Multiple sequence alignment - TraesCS1A01G406000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G406000 chr1A 100.000 3794 0 0 1 3794 568695506 568699299 0.000000e+00 7007.0
1 TraesCS1A01G406000 chr1D 89.487 2007 148 29 1751 3729 474353438 474355409 0.000000e+00 2479.0
2 TraesCS1A01G406000 chr1D 90.065 765 71 3 880 1643 474352627 474353387 0.000000e+00 987.0
3 TraesCS1A01G406000 chr1D 89.916 238 24 0 3265 3502 215863286 215863523 1.320000e-79 307.0
4 TraesCS1A01G406000 chr1D 71.117 412 106 13 448 852 365224096 365223691 5.220000e-14 89.8
5 TraesCS1A01G406000 chrUn 92.123 1460 86 13 1719 3168 8516577 8518017 0.000000e+00 2032.0
6 TraesCS1A01G406000 chrUn 88.497 1304 124 15 1730 3017 8534691 8535984 0.000000e+00 1554.0
7 TraesCS1A01G406000 chrUn 90.978 787 62 4 880 1661 8515792 8516574 0.000000e+00 1051.0
8 TraesCS1A01G406000 chrUn 89.325 815 65 9 847 1643 8533856 8534666 0.000000e+00 1003.0
9 TraesCS1A01G406000 chrUn 76.383 1012 197 30 1761 2752 26258550 26259539 1.220000e-139 507.0
10 TraesCS1A01G406000 chrUn 85.761 309 38 5 1017 1322 26244863 26245168 4.730000e-84 322.0
11 TraesCS1A01G406000 chrUn 91.556 225 19 0 3278 3502 223002330 223002106 1.020000e-80 311.0
12 TraesCS1A01G406000 chrUn 88.961 154 16 1 3035 3187 8536256 8536409 5.000000e-44 189.0
13 TraesCS1A01G406000 chr7B 92.742 868 60 3 1 866 612877552 612876686 0.000000e+00 1251.0
14 TraesCS1A01G406000 chr5B 92.618 867 61 3 1 866 637839284 637838420 0.000000e+00 1243.0
15 TraesCS1A01G406000 chr5B 91.284 436 38 0 267 702 456592419 456591984 2.520000e-166 595.0
16 TraesCS1A01G406000 chr5B 89.513 267 27 1 5 271 456620201 456619936 1.690000e-88 337.0
17 TraesCS1A01G406000 chr5B 93.491 169 10 1 699 866 456585882 456585714 2.260000e-62 250.0
18 TraesCS1A01G406000 chr5B 73.711 388 94 7 452 836 403922338 403922720 1.100000e-30 145.0
19 TraesCS1A01G406000 chr2B 88.413 863 100 0 1 863 636781615 636782477 0.000000e+00 1040.0
20 TraesCS1A01G406000 chr2B 75.588 1020 195 39 1763 2752 661445830 661446825 4.470000e-124 455.0
21 TraesCS1A01G406000 chr2B 86.364 308 38 4 1017 1322 661191868 661192173 2.180000e-87 333.0
22 TraesCS1A01G406000 chr2B 90.129 233 23 0 3270 3502 49080617 49080385 1.710000e-78 303.0
23 TraesCS1A01G406000 chr2B 72.000 375 96 9 244 613 786056581 786056211 6.700000e-18 102.0
24 TraesCS1A01G406000 chr5D 78.754 626 123 9 245 865 508164783 508165403 9.810000e-111 411.0
25 TraesCS1A01G406000 chr3D 91.525 236 20 0 3267 3502 417156491 417156726 3.650000e-85 326.0
26 TraesCS1A01G406000 chr3D 92.000 225 18 0 3278 3502 29528912 29528688 2.200000e-82 316.0
27 TraesCS1A01G406000 chr3D 91.556 225 19 0 3278 3502 29493983 29493759 1.020000e-80 311.0
28 TraesCS1A01G406000 chr3D 89.583 48 5 0 1661 1708 126949042 126949089 1.140000e-05 62.1
29 TraesCS1A01G406000 chr6B 88.278 273 23 8 3238 3502 671720396 671720125 6.120000e-83 318.0
30 TraesCS1A01G406000 chr6B 86.154 65 9 0 674 738 618146191 618146255 1.890000e-08 71.3
31 TraesCS1A01G406000 chr3B 84.665 313 28 13 3229 3524 418718101 418717792 1.030000e-75 294.0
32 TraesCS1A01G406000 chr3B 89.583 48 5 0 1661 1708 181288807 181288854 1.140000e-05 62.1
33 TraesCS1A01G406000 chr2A 84.142 309 43 5 1017 1322 694864590 694864895 1.030000e-75 294.0
34 TraesCS1A01G406000 chr2A 89.583 48 3 2 1663 1709 182009051 182009005 4.090000e-05 60.2
35 TraesCS1A01G406000 chr3A 77.207 487 96 15 382 861 710802621 710802143 1.740000e-68 270.0
36 TraesCS1A01G406000 chr3A 91.111 45 4 0 1664 1708 137579559 137579603 1.140000e-05 62.1
37 TraesCS1A01G406000 chr1B 72.387 507 124 15 364 862 318989380 318989878 3.050000e-31 147.0
38 TraesCS1A01G406000 chr1B 90.000 50 5 0 1660 1709 597156800 597156849 8.800000e-07 65.8
39 TraesCS1A01G406000 chr4D 70.573 384 101 12 451 828 8936833 8936456 5.260000e-09 73.1
40 TraesCS1A01G406000 chr6D 91.489 47 4 0 1662 1708 343295807 343295761 8.800000e-07 65.8
41 TraesCS1A01G406000 chr4B 88.235 51 5 1 1661 1710 83310530 83310580 4.090000e-05 60.2
42 TraesCS1A01G406000 chr4A 88.235 51 5 1 1661 1710 540419407 540419357 4.090000e-05 60.2
43 TraesCS1A01G406000 chr2D 89.583 48 3 2 1663 1709 168425990 168426036 4.090000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G406000 chr1A 568695506 568699299 3793 False 7007.000000 7007 100.000000 1 3794 1 chr1A.!!$F1 3793
1 TraesCS1A01G406000 chr1D 474352627 474355409 2782 False 1733.000000 2479 89.776000 880 3729 2 chr1D.!!$F2 2849
2 TraesCS1A01G406000 chrUn 8515792 8518017 2225 False 1541.500000 2032 91.550500 880 3168 2 chrUn.!!$F3 2288
3 TraesCS1A01G406000 chrUn 8533856 8536409 2553 False 915.333333 1554 88.927667 847 3187 3 chrUn.!!$F4 2340
4 TraesCS1A01G406000 chrUn 26258550 26259539 989 False 507.000000 507 76.383000 1761 2752 1 chrUn.!!$F2 991
5 TraesCS1A01G406000 chr7B 612876686 612877552 866 True 1251.000000 1251 92.742000 1 866 1 chr7B.!!$R1 865
6 TraesCS1A01G406000 chr5B 637838420 637839284 864 True 1243.000000 1243 92.618000 1 866 1 chr5B.!!$R4 865
7 TraesCS1A01G406000 chr2B 636781615 636782477 862 False 1040.000000 1040 88.413000 1 863 1 chr2B.!!$F1 862
8 TraesCS1A01G406000 chr2B 661445830 661446825 995 False 455.000000 455 75.588000 1763 2752 1 chr2B.!!$F3 989
9 TraesCS1A01G406000 chr5D 508164783 508165403 620 False 411.000000 411 78.754000 245 865 1 chr5D.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.528924 TTCCGTCGATGTTCCATCGT 59.471 50.0 21.73 0.00 41.77 3.73 F
1068 1090 0.263172 TGGACAAGGAAAGGGCCAAA 59.737 50.0 6.18 0.00 0.00 3.28 F
1317 1339 0.250381 AGGTCAGAGTCGACGACACT 60.250 55.0 28.31 24.23 36.73 3.55 F
1947 1987 0.542938 AGGCTGAGCACTCACTGGTA 60.543 55.0 6.82 0.00 35.46 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1339 0.247185 CGTAAACCTCCCGGTGCTTA 59.753 55.0 0.0 0.0 44.73 3.09 R
2182 2222 0.310854 CCAAAGAAGGGCGTCAACAC 59.689 55.0 0.0 0.0 0.00 3.32 R
2691 2757 0.326264 CCAGGGCAGCTTTGAGTAGT 59.674 55.0 0.0 0.0 0.00 2.73 R
3570 3904 0.178935 TGGGCTTTCTTTTCCAGGGG 60.179 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 2.187946 CACTCGCTGGGGTGGATC 59.812 66.667 5.75 0.00 0.00 3.36
139 140 3.157881 ACAAGAGAAGTGATCGGTCTCA 58.842 45.455 17.51 0.00 40.26 3.27
140 141 3.574396 ACAAGAGAAGTGATCGGTCTCAA 59.426 43.478 17.51 0.00 40.26 3.02
150 151 0.534203 TCGGTCTCAACAAACCTGCC 60.534 55.000 0.00 0.00 33.14 4.85
196 197 0.528924 TTCCGTCGATGTTCCATCGT 59.471 50.000 21.73 0.00 41.77 3.73
213 214 2.204237 TCGTCAATTCTGCGGATGATG 58.796 47.619 10.84 10.84 0.00 3.07
386 387 2.706190 AGGCCTGTCTTGACAGTAAAGT 59.294 45.455 23.81 6.36 36.06 2.66
447 448 4.443315 CCAAGGTTCTTTGGTTGCAGAATT 60.443 41.667 5.68 0.00 42.16 2.17
509 510 2.201210 CCCCCACCAAAACTGCCT 59.799 61.111 0.00 0.00 0.00 4.75
572 573 6.888632 AGTCTAAAGCATGACATGGAGAAAAT 59.111 34.615 17.03 0.00 35.81 1.82
615 616 6.935167 TGCTTTAATGAGAATTTCTTTCCCC 58.065 36.000 0.00 0.00 34.67 4.81
618 619 2.577606 TGAGAATTTCTTTCCCCGCA 57.422 45.000 0.00 0.00 34.67 5.69
619 620 2.870175 TGAGAATTTCTTTCCCCGCAA 58.130 42.857 0.00 0.00 34.67 4.85
627 628 1.025041 CTTTCCCCGCAAAGGATAGC 58.975 55.000 0.00 0.00 45.00 2.97
684 686 7.832187 CACACCCTGTCCCTTAGATATTTAAAA 59.168 37.037 0.00 0.00 0.00 1.52
702 704 2.524569 AAGTGCCGTTTTTGGATTGG 57.475 45.000 0.00 0.00 0.00 3.16
798 800 1.899437 CTCTTAGGGCAGTCGGGCAA 61.899 60.000 0.00 0.00 45.66 4.52
936 951 3.307906 CCGGTGACCTTCCCACGA 61.308 66.667 0.00 0.00 35.48 4.35
973 995 4.855715 TCCAAGACTAGACACTCAACAG 57.144 45.455 0.00 0.00 0.00 3.16
1011 1033 0.620030 CCTCCACCATGTCCATGTCA 59.380 55.000 6.53 0.00 37.11 3.58
1035 1057 1.149987 GAGTAGAGCCGACGATCGAT 58.850 55.000 24.34 5.96 43.74 3.59
1059 1081 2.721425 AGGTTTTCGTGGACAAGGAA 57.279 45.000 0.00 0.00 0.00 3.36
1064 1086 0.536460 TTCGTGGACAAGGAAAGGGC 60.536 55.000 0.00 0.00 29.89 5.19
1068 1090 0.263172 TGGACAAGGAAAGGGCCAAA 59.737 50.000 6.18 0.00 0.00 3.28
1134 1156 3.965539 CTTCCTCACGCTGCCCCTG 62.966 68.421 0.00 0.00 0.00 4.45
1170 1192 3.842923 CTCGGCGGGCAGTCTCAT 61.843 66.667 7.21 0.00 0.00 2.90
1222 1244 3.966930 GAGGGGCTCTCCACCGACT 62.967 68.421 1.89 0.00 35.98 4.18
1237 1259 1.009389 CGACTTGTTCAGGACCGAGC 61.009 60.000 0.00 0.00 0.00 5.03
1295 1317 3.496898 CGAAGCAGTGCTGTCAGTA 57.503 52.632 20.55 0.00 39.62 2.74
1317 1339 0.250381 AGGTCAGAGTCGACGACACT 60.250 55.000 28.31 24.23 36.73 3.55
1447 1469 1.066587 GAGAGGCCGGAGAATCGTG 59.933 63.158 5.05 0.00 34.37 4.35
1474 1496 4.320456 CTGCCGGTGGTGCTCACT 62.320 66.667 1.90 0.00 45.38 3.41
1475 1497 4.314440 TGCCGGTGGTGCTCACTC 62.314 66.667 1.90 1.71 45.38 3.51
1476 1498 4.314440 GCCGGTGGTGCTCACTCA 62.314 66.667 1.90 0.00 45.38 3.41
1513 1538 3.318839 TGTCAAAGGAGGCATGAAGTTTG 59.681 43.478 0.00 0.00 0.00 2.93
1563 1588 2.016096 GCCTCAACTTCCCTCATGCTC 61.016 57.143 0.00 0.00 0.00 4.26
1596 1621 2.783135 GAGTTTCAAGTGCCAGATCCA 58.217 47.619 0.00 0.00 0.00 3.41
1622 1647 1.753649 TCTTGAGCAGAGGATTCTCCG 59.246 52.381 0.00 0.00 42.75 4.63
1662 1687 6.540551 AGGTTTTTCTCTCTCAAGTTCTCAAC 59.459 38.462 0.00 0.00 0.00 3.18
1665 1690 9.267084 GTTTTTCTCTCTCAAGTTCTCAACTAT 57.733 33.333 0.00 0.00 41.91 2.12
1668 1693 9.915629 TTTCTCTCTCAAGTTCTCAACTATTAC 57.084 33.333 0.00 0.00 41.91 1.89
1669 1694 8.057536 TCTCTCTCAAGTTCTCAACTATTACC 57.942 38.462 0.00 0.00 41.91 2.85
1670 1695 7.891183 TCTCTCTCAAGTTCTCAACTATTACCT 59.109 37.037 0.00 0.00 41.91 3.08
1671 1696 8.057536 TCTCTCAAGTTCTCAACTATTACCTC 57.942 38.462 0.00 0.00 41.91 3.85
1672 1697 7.891183 TCTCTCAAGTTCTCAACTATTACCTCT 59.109 37.037 0.00 0.00 41.91 3.69
1673 1698 9.179909 CTCTCAAGTTCTCAACTATTACCTCTA 57.820 37.037 0.00 0.00 41.91 2.43
1674 1699 9.702253 TCTCAAGTTCTCAACTATTACCTCTAT 57.298 33.333 0.00 0.00 41.91 1.98
1699 1724 9.935682 ATACATGAATATAAGACGTTTTTGCAG 57.064 29.630 0.00 0.00 0.00 4.41
1700 1725 7.816640 ACATGAATATAAGACGTTTTTGCAGT 58.183 30.769 0.00 0.00 0.00 4.40
1701 1726 8.296713 ACATGAATATAAGACGTTTTTGCAGTT 58.703 29.630 0.00 0.00 0.00 3.16
1702 1727 8.788813 CATGAATATAAGACGTTTTTGCAGTTC 58.211 33.333 0.00 0.00 0.00 3.01
1703 1728 7.866729 TGAATATAAGACGTTTTTGCAGTTCA 58.133 30.769 0.00 0.00 0.00 3.18
1704 1729 8.346300 TGAATATAAGACGTTTTTGCAGTTCAA 58.654 29.630 0.00 0.00 0.00 2.69
1705 1730 9.341899 GAATATAAGACGTTTTTGCAGTTCAAT 57.658 29.630 0.00 0.00 34.12 2.57
1706 1731 9.691362 AATATAAGACGTTTTTGCAGTTCAATT 57.309 25.926 0.00 0.00 34.12 2.32
1707 1732 9.691362 ATATAAGACGTTTTTGCAGTTCAATTT 57.309 25.926 0.00 0.00 34.12 1.82
1709 1734 9.691362 ATAAGACGTTTTTGCAGTTCAATTTAT 57.309 25.926 0.00 0.00 34.12 1.40
1711 1736 8.728088 AGACGTTTTTGCAGTTCAATTTATAG 57.272 30.769 0.00 0.00 34.12 1.31
1712 1737 8.564574 AGACGTTTTTGCAGTTCAATTTATAGA 58.435 29.630 0.00 0.00 34.12 1.98
1713 1738 8.728088 ACGTTTTTGCAGTTCAATTTATAGAG 57.272 30.769 0.00 0.00 34.12 2.43
1714 1739 7.807907 ACGTTTTTGCAGTTCAATTTATAGAGG 59.192 33.333 0.00 0.00 34.12 3.69
1715 1740 7.273381 CGTTTTTGCAGTTCAATTTATAGAGGG 59.727 37.037 0.00 0.00 34.12 4.30
1716 1741 8.303876 GTTTTTGCAGTTCAATTTATAGAGGGA 58.696 33.333 0.00 0.00 34.12 4.20
1717 1742 7.630242 TTTGCAGTTCAATTTATAGAGGGAG 57.370 36.000 0.00 0.00 34.12 4.30
1718 1743 6.313519 TGCAGTTCAATTTATAGAGGGAGT 57.686 37.500 0.00 0.00 0.00 3.85
1719 1744 7.432148 TGCAGTTCAATTTATAGAGGGAGTA 57.568 36.000 0.00 0.00 0.00 2.59
1720 1745 7.857456 TGCAGTTCAATTTATAGAGGGAGTAA 58.143 34.615 0.00 0.00 0.00 2.24
1721 1746 7.769044 TGCAGTTCAATTTATAGAGGGAGTAAC 59.231 37.037 0.00 0.00 0.00 2.50
1749 1774 3.002656 AGTTTGAGCATTATGCCGAATCG 59.997 43.478 14.10 0.00 46.52 3.34
1773 1807 8.649841 TCGTGCAACATACACTATTTAACTTAC 58.350 33.333 0.00 0.00 35.74 2.34
1821 1855 3.902881 CTGCTCAGGAGGTCATTAACT 57.097 47.619 0.00 0.00 0.00 2.24
1860 1900 1.132643 GGTCACTATCTTGACGTCGCT 59.867 52.381 11.62 0.00 45.95 4.93
1906 1946 3.643792 GGATATGCTCCCTGAGTACTTGT 59.356 47.826 0.00 0.00 38.19 3.16
1947 1987 0.542938 AGGCTGAGCACTCACTGGTA 60.543 55.000 6.82 0.00 35.46 3.25
2182 2222 3.012518 CAGAACTTGCTATTGTCCCCAG 58.987 50.000 0.00 0.00 0.00 4.45
2188 2228 1.702401 TGCTATTGTCCCCAGTGTTGA 59.298 47.619 0.00 0.00 0.00 3.18
2306 2346 1.944024 TCGTGGTTTTGCGAATCTTGT 59.056 42.857 0.00 0.00 33.96 3.16
2445 2503 2.802816 CGGAGGAGCATATGTAAAGCAC 59.197 50.000 4.29 0.00 0.00 4.40
2536 2594 4.893608 AGTTGTTGTTGAAGCCAAACTTT 58.106 34.783 0.00 0.00 39.29 2.66
2600 2658 4.202673 ACCCCAGGTTGTTATTTCTGTCAT 60.203 41.667 0.00 0.00 27.29 3.06
2672 2738 2.028020 ACCAGCTCTAGGTGTTGCTAAC 60.028 50.000 8.26 0.00 41.60 2.34
2691 2757 6.547880 TGCTAACTTTTGAACAGGTTATGGAA 59.452 34.615 0.00 0.00 0.00 3.53
2707 2773 1.271379 TGGAACTACTCAAAGCTGCCC 60.271 52.381 0.00 0.00 0.00 5.36
2821 2893 4.422506 CAACGTTGCTGCTTAGCG 57.577 55.556 16.51 0.00 37.69 4.26
2893 2965 4.557895 CGTAATGGTTGGTCTTTTGGGTTC 60.558 45.833 0.00 0.00 0.00 3.62
2934 3009 7.977904 TGTTGCTATTGTGATTGTTATCTCAG 58.022 34.615 0.00 0.00 36.11 3.35
2953 3028 4.620723 TCAGTAGGGTGGTCTGTATTCAT 58.379 43.478 0.00 0.00 0.00 2.57
2970 3048 8.506168 TGTATTCATAGTTCACTTGGATTTCC 57.494 34.615 0.00 0.00 0.00 3.13
2978 3056 3.831323 TCACTTGGATTTCCTTGCTTGA 58.169 40.909 0.00 0.00 36.82 3.02
2983 3061 5.474876 ACTTGGATTTCCTTGCTTGACTAAG 59.525 40.000 0.00 0.00 36.82 2.18
3025 3103 1.077429 GGGCTTCTAGGGTGCAAGG 60.077 63.158 0.00 0.00 0.00 3.61
3027 3105 1.002134 GCTTCTAGGGTGCAAGGCA 60.002 57.895 0.00 0.00 35.60 4.75
3063 3395 4.968626 TGTTTACTGCATTGCTCATAACG 58.031 39.130 10.49 0.00 0.00 3.18
3100 3434 5.768662 CCGGTTCTCTACTACATCCTTCATA 59.231 44.000 0.00 0.00 0.00 2.15
3236 3570 8.846211 TCTTTCGAGTAAATGAAATTGTTTCCT 58.154 29.630 0.47 0.00 36.10 3.36
3397 3731 9.988815 GGTATCAATCTCTGCTAGAAGAAATAA 57.011 33.333 1.01 0.00 37.89 1.40
3414 3748 7.681939 AGAAATAATACAAAGACTTCGGCAA 57.318 32.000 0.00 0.00 0.00 4.52
3421 3755 0.108585 AAGACTTCGGCAAAGAGGCA 59.891 50.000 5.20 0.00 44.47 4.75
3451 3785 1.195448 CTGGAGCAACGATGTTGTCAC 59.805 52.381 10.96 3.24 0.00 3.67
3459 3793 4.319766 GCAACGATGTTGTCACTCTTTCAT 60.320 41.667 10.96 0.00 0.00 2.57
3460 3794 5.107104 GCAACGATGTTGTCACTCTTTCATA 60.107 40.000 10.96 0.00 0.00 2.15
3473 3807 5.061684 CACTCTTTCATACGCACGAACATTA 59.938 40.000 0.00 0.00 0.00 1.90
3539 3873 2.094390 GCATTGCTTTGATCAGCTTCCA 60.094 45.455 8.27 0.00 40.79 3.53
3540 3874 3.508762 CATTGCTTTGATCAGCTTCCAC 58.491 45.455 8.27 0.00 40.79 4.02
3543 3877 0.449388 CTTTGATCAGCTTCCACCGC 59.551 55.000 0.00 0.00 0.00 5.68
3544 3878 1.298157 TTTGATCAGCTTCCACCGCG 61.298 55.000 0.00 0.00 0.00 6.46
3545 3879 2.166130 TTGATCAGCTTCCACCGCGA 62.166 55.000 8.23 0.00 0.00 5.87
3546 3880 2.125512 ATCAGCTTCCACCGCGAC 60.126 61.111 8.23 0.00 0.00 5.19
3547 3881 3.665675 ATCAGCTTCCACCGCGACC 62.666 63.158 8.23 0.00 0.00 4.79
3555 3889 4.939368 CACCGCGACCCCCAAACA 62.939 66.667 8.23 0.00 0.00 2.83
3556 3890 3.961414 ACCGCGACCCCCAAACAT 61.961 61.111 8.23 0.00 0.00 2.71
3557 3891 3.131478 CCGCGACCCCCAAACATC 61.131 66.667 8.23 0.00 0.00 3.06
3558 3892 2.359354 CGCGACCCCCAAACATCA 60.359 61.111 0.00 0.00 0.00 3.07
3559 3893 2.686816 CGCGACCCCCAAACATCAC 61.687 63.158 0.00 0.00 0.00 3.06
3560 3894 1.303317 GCGACCCCCAAACATCACT 60.303 57.895 0.00 0.00 0.00 3.41
3561 3895 0.035820 GCGACCCCCAAACATCACTA 60.036 55.000 0.00 0.00 0.00 2.74
3562 3896 1.408266 GCGACCCCCAAACATCACTAT 60.408 52.381 0.00 0.00 0.00 2.12
3563 3897 2.158871 GCGACCCCCAAACATCACTATA 60.159 50.000 0.00 0.00 0.00 1.31
3564 3898 3.496160 GCGACCCCCAAACATCACTATAT 60.496 47.826 0.00 0.00 0.00 0.86
3565 3899 4.262721 GCGACCCCCAAACATCACTATATA 60.263 45.833 0.00 0.00 0.00 0.86
3566 3900 5.570844 GCGACCCCCAAACATCACTATATAT 60.571 44.000 0.00 0.00 0.00 0.86
3567 3901 6.351541 GCGACCCCCAAACATCACTATATATA 60.352 42.308 0.00 0.00 0.00 0.86
3568 3902 7.265673 CGACCCCCAAACATCACTATATATAG 58.734 42.308 16.73 16.73 36.46 1.31
3569 3903 7.510675 ACCCCCAAACATCACTATATATAGG 57.489 40.000 21.20 11.72 34.69 2.57
3570 3904 6.069615 ACCCCCAAACATCACTATATATAGGC 60.070 42.308 21.20 0.00 34.69 3.93
3571 3905 6.357367 CCCCAAACATCACTATATATAGGCC 58.643 44.000 21.20 0.00 34.69 5.19
3572 3906 6.357367 CCCAAACATCACTATATATAGGCCC 58.643 44.000 21.20 0.00 34.69 5.80
3573 3907 6.357367 CCAAACATCACTATATATAGGCCCC 58.643 44.000 21.20 0.00 34.69 5.80
3574 3908 6.158695 CCAAACATCACTATATATAGGCCCCT 59.841 42.308 21.20 0.07 34.69 4.79
3575 3909 6.814954 AACATCACTATATATAGGCCCCTG 57.185 41.667 21.20 11.46 34.69 4.45
3576 3910 5.219739 ACATCACTATATATAGGCCCCTGG 58.780 45.833 21.20 8.42 34.69 4.45
3596 3930 4.512484 TGGAAAAGAAAGCCCAGTTTTTG 58.488 39.130 0.00 0.00 0.00 2.44
3597 3931 4.223923 TGGAAAAGAAAGCCCAGTTTTTGA 59.776 37.500 0.00 0.00 0.00 2.69
3601 3935 5.357742 AAGAAAGCCCAGTTTTTGATGTT 57.642 34.783 0.00 0.00 0.00 2.71
3633 3967 7.858583 ACAAAAAGGCTTAAAACTAGTACTCG 58.141 34.615 0.00 0.00 0.00 4.18
3729 4063 6.875195 GGATCTGATGAAAAATGGCTTCAAAA 59.125 34.615 0.00 0.00 36.43 2.44
3730 4064 7.148523 GGATCTGATGAAAAATGGCTTCAAAAC 60.149 37.037 0.00 0.00 36.43 2.43
3731 4065 6.819284 TCTGATGAAAAATGGCTTCAAAACT 58.181 32.000 0.00 0.00 36.43 2.66
3732 4066 6.702723 TCTGATGAAAAATGGCTTCAAAACTG 59.297 34.615 0.00 0.00 36.43 3.16
3733 4067 6.347696 TGATGAAAAATGGCTTCAAAACTGT 58.652 32.000 0.00 0.00 36.43 3.55
3734 4068 7.495901 TGATGAAAAATGGCTTCAAAACTGTA 58.504 30.769 0.00 0.00 36.43 2.74
3735 4069 8.149647 TGATGAAAAATGGCTTCAAAACTGTAT 58.850 29.630 0.00 0.00 36.43 2.29
3736 4070 8.907222 ATGAAAAATGGCTTCAAAACTGTATT 57.093 26.923 0.00 0.00 36.43 1.89
3737 4071 8.729805 TGAAAAATGGCTTCAAAACTGTATTT 57.270 26.923 0.00 0.00 29.93 1.40
3738 4072 8.610896 TGAAAAATGGCTTCAAAACTGTATTTG 58.389 29.630 8.29 8.29 40.78 2.32
3739 4073 6.544038 AAATGGCTTCAAAACTGTATTTGC 57.456 33.333 9.23 0.00 39.57 3.68
3740 4074 4.662468 TGGCTTCAAAACTGTATTTGCA 57.338 36.364 9.23 0.00 39.57 4.08
3741 4075 5.016051 TGGCTTCAAAACTGTATTTGCAA 57.984 34.783 0.00 0.00 39.57 4.08
3742 4076 5.423015 TGGCTTCAAAACTGTATTTGCAAA 58.577 33.333 15.44 15.44 39.57 3.68
3743 4077 5.877012 TGGCTTCAAAACTGTATTTGCAAAA 59.123 32.000 17.19 2.96 39.57 2.44
3744 4078 6.372659 TGGCTTCAAAACTGTATTTGCAAAAA 59.627 30.769 17.19 4.23 39.57 1.94
3768 4102 9.674068 AAAAAGCACTTAAAATAGGGAAAACAA 57.326 25.926 0.00 0.00 0.00 2.83
3769 4103 9.674068 AAAAGCACTTAAAATAGGGAAAACAAA 57.326 25.926 0.00 0.00 0.00 2.83
3770 4104 9.674068 AAAGCACTTAAAATAGGGAAAACAAAA 57.326 25.926 0.00 0.00 0.00 2.44
3771 4105 9.845740 AAGCACTTAAAATAGGGAAAACAAAAT 57.154 25.926 0.00 0.00 0.00 1.82
3772 4106 9.489084 AGCACTTAAAATAGGGAAAACAAAATC 57.511 29.630 0.00 0.00 0.00 2.17
3773 4107 9.489084 GCACTTAAAATAGGGAAAACAAAATCT 57.511 29.630 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.012673 GTGGCTGAGCTAATTGACCAG 58.987 52.381 3.72 0.00 0.00 4.00
113 114 3.257393 CCGATCACTTCTCTTGTCCTTG 58.743 50.000 0.00 0.00 0.00 3.61
139 140 0.469144 ATTCCACGGGCAGGTTTGTT 60.469 50.000 0.00 0.00 0.00 2.83
140 141 0.893727 GATTCCACGGGCAGGTTTGT 60.894 55.000 0.00 0.00 0.00 2.83
150 151 2.484264 GAGTCAAAACTGGATTCCACGG 59.516 50.000 0.00 0.00 35.28 4.94
196 197 1.311859 GGCATCATCCGCAGAATTGA 58.688 50.000 0.00 0.00 0.00 2.57
213 214 2.752903 ACGGAACATAATGAAACTGGGC 59.247 45.455 0.00 0.00 0.00 5.36
276 277 2.832838 TCAATCCTGGAGGCAGAACTA 58.167 47.619 1.52 0.00 34.44 2.24
386 387 9.527157 TCAAAGACATGGAATTATTCAACCTTA 57.473 29.630 7.29 0.00 0.00 2.69
447 448 1.420514 TGTTGGGTTTCGTGGGATGTA 59.579 47.619 0.00 0.00 0.00 2.29
572 573 3.700970 TGGCACAAGCGATCCCGA 61.701 61.111 0.00 0.00 43.41 5.14
615 616 2.159517 GGAGTTGTTGCTATCCTTTGCG 60.160 50.000 0.00 0.00 0.00 4.85
618 619 3.826729 GGTTGGAGTTGTTGCTATCCTTT 59.173 43.478 0.00 0.00 32.79 3.11
619 620 3.181434 TGGTTGGAGTTGTTGCTATCCTT 60.181 43.478 0.00 0.00 32.79 3.36
627 628 1.402787 AAGGCTGGTTGGAGTTGTTG 58.597 50.000 0.00 0.00 0.00 3.33
684 686 0.033366 GCCAATCCAAAAACGGCACT 59.967 50.000 0.00 0.00 42.50 4.40
798 800 5.741011 TCGTCAATCTATTTTAGCAAGGGT 58.259 37.500 0.00 0.00 0.00 4.34
944 959 8.824756 TGAGTGTCTAGTCTTGGATAAATACT 57.175 34.615 0.00 0.00 0.00 2.12
1011 1033 2.404995 CGTCGGCTCTACTCCGGTT 61.405 63.158 0.00 0.00 46.43 4.44
1035 1057 2.404923 TGTCCACGAAAACCTTCACA 57.595 45.000 0.00 0.00 0.00 3.58
1059 1081 0.890996 CGAAGAGCACTTTGGCCCTT 60.891 55.000 0.00 0.00 34.28 3.95
1170 1192 2.606213 TCGTCCAGGCATCCCACA 60.606 61.111 0.00 0.00 0.00 4.17
1197 1219 2.516460 GAGAGCCCCTCGACGCTA 60.516 66.667 0.00 0.00 34.84 4.26
1222 1244 0.250295 CAAGGCTCGGTCCTGAACAA 60.250 55.000 0.00 0.00 36.38 2.83
1295 1317 1.158434 GTCGTCGACTCTGACCTTCT 58.842 55.000 18.09 0.00 35.40 2.85
1317 1339 0.247185 CGTAAACCTCCCGGTGCTTA 59.753 55.000 0.00 0.00 44.73 3.09
1472 1494 2.154462 CAAAAACGCCATCCTCTGAGT 58.846 47.619 3.66 0.00 0.00 3.41
1474 1496 2.151202 GACAAAAACGCCATCCTCTGA 58.849 47.619 0.00 0.00 0.00 3.27
1475 1497 1.879380 TGACAAAAACGCCATCCTCTG 59.121 47.619 0.00 0.00 0.00 3.35
1476 1498 2.270352 TGACAAAAACGCCATCCTCT 57.730 45.000 0.00 0.00 0.00 3.69
1513 1538 4.489810 ACTTTGAGATCATCAGTGACGAC 58.510 43.478 0.00 0.00 39.68 4.34
1563 1588 2.294074 TGAAACTCGTCCAAAAGGGTG 58.706 47.619 0.00 0.00 38.11 4.61
1596 1621 2.244486 TCCTCTGCTCAAGACTGGAT 57.756 50.000 0.00 0.00 26.99 3.41
1622 1647 4.983671 AAAACCTTGTCAGAACTGAACC 57.016 40.909 6.08 0.00 41.85 3.62
1673 1698 9.935682 CTGCAAAAACGTCTTATATTCATGTAT 57.064 29.630 0.00 0.00 0.00 2.29
1674 1699 8.941977 ACTGCAAAAACGTCTTATATTCATGTA 58.058 29.630 0.00 0.00 0.00 2.29
1675 1700 7.816640 ACTGCAAAAACGTCTTATATTCATGT 58.183 30.769 0.00 0.00 0.00 3.21
1676 1701 8.673626 AACTGCAAAAACGTCTTATATTCATG 57.326 30.769 0.00 0.00 0.00 3.07
1677 1702 8.511321 TGAACTGCAAAAACGTCTTATATTCAT 58.489 29.630 0.00 0.00 0.00 2.57
1678 1703 7.866729 TGAACTGCAAAAACGTCTTATATTCA 58.133 30.769 0.00 0.00 0.00 2.57
1679 1704 8.722342 TTGAACTGCAAAAACGTCTTATATTC 57.278 30.769 0.00 0.00 32.46 1.75
1680 1705 9.691362 AATTGAACTGCAAAAACGTCTTATATT 57.309 25.926 0.00 0.00 40.48 1.28
1681 1706 9.691362 AAATTGAACTGCAAAAACGTCTTATAT 57.309 25.926 0.00 0.00 40.48 0.86
1683 1708 9.691362 ATAAATTGAACTGCAAAAACGTCTTAT 57.309 25.926 0.00 0.00 40.48 1.73
1685 1710 9.180678 CTATAAATTGAACTGCAAAAACGTCTT 57.819 29.630 0.00 0.00 40.48 3.01
1686 1711 8.564574 TCTATAAATTGAACTGCAAAAACGTCT 58.435 29.630 0.00 0.00 40.48 4.18
1687 1712 8.722342 TCTATAAATTGAACTGCAAAAACGTC 57.278 30.769 0.00 0.00 40.48 4.34
1688 1713 7.807907 CCTCTATAAATTGAACTGCAAAAACGT 59.192 33.333 0.00 0.00 40.48 3.99
1689 1714 7.273381 CCCTCTATAAATTGAACTGCAAAAACG 59.727 37.037 0.00 0.00 40.48 3.60
1690 1715 8.303876 TCCCTCTATAAATTGAACTGCAAAAAC 58.696 33.333 0.00 0.00 40.48 2.43
1691 1716 8.415950 TCCCTCTATAAATTGAACTGCAAAAA 57.584 30.769 0.00 0.00 40.48 1.94
1692 1717 7.669722 ACTCCCTCTATAAATTGAACTGCAAAA 59.330 33.333 0.00 0.00 40.48 2.44
1693 1718 7.175104 ACTCCCTCTATAAATTGAACTGCAAA 58.825 34.615 0.00 0.00 40.48 3.68
1694 1719 6.721318 ACTCCCTCTATAAATTGAACTGCAA 58.279 36.000 0.00 0.00 41.53 4.08
1695 1720 6.313519 ACTCCCTCTATAAATTGAACTGCA 57.686 37.500 0.00 0.00 0.00 4.41
1696 1721 7.988028 AGTTACTCCCTCTATAAATTGAACTGC 59.012 37.037 0.00 0.00 0.00 4.40
1697 1722 9.892130 AAGTTACTCCCTCTATAAATTGAACTG 57.108 33.333 0.00 0.00 0.00 3.16
1708 1733 9.945904 CTCAAACTAAAAAGTTACTCCCTCTAT 57.054 33.333 0.00 0.00 0.00 1.98
1709 1734 7.876582 GCTCAAACTAAAAAGTTACTCCCTCTA 59.123 37.037 0.00 0.00 0.00 2.43
1710 1735 6.711194 GCTCAAACTAAAAAGTTACTCCCTCT 59.289 38.462 0.00 0.00 0.00 3.69
1711 1736 6.485648 TGCTCAAACTAAAAAGTTACTCCCTC 59.514 38.462 0.00 0.00 0.00 4.30
1712 1737 6.362248 TGCTCAAACTAAAAAGTTACTCCCT 58.638 36.000 0.00 0.00 0.00 4.20
1713 1738 6.628919 TGCTCAAACTAAAAAGTTACTCCC 57.371 37.500 0.00 0.00 0.00 4.30
1716 1741 9.626045 GCATAATGCTCAAACTAAAAAGTTACT 57.374 29.630 0.00 0.00 40.96 2.24
1717 1742 8.860128 GGCATAATGCTCAAACTAAAAAGTTAC 58.140 33.333 0.00 0.00 44.28 2.50
1718 1743 7.753132 CGGCATAATGCTCAAACTAAAAAGTTA 59.247 33.333 0.00 0.00 44.28 2.24
1719 1744 6.586082 CGGCATAATGCTCAAACTAAAAAGTT 59.414 34.615 0.00 0.00 44.28 2.66
1720 1745 6.072175 TCGGCATAATGCTCAAACTAAAAAGT 60.072 34.615 0.00 0.00 44.28 2.66
1721 1746 6.321717 TCGGCATAATGCTCAAACTAAAAAG 58.678 36.000 0.00 0.00 44.28 2.27
1727 1752 3.002656 CGATTCGGCATAATGCTCAAACT 59.997 43.478 0.00 0.00 44.28 2.66
1821 1855 1.504359 CAGTTAACGGGTTCTGCGAA 58.496 50.000 0.00 0.00 0.00 4.70
1860 1900 1.228094 TGAACCATCAGGCGCAACA 60.228 52.632 10.83 0.00 39.06 3.33
1906 1946 7.071698 AGCCTCATTATCTTGTTCTTCAGGATA 59.928 37.037 0.00 0.00 41.84 2.59
1947 1987 4.018415 TGAAGAACCCTTAGGCTAGCATTT 60.018 41.667 18.24 0.00 36.11 2.32
2182 2222 0.310854 CCAAAGAAGGGCGTCAACAC 59.689 55.000 0.00 0.00 0.00 3.32
2228 2268 2.593346 ATCTGGAGCTAGTTCTTGCG 57.407 50.000 6.54 0.00 0.00 4.85
2306 2346 4.653341 ACCAAAATTTCCCATGACAAGTGA 59.347 37.500 0.00 0.00 0.00 3.41
2345 2394 8.716619 TTTTACACTTACGTTGCAATATTGAC 57.283 30.769 19.73 10.72 0.00 3.18
2445 2503 4.002982 TCACAATGAATTTCTGAGGTCCG 58.997 43.478 0.00 0.00 0.00 4.79
2521 2579 6.039382 TCCTTTCTCTAAAGTTTGGCTTCAAC 59.961 38.462 0.00 0.00 40.51 3.18
2536 2594 7.239438 TCTTTCTCTACAAGGTCCTTTCTCTA 58.761 38.462 0.00 0.00 0.00 2.43
2600 2658 8.978874 ATCTGTGAGGCAAAATGTGTATATTA 57.021 30.769 0.00 0.00 0.00 0.98
2672 2738 7.444183 TGAGTAGTTCCATAACCTGTTCAAAAG 59.556 37.037 0.00 0.00 36.15 2.27
2691 2757 0.326264 CCAGGGCAGCTTTGAGTAGT 59.674 55.000 0.00 0.00 0.00 2.73
2707 2773 1.153862 GAGCTCTGCGAGTCACCAG 60.154 63.158 6.43 2.20 31.39 4.00
2821 2893 9.706691 TTAAGAGTAATACTGCATATTAGTGCC 57.293 33.333 15.23 7.21 44.43 5.01
2893 2965 3.755378 AGCAACAGTTTGGCTATTCTGAG 59.245 43.478 8.51 3.35 32.81 3.35
2934 3009 6.097839 TGAACTATGAATACAGACCACCCTAC 59.902 42.308 0.00 0.00 0.00 3.18
2953 3028 4.985538 AGCAAGGAAATCCAAGTGAACTA 58.014 39.130 1.67 0.00 38.89 2.24
2978 3056 3.699038 TCAAAAGCCACAAGTTGCTTAGT 59.301 39.130 11.30 1.66 46.58 2.24
2983 3061 2.869233 TCTCAAAAGCCACAAGTTGC 57.131 45.000 1.81 0.00 0.00 4.17
3100 3434 8.409358 AGCTGACCAAGAAATACAATAAACTT 57.591 30.769 0.00 0.00 0.00 2.66
3155 3489 2.237143 AGCTCCCAAGATCAATCGTCAA 59.763 45.455 0.00 0.00 0.00 3.18
3194 3528 0.618981 AAGATCGGTCCCCAAGGAAC 59.381 55.000 0.00 0.00 46.38 3.62
3195 3529 1.280998 GAAAGATCGGTCCCCAAGGAA 59.719 52.381 0.00 0.00 46.38 3.36
3211 3545 9.463443 AAGGAAACAATTTCATTTACTCGAAAG 57.537 29.630 3.87 0.00 40.35 2.62
3247 3581 8.927675 TTGTAATTGAAGGTGTTATAGGTGTT 57.072 30.769 0.00 0.00 0.00 3.32
3397 3731 4.003648 CCTCTTTGCCGAAGTCTTTGTAT 58.996 43.478 0.00 0.00 36.70 2.29
3414 3748 1.542492 CAGTCCAATTGCTGCCTCTT 58.458 50.000 0.00 0.00 0.00 2.85
3421 3755 1.251251 GTTGCTCCAGTCCAATTGCT 58.749 50.000 0.00 0.00 0.00 3.91
3451 3785 4.584029 AATGTTCGTGCGTATGAAAGAG 57.416 40.909 9.85 0.00 33.82 2.85
3459 3793 5.811100 TCATTATTGGTAATGTTCGTGCGTA 59.189 36.000 7.74 0.00 44.82 4.42
3460 3794 4.632251 TCATTATTGGTAATGTTCGTGCGT 59.368 37.500 7.74 0.00 44.82 5.24
3473 3807 7.452562 AGGTGCTTTCAAAAATCATTATTGGT 58.547 30.769 0.00 0.00 0.00 3.67
3539 3873 3.912745 GATGTTTGGGGGTCGCGGT 62.913 63.158 6.13 0.00 0.00 5.68
3540 3874 3.131478 GATGTTTGGGGGTCGCGG 61.131 66.667 6.13 0.00 0.00 6.46
3543 3877 2.710096 ATAGTGATGTTTGGGGGTCG 57.290 50.000 0.00 0.00 0.00 4.79
3544 3878 7.565680 CCTATATATAGTGATGTTTGGGGGTC 58.434 42.308 16.78 0.00 0.00 4.46
3545 3879 6.069615 GCCTATATATAGTGATGTTTGGGGGT 60.070 42.308 16.78 0.00 0.00 4.95
3546 3880 6.357367 GCCTATATATAGTGATGTTTGGGGG 58.643 44.000 16.78 1.29 0.00 5.40
3547 3881 6.357367 GGCCTATATATAGTGATGTTTGGGG 58.643 44.000 16.78 1.47 0.00 4.96
3548 3882 6.357367 GGGCCTATATATAGTGATGTTTGGG 58.643 44.000 16.78 1.91 0.00 4.12
3550 3884 7.050377 CAGGGGCCTATATATAGTGATGTTTG 58.950 42.308 16.78 2.45 0.00 2.93
3551 3885 6.158695 CCAGGGGCCTATATATAGTGATGTTT 59.841 42.308 16.78 0.00 0.00 2.83
3552 3886 5.667626 CCAGGGGCCTATATATAGTGATGTT 59.332 44.000 16.78 0.00 0.00 2.71
3553 3887 5.042600 TCCAGGGGCCTATATATAGTGATGT 60.043 44.000 16.78 0.00 0.00 3.06
3554 3888 5.467738 TCCAGGGGCCTATATATAGTGATG 58.532 45.833 16.78 8.93 0.00 3.07
3555 3889 5.768454 TCCAGGGGCCTATATATAGTGAT 57.232 43.478 16.78 0.00 0.00 3.06
3556 3890 5.562080 TTCCAGGGGCCTATATATAGTGA 57.438 43.478 16.78 1.83 0.00 3.41
3557 3891 6.443849 TCTTTTCCAGGGGCCTATATATAGTG 59.556 42.308 16.78 9.00 0.00 2.74
3558 3892 6.581122 TCTTTTCCAGGGGCCTATATATAGT 58.419 40.000 16.78 0.00 0.00 2.12
3559 3893 7.510675 TTCTTTTCCAGGGGCCTATATATAG 57.489 40.000 12.18 12.18 0.00 1.31
3560 3894 7.530584 GCTTTCTTTTCCAGGGGCCTATATATA 60.531 40.741 0.84 0.00 0.00 0.86
3561 3895 6.751220 GCTTTCTTTTCCAGGGGCCTATATAT 60.751 42.308 0.84 0.00 0.00 0.86
3562 3896 5.457633 GCTTTCTTTTCCAGGGGCCTATATA 60.458 44.000 0.84 0.00 0.00 0.86
3563 3897 4.692777 GCTTTCTTTTCCAGGGGCCTATAT 60.693 45.833 0.84 0.00 0.00 0.86
3564 3898 3.372675 GCTTTCTTTTCCAGGGGCCTATA 60.373 47.826 0.84 0.00 0.00 1.31
3565 3899 2.624293 GCTTTCTTTTCCAGGGGCCTAT 60.624 50.000 0.84 0.00 0.00 2.57
3566 3900 1.272480 GCTTTCTTTTCCAGGGGCCTA 60.272 52.381 0.84 0.00 0.00 3.93
3567 3901 0.542938 GCTTTCTTTTCCAGGGGCCT 60.543 55.000 0.84 0.00 0.00 5.19
3568 3902 1.544825 GGCTTTCTTTTCCAGGGGCC 61.545 60.000 0.00 0.00 0.00 5.80
3569 3903 1.544825 GGGCTTTCTTTTCCAGGGGC 61.545 60.000 0.00 0.00 0.00 5.80
3570 3904 0.178935 TGGGCTTTCTTTTCCAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
3571 3905 1.260544 CTGGGCTTTCTTTTCCAGGG 58.739 55.000 0.00 0.00 42.12 4.45
3574 3908 4.223923 TCAAAAACTGGGCTTTCTTTTCCA 59.776 37.500 0.00 0.00 0.00 3.53
3575 3909 4.765273 TCAAAAACTGGGCTTTCTTTTCC 58.235 39.130 0.00 0.00 0.00 3.13
3576 3910 5.817296 ACATCAAAAACTGGGCTTTCTTTTC 59.183 36.000 0.00 0.00 0.00 2.29
3616 3950 6.253083 GTCATGTCCGAGTACTAGTTTTAAGC 59.747 42.308 0.00 0.00 0.00 3.09
3683 4017 5.271598 TCCATGCTTAATTTGATGGGAGTT 58.728 37.500 0.00 0.00 36.72 3.01
3698 4032 5.684030 GCCATTTTTCATCAGATCCATGCTT 60.684 40.000 0.00 0.00 0.00 3.91
3742 4076 9.674068 TTGTTTTCCCTATTTTAAGTGCTTTTT 57.326 25.926 0.00 0.00 0.00 1.94
3743 4077 9.674068 TTTGTTTTCCCTATTTTAAGTGCTTTT 57.326 25.926 0.00 0.00 0.00 2.27
3744 4078 9.674068 TTTTGTTTTCCCTATTTTAAGTGCTTT 57.326 25.926 0.00 0.00 0.00 3.51
3745 4079 9.845740 ATTTTGTTTTCCCTATTTTAAGTGCTT 57.154 25.926 0.00 0.00 0.00 3.91
3746 4080 9.489084 GATTTTGTTTTCCCTATTTTAAGTGCT 57.511 29.630 0.00 0.00 0.00 4.40
3747 4081 9.489084 AGATTTTGTTTTCCCTATTTTAAGTGC 57.511 29.630 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.