Multiple sequence alignment - TraesCS1A01G408100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G408100 chr1A 100.000 2522 0 0 1 2522 570247321 570249842 0.000000e+00 4658.0
1 TraesCS1A01G408100 chr1D 86.418 2010 136 63 183 2083 474719277 474721258 0.000000e+00 2073.0
2 TraesCS1A01G408100 chr1D 84.298 121 6 3 1 121 474718800 474718907 3.430000e-19 106.0
3 TraesCS1A01G408100 chr1B 82.588 2056 166 90 76 1981 659947957 659949970 0.000000e+00 1637.0
4 TraesCS1A01G408100 chr1B 86.792 212 8 4 345 536 659913143 659913354 4.220000e-53 219.0
5 TraesCS1A01G408100 chr1B 95.556 45 2 0 182 226 659912983 659913027 3.480000e-09 73.1
6 TraesCS1A01G408100 chr3D 86.250 80 8 2 1724 1800 87339617 87339538 1.610000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G408100 chr1A 570247321 570249842 2521 False 4658.0 4658 100.000 1 2522 1 chr1A.!!$F1 2521
1 TraesCS1A01G408100 chr1D 474718800 474721258 2458 False 1089.5 2073 85.358 1 2083 2 chr1D.!!$F1 2082
2 TraesCS1A01G408100 chr1B 659947957 659949970 2013 False 1637.0 1637 82.588 76 1981 1 chr1B.!!$F1 1905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 891 0.03254 CAGGTTGCAGTTTTGGAGCC 59.967 55.0 0.0 0.0 44.64 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2902 0.031616 CTGGCTAGGAGAAGGGGAGT 60.032 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.284234 TCATGGTGTTCTCTCTCATGTTGA 59.716 41.667 0.00 0.00 37.20 3.18
35 36 5.026121 TCTCTCATGTTGACCTACCAAGAT 58.974 41.667 0.00 0.00 31.24 2.40
36 37 5.127845 TCTCTCATGTTGACCTACCAAGATC 59.872 44.000 0.00 0.00 29.00 2.75
37 38 4.777366 TCTCATGTTGACCTACCAAGATCA 59.223 41.667 0.00 0.00 29.00 2.92
38 39 5.426509 TCTCATGTTGACCTACCAAGATCAT 59.573 40.000 0.00 0.00 29.00 2.45
39 40 5.430886 TCATGTTGACCTACCAAGATCATG 58.569 41.667 0.00 0.00 33.23 3.07
40 41 4.220693 TGTTGACCTACCAAGATCATGG 57.779 45.455 15.39 15.39 46.38 3.66
87 88 6.645700 TTTGAGTTTCACAATGTTCTTTGC 57.354 33.333 0.00 0.00 0.00 3.68
91 92 2.798976 TCACAATGTTCTTTGCCAGC 57.201 45.000 0.00 0.00 0.00 4.85
126 413 5.652994 TTTTTCCGAATTTATCCCCACTG 57.347 39.130 0.00 0.00 0.00 3.66
144 431 5.478407 CCACTGGGTTGGTAAATTTTGATC 58.522 41.667 0.00 0.00 0.00 2.92
150 437 5.279056 GGGTTGGTAAATTTTGATCGTTGGA 60.279 40.000 0.00 0.00 0.00 3.53
175 462 9.419297 GAAAACTAAAACAAAAAGGAGTTCAGT 57.581 29.630 0.00 0.00 0.00 3.41
177 464 9.850628 AAACTAAAACAAAAAGGAGTTCAGTAC 57.149 29.630 0.00 0.00 0.00 2.73
178 465 8.570068 ACTAAAACAAAAAGGAGTTCAGTACA 57.430 30.769 0.00 0.00 0.00 2.90
179 466 9.185680 ACTAAAACAAAAAGGAGTTCAGTACAT 57.814 29.630 0.00 0.00 0.00 2.29
180 467 9.450807 CTAAAACAAAAAGGAGTTCAGTACATG 57.549 33.333 0.00 0.00 0.00 3.21
206 514 3.191791 TCCATCATTGCACACTTGTCATG 59.808 43.478 0.00 0.00 0.00 3.07
248 563 3.070302 ACTCTGAACCTGTTCTTCACTCC 59.930 47.826 11.03 0.00 40.14 3.85
335 660 2.278206 CGATGCGACGTCCTGGAG 60.278 66.667 10.58 0.00 0.00 3.86
492 821 2.125269 CACGGCCCTTAACTCCGG 60.125 66.667 0.00 0.00 46.78 5.14
560 891 0.032540 CAGGTTGCAGTTTTGGAGCC 59.967 55.000 0.00 0.00 44.64 4.70
610 956 1.440060 CTATCTTGTACCCGCGCCA 59.560 57.895 0.00 0.00 0.00 5.69
652 1002 4.085055 CCTGCGTACGTATCATCATCAAAC 60.085 45.833 17.90 0.00 0.00 2.93
655 1005 5.005299 TGCGTACGTATCATCATCAAACTTG 59.995 40.000 17.90 0.00 0.00 3.16
680 1030 4.194720 ACGCCCACGATCGAGAGC 62.195 66.667 24.34 16.02 43.93 4.09
683 1033 3.209812 CCCACGATCGAGAGCGGA 61.210 66.667 24.34 0.00 45.50 5.54
699 1067 3.143675 GGAGTGAATTCTCGCTGCA 57.856 52.632 7.05 0.00 46.59 4.41
711 1079 1.059994 CGCTGCACGCTTTGATCTC 59.940 57.895 0.00 0.00 36.13 2.75
714 1082 1.465354 GCTGCACGCTTTGATCTCTTG 60.465 52.381 0.00 0.00 35.14 3.02
715 1083 0.518636 TGCACGCTTTGATCTCTTGC 59.481 50.000 0.00 0.00 0.00 4.01
716 1084 0.518636 GCACGCTTTGATCTCTTGCA 59.481 50.000 0.00 0.00 0.00 4.08
717 1085 1.465354 GCACGCTTTGATCTCTTGCAG 60.465 52.381 0.00 0.00 0.00 4.41
718 1086 0.801251 ACGCTTTGATCTCTTGCAGC 59.199 50.000 0.00 0.00 0.00 5.25
719 1087 1.085091 CGCTTTGATCTCTTGCAGCT 58.915 50.000 0.00 0.00 0.00 4.24
746 1114 2.581354 GCAGTGAGCCTGACGGAT 59.419 61.111 0.00 0.00 44.49 4.18
760 1128 2.039746 TGACGGATGTGGGAGTGAATTT 59.960 45.455 0.00 0.00 0.00 1.82
767 1135 0.776810 TGGGAGTGAATTTCTGGCCA 59.223 50.000 4.71 4.71 0.00 5.36
776 1144 4.150451 GTGAATTTCTGGCCATTTTTCACG 59.850 41.667 23.60 6.62 34.24 4.35
827 1204 4.973055 TTTACTGGGCGCACGCGT 62.973 61.111 5.58 5.58 43.06 6.01
850 1232 2.357034 CCGTCCCGTCCAACTGTG 60.357 66.667 0.00 0.00 0.00 3.66
863 1245 1.771783 AACTGTGTACCCGAACCCCC 61.772 60.000 0.00 0.00 0.00 5.40
939 1340 1.697082 GGTTCCCCAGGCTAGCTACC 61.697 65.000 15.72 7.28 0.00 3.18
942 1343 2.444256 CCCCAGGCTAGCTACCACC 61.444 68.421 15.72 5.19 0.00 4.61
943 1344 1.383248 CCCAGGCTAGCTACCACCT 60.383 63.158 15.72 7.13 0.00 4.00
944 1345 0.105658 CCCAGGCTAGCTACCACCTA 60.106 60.000 15.72 0.00 0.00 3.08
955 1375 1.338337 CTACCACCTACTGGCTGATCG 59.662 57.143 0.00 0.00 45.32 3.69
1067 1497 2.127232 GCGACGCAGGTTTGAAGC 60.127 61.111 16.42 0.00 0.00 3.86
1555 2016 2.515523 GATCCAGCGCCTGCATGT 60.516 61.111 2.29 0.00 46.23 3.21
1597 2058 2.266055 GCGGGTCAACTCCAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
1602 2063 1.002544 GGGTCAACTCCAGAGGTCTTG 59.997 57.143 0.00 0.00 0.00 3.02
1604 2065 2.289133 GGTCAACTCCAGAGGTCTTGTC 60.289 54.545 0.00 0.00 0.00 3.18
1606 2067 1.341531 CAACTCCAGAGGTCTTGTCGT 59.658 52.381 0.00 0.00 0.00 4.34
1610 2071 0.179161 CCAGAGGTCTTGTCGTAGCG 60.179 60.000 0.00 0.00 0.00 4.26
1611 2072 0.798771 CAGAGGTCTTGTCGTAGCGC 60.799 60.000 0.00 0.00 0.00 5.92
1614 2075 1.080705 GGTCTTGTCGTAGCGCAGT 60.081 57.895 11.47 0.00 0.00 4.40
1617 2078 0.179171 TCTTGTCGTAGCGCAGTAGC 60.179 55.000 11.47 0.00 37.42 3.58
1623 2084 1.134530 CGTAGCGCAGTAGCAGTGAC 61.135 60.000 11.47 0.00 42.27 3.67
1737 2211 7.279536 TCAGAGCTGATTAGAATTGACATGTTC 59.720 37.037 0.00 0.00 34.14 3.18
1738 2212 6.541641 AGAGCTGATTAGAATTGACATGTTCC 59.458 38.462 0.00 0.00 0.00 3.62
1754 2238 3.420893 TGTTCCCTTCATTTGCCTACTG 58.579 45.455 0.00 0.00 0.00 2.74
1802 2286 0.305313 GCACGTGTTGGCTTCGTTTA 59.695 50.000 18.38 0.00 35.62 2.01
1813 2297 3.559655 TGGCTTCGTTTATCATGGAATCG 59.440 43.478 0.00 0.00 0.00 3.34
1826 2310 3.625649 TGGAATCGACATCATGTTCCA 57.374 42.857 9.74 9.74 44.30 3.53
1856 2340 5.468540 ACTTCTTACATTTTCCTTTGGCC 57.531 39.130 0.00 0.00 0.00 5.36
1941 2446 9.535878 GTTATGGTTCTCTTACTTTCTATCTGG 57.464 37.037 0.00 0.00 0.00 3.86
1964 2470 7.872138 TGGAGAAAAAGTATTGATATGGTCCT 58.128 34.615 0.00 0.00 0.00 3.85
1966 2472 8.841300 GGAGAAAAAGTATTGATATGGTCCTTC 58.159 37.037 0.00 0.00 0.00 3.46
1974 2480 3.804036 TGATATGGTCCTTCGCGAAAAT 58.196 40.909 23.54 13.12 0.00 1.82
1982 2490 5.086727 GGTCCTTCGCGAAAATAGAAAAAG 58.913 41.667 23.54 6.57 0.00 2.27
1989 2497 6.674066 TCGCGAAAATAGAAAAAGGAAATGT 58.326 32.000 6.20 0.00 0.00 2.71
1991 2499 7.114247 TCGCGAAAATAGAAAAAGGAAATGTTG 59.886 33.333 6.20 0.00 0.00 3.33
2002 2510 8.970691 AAAAAGGAAATGTTGATGATAACTCG 57.029 30.769 0.00 0.00 0.00 4.18
2072 2586 9.274065 CATCTAACGTTAGGTTTTAAGCAATTC 57.726 33.333 29.87 0.00 40.09 2.17
2101 2615 3.853330 CGCGTTGGCCGTCAGATG 61.853 66.667 0.00 0.00 39.32 2.90
2102 2616 3.499737 GCGTTGGCCGTCAGATGG 61.500 66.667 3.98 3.98 39.32 3.51
2103 2617 2.264480 CGTTGGCCGTCAGATGGA 59.736 61.111 13.47 0.00 0.00 3.41
2104 2618 1.811266 CGTTGGCCGTCAGATGGAG 60.811 63.158 13.47 0.00 0.00 3.86
2105 2619 2.109126 GTTGGCCGTCAGATGGAGC 61.109 63.158 13.47 0.00 0.00 4.70
2106 2620 2.592032 TTGGCCGTCAGATGGAGCA 61.592 57.895 13.47 0.00 0.00 4.26
2107 2621 2.512515 GGCCGTCAGATGGAGCAC 60.513 66.667 13.47 0.00 0.00 4.40
2108 2622 2.265739 GCCGTCAGATGGAGCACA 59.734 61.111 13.47 0.00 0.00 4.57
2109 2623 2.103042 GCCGTCAGATGGAGCACAC 61.103 63.158 13.47 0.00 0.00 3.82
2110 2624 1.807165 CCGTCAGATGGAGCACACG 60.807 63.158 1.83 0.00 0.00 4.49
2111 2625 1.080501 CGTCAGATGGAGCACACGT 60.081 57.895 0.00 0.00 0.00 4.49
2112 2626 1.073216 CGTCAGATGGAGCACACGTC 61.073 60.000 0.00 0.00 0.00 4.34
2113 2627 0.244994 GTCAGATGGAGCACACGTCT 59.755 55.000 0.00 0.00 34.65 4.18
2114 2628 1.472878 GTCAGATGGAGCACACGTCTA 59.527 52.381 0.00 0.00 33.12 2.59
2115 2629 2.094700 GTCAGATGGAGCACACGTCTAA 60.095 50.000 0.00 0.00 33.12 2.10
2116 2630 2.560981 TCAGATGGAGCACACGTCTAAA 59.439 45.455 0.00 0.00 33.12 1.85
2117 2631 3.195610 TCAGATGGAGCACACGTCTAAAT 59.804 43.478 0.00 0.00 33.12 1.40
2118 2632 3.308053 CAGATGGAGCACACGTCTAAATG 59.692 47.826 0.00 0.00 33.12 2.32
2119 2633 2.831685 TGGAGCACACGTCTAAATGT 57.168 45.000 0.00 0.00 0.00 2.71
2149 2663 7.894376 AAATATTGCACATCAAAGTTCCAAG 57.106 32.000 0.00 0.00 38.34 3.61
2150 2664 4.942761 ATTGCACATCAAAGTTCCAAGT 57.057 36.364 0.00 0.00 38.34 3.16
2151 2665 3.988379 TGCACATCAAAGTTCCAAGTC 57.012 42.857 0.00 0.00 0.00 3.01
2152 2666 3.286353 TGCACATCAAAGTTCCAAGTCA 58.714 40.909 0.00 0.00 0.00 3.41
2153 2667 3.890756 TGCACATCAAAGTTCCAAGTCAT 59.109 39.130 0.00 0.00 0.00 3.06
2154 2668 4.341806 TGCACATCAAAGTTCCAAGTCATT 59.658 37.500 0.00 0.00 0.00 2.57
2155 2669 4.682860 GCACATCAAAGTTCCAAGTCATTG 59.317 41.667 0.00 0.00 36.09 2.82
2156 2670 5.507817 GCACATCAAAGTTCCAAGTCATTGA 60.508 40.000 0.00 0.00 38.83 2.57
2157 2671 6.684686 CACATCAAAGTTCCAAGTCATTGAT 58.315 36.000 0.00 0.00 38.83 2.57
2158 2672 6.805271 CACATCAAAGTTCCAAGTCATTGATC 59.195 38.462 0.00 0.00 38.83 2.92
2159 2673 5.611796 TCAAAGTTCCAAGTCATTGATCG 57.388 39.130 0.00 0.00 38.83 3.69
2160 2674 5.063204 TCAAAGTTCCAAGTCATTGATCGT 58.937 37.500 0.00 0.00 38.83 3.73
2161 2675 6.227522 TCAAAGTTCCAAGTCATTGATCGTA 58.772 36.000 0.00 0.00 38.83 3.43
2162 2676 6.147164 TCAAAGTTCCAAGTCATTGATCGTAC 59.853 38.462 0.00 0.00 38.83 3.67
2163 2677 4.174009 AGTTCCAAGTCATTGATCGTACG 58.826 43.478 9.53 9.53 38.83 3.67
2164 2678 2.536365 TCCAAGTCATTGATCGTACGC 58.464 47.619 11.24 0.00 38.83 4.42
2165 2679 1.255342 CCAAGTCATTGATCGTACGCG 59.745 52.381 11.24 3.53 38.83 6.01
2166 2680 1.255342 CAAGTCATTGATCGTACGCGG 59.745 52.381 12.47 0.00 38.83 6.46
2167 2681 0.736636 AGTCATTGATCGTACGCGGA 59.263 50.000 12.47 0.00 38.89 5.54
2168 2682 1.121240 GTCATTGATCGTACGCGGAG 58.879 55.000 12.47 0.36 38.89 4.63
2169 2683 1.018910 TCATTGATCGTACGCGGAGA 58.981 50.000 12.47 7.01 38.89 3.71
2170 2684 1.607148 TCATTGATCGTACGCGGAGAT 59.393 47.619 12.47 12.11 38.89 2.75
2171 2685 2.034179 TCATTGATCGTACGCGGAGATT 59.966 45.455 12.47 0.00 38.89 2.40
2172 2686 2.115348 TTGATCGTACGCGGAGATTC 57.885 50.000 12.47 2.10 38.89 2.52
2173 2687 1.018910 TGATCGTACGCGGAGATTCA 58.981 50.000 12.47 5.07 38.89 2.57
2174 2688 1.607148 TGATCGTACGCGGAGATTCAT 59.393 47.619 12.47 0.00 38.89 2.57
2175 2689 1.979469 GATCGTACGCGGAGATTCATG 59.021 52.381 12.47 0.00 38.89 3.07
2176 2690 0.736636 TCGTACGCGGAGATTCATGT 59.263 50.000 12.47 0.00 38.89 3.21
2177 2691 0.846401 CGTACGCGGAGATTCATGTG 59.154 55.000 12.47 0.00 0.00 3.21
2178 2692 1.209128 GTACGCGGAGATTCATGTGG 58.791 55.000 12.47 0.00 0.00 4.17
2179 2693 1.107945 TACGCGGAGATTCATGTGGA 58.892 50.000 12.47 0.00 0.00 4.02
2180 2694 0.465705 ACGCGGAGATTCATGTGGAT 59.534 50.000 12.47 0.00 0.00 3.41
2181 2695 1.686587 ACGCGGAGATTCATGTGGATA 59.313 47.619 12.47 0.00 0.00 2.59
2182 2696 2.300152 ACGCGGAGATTCATGTGGATAT 59.700 45.455 12.47 0.00 0.00 1.63
2183 2697 3.244215 ACGCGGAGATTCATGTGGATATT 60.244 43.478 12.47 0.00 0.00 1.28
2184 2698 3.748048 CGCGGAGATTCATGTGGATATTT 59.252 43.478 0.00 0.00 0.00 1.40
2185 2699 4.214119 CGCGGAGATTCATGTGGATATTTT 59.786 41.667 0.00 0.00 0.00 1.82
2186 2700 5.615544 CGCGGAGATTCATGTGGATATTTTC 60.616 44.000 0.00 0.00 0.00 2.29
2187 2701 5.335191 GCGGAGATTCATGTGGATATTTTCC 60.335 44.000 0.00 0.00 45.69 3.13
2188 2702 6.000219 CGGAGATTCATGTGGATATTTTCCT 59.000 40.000 0.00 0.00 45.68 3.36
2189 2703 6.488006 CGGAGATTCATGTGGATATTTTCCTT 59.512 38.462 0.00 0.00 45.68 3.36
2190 2704 7.013655 CGGAGATTCATGTGGATATTTTCCTTT 59.986 37.037 0.00 0.00 45.68 3.11
2191 2705 8.699130 GGAGATTCATGTGGATATTTTCCTTTT 58.301 33.333 0.00 0.00 45.68 2.27
2194 2708 9.317936 GATTCATGTGGATATTTTCCTTTTTCC 57.682 33.333 0.00 0.00 45.68 3.13
2195 2709 8.434589 TTCATGTGGATATTTTCCTTTTTCCT 57.565 30.769 0.00 0.00 45.68 3.36
2196 2710 8.434589 TCATGTGGATATTTTCCTTTTTCCTT 57.565 30.769 0.00 0.00 45.68 3.36
2197 2711 8.531146 TCATGTGGATATTTTCCTTTTTCCTTC 58.469 33.333 0.00 0.00 45.68 3.46
2198 2712 8.534496 CATGTGGATATTTTCCTTTTTCCTTCT 58.466 33.333 0.00 0.00 45.68 2.85
2199 2713 8.491045 TGTGGATATTTTCCTTTTTCCTTCTT 57.509 30.769 0.00 0.00 45.68 2.52
2200 2714 8.585018 TGTGGATATTTTCCTTTTTCCTTCTTC 58.415 33.333 0.00 0.00 45.68 2.87
2201 2715 8.807118 GTGGATATTTTCCTTTTTCCTTCTTCT 58.193 33.333 0.00 0.00 45.68 2.85
2202 2716 9.379770 TGGATATTTTCCTTTTTCCTTCTTCTT 57.620 29.630 0.00 0.00 45.68 2.52
2209 2723 9.653287 TTTCCTTTTTCCTTCTTCTTTTTCTTC 57.347 29.630 0.00 0.00 0.00 2.87
2210 2724 8.595362 TCCTTTTTCCTTCTTCTTTTTCTTCT 57.405 30.769 0.00 0.00 0.00 2.85
2211 2725 9.035890 TCCTTTTTCCTTCTTCTTTTTCTTCTT 57.964 29.630 0.00 0.00 0.00 2.52
2214 2728 9.783256 TTTTTCCTTCTTCTTTTTCTTCTTACG 57.217 29.630 0.00 0.00 0.00 3.18
2215 2729 6.541111 TCCTTCTTCTTTTTCTTCTTACGC 57.459 37.500 0.00 0.00 0.00 4.42
2216 2730 6.289064 TCCTTCTTCTTTTTCTTCTTACGCT 58.711 36.000 0.00 0.00 0.00 5.07
2217 2731 6.766467 TCCTTCTTCTTTTTCTTCTTACGCTT 59.234 34.615 0.00 0.00 0.00 4.68
2218 2732 6.853362 CCTTCTTCTTTTTCTTCTTACGCTTG 59.147 38.462 0.00 0.00 0.00 4.01
2219 2733 7.254795 CCTTCTTCTTTTTCTTCTTACGCTTGA 60.255 37.037 0.00 0.00 0.00 3.02
2220 2734 7.730364 TCTTCTTTTTCTTCTTACGCTTGAT 57.270 32.000 0.00 0.00 0.00 2.57
2221 2735 8.154649 TCTTCTTTTTCTTCTTACGCTTGATT 57.845 30.769 0.00 0.00 0.00 2.57
2222 2736 8.070171 TCTTCTTTTTCTTCTTACGCTTGATTG 58.930 33.333 0.00 0.00 0.00 2.67
2223 2737 7.490962 TCTTTTTCTTCTTACGCTTGATTGA 57.509 32.000 0.00 0.00 0.00 2.57
2224 2738 7.925993 TCTTTTTCTTCTTACGCTTGATTGAA 58.074 30.769 0.00 0.00 0.00 2.69
2225 2739 8.567948 TCTTTTTCTTCTTACGCTTGATTGAAT 58.432 29.630 0.00 0.00 0.00 2.57
2226 2740 8.506140 TTTTTCTTCTTACGCTTGATTGAATG 57.494 30.769 0.00 0.00 0.00 2.67
2227 2741 7.433708 TTTCTTCTTACGCTTGATTGAATGA 57.566 32.000 0.00 0.00 0.00 2.57
2228 2742 6.408858 TCTTCTTACGCTTGATTGAATGAC 57.591 37.500 0.00 0.00 0.00 3.06
2229 2743 6.166279 TCTTCTTACGCTTGATTGAATGACT 58.834 36.000 0.00 0.00 0.00 3.41
2230 2744 6.650807 TCTTCTTACGCTTGATTGAATGACTT 59.349 34.615 0.00 0.00 0.00 3.01
2231 2745 6.169419 TCTTACGCTTGATTGAATGACTTG 57.831 37.500 0.00 0.00 0.00 3.16
2232 2746 3.837213 ACGCTTGATTGAATGACTTGG 57.163 42.857 0.00 0.00 0.00 3.61
2233 2747 3.411446 ACGCTTGATTGAATGACTTGGA 58.589 40.909 0.00 0.00 0.00 3.53
2234 2748 4.012374 ACGCTTGATTGAATGACTTGGAT 58.988 39.130 0.00 0.00 0.00 3.41
2235 2749 4.142534 ACGCTTGATTGAATGACTTGGATG 60.143 41.667 0.00 0.00 0.00 3.51
2236 2750 4.142534 CGCTTGATTGAATGACTTGGATGT 60.143 41.667 0.00 0.00 0.00 3.06
2237 2751 5.100259 GCTTGATTGAATGACTTGGATGTG 58.900 41.667 0.00 0.00 0.00 3.21
2238 2752 5.336213 GCTTGATTGAATGACTTGGATGTGT 60.336 40.000 0.00 0.00 0.00 3.72
2239 2753 6.127925 GCTTGATTGAATGACTTGGATGTGTA 60.128 38.462 0.00 0.00 0.00 2.90
2240 2754 7.575532 GCTTGATTGAATGACTTGGATGTGTAA 60.576 37.037 0.00 0.00 0.00 2.41
2241 2755 7.943079 TGATTGAATGACTTGGATGTGTAAT 57.057 32.000 0.00 0.00 0.00 1.89
2242 2756 9.460019 TTGATTGAATGACTTGGATGTGTAATA 57.540 29.630 0.00 0.00 0.00 0.98
2243 2757 9.460019 TGATTGAATGACTTGGATGTGTAATAA 57.540 29.630 0.00 0.00 0.00 1.40
2244 2758 9.722056 GATTGAATGACTTGGATGTGTAATAAC 57.278 33.333 0.00 0.00 0.00 1.89
2245 2759 8.862325 TTGAATGACTTGGATGTGTAATAACT 57.138 30.769 0.00 0.00 0.00 2.24
2246 2760 9.952030 TTGAATGACTTGGATGTGTAATAACTA 57.048 29.630 0.00 0.00 0.00 2.24
2247 2761 9.599866 TGAATGACTTGGATGTGTAATAACTAG 57.400 33.333 0.00 0.00 0.00 2.57
2248 2762 9.817809 GAATGACTTGGATGTGTAATAACTAGA 57.182 33.333 0.00 0.00 0.00 2.43
2253 2767 9.227777 ACTTGGATGTGTAATAACTAGAAAACC 57.772 33.333 0.00 0.00 0.00 3.27
2254 2768 8.570068 TTGGATGTGTAATAACTAGAAAACCC 57.430 34.615 0.00 0.00 0.00 4.11
2255 2769 7.924541 TGGATGTGTAATAACTAGAAAACCCT 58.075 34.615 0.00 0.00 0.00 4.34
2256 2770 8.387813 TGGATGTGTAATAACTAGAAAACCCTT 58.612 33.333 0.00 0.00 0.00 3.95
2257 2771 9.895138 GGATGTGTAATAACTAGAAAACCCTTA 57.105 33.333 0.00 0.00 0.00 2.69
2268 2782 9.736414 AACTAGAAAACCCTTACTTAATTCCTC 57.264 33.333 0.00 0.00 0.00 3.71
2269 2783 9.113797 ACTAGAAAACCCTTACTTAATTCCTCT 57.886 33.333 0.00 0.00 0.00 3.69
2270 2784 9.961264 CTAGAAAACCCTTACTTAATTCCTCTT 57.039 33.333 0.00 0.00 0.00 2.85
2274 2788 9.696572 AAAACCCTTACTTAATTCCTCTTATCC 57.303 33.333 0.00 0.00 0.00 2.59
2275 2789 8.640033 AACCCTTACTTAATTCCTCTTATCCT 57.360 34.615 0.00 0.00 0.00 3.24
2276 2790 9.739737 AACCCTTACTTAATTCCTCTTATCCTA 57.260 33.333 0.00 0.00 0.00 2.94
2277 2791 9.915564 ACCCTTACTTAATTCCTCTTATCCTAT 57.084 33.333 0.00 0.00 0.00 2.57
2297 2811 2.046217 GGACTTTCCCCACTCGCC 60.046 66.667 0.00 0.00 0.00 5.54
2298 2812 2.046217 GACTTTCCCCACTCGCCC 60.046 66.667 0.00 0.00 0.00 6.13
2299 2813 2.852075 ACTTTCCCCACTCGCCCA 60.852 61.111 0.00 0.00 0.00 5.36
2300 2814 2.198304 GACTTTCCCCACTCGCCCAT 62.198 60.000 0.00 0.00 0.00 4.00
2301 2815 1.000896 CTTTCCCCACTCGCCCATT 60.001 57.895 0.00 0.00 0.00 3.16
2302 2816 1.001393 TTTCCCCACTCGCCCATTC 60.001 57.895 0.00 0.00 0.00 2.67
2303 2817 1.784301 TTTCCCCACTCGCCCATTCA 61.784 55.000 0.00 0.00 0.00 2.57
2304 2818 2.438434 CCCCACTCGCCCATTCAC 60.438 66.667 0.00 0.00 0.00 3.18
2305 2819 2.671070 CCCACTCGCCCATTCACT 59.329 61.111 0.00 0.00 0.00 3.41
2306 2820 1.450312 CCCACTCGCCCATTCACTC 60.450 63.158 0.00 0.00 0.00 3.51
2307 2821 1.296392 CCACTCGCCCATTCACTCA 59.704 57.895 0.00 0.00 0.00 3.41
2308 2822 0.321564 CCACTCGCCCATTCACTCAA 60.322 55.000 0.00 0.00 0.00 3.02
2309 2823 0.798776 CACTCGCCCATTCACTCAAC 59.201 55.000 0.00 0.00 0.00 3.18
2310 2824 0.321653 ACTCGCCCATTCACTCAACC 60.322 55.000 0.00 0.00 0.00 3.77
2311 2825 1.002624 TCGCCCATTCACTCAACCC 60.003 57.895 0.00 0.00 0.00 4.11
2312 2826 1.303236 CGCCCATTCACTCAACCCA 60.303 57.895 0.00 0.00 0.00 4.51
2313 2827 1.586154 CGCCCATTCACTCAACCCAC 61.586 60.000 0.00 0.00 0.00 4.61
2314 2828 0.251341 GCCCATTCACTCAACCCACT 60.251 55.000 0.00 0.00 0.00 4.00
2315 2829 1.538047 CCCATTCACTCAACCCACTG 58.462 55.000 0.00 0.00 0.00 3.66
2316 2830 1.202927 CCCATTCACTCAACCCACTGT 60.203 52.381 0.00 0.00 0.00 3.55
2317 2831 2.154462 CCATTCACTCAACCCACTGTC 58.846 52.381 0.00 0.00 0.00 3.51
2318 2832 2.487086 CCATTCACTCAACCCACTGTCA 60.487 50.000 0.00 0.00 0.00 3.58
2319 2833 2.325583 TTCACTCAACCCACTGTCAC 57.674 50.000 0.00 0.00 0.00 3.67
2320 2834 0.468226 TCACTCAACCCACTGTCACC 59.532 55.000 0.00 0.00 0.00 4.02
2321 2835 0.535102 CACTCAACCCACTGTCACCC 60.535 60.000 0.00 0.00 0.00 4.61
2322 2836 1.301716 CTCAACCCACTGTCACCCG 60.302 63.158 0.00 0.00 0.00 5.28
2323 2837 1.754380 CTCAACCCACTGTCACCCGA 61.754 60.000 0.00 0.00 0.00 5.14
2324 2838 1.597027 CAACCCACTGTCACCCGAC 60.597 63.158 0.00 0.00 42.93 4.79
2325 2839 1.764854 AACCCACTGTCACCCGACT 60.765 57.895 0.00 0.00 43.06 4.18
2326 2840 2.040009 AACCCACTGTCACCCGACTG 62.040 60.000 0.00 0.00 43.06 3.51
2327 2841 2.343758 CCACTGTCACCCGACTGG 59.656 66.667 4.79 0.00 43.40 4.00
2338 2852 4.778415 CGACTGGTCGCCACTCCG 62.778 72.222 10.15 0.00 46.50 4.63
2339 2853 3.371063 GACTGGTCGCCACTCCGA 61.371 66.667 0.00 0.00 34.40 4.55
2348 2862 4.087892 CCACTCCGACCCAGCCTG 62.088 72.222 0.00 0.00 0.00 4.85
2349 2863 4.087892 CACTCCGACCCAGCCTGG 62.088 72.222 2.91 2.91 37.25 4.45
2384 2898 4.962836 CATCCGCCATGGCCTCCC 62.963 72.222 30.79 3.46 37.80 4.30
2389 2903 3.890926 GCCATGGCCTCCCCCTAC 61.891 72.222 27.24 0.00 34.56 3.18
2390 2904 2.039405 CCATGGCCTCCCCCTACT 60.039 66.667 3.32 0.00 0.00 2.57
2391 2905 2.150051 CCATGGCCTCCCCCTACTC 61.150 68.421 3.32 0.00 0.00 2.59
2392 2906 2.150051 CATGGCCTCCCCCTACTCC 61.150 68.421 3.32 0.00 0.00 3.85
2393 2907 3.428098 ATGGCCTCCCCCTACTCCC 62.428 68.421 3.32 0.00 0.00 4.30
2394 2908 4.902258 GGCCTCCCCCTACTCCCC 62.902 77.778 0.00 0.00 0.00 4.81
2395 2909 3.780275 GCCTCCCCCTACTCCCCT 61.780 72.222 0.00 0.00 0.00 4.79
2396 2910 3.129976 CCTCCCCCTACTCCCCTT 58.870 66.667 0.00 0.00 0.00 3.95
2397 2911 1.074395 CCTCCCCCTACTCCCCTTC 60.074 68.421 0.00 0.00 0.00 3.46
2398 2912 1.604592 CCTCCCCCTACTCCCCTTCT 61.605 65.000 0.00 0.00 0.00 2.85
2399 2913 0.105401 CTCCCCCTACTCCCCTTCTC 60.105 65.000 0.00 0.00 0.00 2.87
2400 2914 1.074395 CCCCCTACTCCCCTTCTCC 60.074 68.421 0.00 0.00 0.00 3.71
2401 2915 1.604592 CCCCCTACTCCCCTTCTCCT 61.605 65.000 0.00 0.00 0.00 3.69
2402 2916 1.242444 CCCCTACTCCCCTTCTCCTA 58.758 60.000 0.00 0.00 0.00 2.94
2403 2917 1.148236 CCCCTACTCCCCTTCTCCTAG 59.852 61.905 0.00 0.00 0.00 3.02
2404 2918 1.481615 CCCTACTCCCCTTCTCCTAGC 60.482 61.905 0.00 0.00 0.00 3.42
2405 2919 1.481615 CCTACTCCCCTTCTCCTAGCC 60.482 61.905 0.00 0.00 0.00 3.93
2406 2920 1.218196 CTACTCCCCTTCTCCTAGCCA 59.782 57.143 0.00 0.00 0.00 4.75
2407 2921 0.031616 ACTCCCCTTCTCCTAGCCAG 60.032 60.000 0.00 0.00 0.00 4.85
2408 2922 0.263172 CTCCCCTTCTCCTAGCCAGA 59.737 60.000 0.00 0.00 0.00 3.86
2409 2923 0.944999 TCCCCTTCTCCTAGCCAGAT 59.055 55.000 0.00 0.00 0.00 2.90
2410 2924 1.295292 TCCCCTTCTCCTAGCCAGATT 59.705 52.381 0.00 0.00 0.00 2.40
2411 2925 1.419387 CCCCTTCTCCTAGCCAGATTG 59.581 57.143 0.00 0.00 0.00 2.67
2412 2926 2.402564 CCCTTCTCCTAGCCAGATTGA 58.597 52.381 0.00 0.00 0.00 2.57
2413 2927 2.978278 CCCTTCTCCTAGCCAGATTGAT 59.022 50.000 0.00 0.00 0.00 2.57
2414 2928 3.007831 CCCTTCTCCTAGCCAGATTGATC 59.992 52.174 0.00 0.00 0.00 2.92
2415 2929 3.645212 CCTTCTCCTAGCCAGATTGATCA 59.355 47.826 0.00 0.00 0.00 2.92
2416 2930 4.102210 CCTTCTCCTAGCCAGATTGATCAA 59.898 45.833 11.26 11.26 0.00 2.57
2417 2931 5.221884 CCTTCTCCTAGCCAGATTGATCAAT 60.222 44.000 20.85 20.85 0.00 2.57
2418 2932 5.224821 TCTCCTAGCCAGATTGATCAATG 57.775 43.478 25.37 13.39 0.00 2.82
2419 2933 4.041321 TCTCCTAGCCAGATTGATCAATGG 59.959 45.833 25.37 22.15 0.00 3.16
2420 2934 2.818432 CCTAGCCAGATTGATCAATGGC 59.182 50.000 32.36 32.36 39.08 4.40
2421 2935 2.447408 AGCCAGATTGATCAATGGCA 57.553 45.000 36.83 10.62 40.41 4.92
2422 2936 2.958818 AGCCAGATTGATCAATGGCAT 58.041 42.857 36.83 25.53 40.41 4.40
2423 2937 3.305720 AGCCAGATTGATCAATGGCATT 58.694 40.909 36.83 23.80 40.41 3.56
2424 2938 3.321111 AGCCAGATTGATCAATGGCATTC 59.679 43.478 36.83 20.82 40.41 2.67
2425 2939 3.321111 GCCAGATTGATCAATGGCATTCT 59.679 43.478 33.53 20.00 38.80 2.40
2426 2940 4.202223 GCCAGATTGATCAATGGCATTCTT 60.202 41.667 33.53 9.62 38.80 2.52
2427 2941 5.684030 GCCAGATTGATCAATGGCATTCTTT 60.684 40.000 33.53 8.96 38.80 2.52
2428 2942 5.983720 CCAGATTGATCAATGGCATTCTTTC 59.016 40.000 25.37 7.87 0.00 2.62
2429 2943 6.183360 CCAGATTGATCAATGGCATTCTTTCT 60.183 38.462 25.37 10.03 0.00 2.52
2430 2944 7.013942 CCAGATTGATCAATGGCATTCTTTCTA 59.986 37.037 25.37 5.15 0.00 2.10
2431 2945 8.076781 CAGATTGATCAATGGCATTCTTTCTAG 58.923 37.037 25.37 5.00 0.00 2.43
2432 2946 6.704289 TTGATCAATGGCATTCTTTCTAGG 57.296 37.500 10.36 0.00 0.00 3.02
2433 2947 5.135383 TGATCAATGGCATTCTTTCTAGGG 58.865 41.667 10.36 0.00 0.00 3.53
2434 2948 3.290710 TCAATGGCATTCTTTCTAGGGC 58.709 45.455 10.36 0.00 0.00 5.19
2435 2949 3.025978 CAATGGCATTCTTTCTAGGGCA 58.974 45.455 10.36 0.00 38.44 5.36
2436 2950 2.897271 TGGCATTCTTTCTAGGGCAA 57.103 45.000 0.00 0.00 0.00 4.52
2437 2951 3.168035 TGGCATTCTTTCTAGGGCAAA 57.832 42.857 0.00 0.00 0.00 3.68
2438 2952 3.505386 TGGCATTCTTTCTAGGGCAAAA 58.495 40.909 0.00 0.00 0.00 2.44
2439 2953 4.095946 TGGCATTCTTTCTAGGGCAAAAT 58.904 39.130 0.00 0.00 0.00 1.82
2440 2954 4.531732 TGGCATTCTTTCTAGGGCAAAATT 59.468 37.500 0.00 0.00 0.00 1.82
2441 2955 5.719085 TGGCATTCTTTCTAGGGCAAAATTA 59.281 36.000 0.00 0.00 0.00 1.40
2442 2956 6.383726 TGGCATTCTTTCTAGGGCAAAATTAT 59.616 34.615 0.00 0.00 0.00 1.28
2443 2957 6.925718 GGCATTCTTTCTAGGGCAAAATTATC 59.074 38.462 0.00 0.00 0.00 1.75
2444 2958 7.201947 GGCATTCTTTCTAGGGCAAAATTATCT 60.202 37.037 0.00 0.00 0.00 1.98
2445 2959 7.864882 GCATTCTTTCTAGGGCAAAATTATCTC 59.135 37.037 0.00 0.00 0.00 2.75
2446 2960 9.129532 CATTCTTTCTAGGGCAAAATTATCTCT 57.870 33.333 0.00 0.00 0.00 3.10
2447 2961 8.511604 TTCTTTCTAGGGCAAAATTATCTCTG 57.488 34.615 0.00 0.00 0.00 3.35
2448 2962 7.633789 TCTTTCTAGGGCAAAATTATCTCTGT 58.366 34.615 0.00 0.00 0.00 3.41
2449 2963 8.768397 TCTTTCTAGGGCAAAATTATCTCTGTA 58.232 33.333 0.00 0.00 0.00 2.74
2450 2964 9.396022 CTTTCTAGGGCAAAATTATCTCTGTAA 57.604 33.333 0.00 0.00 0.00 2.41
2451 2965 8.732746 TTCTAGGGCAAAATTATCTCTGTAAC 57.267 34.615 0.00 0.00 0.00 2.50
2452 2966 7.857456 TCTAGGGCAAAATTATCTCTGTAACA 58.143 34.615 0.00 0.00 0.00 2.41
2453 2967 8.494433 TCTAGGGCAAAATTATCTCTGTAACAT 58.506 33.333 0.00 0.00 0.00 2.71
2454 2968 7.338800 AGGGCAAAATTATCTCTGTAACATG 57.661 36.000 0.00 0.00 0.00 3.21
2455 2969 6.322201 AGGGCAAAATTATCTCTGTAACATGG 59.678 38.462 0.00 0.00 0.00 3.66
2456 2970 5.979517 GGCAAAATTATCTCTGTAACATGGC 59.020 40.000 0.00 0.00 0.00 4.40
2457 2971 6.405731 GGCAAAATTATCTCTGTAACATGGCA 60.406 38.462 0.00 0.00 0.00 4.92
2458 2972 7.035004 GCAAAATTATCTCTGTAACATGGCAA 58.965 34.615 0.00 0.00 0.00 4.52
2459 2973 7.221452 GCAAAATTATCTCTGTAACATGGCAAG 59.779 37.037 0.00 0.00 0.00 4.01
2460 2974 7.944729 AAATTATCTCTGTAACATGGCAAGT 57.055 32.000 0.00 0.00 0.00 3.16
2461 2975 7.944729 AATTATCTCTGTAACATGGCAAGTT 57.055 32.000 13.08 13.08 0.00 2.66
2462 2976 7.944729 ATTATCTCTGTAACATGGCAAGTTT 57.055 32.000 13.77 0.00 0.00 2.66
2463 2977 5.633830 ATCTCTGTAACATGGCAAGTTTG 57.366 39.130 13.77 0.00 0.00 2.93
2464 2978 4.713553 TCTCTGTAACATGGCAAGTTTGA 58.286 39.130 13.77 8.91 0.00 2.69
2465 2979 4.515191 TCTCTGTAACATGGCAAGTTTGAC 59.485 41.667 13.77 7.42 36.50 3.18
2494 3008 9.567848 AAAATAATGATCACACGGTGAATTAAC 57.432 29.630 16.29 2.04 45.96 2.01
2495 3009 7.857734 ATAATGATCACACGGTGAATTAACA 57.142 32.000 16.29 7.41 45.96 2.41
2496 3010 6.567687 AATGATCACACGGTGAATTAACAA 57.432 33.333 16.29 0.00 45.96 2.83
2497 3011 6.567687 ATGATCACACGGTGAATTAACAAA 57.432 33.333 16.29 0.00 45.96 2.83
2498 3012 5.753744 TGATCACACGGTGAATTAACAAAC 58.246 37.500 16.29 0.00 45.96 2.93
2499 3013 5.297029 TGATCACACGGTGAATTAACAAACA 59.703 36.000 16.29 0.00 45.96 2.83
2500 3014 5.759506 TCACACGGTGAATTAACAAACAT 57.240 34.783 16.29 0.00 39.78 2.71
2501 3015 6.137794 TCACACGGTGAATTAACAAACATT 57.862 33.333 16.29 0.00 39.78 2.71
2502 3016 7.260558 TCACACGGTGAATTAACAAACATTA 57.739 32.000 16.29 0.00 39.78 1.90
2503 3017 7.877003 TCACACGGTGAATTAACAAACATTAT 58.123 30.769 16.29 0.00 39.78 1.28
2504 3018 7.805542 TCACACGGTGAATTAACAAACATTATG 59.194 33.333 16.29 0.00 39.78 1.90
2505 3019 7.593273 CACACGGTGAATTAACAAACATTATGT 59.407 33.333 16.29 0.00 35.23 2.29
2506 3020 8.138712 ACACGGTGAATTAACAAACATTATGTT 58.861 29.630 16.29 4.56 43.41 2.71
2508 3022 9.187455 ACGGTGAATTAACAAACATTATGTTTC 57.813 29.630 19.05 8.24 46.61 2.78
2509 3023 8.643752 CGGTGAATTAACAAACATTATGTTTCC 58.356 33.333 19.05 12.96 46.61 3.13
2510 3024 9.482627 GGTGAATTAACAAACATTATGTTTCCA 57.517 29.630 19.05 6.00 46.61 3.53
2517 3031 8.553459 AACAAACATTATGTTTCCAAAACACA 57.447 26.923 19.05 0.00 46.61 3.72
2518 3032 8.729805 ACAAACATTATGTTTCCAAAACACAT 57.270 26.923 19.05 1.37 46.61 3.21
2519 3033 8.610896 ACAAACATTATGTTTCCAAAACACATG 58.389 29.630 19.05 17.15 46.61 3.21
2520 3034 7.727331 AACATTATGTTTCCAAAACACATGG 57.273 32.000 20.14 2.58 37.26 3.66
2521 3035 6.825610 ACATTATGTTTCCAAAACACATGGT 58.174 32.000 20.14 10.91 39.09 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.220821 TGGTAGGTCAACATGAGAGAGAAC 59.779 45.833 0.00 0.00 0.00 3.01
35 36 2.897326 TCGAACCAAGAGAAGACCATGA 59.103 45.455 0.00 0.00 0.00 3.07
36 37 3.319137 TCGAACCAAGAGAAGACCATG 57.681 47.619 0.00 0.00 0.00 3.66
37 38 3.866651 CATCGAACCAAGAGAAGACCAT 58.133 45.455 0.00 0.00 0.00 3.55
38 39 2.612972 GCATCGAACCAAGAGAAGACCA 60.613 50.000 0.00 0.00 0.00 4.02
39 40 2.003301 GCATCGAACCAAGAGAAGACC 58.997 52.381 0.00 0.00 0.00 3.85
40 41 2.688507 TGCATCGAACCAAGAGAAGAC 58.311 47.619 0.00 0.00 0.00 3.01
41 42 3.067106 GTTGCATCGAACCAAGAGAAGA 58.933 45.455 0.00 0.00 0.00 2.87
42 43 3.070018 AGTTGCATCGAACCAAGAGAAG 58.930 45.455 0.00 0.00 0.00 2.85
43 44 3.126001 AGTTGCATCGAACCAAGAGAA 57.874 42.857 0.00 0.00 0.00 2.87
44 45 2.839486 AGTTGCATCGAACCAAGAGA 57.161 45.000 0.00 0.00 0.00 3.10
45 46 3.904136 AAAGTTGCATCGAACCAAGAG 57.096 42.857 0.00 0.00 0.00 2.85
46 47 3.629855 TCAAAAGTTGCATCGAACCAAGA 59.370 39.130 0.00 0.00 0.00 3.02
47 48 3.963665 TCAAAAGTTGCATCGAACCAAG 58.036 40.909 0.00 0.00 0.00 3.61
48 49 3.380004 ACTCAAAAGTTGCATCGAACCAA 59.620 39.130 0.00 0.00 28.74 3.67
126 413 4.926832 CCAACGATCAAAATTTACCAACCC 59.073 41.667 0.00 0.00 0.00 4.11
131 418 7.940178 AGTTTTCCAACGATCAAAATTTACC 57.060 32.000 0.00 0.00 38.03 2.85
144 431 7.329962 ACTCCTTTTTGTTTTAGTTTTCCAACG 59.670 33.333 0.00 0.00 38.03 4.10
206 514 8.894731 TCAGAGTAGTAGTACATTGATCAGAAC 58.105 37.037 10.33 0.00 0.00 3.01
264 584 4.828296 GGGTGCAGAGCATGGGGG 62.828 72.222 0.00 0.00 41.91 5.40
335 660 0.179153 GCATTTCCTTCGCTTCCAGC 60.179 55.000 0.00 0.00 38.02 4.85
353 678 2.480416 CCTGTCTGATCCTCTTGTACGC 60.480 54.545 0.00 0.00 0.00 4.42
407 736 1.078848 GCACGCCAGGATTCAGAGT 60.079 57.895 0.00 0.00 0.00 3.24
560 891 1.445716 CGAGGACGGGTAGCTACAGG 61.446 65.000 24.75 17.23 35.72 4.00
622 969 2.292794 ATACGTACGCAGGCACAGGG 62.293 60.000 16.72 0.00 0.00 4.45
630 977 4.740205 AGTTTGATGATGATACGTACGCAG 59.260 41.667 16.72 0.00 0.00 5.18
652 1002 2.666862 TGGGCGTGCGGTAACAAG 60.667 61.111 0.00 0.00 0.00 3.16
680 1030 0.737367 TGCAGCGAGAATTCACTCCG 60.737 55.000 8.44 6.70 33.83 4.63
683 1033 1.630244 GCGTGCAGCGAGAATTCACT 61.630 55.000 8.44 0.00 44.77 3.41
699 1067 0.801251 GCTGCAAGAGATCAAAGCGT 59.199 50.000 0.00 0.00 34.07 5.07
715 1083 2.750637 CTGCTCCCCTGCAAGCTG 60.751 66.667 9.40 5.29 42.83 4.24
716 1084 3.255397 ACTGCTCCCCTGCAAGCT 61.255 61.111 9.40 0.00 42.83 3.74
717 1085 3.060615 CACTGCTCCCCTGCAAGC 61.061 66.667 1.00 1.00 42.83 4.01
718 1086 1.376942 CTCACTGCTCCCCTGCAAG 60.377 63.158 0.00 0.00 42.83 4.01
719 1087 2.752358 CTCACTGCTCCCCTGCAA 59.248 61.111 0.00 0.00 42.83 4.08
731 1099 1.593787 CACATCCGTCAGGCTCACT 59.406 57.895 0.00 0.00 37.47 3.41
743 1111 3.019564 CCAGAAATTCACTCCCACATCC 58.980 50.000 0.00 0.00 0.00 3.51
746 1114 1.547675 GGCCAGAAATTCACTCCCACA 60.548 52.381 0.00 0.00 0.00 4.17
760 1128 1.698506 AACCGTGAAAAATGGCCAGA 58.301 45.000 13.05 0.00 38.72 3.86
767 1135 2.605366 CGCAACCAAAACCGTGAAAAAT 59.395 40.909 0.00 0.00 0.00 1.82
776 1144 0.875059 CTCTCCTCGCAACCAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
805 1182 1.210155 GTGCGCCCAGTAAAAGCTG 59.790 57.895 4.18 0.00 36.31 4.24
806 1183 2.325082 CGTGCGCCCAGTAAAAGCT 61.325 57.895 4.18 0.00 0.00 3.74
807 1184 2.175811 CGTGCGCCCAGTAAAAGC 59.824 61.111 4.18 0.00 0.00 3.51
863 1245 3.689649 GCACTTTGTAGATTGTAGGTGGG 59.310 47.826 0.00 0.00 0.00 4.61
864 1246 3.370978 CGCACTTTGTAGATTGTAGGTGG 59.629 47.826 0.00 0.00 0.00 4.61
865 1247 3.181520 GCGCACTTTGTAGATTGTAGGTG 60.182 47.826 0.30 0.00 0.00 4.00
939 1340 4.427394 GCGATCAGCCAGTAGGTG 57.573 61.111 0.00 0.00 45.72 4.00
973 1393 2.649034 GCAGACGGTCAGACGGAA 59.351 61.111 14.73 0.00 38.39 4.30
1384 1832 2.683859 TACTCGTCGCCGTGGTCTG 61.684 63.158 0.00 0.00 35.01 3.51
1386 1834 2.202401 GTACTCGTCGCCGTGGTC 60.202 66.667 0.00 0.00 35.01 4.02
1421 1878 2.721859 CCTCGTGATCATCGCCGA 59.278 61.111 0.00 1.99 0.00 5.54
1424 1881 3.032609 CCGCCTCGTGATCATCGC 61.033 66.667 0.00 0.00 0.00 4.58
1591 2052 0.179161 CGCTACGACAAGACCTCTGG 60.179 60.000 0.00 0.00 0.00 3.86
1597 2058 1.536149 CTACTGCGCTACGACAAGAC 58.464 55.000 9.73 0.00 0.00 3.01
1602 2063 1.134530 CACTGCTACTGCGCTACGAC 61.135 60.000 9.73 0.00 43.34 4.34
1604 2065 1.134530 GTCACTGCTACTGCGCTACG 61.135 60.000 9.73 0.00 43.34 3.51
1606 2067 1.671328 CTAGTCACTGCTACTGCGCTA 59.329 52.381 9.73 0.00 43.34 4.26
1610 2071 2.490115 ACTCACTAGTCACTGCTACTGC 59.510 50.000 0.00 0.00 40.20 4.40
1611 2072 4.201734 CGTACTCACTAGTCACTGCTACTG 60.202 50.000 0.00 0.00 37.15 2.74
1614 2075 3.935315 ACGTACTCACTAGTCACTGCTA 58.065 45.455 0.00 0.00 37.15 3.49
1617 2078 3.922850 TCGTACGTACTCACTAGTCACTG 59.077 47.826 22.55 3.42 37.15 3.66
1623 2084 3.059733 GGCTGATCGTACGTACTCACTAG 60.060 52.174 22.55 14.46 0.00 2.57
1708 2182 9.269453 CATGTCAATTCTAATCAGCTCTGAATA 57.731 33.333 3.47 0.00 43.58 1.75
1737 2211 5.684704 TCTAATCAGTAGGCAAATGAAGGG 58.315 41.667 0.00 0.00 0.00 3.95
1738 2212 6.238593 GCTTCTAATCAGTAGGCAAATGAAGG 60.239 42.308 0.00 0.00 0.00 3.46
1754 2238 3.116300 TCAGATTCGCACGCTTCTAATC 58.884 45.455 0.00 0.00 0.00 1.75
1802 2286 4.758674 GGAACATGATGTCGATTCCATGAT 59.241 41.667 22.13 14.67 38.96 2.45
1856 2340 6.910536 ACGAGAAGTATAGATTGGCAAAAG 57.089 37.500 3.01 0.00 0.00 2.27
1939 2444 7.872138 AGGACCATATCAATACTTTTTCTCCA 58.128 34.615 0.00 0.00 0.00 3.86
1941 2446 8.552034 CGAAGGACCATATCAATACTTTTTCTC 58.448 37.037 0.00 0.00 0.00 2.87
1952 2458 2.971660 TTCGCGAAGGACCATATCAA 57.028 45.000 19.38 0.00 0.00 2.57
1964 2470 7.142680 ACATTTCCTTTTTCTATTTTCGCGAA 58.857 30.769 19.38 19.38 0.00 4.70
1966 2472 6.927933 ACATTTCCTTTTTCTATTTTCGCG 57.072 33.333 0.00 0.00 0.00 5.87
1982 2490 9.490663 CTTTTACGAGTTATCATCAACATTTCC 57.509 33.333 0.00 0.00 0.00 3.13
1989 2497 9.667107 ATTCTTCCTTTTACGAGTTATCATCAA 57.333 29.630 0.00 0.00 0.00 2.57
2051 2565 5.239087 TCCGAATTGCTTAAAACCTAACGTT 59.761 36.000 5.88 5.88 35.70 3.99
2054 2568 5.093457 GCTCCGAATTGCTTAAAACCTAAC 58.907 41.667 0.00 0.00 0.00 2.34
2058 2572 2.160813 TCGCTCCGAATTGCTTAAAACC 59.839 45.455 0.00 0.00 31.06 3.27
2059 2573 3.465122 TCGCTCCGAATTGCTTAAAAC 57.535 42.857 0.00 0.00 31.06 2.43
2087 2601 2.109126 GCTCCATCTGACGGCCAAC 61.109 63.158 2.24 0.00 0.00 3.77
2088 2602 2.268920 GCTCCATCTGACGGCCAA 59.731 61.111 2.24 0.00 0.00 4.52
2089 2603 3.002583 TGCTCCATCTGACGGCCA 61.003 61.111 2.24 0.00 0.00 5.36
2090 2604 2.512515 GTGCTCCATCTGACGGCC 60.513 66.667 0.00 0.00 0.00 6.13
2091 2605 2.103042 GTGTGCTCCATCTGACGGC 61.103 63.158 0.00 0.00 0.00 5.68
2092 2606 1.807165 CGTGTGCTCCATCTGACGG 60.807 63.158 0.00 0.00 0.00 4.79
2093 2607 1.073216 GACGTGTGCTCCATCTGACG 61.073 60.000 0.00 0.00 0.00 4.35
2094 2608 0.244994 AGACGTGTGCTCCATCTGAC 59.755 55.000 0.00 0.00 0.00 3.51
2095 2609 1.834188 TAGACGTGTGCTCCATCTGA 58.166 50.000 0.00 0.00 0.00 3.27
2096 2610 2.654749 TTAGACGTGTGCTCCATCTG 57.345 50.000 0.00 0.00 0.00 2.90
2097 2611 3.055819 ACATTTAGACGTGTGCTCCATCT 60.056 43.478 0.00 0.00 0.00 2.90
2098 2612 3.062639 CACATTTAGACGTGTGCTCCATC 59.937 47.826 0.00 0.00 39.23 3.51
2099 2613 3.002791 CACATTTAGACGTGTGCTCCAT 58.997 45.455 0.00 0.00 39.23 3.41
2100 2614 2.412870 CACATTTAGACGTGTGCTCCA 58.587 47.619 0.00 0.00 39.23 3.86
2123 2637 9.590451 CTTGGAACTTTGATGTGCAATATTTAT 57.410 29.630 0.00 0.00 36.15 1.40
2124 2638 8.584157 ACTTGGAACTTTGATGTGCAATATTTA 58.416 29.630 0.00 0.00 36.15 1.40
2125 2639 7.444299 ACTTGGAACTTTGATGTGCAATATTT 58.556 30.769 0.00 0.00 36.15 1.40
2126 2640 6.996509 ACTTGGAACTTTGATGTGCAATATT 58.003 32.000 0.00 0.00 36.15 1.28
2127 2641 6.209192 TGACTTGGAACTTTGATGTGCAATAT 59.791 34.615 0.00 0.00 36.15 1.28
2128 2642 5.534278 TGACTTGGAACTTTGATGTGCAATA 59.466 36.000 0.00 0.00 36.15 1.90
2129 2643 4.341806 TGACTTGGAACTTTGATGTGCAAT 59.658 37.500 0.00 0.00 36.15 3.56
2130 2644 3.698539 TGACTTGGAACTTTGATGTGCAA 59.301 39.130 0.00 0.00 33.88 4.08
2131 2645 3.286353 TGACTTGGAACTTTGATGTGCA 58.714 40.909 0.00 0.00 0.00 4.57
2132 2646 3.988379 TGACTTGGAACTTTGATGTGC 57.012 42.857 0.00 0.00 0.00 4.57
2133 2647 6.075762 TCAATGACTTGGAACTTTGATGTG 57.924 37.500 0.00 0.00 32.95 3.21
2134 2648 6.348786 CGATCAATGACTTGGAACTTTGATGT 60.349 38.462 0.00 0.00 39.33 3.06
2135 2649 6.025896 CGATCAATGACTTGGAACTTTGATG 58.974 40.000 0.00 0.00 39.33 3.07
2136 2650 5.707298 ACGATCAATGACTTGGAACTTTGAT 59.293 36.000 0.00 0.00 40.74 2.57
2137 2651 5.063204 ACGATCAATGACTTGGAACTTTGA 58.937 37.500 0.00 0.00 35.69 2.69
2138 2652 5.362556 ACGATCAATGACTTGGAACTTTG 57.637 39.130 0.00 0.00 32.95 2.77
2139 2653 5.120208 CGTACGATCAATGACTTGGAACTTT 59.880 40.000 10.44 0.00 32.95 2.66
2140 2654 4.625742 CGTACGATCAATGACTTGGAACTT 59.374 41.667 10.44 0.00 32.95 2.66
2141 2655 4.174009 CGTACGATCAATGACTTGGAACT 58.826 43.478 10.44 0.00 32.95 3.01
2142 2656 3.241995 GCGTACGATCAATGACTTGGAAC 60.242 47.826 21.65 0.00 32.95 3.62
2143 2657 2.927477 GCGTACGATCAATGACTTGGAA 59.073 45.455 21.65 0.00 32.95 3.53
2144 2658 2.536365 GCGTACGATCAATGACTTGGA 58.464 47.619 21.65 0.00 32.95 3.53
2145 2659 1.255342 CGCGTACGATCAATGACTTGG 59.745 52.381 21.65 0.00 43.93 3.61
2146 2660 1.255342 CCGCGTACGATCAATGACTTG 59.745 52.381 21.65 0.00 43.93 3.16
2147 2661 1.133598 TCCGCGTACGATCAATGACTT 59.866 47.619 21.65 0.00 43.93 3.01
2148 2662 0.736636 TCCGCGTACGATCAATGACT 59.263 50.000 21.65 0.00 43.93 3.41
2149 2663 1.121240 CTCCGCGTACGATCAATGAC 58.879 55.000 21.65 0.00 43.93 3.06
2150 2664 1.018910 TCTCCGCGTACGATCAATGA 58.981 50.000 21.65 5.77 43.93 2.57
2151 2665 2.051879 ATCTCCGCGTACGATCAATG 57.948 50.000 21.65 3.34 43.93 2.82
2152 2666 2.034179 TGAATCTCCGCGTACGATCAAT 59.966 45.455 21.65 2.06 43.93 2.57
2153 2667 1.402613 TGAATCTCCGCGTACGATCAA 59.597 47.619 21.65 0.00 43.93 2.57
2154 2668 1.018910 TGAATCTCCGCGTACGATCA 58.981 50.000 21.65 7.79 43.93 2.92
2155 2669 1.979469 CATGAATCTCCGCGTACGATC 59.021 52.381 21.65 0.32 43.93 3.69
2156 2670 1.337071 ACATGAATCTCCGCGTACGAT 59.663 47.619 21.65 0.00 43.93 3.73
2157 2671 0.736636 ACATGAATCTCCGCGTACGA 59.263 50.000 21.65 0.00 43.93 3.43
2158 2672 0.846401 CACATGAATCTCCGCGTACG 59.154 55.000 11.84 11.84 39.67 3.67
2159 2673 1.202371 TCCACATGAATCTCCGCGTAC 60.202 52.381 4.92 0.00 0.00 3.67
2160 2674 1.107945 TCCACATGAATCTCCGCGTA 58.892 50.000 4.92 0.00 0.00 4.42
2161 2675 0.465705 ATCCACATGAATCTCCGCGT 59.534 50.000 4.92 0.00 0.00 6.01
2162 2676 2.438868 TATCCACATGAATCTCCGCG 57.561 50.000 0.00 0.00 0.00 6.46
2163 2677 5.693814 GAAAATATCCACATGAATCTCCGC 58.306 41.667 0.00 0.00 0.00 5.54
2183 2697 9.653287 GAAGAAAAAGAAGAAGGAAAAAGGAAA 57.347 29.630 0.00 0.00 0.00 3.13
2184 2698 9.035890 AGAAGAAAAAGAAGAAGGAAAAAGGAA 57.964 29.630 0.00 0.00 0.00 3.36
2185 2699 8.595362 AGAAGAAAAAGAAGAAGGAAAAAGGA 57.405 30.769 0.00 0.00 0.00 3.36
2188 2702 9.783256 CGTAAGAAGAAAAAGAAGAAGGAAAAA 57.217 29.630 0.00 0.00 43.02 1.94
2189 2703 7.913821 GCGTAAGAAGAAAAAGAAGAAGGAAAA 59.086 33.333 0.00 0.00 43.02 2.29
2190 2704 7.282450 AGCGTAAGAAGAAAAAGAAGAAGGAAA 59.718 33.333 0.00 0.00 43.02 3.13
2191 2705 6.766467 AGCGTAAGAAGAAAAAGAAGAAGGAA 59.234 34.615 0.00 0.00 43.02 3.36
2192 2706 6.289064 AGCGTAAGAAGAAAAAGAAGAAGGA 58.711 36.000 0.00 0.00 43.02 3.36
2193 2707 6.546972 AGCGTAAGAAGAAAAAGAAGAAGG 57.453 37.500 0.00 0.00 43.02 3.46
2194 2708 7.630924 TCAAGCGTAAGAAGAAAAAGAAGAAG 58.369 34.615 0.00 0.00 43.02 2.85
2195 2709 7.548196 TCAAGCGTAAGAAGAAAAAGAAGAA 57.452 32.000 0.00 0.00 43.02 2.52
2196 2710 7.730364 ATCAAGCGTAAGAAGAAAAAGAAGA 57.270 32.000 0.00 0.00 43.02 2.87
2197 2711 8.070171 TCAATCAAGCGTAAGAAGAAAAAGAAG 58.930 33.333 0.00 0.00 43.02 2.85
2198 2712 7.925993 TCAATCAAGCGTAAGAAGAAAAAGAA 58.074 30.769 0.00 0.00 43.02 2.52
2199 2713 7.490962 TCAATCAAGCGTAAGAAGAAAAAGA 57.509 32.000 0.00 0.00 43.02 2.52
2200 2714 8.633408 CATTCAATCAAGCGTAAGAAGAAAAAG 58.367 33.333 0.00 0.00 43.02 2.27
2201 2715 8.349245 TCATTCAATCAAGCGTAAGAAGAAAAA 58.651 29.630 0.00 0.00 43.02 1.94
2202 2716 7.803189 GTCATTCAATCAAGCGTAAGAAGAAAA 59.197 33.333 0.00 0.00 43.02 2.29
2203 2717 7.173218 AGTCATTCAATCAAGCGTAAGAAGAAA 59.827 33.333 0.00 0.00 43.02 2.52
2204 2718 6.650807 AGTCATTCAATCAAGCGTAAGAAGAA 59.349 34.615 0.00 0.00 43.02 2.52
2205 2719 6.166279 AGTCATTCAATCAAGCGTAAGAAGA 58.834 36.000 0.00 0.00 43.02 2.87
2206 2720 6.414408 AGTCATTCAATCAAGCGTAAGAAG 57.586 37.500 0.00 0.00 43.02 2.85
2207 2721 6.348458 CCAAGTCATTCAATCAAGCGTAAGAA 60.348 38.462 0.00 0.00 43.02 2.52
2208 2722 5.122239 CCAAGTCATTCAATCAAGCGTAAGA 59.878 40.000 0.00 0.00 43.02 2.10
2209 2723 5.122239 TCCAAGTCATTCAATCAAGCGTAAG 59.878 40.000 0.00 0.00 43.44 2.34
2210 2724 5.000591 TCCAAGTCATTCAATCAAGCGTAA 58.999 37.500 0.00 0.00 0.00 3.18
2211 2725 4.574892 TCCAAGTCATTCAATCAAGCGTA 58.425 39.130 0.00 0.00 0.00 4.42
2212 2726 3.411446 TCCAAGTCATTCAATCAAGCGT 58.589 40.909 0.00 0.00 0.00 5.07
2213 2727 4.142534 ACATCCAAGTCATTCAATCAAGCG 60.143 41.667 0.00 0.00 0.00 4.68
2214 2728 5.100259 CACATCCAAGTCATTCAATCAAGC 58.900 41.667 0.00 0.00 0.00 4.01
2215 2729 6.263516 ACACATCCAAGTCATTCAATCAAG 57.736 37.500 0.00 0.00 0.00 3.02
2216 2730 7.757941 TTACACATCCAAGTCATTCAATCAA 57.242 32.000 0.00 0.00 0.00 2.57
2217 2731 7.943079 ATTACACATCCAAGTCATTCAATCA 57.057 32.000 0.00 0.00 0.00 2.57
2218 2732 9.722056 GTTATTACACATCCAAGTCATTCAATC 57.278 33.333 0.00 0.00 0.00 2.67
2219 2733 9.466497 AGTTATTACACATCCAAGTCATTCAAT 57.534 29.630 0.00 0.00 0.00 2.57
2220 2734 8.862325 AGTTATTACACATCCAAGTCATTCAA 57.138 30.769 0.00 0.00 0.00 2.69
2221 2735 9.599866 CTAGTTATTACACATCCAAGTCATTCA 57.400 33.333 0.00 0.00 0.00 2.57
2222 2736 9.817809 TCTAGTTATTACACATCCAAGTCATTC 57.182 33.333 0.00 0.00 0.00 2.67
2227 2741 9.227777 GGTTTTCTAGTTATTACACATCCAAGT 57.772 33.333 0.00 0.00 0.00 3.16
2228 2742 8.674607 GGGTTTTCTAGTTATTACACATCCAAG 58.325 37.037 0.00 0.00 0.00 3.61
2229 2743 8.387813 AGGGTTTTCTAGTTATTACACATCCAA 58.612 33.333 0.00 0.00 0.00 3.53
2230 2744 7.924541 AGGGTTTTCTAGTTATTACACATCCA 58.075 34.615 0.00 0.00 0.00 3.41
2231 2745 8.803397 AAGGGTTTTCTAGTTATTACACATCC 57.197 34.615 0.00 0.00 0.00 3.51
2242 2756 9.736414 GAGGAATTAAGTAAGGGTTTTCTAGTT 57.264 33.333 0.00 0.00 0.00 2.24
2243 2757 9.113797 AGAGGAATTAAGTAAGGGTTTTCTAGT 57.886 33.333 0.00 0.00 0.00 2.57
2244 2758 9.961264 AAGAGGAATTAAGTAAGGGTTTTCTAG 57.039 33.333 0.00 0.00 0.00 2.43
2248 2762 9.696572 GGATAAGAGGAATTAAGTAAGGGTTTT 57.303 33.333 0.00 0.00 0.00 2.43
2249 2763 9.070210 AGGATAAGAGGAATTAAGTAAGGGTTT 57.930 33.333 0.00 0.00 0.00 3.27
2250 2764 8.640033 AGGATAAGAGGAATTAAGTAAGGGTT 57.360 34.615 0.00 0.00 0.00 4.11
2251 2765 9.915564 ATAGGATAAGAGGAATTAAGTAAGGGT 57.084 33.333 0.00 0.00 0.00 4.34
2256 2770 9.907819 TCCCAATAGGATAAGAGGAATTAAGTA 57.092 33.333 0.00 0.00 40.93 2.24
2257 2771 8.814448 TCCCAATAGGATAAGAGGAATTAAGT 57.186 34.615 0.00 0.00 40.93 2.24
2280 2794 2.046217 GGCGAGTGGGGAAAGTCC 60.046 66.667 0.00 0.00 35.23 3.85
2281 2795 2.046217 GGGCGAGTGGGGAAAGTC 60.046 66.667 0.00 0.00 0.00 3.01
2282 2796 1.789576 AATGGGCGAGTGGGGAAAGT 61.790 55.000 0.00 0.00 0.00 2.66
2283 2797 1.000896 AATGGGCGAGTGGGGAAAG 60.001 57.895 0.00 0.00 0.00 2.62
2284 2798 1.001393 GAATGGGCGAGTGGGGAAA 60.001 57.895 0.00 0.00 0.00 3.13
2285 2799 2.227757 TGAATGGGCGAGTGGGGAA 61.228 57.895 0.00 0.00 0.00 3.97
2286 2800 2.609299 TGAATGGGCGAGTGGGGA 60.609 61.111 0.00 0.00 0.00 4.81
2287 2801 2.438434 GTGAATGGGCGAGTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
2288 2802 1.450312 GAGTGAATGGGCGAGTGGG 60.450 63.158 0.00 0.00 0.00 4.61
2289 2803 0.321564 TTGAGTGAATGGGCGAGTGG 60.322 55.000 0.00 0.00 0.00 4.00
2290 2804 0.798776 GTTGAGTGAATGGGCGAGTG 59.201 55.000 0.00 0.00 0.00 3.51
2291 2805 0.321653 GGTTGAGTGAATGGGCGAGT 60.322 55.000 0.00 0.00 0.00 4.18
2292 2806 1.026718 GGGTTGAGTGAATGGGCGAG 61.027 60.000 0.00 0.00 0.00 5.03
2293 2807 1.002624 GGGTTGAGTGAATGGGCGA 60.003 57.895 0.00 0.00 0.00 5.54
2294 2808 1.303236 TGGGTTGAGTGAATGGGCG 60.303 57.895 0.00 0.00 0.00 6.13
2295 2809 0.251341 AGTGGGTTGAGTGAATGGGC 60.251 55.000 0.00 0.00 0.00 5.36
2296 2810 1.202927 ACAGTGGGTTGAGTGAATGGG 60.203 52.381 0.00 0.00 0.00 4.00
2297 2811 2.154462 GACAGTGGGTTGAGTGAATGG 58.846 52.381 0.00 0.00 0.00 3.16
2298 2812 2.549754 GTGACAGTGGGTTGAGTGAATG 59.450 50.000 0.00 0.00 0.00 2.67
2299 2813 2.487265 GGTGACAGTGGGTTGAGTGAAT 60.487 50.000 0.00 0.00 0.00 2.57
2300 2814 1.134220 GGTGACAGTGGGTTGAGTGAA 60.134 52.381 0.00 0.00 0.00 3.18
2301 2815 0.468226 GGTGACAGTGGGTTGAGTGA 59.532 55.000 0.00 0.00 0.00 3.41
2302 2816 0.535102 GGGTGACAGTGGGTTGAGTG 60.535 60.000 0.00 0.00 0.00 3.51
2303 2817 1.837090 GGGTGACAGTGGGTTGAGT 59.163 57.895 0.00 0.00 0.00 3.41
2304 2818 1.301716 CGGGTGACAGTGGGTTGAG 60.302 63.158 0.00 0.00 0.00 3.02
2305 2819 1.762858 TCGGGTGACAGTGGGTTGA 60.763 57.895 0.00 0.00 0.00 3.18
2306 2820 1.597027 GTCGGGTGACAGTGGGTTG 60.597 63.158 0.00 0.00 44.82 3.77
2307 2821 2.826702 GTCGGGTGACAGTGGGTT 59.173 61.111 0.00 0.00 44.82 4.11
2323 2837 3.681835 GTCGGAGTGGCGACCAGT 61.682 66.667 5.99 5.99 40.30 4.00
2327 2841 4.436998 CTGGGTCGGAGTGGCGAC 62.437 72.222 0.00 0.00 34.71 5.19
2331 2845 4.087892 CAGGCTGGGTCGGAGTGG 62.088 72.222 6.61 0.00 0.00 4.00
2332 2846 4.087892 CCAGGCTGGGTCGGAGTG 62.088 72.222 26.34 0.00 32.67 3.51
2367 2881 4.962836 GGGAGGCCATGGCGGATG 62.963 72.222 29.90 0.00 43.06 3.51
2372 2886 3.890926 GTAGGGGGAGGCCATGGC 61.891 72.222 29.47 29.47 41.06 4.40
2373 2887 2.039405 AGTAGGGGGAGGCCATGG 60.039 66.667 7.63 7.63 0.00 3.66
2374 2888 2.150051 GGAGTAGGGGGAGGCCATG 61.150 68.421 5.01 0.00 0.00 3.66
2375 2889 2.290745 GGAGTAGGGGGAGGCCAT 59.709 66.667 5.01 0.00 0.00 4.40
2376 2890 4.103928 GGGAGTAGGGGGAGGCCA 62.104 72.222 5.01 0.00 0.00 5.36
2377 2891 4.902258 GGGGAGTAGGGGGAGGCC 62.902 77.778 0.00 0.00 0.00 5.19
2378 2892 3.349090 AAGGGGAGTAGGGGGAGGC 62.349 68.421 0.00 0.00 0.00 4.70
2379 2893 1.074395 GAAGGGGAGTAGGGGGAGG 60.074 68.421 0.00 0.00 0.00 4.30
2380 2894 0.105401 GAGAAGGGGAGTAGGGGGAG 60.105 65.000 0.00 0.00 0.00 4.30
2381 2895 1.600763 GGAGAAGGGGAGTAGGGGGA 61.601 65.000 0.00 0.00 0.00 4.81
2382 2896 1.074395 GGAGAAGGGGAGTAGGGGG 60.074 68.421 0.00 0.00 0.00 5.40
2383 2897 1.148236 CTAGGAGAAGGGGAGTAGGGG 59.852 61.905 0.00 0.00 0.00 4.79
2384 2898 1.481615 GCTAGGAGAAGGGGAGTAGGG 60.482 61.905 0.00 0.00 0.00 3.53
2385 2899 1.481615 GGCTAGGAGAAGGGGAGTAGG 60.482 61.905 0.00 0.00 0.00 3.18
2386 2900 1.218196 TGGCTAGGAGAAGGGGAGTAG 59.782 57.143 0.00 0.00 0.00 2.57
2387 2901 1.218196 CTGGCTAGGAGAAGGGGAGTA 59.782 57.143 0.00 0.00 0.00 2.59
2388 2902 0.031616 CTGGCTAGGAGAAGGGGAGT 60.032 60.000 0.00 0.00 0.00 3.85
2389 2903 0.263172 TCTGGCTAGGAGAAGGGGAG 59.737 60.000 0.00 0.00 0.00 4.30
2390 2904 0.944999 ATCTGGCTAGGAGAAGGGGA 59.055 55.000 0.00 0.00 0.00 4.81
2391 2905 1.419387 CAATCTGGCTAGGAGAAGGGG 59.581 57.143 0.00 0.00 0.00 4.79
2392 2906 2.402564 TCAATCTGGCTAGGAGAAGGG 58.597 52.381 0.00 0.00 0.00 3.95
2393 2907 3.645212 TGATCAATCTGGCTAGGAGAAGG 59.355 47.826 0.00 0.00 0.00 3.46
2394 2908 4.952071 TGATCAATCTGGCTAGGAGAAG 57.048 45.455 0.00 0.00 0.00 2.85
2395 2909 5.455755 CCATTGATCAATCTGGCTAGGAGAA 60.456 44.000 18.16 0.00 0.00 2.87
2396 2910 4.041321 CCATTGATCAATCTGGCTAGGAGA 59.959 45.833 18.16 0.00 0.00 3.71
2397 2911 4.325119 CCATTGATCAATCTGGCTAGGAG 58.675 47.826 18.16 3.34 0.00 3.69
2398 2912 3.497405 GCCATTGATCAATCTGGCTAGGA 60.497 47.826 32.20 2.24 37.09 2.94
2399 2913 2.818432 GCCATTGATCAATCTGGCTAGG 59.182 50.000 32.20 22.78 37.09 3.02
2400 2914 3.483421 TGCCATTGATCAATCTGGCTAG 58.517 45.455 35.73 18.64 39.35 3.42
2401 2915 3.581265 TGCCATTGATCAATCTGGCTA 57.419 42.857 35.73 25.54 39.35 3.93
2402 2916 2.447408 TGCCATTGATCAATCTGGCT 57.553 45.000 35.73 11.79 39.35 4.75
2403 2917 3.321111 AGAATGCCATTGATCAATCTGGC 59.679 43.478 32.57 32.57 39.18 4.85
2404 2918 5.531122 AAGAATGCCATTGATCAATCTGG 57.469 39.130 18.16 19.02 0.00 3.86
2405 2919 6.806751 AGAAAGAATGCCATTGATCAATCTG 58.193 36.000 18.16 13.04 0.00 2.90
2406 2920 7.230913 CCTAGAAAGAATGCCATTGATCAATCT 59.769 37.037 18.16 9.38 0.00 2.40
2407 2921 7.368833 CCTAGAAAGAATGCCATTGATCAATC 58.631 38.462 18.16 8.90 0.00 2.67
2408 2922 6.267014 CCCTAGAAAGAATGCCATTGATCAAT 59.733 38.462 15.36 15.36 0.00 2.57
2409 2923 5.595542 CCCTAGAAAGAATGCCATTGATCAA 59.404 40.000 11.26 11.26 0.00 2.57
2410 2924 5.135383 CCCTAGAAAGAATGCCATTGATCA 58.865 41.667 0.00 0.00 0.00 2.92
2411 2925 4.022503 GCCCTAGAAAGAATGCCATTGATC 60.023 45.833 0.00 0.00 0.00 2.92
2412 2926 3.893813 GCCCTAGAAAGAATGCCATTGAT 59.106 43.478 0.00 0.00 0.00 2.57
2413 2927 3.290710 GCCCTAGAAAGAATGCCATTGA 58.709 45.455 0.00 0.00 0.00 2.57
2414 2928 3.025978 TGCCCTAGAAAGAATGCCATTG 58.974 45.455 0.00 0.00 0.00 2.82
2415 2929 3.386932 TGCCCTAGAAAGAATGCCATT 57.613 42.857 0.00 0.00 0.00 3.16
2416 2930 3.386932 TTGCCCTAGAAAGAATGCCAT 57.613 42.857 0.00 0.00 0.00 4.40
2417 2931 2.897271 TTGCCCTAGAAAGAATGCCA 57.103 45.000 0.00 0.00 0.00 4.92
2418 2932 4.743057 ATTTTGCCCTAGAAAGAATGCC 57.257 40.909 0.00 0.00 0.00 4.40
2419 2933 7.720442 AGATAATTTTGCCCTAGAAAGAATGC 58.280 34.615 0.00 0.00 0.00 3.56
2420 2934 9.129532 AGAGATAATTTTGCCCTAGAAAGAATG 57.870 33.333 0.00 0.00 0.00 2.67
2421 2935 9.129532 CAGAGATAATTTTGCCCTAGAAAGAAT 57.870 33.333 0.00 0.00 0.00 2.40
2422 2936 8.109634 ACAGAGATAATTTTGCCCTAGAAAGAA 58.890 33.333 0.00 0.00 0.00 2.52
2423 2937 7.633789 ACAGAGATAATTTTGCCCTAGAAAGA 58.366 34.615 0.00 0.00 0.00 2.52
2424 2938 7.872113 ACAGAGATAATTTTGCCCTAGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
2425 2939 9.174166 GTTACAGAGATAATTTTGCCCTAGAAA 57.826 33.333 0.00 0.00 0.00 2.52
2426 2940 8.325787 TGTTACAGAGATAATTTTGCCCTAGAA 58.674 33.333 0.00 0.00 0.00 2.10
2427 2941 7.857456 TGTTACAGAGATAATTTTGCCCTAGA 58.143 34.615 0.00 0.00 0.00 2.43
2428 2942 8.562892 CATGTTACAGAGATAATTTTGCCCTAG 58.437 37.037 0.00 0.00 0.00 3.02
2429 2943 7.502226 CCATGTTACAGAGATAATTTTGCCCTA 59.498 37.037 0.00 0.00 0.00 3.53
2430 2944 6.322201 CCATGTTACAGAGATAATTTTGCCCT 59.678 38.462 0.00 0.00 0.00 5.19
2431 2945 6.507023 CCATGTTACAGAGATAATTTTGCCC 58.493 40.000 0.00 0.00 0.00 5.36
2432 2946 5.979517 GCCATGTTACAGAGATAATTTTGCC 59.020 40.000 0.00 0.00 0.00 4.52
2433 2947 6.563422 TGCCATGTTACAGAGATAATTTTGC 58.437 36.000 0.00 0.00 0.00 3.68
2434 2948 8.246180 ACTTGCCATGTTACAGAGATAATTTTG 58.754 33.333 0.00 0.00 0.00 2.44
2435 2949 8.353423 ACTTGCCATGTTACAGAGATAATTTT 57.647 30.769 0.00 0.00 0.00 1.82
2436 2950 7.944729 ACTTGCCATGTTACAGAGATAATTT 57.055 32.000 0.00 0.00 0.00 1.82
2437 2951 7.944729 AACTTGCCATGTTACAGAGATAATT 57.055 32.000 0.00 0.00 0.00 1.40
2438 2952 7.611467 TCAAACTTGCCATGTTACAGAGATAAT 59.389 33.333 0.00 0.00 0.00 1.28
2439 2953 6.939730 TCAAACTTGCCATGTTACAGAGATAA 59.060 34.615 0.00 0.00 0.00 1.75
2440 2954 6.371548 GTCAAACTTGCCATGTTACAGAGATA 59.628 38.462 0.00 0.00 0.00 1.98
2441 2955 5.182001 GTCAAACTTGCCATGTTACAGAGAT 59.818 40.000 0.00 0.00 0.00 2.75
2442 2956 4.515191 GTCAAACTTGCCATGTTACAGAGA 59.485 41.667 0.00 0.00 0.00 3.10
2443 2957 4.275689 TGTCAAACTTGCCATGTTACAGAG 59.724 41.667 0.00 0.00 0.00 3.35
2444 2958 4.203226 TGTCAAACTTGCCATGTTACAGA 58.797 39.130 0.00 0.00 0.00 3.41
2445 2959 4.566545 TGTCAAACTTGCCATGTTACAG 57.433 40.909 0.00 0.00 0.00 2.74
2446 2960 4.991153 TTGTCAAACTTGCCATGTTACA 57.009 36.364 0.00 0.00 0.00 2.41
2447 2961 6.654793 TTTTTGTCAAACTTGCCATGTTAC 57.345 33.333 0.00 0.00 0.00 2.50
2468 2982 9.567848 GTTAATTCACCGTGTGATCATTATTTT 57.432 29.630 0.00 0.00 42.40 1.82
2469 2983 8.735315 TGTTAATTCACCGTGTGATCATTATTT 58.265 29.630 0.00 0.00 42.40 1.40
2470 2984 8.275015 TGTTAATTCACCGTGTGATCATTATT 57.725 30.769 0.00 6.78 42.40 1.40
2471 2985 7.857734 TGTTAATTCACCGTGTGATCATTAT 57.142 32.000 0.00 0.00 42.40 1.28
2472 2986 7.674471 TTGTTAATTCACCGTGTGATCATTA 57.326 32.000 0.00 7.11 42.40 1.90
2473 2987 6.567687 TTGTTAATTCACCGTGTGATCATT 57.432 33.333 0.00 7.88 42.40 2.57
2474 2988 6.016693 TGTTTGTTAATTCACCGTGTGATCAT 60.017 34.615 0.00 0.00 42.40 2.45
2475 2989 5.297029 TGTTTGTTAATTCACCGTGTGATCA 59.703 36.000 7.43 0.00 42.40 2.92
2476 2990 5.753744 TGTTTGTTAATTCACCGTGTGATC 58.246 37.500 7.43 0.00 42.40 2.92
2477 2991 5.759506 TGTTTGTTAATTCACCGTGTGAT 57.240 34.783 7.43 0.00 42.40 3.06
2478 2992 5.759506 ATGTTTGTTAATTCACCGTGTGA 57.240 34.783 0.00 3.02 41.09 3.58
2479 2993 7.593273 ACATAATGTTTGTTAATTCACCGTGTG 59.407 33.333 0.00 0.00 34.45 3.82
2480 2994 7.653647 ACATAATGTTTGTTAATTCACCGTGT 58.346 30.769 0.00 0.00 0.00 4.49
2481 2995 8.514136 AACATAATGTTTGTTAATTCACCGTG 57.486 30.769 0.00 0.00 37.26 4.94
2496 3010 7.278875 ACCATGTGTTTTGGAAACATAATGTT 58.721 30.769 19.48 10.82 42.32 2.71
2497 3011 6.825610 ACCATGTGTTTTGGAAACATAATGT 58.174 32.000 19.48 12.46 42.32 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.