408300	chr1B	85.344	1931	179	50	768	2619	659988623	659990528	0.000000e+00	1903.0
5	TraesCS1A01G408300	chr1B	86.357	711	47	28	1085	1766	659997512	659998201	0.000000e+00	730.0
6	TraesCS1A01G408300	chr1B	95.390	282	13	0	451	732	637571426	637571707	1.430000e-122	449.0
7	TraesCS1A01G408300	chr1B	93.993	283	17	0	88	370	637570894	637571176	1.860000e-116	429.0
8	TraesCS1A01G408300	chr1B	95.652	92	4	0	1	92	637562240	637562331	5.840000e-32	148.0
9	TraesCS1A01G408300	chr1B	85.315	143	16	4	120	259	108455196	108455056	2.720000e-30	143.0
10	TraesCS1A01G408300	chr1B	85.593	118	13	3	1301	1415	659975305	659975421	1.270000e-23	121.0
11	TraesCS1A01G408300	chr7A	92.769	733	51	2	1	732	11420843	11420112	0.000000e+00	1059.0
12	TraesCS1A01G408300	chr7A	82.041	245	35	9	492	732	686320705	686320944	1.590000e-47	200.0
13	TraesCS1A01G408300	chr7A	79.054	148	29	2	120	266	59611279	59611425	1.660000e-17	100.0
14	TraesCS1A01G408300	chr7A	71.990	382	88	14	1891	2266	609581252	609580884	7.720000e-16	95.3
15	TraesCS1A01G408300	chr3B	87.775	728	54	15	1	728	41669533	41670225	0.000000e+00	819.0
16	TraesCS1A01G408300	chr3B	82.449	245	36	7	493	734	469771759	469771519	9.510000e-50	207.0
17	TraesCS1A01G408300	chr3B	92.174	115	9	0	1	115	606344773	606344659	2.090000e-36	163.0
18	TraesCS1A01G408300	chr3B	78.455	246	45	8	1972	2211	53578295	53578052	1.260000e-33	154.0
19	TraesCS1A01G408300	chr3B	78.455	246	43	10	1972	2211	2182287	2182046	4.520000e-33	152.0
20	TraesCS1A01G408300	chr3B	84.091	132	9	8	1293	1415	431989837	431989709	1.650000e-22	117.0
21	TraesCS1A01G408300	chr3D	75.769	813	139	30	1856	2621	519245122	519244321	8.920000e-95	357.0
22	TraesCS1A01G408300	chr5B	76.014	592	117	23	1891	2467	15257050	15256469	1.540000e-72	283.0
23	TraesCS1A01G408300	chr5B	76.866	268	46	11	2169	2426	541288176	541287915	1.270000e-28	137.0
24	TraesCS1A01G408300	chr7B	85.887	248	29	6	492	737	60478581	60478824	2.590000e-65	259.0
25	TraesCS1A01G408300	chr7B	80.916	131	19	3	419	545	295102615	295102743	5.970000e-17	99.0
26	TraesCS1A01G408300	chr6A	81.557	244	36	9	492	731	187761898	187762136	2.660000e-45	193.0
27	TraesCS1A01G408300	chr5A	79.211	279	50	8	2004	2276	656714849	656715125	1.240000e-43	187.0
28	TraesCS1A01G408300	chr5A	72.876	306	67	12	1968	2268	78178839	78179133	9.990000e-15	91.6
29	TraesCS1A01G408300	chr6B	82.710	214	30	7	494	703	72325123	72325333	1.600000e-42	183.0
30	TraesCS1A01G408300	chr6B	82.710	214	30	7	494	703	72327922	72328132	1.600000e-42	183.0
31	TraesCS1A01G408300	chr2B	75.000	364	72	18	1935	2288	453075926	453075572	1.620000e-32	150.0
32	TraesCS1A01G408300	chrUn	78.761	226	42	6	1972	2193	449434387	449434164	2.100000e-31	147.0
33	TraesCS1A01G408300	chr7D	76.596	282	54	12	2004	2276	631469676	631469954	7.560000e-31	145.0
34	TraesCS1A01G408300	chr7D	84.821	112	15	2	120	230	563541789	563541679	7.670000e-21	111.0
35	TraesCS1A01G408300	chr7D	83.471	121	18	2	120	239	601941670	601941789	7.670000e-21	111.0
36	TraesCS1A01G408300	chr2D	85.950	121	15	2	120	239	103149624	103149505	7.610000e-26	128.0
37	TraesCS1A01G408300	chr2D	79.348	92	13	5	2175	2262	140059656	140059745	2.820000e-05	60.2
38	TraesCS1A01G408300	chr3A	82.576	132	11	6	1293	1415	450303952	450303824	3.570000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G408300	chr1A	570264221	570266841	2620	False	4841	4841	100.0000	1	2621	1	chr1A.!!$F1	2620
1	TraesCS1A01G408300	chr1D	474753123	474755007	1884	False	2063	2063	86.6980	730	2621	1	chr1D.!!$F2	1891
2	TraesCS1A01G408300	chr1B	659988623	659990528	1905	False	1903	1903	85.3440	768	2619	1	chr1B.!!$F3	1851
3	TraesCS1A01G408300	chr1B	659997512	659998201	689	False	730	730	86.3570	1085	1766	1	chr1B.!!$F4	681
4	TraesCS1A01G408300	chr1B	637570894	637571707	813	False	439	449	94.6915	88	732	2	chr1B.!!$F5	644
5	TraesCS1A01G408300	chr7A	11420112	11420843	731	True	1059	1059	92.7690	1	732	1	chr7A.!!$R1	731
6	TraesCS1A01G408300	chr3B	41669533	41670225	692	False	819	819	87.7750	1	728	1	chr3B.!!$F1	727
7	TraesCS1A01G408300	chr3D	519244321	519245122	801	True	357	357	75.7690	1856	2621	1	chr3D.!!$R1	765
8	TraesCS1A01G408300	chr5B	15256469	15257050	581	True	283	283	76.0140	1891	2467	1	chr5B.!!$R1	576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
516	747	0.684535	TGACGAGAATGCCCTCAACA	59.315	50.0	0.0	0.0	32.86	3.33	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1844	2146	0.314935	CAGGTGTTCCATGTGGTTGC	59.685	55.0	0.0	0.0	36.34	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	1.613630	ACGCTCCTCCCCAATCTGT	60.614	57.895	0.00	0.00	0.00	3.41
67	68	2.348998	CGCTCCTTCCTTGCCTGT	59.651	61.111	0.00	0.00	0.00	4.00
115	116	2.894257	TTCCTCATGGCTGTGCGGT	61.894	57.895	0.00	0.00	0.00	5.68
199	200	1.388065	CGTGGGGCGAGAGAGAAGAT	61.388	60.000	0.00	0.00	44.77	2.40
212	213	2.788807	AGAGAAGATGGAGAGGAGCCTA	59.211	50.000	0.00	0.00	0.00	3.93
273	274	4.426313	GCCCGAAACCAGGAGGGG	62.426	72.222	13.39	9.40	43.95	4.79
300	301	3.311110	GGAGCACCTCCCGTGTGA	61.311	66.667	0.00	0.00	44.36	3.58
314	315	2.047655	GTGAACGCGGGGATGACA	60.048	61.111	12.47	0.00	0.00	3.58
324	325	2.143419	GGGATGACAGCGGGGATCT	61.143	63.158	0.00	0.00	0.00	2.75
516	747	0.684535	TGACGAGAATGCCCTCAACA	59.315	50.000	0.00	0.00	32.86	3.33
591	822	1.052124	AATATCGGGCGGGTGGAGAA	61.052	55.000	0.00	0.00	0.00	2.87
738	969	4.641989	ACTCTAACAATGGGATGCATTCAC	59.358	41.667	7.43	0.00	0.00	3.18
761	992	1.224592	GACCCTCTCCCCGTACGTA	59.775	63.158	15.21	0.00	0.00	3.57
762	993	1.077429	ACCCTCTCCCCGTACGTAC	60.077	63.158	15.90	15.90	0.00	3.67
820	1051	4.364860	TCGTTGTCTCGATCAACTTTGAA	58.635	39.130	22.14	7.90	41.76	2.69
849	1081	1.004440	GAGCAAGAGTGGAAGGCGT	60.004	57.895	0.00	0.00	0.00	5.68
904	1140	2.125188	GAGGAGCAGCTGAGCACC	60.125	66.667	20.43	11.37	44.37	5.01
934	1170	2.176889	AGGACATGGCAGTACGTAGTT	58.823	47.619	0.00	0.00	37.78	2.24
979	1229	3.097614	AGAACCGGATGTTACAGTAGCT	58.902	45.455	9.46	0.00	37.29	3.32
1262	1515	4.090057	GCCGGCAAAGACGTGCTC	62.090	66.667	24.80	0.00	44.31	4.26
1430	1695	2.747855	CAGCCCTTCCAACTCCGC	60.748	66.667	0.00	0.00	0.00	5.54
1739	2028	4.835284	TGTATTATTGGTGACCTGAGCA	57.165	40.909	2.11	0.00	0.00	4.26
1801	2094	9.346725	GTGAATTTCATATGTTCCTTGAACTTC	57.653	33.333	1.78	7.58	42.39	3.01
1821	2114	5.532406	ACTTCATGCAGTACACTTTGTTCAT	59.468	36.000	0.00	0.00	0.00	2.57
1823	2116	6.000891	TCATGCAGTACACTTTGTTCATTC	57.999	37.500	0.00	0.00	0.00	2.67
1824	2117	5.764686	TCATGCAGTACACTTTGTTCATTCT	59.235	36.000	0.00	0.00	0.00	2.40
1825	2118	6.934083	TCATGCAGTACACTTTGTTCATTCTA	59.066	34.615	0.00	0.00	0.00	2.10
1826	2119	6.539649	TGCAGTACACTTTGTTCATTCTAC	57.460	37.500	0.00	0.00	0.00	2.59
1827	2120	6.288294	TGCAGTACACTTTGTTCATTCTACT	58.712	36.000	0.00	0.00	0.00	2.57
1828	2121	7.438564	TGCAGTACACTTTGTTCATTCTACTA	58.561	34.615	0.00	0.00	0.00	1.82
1829	2122	7.598869	TGCAGTACACTTTGTTCATTCTACTAG	59.401	37.037	0.00	0.00	0.00	2.57
1830	2123	7.599245	GCAGTACACTTTGTTCATTCTACTAGT	59.401	37.037	0.00	0.00	0.00	2.57
1853	2168	8.677148	AGTAAATTATAATCTCGCAACCACAT	57.323	30.769	0.00	0.00	0.00	3.21
1917	2244	7.639113	AAAGGAAACTAATGTCAACAACAGA	57.361	32.000	2.45	0.00	40.35	3.41
1922	2249	6.699575	AACTAATGTCAACAACAGAAGCTT	57.300	33.333	0.00	0.00	42.37	3.74
1978	2305	2.504274	GGAGTCGTCCCACCACACA	61.504	63.158	0.00	0.00	36.76	3.72
1979	2306	1.300697	GAGTCGTCCCACCACACAC	60.301	63.158	0.00	0.00	0.00	3.82
1989	2316	1.140052	CCACCACACACTCCAAGTACA	59.860	52.381	0.00	0.00	0.00	2.90
2009	2336	1.497223	CCGAAACGCCGTGTACCAAA	61.497	55.000	0.00	0.00	0.00	3.28
2035	2362	2.795121	CTTCAAGAAGGAATGCGACG	57.205	50.000	1.86	0.00	34.87	5.12
2053	2380	0.452184	CGATGACGACACTACTGCCT	59.548	55.000	0.00	0.00	42.66	4.75
2085	2412	1.227615	GGTTTTCCCCGACACACGA	60.228	57.895	0.00	0.00	45.77	4.35
2125	2452	0.179089	CATCTGACGCCCTTCAGGAG	60.179	60.000	0.00	0.00	42.95	3.69
2142	2469	1.453155	GAGTGAATGACGGCACCAAT	58.547	50.000	0.00	0.00	35.67	3.16
2220	2548	1.069204	CCACTACCCAGATGATCCGTG	59.931	57.143	0.00	0.00	0.00	4.94
2222	2550	1.343075	ACTACCCAGATGATCCGTGGT	60.343	52.381	4.00	4.00	0.00	4.16
2254	2583	4.682334	CCCACCCACCAGCATGCA	62.682	66.667	21.98	0.00	31.97	3.96
2276	2605	4.079446	CACGGTTTGGATGCCACT	57.921	55.556	0.00	0.00	30.78	4.00
2283	2612	0.971959	TTTGGATGCCACTCATGCCC	60.972	55.000	0.00	0.00	42.16	5.36
2340	2669	3.631250	GGAATATGGGAGTGCAAGGAAA	58.369	45.455	0.00	0.00	0.00	3.13
2341	2670	4.218312	GGAATATGGGAGTGCAAGGAAAT	58.782	43.478	0.00	0.00	0.00	2.17
2387	2716	1.529309	GAGGGAACTGCCTCCATCC	59.471	63.158	6.00	0.00	44.43	3.51
2448	2784	2.360350	CCACGGCAACAGGAGCAT	60.360	61.111	0.00	0.00	33.37	3.79
2450	2786	1.091771	CCACGGCAACAGGAGCATAG	61.092	60.000	0.00	0.00	33.37	2.23
2458	2794	1.277580	ACAGGAGCATAGCAGGCCTT	61.278	55.000	0.00	0.00	0.00	4.35
2490	2849	4.657408	TCCGCCACCATGCTGCAA	62.657	61.111	6.36	0.00	0.00	4.08
2497	2856	1.532316	ACCATGCTGCAACAAGCCT	60.532	52.632	6.36	0.00	44.83	4.58
2504	2863	1.859427	CTGCAACAAGCCTGCGACAT	61.859	55.000	0.00	0.00	44.83	3.06
2539	2898	0.613777	GAATCCCGACTCACCACCTT	59.386	55.000	0.00	0.00	0.00	3.50
2553	2913	1.307084	ACCTTCACCTCTAGGGGCC	60.307	63.158	9.18	0.00	38.88	5.80
2564	2924	0.979665	CTAGGGGCCACATCATCGAT	59.020	55.000	8.31	0.00	0.00	3.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	0.035820	GAATGGGTAGGTCAACGCCA	60.036	55.000	0.00	0.00	0.00	5.69
154	155	2.357517	CGCTTCTCGTTGGCCACT	60.358	61.111	3.88	0.00	0.00	4.00
191	192	1.575304	AGGCTCCTCTCCATCTTCTCT	59.425	52.381	0.00	0.00	0.00	3.10
199	200	0.260230	CTCTGGTAGGCTCCTCTCCA	59.740	60.000	0.00	10.71	0.00	3.86
212	213	2.060980	GGCTCCGATGGACTCTGGT	61.061	63.158	0.00	0.00	0.00	4.00
239	240	1.675641	GCTGGGCATCACCTTCGTT	60.676	57.895	0.00	0.00	39.10	3.85
273	274	4.475135	GGTGCTCCGCCTCTTCCC	62.475	72.222	0.00	0.00	0.00	3.97
306	307	2.143419	AGATCCCCGCTGTCATCCC	61.143	63.158	0.00	0.00	0.00	3.85
310	311	3.785859	GCCAGATCCCCGCTGTCA	61.786	66.667	0.00	0.00	0.00	3.58
362	363	2.644798	CCCATTCCCTTACCCTATCTGG	59.355	54.545	0.00	0.00	0.00	3.86
373	374	2.378634	CGCCTCCTCCCATTCCCTT	61.379	63.158	0.00	0.00	0.00	3.95
591	822	1.109609	GTCGGATCTTTACCCGGTCT	58.890	55.000	0.00	0.00	45.36	3.85
787	1018	2.718789	CGAGACAACGAACGCTGAAATG	60.719	50.000	4.67	0.00	35.09	2.32
820	1051	2.219325	CTCTTGCTCGGCCTTCGACT	62.219	60.000	0.00	0.00	43.74	4.18
849	1081	3.491276	CCGTGGGCATACTTATACGAACA	60.491	47.826	0.00	0.00	33.78	3.18
876	1112	0.455410	CTGCTCCTCTCAACTCGGAG	59.545	60.000	2.83	2.83	45.59	4.63
904	1140	0.317938	GCCATGTCCTAGTACGAGCG	60.318	60.000	0.00	0.00	0.00	5.03
994	1244	2.505982	GGCGCCTTCCATGCTCTA	59.494	61.111	22.15	0.00	0.00	2.43
1068	1318	4.392166	TAGAGCAGACCGGGGCCA	62.392	66.667	6.32	0.00	0.00	5.36
1072	1322	3.528370	CGGGTAGAGCAGACCGGG	61.528	72.222	6.32	0.00	42.48	5.73
1173	1423	4.116328	TCGACGAGCAGAAGCCGG	62.116	66.667	0.00	0.00	43.56	6.13
1200	1450	3.423162	CTCCGCTCCTGCTCCGAAG	62.423	68.421	0.00	0.00	36.97	3.79
1201	1451	3.452786	CTCCGCTCCTGCTCCGAA	61.453	66.667	0.00	0.00	36.97	4.30
1204	1454	4.527583	CTGCTCCGCTCCTGCTCC	62.528	72.222	0.00	0.00	36.97	4.70
1715	2004	6.894682	TGCTCAGGTCACCAATAATACAATA	58.105	36.000	0.00	0.00	0.00	1.90
1716	2005	5.754782	TGCTCAGGTCACCAATAATACAAT	58.245	37.500	0.00	0.00	0.00	2.71
1763	2052	8.364142	ACATATGAAATTCACCCGAAAAAGAAA	58.636	29.630	10.38	0.00	34.01	2.52
1766	2055	7.275560	GGAACATATGAAATTCACCCGAAAAAG	59.724	37.037	10.38	0.00	34.01	2.27
1771	2062	5.110814	AGGAACATATGAAATTCACCCGA	57.889	39.130	10.38	0.00	0.00	5.14
1801	2094	6.005583	AGAATGAACAAAGTGTACTGCATG	57.994	37.500	0.00	0.00	0.00	4.06
1825	2118	9.257651	GTGGTTGCGAGATTATAATTTACTAGT	57.742	33.333	0.00	0.00	0.00	2.57
1826	2119	9.256477	TGTGGTTGCGAGATTATAATTTACTAG	57.744	33.333	0.00	0.00	0.00	2.57
1827	2120	9.772973	ATGTGGTTGCGAGATTATAATTTACTA	57.227	29.630	0.00	0.00	0.00	1.82
1828	2121	8.559536	CATGTGGTTGCGAGATTATAATTTACT	58.440	33.333	0.00	0.00	0.00	2.24
1829	2122	7.803189	CCATGTGGTTGCGAGATTATAATTTAC	59.197	37.037	0.00	0.00	0.00	2.01
1830	2123	7.717436	TCCATGTGGTTGCGAGATTATAATTTA	59.283	33.333	0.00	0.00	36.34	1.40
1831	2124	6.545666	TCCATGTGGTTGCGAGATTATAATTT	59.454	34.615	0.00	0.00	36.34	1.82
1839	2141	1.271325	TGTTCCATGTGGTTGCGAGAT	60.271	47.619	0.00	0.00	36.34	2.75
1844	2146	0.314935	CAGGTGTTCCATGTGGTTGC	59.685	55.000	0.00	0.00	36.34	4.17
1853	2168	4.284550	GGCCCAGCAGGTGTTCCA	62.285	66.667	0.00	0.00	38.26	3.53
1869	2184	4.582701	TTAGGCTTGATGTGTTGTTTGG	57.417	40.909	0.00	0.00	0.00	3.28
1896	2211	5.915196	GCTTCTGTTGTTGACATTAGTTTCC	59.085	40.000	0.00	0.00	37.69	3.13
1922	2249	2.506217	GTCATCCGCGCTTCGTCA	60.506	61.111	5.56	0.00	36.19	4.35
1958	2285	2.987547	GTGGTGGGACGACTCCGA	60.988	66.667	0.00	0.00	37.46	4.55
1978	2305	1.870993	GCGTTTCGGTGTACTTGGAGT	60.871	52.381	0.00	0.00	0.00	3.85
1979	2306	0.788391	GCGTTTCGGTGTACTTGGAG	59.212	55.000	0.00	0.00	0.00	3.86
1989	2316	2.356194	GGTACACGGCGTTTCGGT	60.356	61.111	11.19	8.04	0.00	4.69
2009	2336	3.319122	GCATTCCTTCTTGAAGGTGTTGT	59.681	43.478	23.78	8.41	40.81	3.32
2035	2362	1.469940	CCAGGCAGTAGTGTCGTCATC	60.470	57.143	0.00	0.00	31.53	2.92
2053	2380	4.908534	GGGAAAACCCTAGGACATGTCCA	61.909	52.174	39.38	26.04	42.86	4.02
2082	2409	2.290705	CCCATTACCCACTTTCCTTCGT	60.291	50.000	0.00	0.00	0.00	3.85
2085	2412	3.658705	TGTACCCATTACCCACTTTCCTT	59.341	43.478	0.00	0.00	0.00	3.36
2125	2452	1.670811	CCTATTGGTGCCGTCATTCAC	59.329	52.381	0.00	0.00	0.00	3.18
2126	2453	2.016604	GCCTATTGGTGCCGTCATTCA	61.017	52.381	0.00	0.00	35.27	2.57
2220	2548	1.354368	TGGGAAACTGGATGGAAGACC	59.646	52.381	0.00	0.00	0.00	3.85
2222	2550	1.354368	GGTGGGAAACTGGATGGAAGA	59.646	52.381	0.00	0.00	0.00	2.87
2276	2605	2.037901	GATCTCAGTGAGAGGGCATGA	58.962	52.381	26.13	3.04	42.26	3.07
2283	2612	2.543445	GCGATGGTGATCTCAGTGAGAG	60.543	54.545	26.13	12.22	42.26	3.20
2340	2669	2.114625	CGATGCTGCCATCCCCAT	59.885	61.111	0.00	0.00	44.00	4.00
2341	2670	3.089217	TCGATGCTGCCATCCCCA	61.089	61.111	0.00	0.00	44.00	4.96
2431	2767	1.078497	TATGCTCCTGTTGCCGTGG	60.078	57.895	0.00	0.00	0.00	4.94
2433	2769	1.450312	GCTATGCTCCTGTTGCCGT	60.450	57.895	0.00	0.00	0.00	5.68
2466	2802	2.676471	ATGGTGGCGGAGGTTTGC	60.676	61.111	0.00	0.00	0.00	3.68
2479	2838	1.532316	AGGCTTGTTGCAGCATGGT	60.532	52.632	16.36	0.00	45.15	3.55
2504	2863	0.907704	ATTCTGGGTAGTGGTGGCGA	60.908	55.000	0.00	0.00	0.00	5.54
2514	2873	1.481871	GTGAGTCGGGATTCTGGGTA	58.518	55.000	0.00	0.00	0.00	3.69
2539	2898	0.691078	GATGTGGCCCCTAGAGGTGA	60.691	60.000	0.00	0.00	0.00	4.02
2553	2913	3.674281	GCAGCTCTTCTATCGATGATGTG	59.326	47.826	8.54	7.94	0.00	3.21
2564	2924	2.725312	CGGGCTGGCAGCTCTTCTA	61.725	63.158	34.42	0.00	40.30	2.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.