Multiple sequence alignment - TraesCS1A01G407100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G407100 chr1A 100.000 4707 0 0 1 4707 569469831 569465125 0.000000e+00 8693.0
1 TraesCS1A01G407100 chr1A 87.409 548 58 7 4 548 330752738 330752199 1.860000e-173 619.0
2 TraesCS1A01G407100 chr5D 94.767 1548 63 7 1770 3315 544612866 544614397 0.000000e+00 2394.0
3 TraesCS1A01G407100 chr5D 84.721 1682 172 38 1956 3604 543854880 543853251 0.000000e+00 1604.0
4 TraesCS1A01G407100 chr5D 90.154 1168 72 14 627 1757 544611636 544612797 0.000000e+00 1480.0
5 TraesCS1A01G407100 chr5D 87.484 783 84 8 1935 2706 543852480 543851701 0.000000e+00 891.0
6 TraesCS1A01G407100 chr5D 87.562 804 42 18 3155 3909 544614277 544615071 0.000000e+00 878.0
7 TraesCS1A01G407100 chr5D 86.847 555 53 9 1 545 240171334 240171878 1.870000e-168 603.0
8 TraesCS1A01G407100 chr5D 83.797 395 46 9 3533 3911 543853205 543852813 4.480000e-95 359.0
9 TraesCS1A01G407100 chr5D 90.598 234 19 3 626 858 544495051 544495282 1.650000e-79 307.0
10 TraesCS1A01G407100 chr5D 81.592 201 31 6 4379 4575 250387753 250387555 1.360000e-35 161.0
11 TraesCS1A01G407100 chr5D 89.000 100 11 0 2988 3087 543853518 543853419 1.780000e-24 124.0
12 TraesCS1A01G407100 chr4A 92.264 1577 64 31 3159 4707 624617190 624618736 0.000000e+00 2183.0
13 TraesCS1A01G407100 chr4A 89.523 1384 108 16 1939 3315 624615753 624617106 0.000000e+00 1718.0
14 TraesCS1A01G407100 chr4A 92.283 933 36 17 624 1542 624614416 624615326 0.000000e+00 1291.0
15 TraesCS1A01G407100 chr4A 88.364 1100 95 14 1953 3037 625229275 625230356 0.000000e+00 1291.0
16 TraesCS1A01G407100 chr4A 99.188 616 5 0 1 616 624613674 624614289 0.000000e+00 1110.0
17 TraesCS1A01G407100 chr4A 84.655 782 84 14 1935 2706 625232009 625232764 0.000000e+00 747.0
18 TraesCS1A01G407100 chr4A 79.599 1147 134 50 2439 3535 624272361 624273457 0.000000e+00 730.0
19 TraesCS1A01G407100 chr4A 80.392 918 114 34 3034 3907 625230776 625231671 5.140000e-179 638.0
20 TraesCS1A01G407100 chr4A 85.641 585 64 10 1935 2509 624271788 624272362 8.720000e-167 597.0
21 TraesCS1A01G407100 chr4A 82.116 397 40 8 1328 1695 292380548 292380942 1.270000e-80 311.0
22 TraesCS1A01G407100 chr4A 90.000 200 12 1 1564 1755 624615380 624615579 7.820000e-63 252.0
23 TraesCS1A01G407100 chr4A 84.028 144 23 0 3172 3315 624617163 624617306 6.350000e-29 139.0
24 TraesCS1A01G407100 chr4A 80.928 194 16 7 908 1080 625228215 625228408 2.950000e-27 134.0
25 TraesCS1A01G407100 chr4A 91.579 95 8 0 1277 1371 47218431 47218337 1.060000e-26 132.0
26 TraesCS1A01G407100 chr4A 86.667 105 14 0 2981 3085 625231080 625231184 2.980000e-22 117.0
27 TraesCS1A01G407100 chr5B 91.204 1387 99 15 1935 3315 686933284 686934653 0.000000e+00 1864.0
28 TraesCS1A01G407100 chr5B 89.423 1144 71 23 635 1752 686931993 686933112 0.000000e+00 1397.0
29 TraesCS1A01G407100 chr5B 91.081 583 30 8 635 1217 686877314 686877874 0.000000e+00 769.0
30 TraesCS1A01G407100 chr5B 91.932 471 12 9 3482 3926 686934810 686935280 1.850000e-178 636.0
31 TraesCS1A01G407100 chr5B 90.129 233 20 3 627 858 686845637 686845867 2.750000e-77 300.0
32 TraesCS1A01G407100 chr5B 90.129 233 20 3 627 858 686912972 686913202 2.750000e-77 300.0
33 TraesCS1A01G407100 chr5B 83.600 250 36 5 4322 4570 686936391 686936636 3.660000e-56 230.0
34 TraesCS1A01G407100 chr5B 87.681 138 13 4 3777 3912 686031933 686031798 1.750000e-34 158.0
35 TraesCS1A01G407100 chr5B 94.286 70 4 0 547 616 686845390 686845459 1.790000e-19 108.0
36 TraesCS1A01G407100 chr5B 94.286 70 4 0 547 616 686912726 686912795 1.790000e-19 108.0
37 TraesCS1A01G407100 chrUn 81.881 1446 158 43 1935 3315 48493323 48494729 0.000000e+00 1123.0
38 TraesCS1A01G407100 chrUn 81.935 1395 153 40 1981 3315 235108697 235110052 0.000000e+00 1088.0
39 TraesCS1A01G407100 chrUn 86.207 899 94 15 1935 2811 48466002 48466892 0.000000e+00 946.0
40 TraesCS1A01G407100 chrUn 79.495 951 127 31 1981 2898 48495544 48496459 8.660000e-172 614.0
41 TraesCS1A01G407100 chrUn 79.495 951 127 31 1981 2898 235110867 235111782 8.660000e-172 614.0
42 TraesCS1A01G407100 chr6B 91.667 564 26 14 4 547 712067176 712066614 0.000000e+00 761.0
43 TraesCS1A01G407100 chr6B 80.576 556 67 27 6 548 101244625 101244098 1.590000e-104 390.0
44 TraesCS1A01G407100 chr6B 81.800 489 47 14 1248 1695 557845044 557845531 5.750000e-99 372.0
45 TraesCS1A01G407100 chr2A 91.327 565 27 15 4 547 764687279 764686716 0.000000e+00 752.0
46 TraesCS1A01G407100 chr2A 79.518 83 12 3 4278 4356 72696360 72696279 2.000000e-03 54.7
47 TraesCS1A01G407100 chr2B 91.005 567 31 13 1 547 706400582 706401148 0.000000e+00 747.0
48 TraesCS1A01G407100 chr2B 84.283 579 54 23 1 548 516100749 516101321 8.970000e-147 531.0
49 TraesCS1A01G407100 chr2B 81.237 485 51 20 1249 1695 219708189 219708671 5.790000e-94 355.0
50 TraesCS1A01G407100 chr2B 82.234 197 29 5 4377 4569 384650628 384650822 1.050000e-36 165.0
51 TraesCS1A01G407100 chr2B 81.910 199 31 5 4380 4575 115386756 115386560 3.770000e-36 163.0
52 TraesCS1A01G407100 chr2B 81.818 77 8 3 4278 4349 111034681 111034606 5.090000e-05 60.2
53 TraesCS1A01G407100 chr6A 93.639 393 24 1 156 547 517370725 517371117 1.890000e-163 586.0
54 TraesCS1A01G407100 chr6A 79.630 108 17 3 4279 4381 491921835 491921728 6.530000e-09 73.1
55 TraesCS1A01G407100 chr3B 81.471 707 78 22 1033 1695 749818419 749817722 8.970000e-147 531.0
56 TraesCS1A01G407100 chr4B 83.038 395 37 7 1330 1695 663442415 663442808 9.760000e-87 331.0
57 TraesCS1A01G407100 chr3A 82.532 395 39 7 1330 1695 181044595 181044988 2.110000e-83 320.0
58 TraesCS1A01G407100 chr3A 86.145 166 15 3 6 170 486210594 486210436 6.260000e-39 172.0
59 TraesCS1A01G407100 chr7B 82.642 386 38 5 1330 1686 227230142 227229757 9.830000e-82 315.0
60 TraesCS1A01G407100 chr2D 82.353 204 27 8 4377 4575 316662411 316662212 8.100000e-38 169.0
61 TraesCS1A01G407100 chr6D 81.683 202 32 5 4377 4575 111470300 111470101 3.770000e-36 163.0
62 TraesCS1A01G407100 chr4D 81.373 204 30 7 4377 4575 17535080 17534880 4.880000e-35 159.0
63 TraesCS1A01G407100 chr7D 81.463 205 27 9 4370 4569 272759177 272759375 1.750000e-34 158.0
64 TraesCS1A01G407100 chr7A 94.737 95 5 0 1277 1371 695609123 695609029 1.060000e-31 148.0
65 TraesCS1A01G407100 chr7A 92.632 95 7 0 1277 1371 593555694 593555600 2.280000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G407100 chr1A 569465125 569469831 4706 True 8693.00 8693 100.000000 1 4707 1 chr1A.!!$R2 4706
1 TraesCS1A01G407100 chr1A 330752199 330752738 539 True 619.00 619 87.409000 4 548 1 chr1A.!!$R1 544
2 TraesCS1A01G407100 chr5D 544611636 544615071 3435 False 1584.00 2394 90.827667 627 3909 3 chr5D.!!$F3 3282
3 TraesCS1A01G407100 chr5D 543851701 543854880 3179 True 744.50 1604 86.250500 1935 3911 4 chr5D.!!$R2 1976
4 TraesCS1A01G407100 chr5D 240171334 240171878 544 False 603.00 603 86.847000 1 545 1 chr5D.!!$F1 544
5 TraesCS1A01G407100 chr4A 624613674 624618736 5062 False 1115.50 2183 91.214333 1 4707 6 chr4A.!!$F3 4706
6 TraesCS1A01G407100 chr4A 624271788 624273457 1669 False 663.50 730 82.620000 1935 3535 2 chr4A.!!$F2 1600
7 TraesCS1A01G407100 chr4A 625228215 625232764 4549 False 585.40 1291 84.201200 908 3907 5 chr4A.!!$F4 2999
8 TraesCS1A01G407100 chr5B 686931993 686936636 4643 False 1031.75 1864 89.039750 635 4570 4 chr5B.!!$F4 3935
9 TraesCS1A01G407100 chr5B 686877314 686877874 560 False 769.00 769 91.081000 635 1217 1 chr5B.!!$F1 582
10 TraesCS1A01G407100 chrUn 48466002 48466892 890 False 946.00 946 86.207000 1935 2811 1 chrUn.!!$F1 876
11 TraesCS1A01G407100 chrUn 48493323 48496459 3136 False 868.50 1123 80.688000 1935 3315 2 chrUn.!!$F2 1380
12 TraesCS1A01G407100 chrUn 235108697 235111782 3085 False 851.00 1088 80.715000 1981 3315 2 chrUn.!!$F3 1334
13 TraesCS1A01G407100 chr6B 712066614 712067176 562 True 761.00 761 91.667000 4 547 1 chr6B.!!$R2 543
14 TraesCS1A01G407100 chr6B 101244098 101244625 527 True 390.00 390 80.576000 6 548 1 chr6B.!!$R1 542
15 TraesCS1A01G407100 chr2A 764686716 764687279 563 True 752.00 752 91.327000 4 547 1 chr2A.!!$R2 543
16 TraesCS1A01G407100 chr2B 706400582 706401148 566 False 747.00 747 91.005000 1 547 1 chr2B.!!$F4 546
17 TraesCS1A01G407100 chr2B 516100749 516101321 572 False 531.00 531 84.283000 1 548 1 chr2B.!!$F3 547
18 TraesCS1A01G407100 chr3B 749817722 749818419 697 True 531.00 531 81.471000 1033 1695 1 chr3B.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 635 0.842030 AGCCCCAGTGATGACTTGGA 60.842 55.000 3.85 0.00 37.20 3.53 F
793 992 1.003718 AGGGGAGGAAAGAAACGCG 60.004 57.895 3.53 3.53 0.00 6.01 F
887 1102 1.075600 CACCCTCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71 F
1697 2130 1.188863 GCAAGGGGATTGAGCACATT 58.811 50.000 0.00 0.00 41.83 2.71 F
2424 2957 2.859806 GCTTCACCATGTTTGCTGTGTC 60.860 50.000 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 2018 1.755783 CTCAATCCCCTTGCAGGCC 60.756 63.158 0.0 0.0 34.66 5.19 R
2222 2748 3.576982 ACGAAGACCAATTCTCACCTGTA 59.423 43.478 0.0 0.0 31.02 2.74 R
2850 3465 6.557110 GCTACCAAAACTCAACAAGTGTAAA 58.443 36.000 0.0 0.0 38.58 2.01 R
3191 4318 0.604578 CAAACATGCCCCTGGAAGTG 59.395 55.000 0.0 0.0 0.00 3.16 R
3790 5360 1.600485 GGCGTCTTTCTTGTTTTCGGA 59.400 47.619 0.0 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
497 573 1.003223 CACATATCATGCAGCACACCG 60.003 52.381 0.00 0.00 0.00 4.94
559 635 0.842030 AGCCCCAGTGATGACTTGGA 60.842 55.000 3.85 0.00 37.20 3.53
777 976 1.188863 CCATTCCCCTTTCTTGCAGG 58.811 55.000 0.00 0.00 0.00 4.85
792 991 1.587043 GCAGGGGAGGAAAGAAACGC 61.587 60.000 0.00 0.00 0.00 4.84
793 992 1.003718 AGGGGAGGAAAGAAACGCG 60.004 57.895 3.53 3.53 0.00 6.01
794 993 2.687805 GGGGAGGAAAGAAACGCGC 61.688 63.158 5.73 0.00 0.00 6.86
795 994 2.687805 GGGAGGAAAGAAACGCGCC 61.688 63.158 5.73 0.00 0.00 6.53
796 995 2.687805 GGAGGAAAGAAACGCGCCC 61.688 63.158 5.73 0.00 0.00 6.13
797 996 2.671963 AGGAAAGAAACGCGCCCC 60.672 61.111 5.73 0.00 0.00 5.80
798 997 4.097863 GGAAAGAAACGCGCCCCG 62.098 66.667 5.73 0.00 44.21 5.73
886 1101 2.641746 CCACCCTCCTCCTCCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
887 1102 1.075600 CACCCTCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
1099 1335 2.202756 CGCTCTACCTCGGCAACC 60.203 66.667 0.00 0.00 0.00 3.77
1429 1701 2.039418 CGGGATCTCCAGATGGTAACA 58.961 52.381 0.00 0.00 46.15 2.41
1535 1810 1.272147 GGGGTCTGATTTGAGTTGGCT 60.272 52.381 0.00 0.00 0.00 4.75
1543 1838 5.412594 TCTGATTTGAGTTGGCTATGTTGAC 59.587 40.000 0.00 0.00 0.00 3.18
1594 1927 3.037431 ACTCTGCTCATGTGAAGTGAC 57.963 47.619 10.96 0.00 0.00 3.67
1636 1981 5.619757 CGAGTCTGGTACATGTAAAACGGTA 60.620 44.000 7.25 0.00 38.20 4.02
1640 1985 3.995705 TGGTACATGTAAAACGGTACTGC 59.004 43.478 7.25 0.00 34.20 4.40
1652 1997 3.945346 ACGGTACTGCCATTGTCATTTA 58.055 40.909 0.23 0.00 36.97 1.40
1673 2018 9.874215 CATTTATGAGCATATTCTGTAACTGTG 57.126 33.333 0.00 0.00 0.00 3.66
1697 2130 1.188863 GCAAGGGGATTGAGCACATT 58.811 50.000 0.00 0.00 41.83 2.71
1933 2426 3.391296 ACTGGTCGCCATTATGTATTCCT 59.609 43.478 0.00 0.00 30.82 3.36
2034 2541 6.090358 CAGCTTATTTGCTTTGAATCTGTTGG 59.910 38.462 0.00 0.00 41.98 3.77
2038 2545 4.339872 TTGCTTTGAATCTGTTGGCATT 57.660 36.364 0.00 0.00 0.00 3.56
2056 2567 6.734137 TGGCATTAGTCACAAGTACTTTTTG 58.266 36.000 5.07 6.52 0.00 2.44
2125 2636 7.521748 GCTGATGCTGAGCAAGTTATATCATTT 60.522 37.037 12.69 0.00 43.62 2.32
2424 2957 2.859806 GCTTCACCATGTTTGCTGTGTC 60.860 50.000 0.00 0.00 0.00 3.67
2499 3109 8.997621 TGTTACTGACTTATCCTTCATGTAAC 57.002 34.615 0.00 0.00 37.16 2.50
2986 3616 5.242393 CCATATGGCTTCACCTATTTTCAGG 59.758 44.000 9.29 0.00 41.87 3.86
3144 4271 7.560991 TGATTGGATTGCTATGTCCATAGTTTT 59.439 33.333 14.13 1.84 43.61 2.43
3152 4279 8.630054 TGCTATGTCCATAGTTTTGTTTTAGT 57.370 30.769 14.13 0.00 42.07 2.24
3153 4280 9.727859 TGCTATGTCCATAGTTTTGTTTTAGTA 57.272 29.630 14.13 0.00 42.07 1.82
3169 4296 6.874664 TGTTTTAGTATTCGAGTGGCATGTTA 59.125 34.615 0.00 0.00 0.00 2.41
3170 4297 7.551262 TGTTTTAGTATTCGAGTGGCATGTTAT 59.449 33.333 0.00 0.00 0.00 1.89
3182 4309 5.294306 AGTGGCATGTTATTATGACTGAACG 59.706 40.000 0.00 0.00 36.99 3.95
3200 4327 3.107642 ACGTAGTTTCACACTTCCAGG 57.892 47.619 0.00 0.00 37.78 4.45
3209 4336 0.188342 ACACTTCCAGGGGCATGTTT 59.812 50.000 0.00 0.00 0.00 2.83
3335 4705 9.219603 CAGACTAAACATTTTCTATGTTCCAGA 57.780 33.333 14.20 0.00 40.94 3.86
3348 4738 8.693120 TCTATGTTCCAGAGGTAGTTAGTATG 57.307 38.462 0.00 0.00 0.00 2.39
3366 4765 3.652057 ATGGGCATACTGCTAGTGTTT 57.348 42.857 0.00 0.00 44.28 2.83
3368 4767 4.561500 TGGGCATACTGCTAGTGTTTTA 57.438 40.909 0.00 0.00 44.28 1.52
3373 4789 7.162082 GGGCATACTGCTAGTGTTTTATATCT 58.838 38.462 0.00 0.00 44.28 1.98
3412 4832 8.925161 TTCTTTACATTTTTCTGAGTTTGGTG 57.075 30.769 0.00 0.00 0.00 4.17
3421 4843 1.008538 GAGTTTGGTGGCACTTGCG 60.009 57.895 18.45 0.00 43.26 4.85
3435 4857 3.571571 CACTTGCGTAACACTAGCTGTA 58.428 45.455 0.00 0.00 30.51 2.74
3441 4863 4.387559 TGCGTAACACTAGCTGTACATTTG 59.612 41.667 0.00 0.00 30.51 2.32
3443 4865 5.220228 GCGTAACACTAGCTGTACATTTGAG 60.220 44.000 0.00 0.00 30.51 3.02
3790 5360 4.381411 GCTTAGTTTCTAGCATTCCCGAT 58.619 43.478 0.00 0.00 37.35 4.18
3842 5413 9.248291 CTACTGTGAATTATTTGTGCACTTTTT 57.752 29.630 19.41 3.25 0.00 1.94
4146 5763 0.841158 TGGAACACATACCGGGGGAA 60.841 55.000 6.32 0.00 0.00 3.97
4161 5778 2.338785 GGAACTGCAAGCCAGGCTC 61.339 63.158 16.53 3.34 46.14 4.70
4287 6650 3.397849 AGGTTACCTCGAAGTTTGACC 57.602 47.619 0.00 0.00 0.00 4.02
4288 6651 2.701951 AGGTTACCTCGAAGTTTGACCA 59.298 45.455 0.00 0.00 0.00 4.02
4641 7858 1.145598 CAGCTGTCGGATGCCATCT 59.854 57.895 5.25 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
497 573 6.509997 GCAAAAATGAGGTGAAATGTGTGTTC 60.510 38.462 0.00 0.00 0.00 3.18
559 635 2.359602 AGCTGCTCGTGCTTGCAT 60.360 55.556 22.29 10.40 40.01 3.96
777 976 2.687805 GGCGCGTTTCTTTCCTCCC 61.688 63.158 8.43 0.00 0.00 4.30
778 977 2.687805 GGGCGCGTTTCTTTCCTCC 61.688 63.158 8.43 0.00 0.00 4.30
847 1062 1.373812 GTGTTAAGTGGGTCGGGCT 59.626 57.895 0.00 0.00 0.00 5.19
886 1101 0.402861 GGTGGGGAATAGGGGATGGA 60.403 60.000 0.00 0.00 0.00 3.41
887 1102 1.435346 GGGTGGGGAATAGGGGATGG 61.435 65.000 0.00 0.00 0.00 3.51
1099 1335 1.130749 CTCGACGTTGTAGAGGGTCTG 59.869 57.143 1.96 0.00 32.93 3.51
1429 1701 2.593026 GAGGGATCGAGACAGGAGAAT 58.407 52.381 0.00 0.00 0.00 2.40
1527 1802 4.937620 TCAGAATGTCAACATAGCCAACTC 59.062 41.667 0.00 0.00 35.10 3.01
1535 1810 6.371548 GGCTACACTTTCAGAATGTCAACATA 59.628 38.462 0.00 0.00 35.10 2.29
1543 1838 6.992063 AATACAGGCTACACTTTCAGAATG 57.008 37.500 0.00 0.00 37.54 2.67
1594 1927 3.126831 CTCGGTCCAAATTGCTAGCTAG 58.873 50.000 16.84 16.84 0.00 3.42
1636 1981 4.018490 TGCTCATAAATGACAATGGCAGT 58.982 39.130 0.00 0.00 32.50 4.40
1640 1985 8.573885 ACAGAATATGCTCATAAATGACAATGG 58.426 33.333 0.00 0.00 32.50 3.16
1652 1997 4.818546 GCCACAGTTACAGAATATGCTCAT 59.181 41.667 0.00 0.00 0.00 2.90
1673 2018 1.755783 CTCAATCCCCTTGCAGGCC 60.756 63.158 0.00 0.00 34.66 5.19
1933 2426 8.980610 CAAATGAGTTGAAATGCTTATTGACAA 58.019 29.630 0.00 0.00 39.87 3.18
2011 2509 5.163923 GCCAACAGATTCAAAGCAAATAAGC 60.164 40.000 0.00 0.00 0.00 3.09
2056 2567 5.707411 GGCAACAAATAATGATGAAGCAC 57.293 39.130 0.00 0.00 33.90 4.40
2222 2748 3.576982 ACGAAGACCAATTCTCACCTGTA 59.423 43.478 0.00 0.00 31.02 2.74
2850 3465 6.557110 GCTACCAAAACTCAACAAGTGTAAA 58.443 36.000 0.00 0.00 38.58 2.01
2956 3571 2.582636 AGGTGAAGCCATATGGAAACCT 59.417 45.455 26.47 24.09 40.61 3.50
2986 3616 4.098196 CCTCTACTAACTACCACTGGAAGC 59.902 50.000 0.71 0.00 37.60 3.86
3144 4271 5.242434 ACATGCCACTCGAATACTAAAACA 58.758 37.500 0.00 0.00 0.00 2.83
3152 4279 7.384932 CAGTCATAATAACATGCCACTCGAATA 59.615 37.037 0.00 0.00 0.00 1.75
3153 4280 6.203530 CAGTCATAATAACATGCCACTCGAAT 59.796 38.462 0.00 0.00 0.00 3.34
3157 4284 6.510157 CGTTCAGTCATAATAACATGCCACTC 60.510 42.308 0.00 0.00 0.00 3.51
3169 4296 7.152645 AGTGTGAAACTACGTTCAGTCATAAT 58.847 34.615 0.00 0.00 38.17 1.28
3170 4297 6.509656 AGTGTGAAACTACGTTCAGTCATAA 58.490 36.000 0.00 0.00 38.17 1.90
3182 4309 2.779506 CCCCTGGAAGTGTGAAACTAC 58.220 52.381 0.00 0.00 38.56 2.73
3191 4318 0.604578 CAAACATGCCCCTGGAAGTG 59.395 55.000 0.00 0.00 0.00 3.16
3200 4327 3.505680 TGTTCAGTCATACAAACATGCCC 59.494 43.478 0.00 0.00 0.00 5.36
3237 4364 5.612725 TCAGTCATATGAACATAGCACCA 57.387 39.130 7.07 0.00 0.00 4.17
3238 4365 8.783833 ATATTCAGTCATATGAACATAGCACC 57.216 34.615 7.07 0.00 41.76 5.01
3276 4602 6.469782 TCAGTCATATGAACATAGCACTGA 57.530 37.500 21.63 21.63 40.23 3.41
3307 4676 8.999431 TGGAACATAGAAAATGTTTAGTCTGAC 58.001 33.333 0.00 0.00 41.76 3.51
3317 4686 7.259088 ACTACCTCTGGAACATAGAAAATGT 57.741 36.000 0.00 0.00 38.20 2.71
3386 4802 9.364989 CACCAAACTCAGAAAAATGTAAAGAAA 57.635 29.630 0.00 0.00 0.00 2.52
3393 4809 3.450457 TGCCACCAAACTCAGAAAAATGT 59.550 39.130 0.00 0.00 0.00 2.71
3395 4811 3.706086 AGTGCCACCAAACTCAGAAAAAT 59.294 39.130 0.00 0.00 0.00 1.82
3400 4820 1.679139 CAAGTGCCACCAAACTCAGA 58.321 50.000 0.00 0.00 0.00 3.27
3421 4843 7.653767 AACTCAAATGTACAGCTAGTGTTAC 57.346 36.000 0.33 0.00 40.94 2.50
3441 4863 8.349983 TCAGGTGCTCTAAAATTAAACAAACTC 58.650 33.333 0.00 0.00 0.00 3.01
3443 4865 9.476202 AATCAGGTGCTCTAAAATTAAACAAAC 57.524 29.630 0.00 0.00 0.00 2.93
3790 5360 1.600485 GGCGTCTTTCTTGTTTTCGGA 59.400 47.619 0.00 0.00 0.00 4.55
3842 5413 2.965831 AGTAGCTGACAGGTTCACTTGA 59.034 45.455 13.22 0.00 0.00 3.02
4146 5763 2.363292 AAAGGAGCCTGGCTTGCAGT 62.363 55.000 24.26 4.83 39.88 4.40
4161 5778 1.675641 CCACGAAGAGGCCCAAAGG 60.676 63.158 0.00 0.00 0.00 3.11
4416 7135 9.095065 TCAGAGTTTACTAACTTTGACTTCAAC 57.905 33.333 7.05 0.00 45.37 3.18
4641 7858 1.872388 TTGATCGAACGGCTGTTTCA 58.128 45.000 13.23 9.74 38.78 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.