Multiple sequence alignment - TraesCS1A01G405600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G405600 chr1A 100.000 5921 0 0 1 5921 568412215 568418135 0.000000e+00 10935.0
1 TraesCS1A01G405600 chr1A 79.919 493 58 30 1007 1479 568543722 568544193 2.060000e-84 324.0
2 TraesCS1A01G405600 chr1A 82.228 377 38 13 4661 5024 568527333 568527693 1.250000e-76 298.0
3 TraesCS1A01G405600 chr1A 88.235 51 4 2 473 522 2355963 2356012 6.410000e-05 60.2
4 TraesCS1A01G405600 chr1D 90.027 2918 168 54 536 3387 474009883 474012743 0.000000e+00 3663.0
5 TraesCS1A01G405600 chr1D 93.323 1917 81 22 3381 5288 474012772 474014650 0.000000e+00 2787.0
6 TraesCS1A01G405600 chr1D 86.446 664 68 9 2543 3204 474026660 474027303 0.000000e+00 708.0
7 TraesCS1A01G405600 chr1D 87.991 458 46 4 5302 5755 474014635 474015087 3.140000e-147 532.0
8 TraesCS1A01G405600 chr1D 82.077 597 65 25 4412 5004 474027840 474028398 6.950000e-129 472.0
9 TraesCS1A01G405600 chr1D 85.752 379 41 5 2324 2700 474019462 474019829 7.200000e-104 388.0
10 TraesCS1A01G405600 chr1D 78.695 521 66 29 1007 1506 474052890 474053386 7.450000e-79 305.0
11 TraesCS1A01G405600 chr1D 90.043 231 22 1 231 461 401204835 401204606 1.250000e-76 298.0
12 TraesCS1A01G405600 chr1D 82.059 340 33 10 4357 4693 474027511 474027825 1.270000e-66 265.0
13 TraesCS1A01G405600 chr1D 90.000 50 5 0 473 522 445932880 445932831 1.380000e-06 65.8
14 TraesCS1A01G405600 chr1D 89.130 46 4 1 2177 2222 474024835 474024879 8.290000e-04 56.5
15 TraesCS1A01G405600 chr1B 89.606 2617 164 56 2424 4962 659529696 659532282 0.000000e+00 3227.0
16 TraesCS1A01G405600 chr1B 91.617 1861 96 19 597 2414 659377456 659379299 0.000000e+00 2518.0
17 TraesCS1A01G405600 chr1B 87.357 1487 114 45 2423 3883 659379465 659380903 0.000000e+00 1637.0
18 TraesCS1A01G405600 chr1B 86.859 1423 108 33 3899 5289 659380995 659382370 0.000000e+00 1519.0
19 TraesCS1A01G405600 chr1B 81.863 1213 130 37 2186 3387 659389175 659390308 0.000000e+00 939.0
20 TraesCS1A01G405600 chr1B 85.181 938 108 15 2424 3354 659520658 659521571 0.000000e+00 933.0
21 TraesCS1A01G405600 chr1B 86.560 878 56 29 4420 5288 659390429 659391253 0.000000e+00 911.0
22 TraesCS1A01G405600 chr1B 86.916 535 50 7 2349 2873 659386254 659386778 3.080000e-162 582.0
23 TraesCS1A01G405600 chr1B 85.409 562 59 15 2323 2873 659537207 659537756 4.010000e-156 562.0
24 TraesCS1A01G405600 chr1B 89.485 447 40 2 5309 5755 659532544 659532983 5.180000e-155 558.0
25 TraesCS1A01G405600 chr1B 88.816 456 44 4 5302 5755 659391238 659391688 2.410000e-153 553.0
26 TraesCS1A01G405600 chr1B 84.657 554 55 10 2261 2807 659542209 659542739 5.260000e-145 525.0
27 TraesCS1A01G405600 chr1B 90.390 333 31 1 5302 5633 659382354 659382686 2.530000e-118 436.0
28 TraesCS1A01G405600 chr1B 89.688 320 33 0 5315 5634 659536437 659536756 5.520000e-110 409.0
29 TraesCS1A01G405600 chr1B 88.720 328 36 1 5308 5634 659528916 659529243 3.320000e-107 399.0
30 TraesCS1A01G405600 chr1B 88.750 320 36 0 5315 5634 659394280 659394599 5.560000e-105 392.0
31 TraesCS1A01G405600 chr1B 87.500 328 40 1 5307 5634 659535778 659536104 1.560000e-100 377.0
32 TraesCS1A01G405600 chr1B 87.387 333 35 5 2547 2873 659396440 659396771 5.600000e-100 375.0
33 TraesCS1A01G405600 chr1B 86.890 328 42 1 5307 5634 659385315 659385641 3.370000e-97 366.0
34 TraesCS1A01G405600 chr1B 84.815 270 19 6 5006 5267 659532286 659532541 9.850000e-63 252.0
35 TraesCS1A01G405600 chr1B 82.192 292 30 14 1006 1289 659554966 659555243 1.280000e-56 231.0
36 TraesCS1A01G405600 chr1B 88.649 185 19 2 231 415 673787175 673787357 2.150000e-54 224.0
37 TraesCS1A01G405600 chr1B 92.063 126 8 2 2261 2385 659519548 659519672 6.100000e-40 176.0
38 TraesCS1A01G405600 chr1B 94.444 108 6 0 1372 1479 659555320 659555427 3.670000e-37 167.0
39 TraesCS1A01G405600 chr1B 91.667 84 3 2 5836 5915 659383412 659383495 4.850000e-21 113.0
40 TraesCS1A01G405600 chr1B 94.521 73 4 0 2154 2226 659519408 659519480 4.850000e-21 113.0
41 TraesCS1A01G405600 chr1B 87.912 91 9 1 4512 4600 659395783 659395873 8.120000e-19 106.0
42 TraesCS1A01G405600 chr1B 82.353 119 15 4 4488 4600 659518424 659518542 1.360000e-16 99.0
43 TraesCS1A01G405600 chr1B 90.000 60 6 0 2814 2873 659518254 659518313 1.770000e-10 78.7
44 TraesCS1A01G405600 chr1B 93.478 46 2 1 2177 2222 659519519 659519563 3.830000e-07 67.6
45 TraesCS1A01G405600 chr1B 91.304 46 3 1 2177 2222 659389223 659389267 1.780000e-05 62.1
46 TraesCS1A01G405600 chr1B 90.909 44 4 0 2937 2980 659537160 659537203 6.410000e-05 60.2
47 TraesCS1A01G405600 chr6D 90.948 232 18 3 231 461 94757181 94757410 5.760000e-80 309.0
48 TraesCS1A01G405600 chr5B 89.873 237 20 4 227 461 621635233 621634999 9.640000e-78 302.0
49 TraesCS1A01G405600 chr5B 89.167 240 26 0 221 460 146336346 146336585 3.470000e-77 300.0
50 TraesCS1A01G405600 chr6B 90.086 232 22 1 230 461 309685670 309685900 3.470000e-77 300.0
51 TraesCS1A01G405600 chr6B 90.129 233 20 3 230 461 714079011 714079241 3.470000e-77 300.0
52 TraesCS1A01G405600 chr6B 88.000 50 6 0 473 522 688594798 688594847 6.410000e-05 60.2
53 TraesCS1A01G405600 chr4A 90.043 231 22 1 231 461 659211013 659211242 1.250000e-76 298.0
54 TraesCS1A01G405600 chr4A 89.362 235 24 1 227 461 121496007 121496240 1.610000e-75 294.0
55 TraesCS1A01G405600 chr3B 89.700 233 23 1 227 459 565959521 565959752 4.490000e-76 296.0
56 TraesCS1A01G405600 chr3B 85.603 257 36 1 1036 1292 418473562 418473817 9.780000e-68 268.0
57 TraesCS1A01G405600 chr5A 79.784 371 54 19 1126 1479 673553402 673553768 3.540000e-62 250.0
58 TraesCS1A01G405600 chr4D 77.753 445 62 28 1051 1479 494065902 494066325 7.670000e-59 239.0
59 TraesCS1A01G405600 chr4B 81.507 292 37 10 998 1288 633142519 633142794 2.150000e-54 224.0
60 TraesCS1A01G405600 chr4B 88.235 51 4 2 473 522 534404906 534404955 6.410000e-05 60.2
61 TraesCS1A01G405600 chr6A 86.559 186 22 2 230 415 605397292 605397474 1.010000e-47 202.0
62 TraesCS1A01G405600 chr7B 84.694 196 19 6 1295 1489 22541015 22541200 1.010000e-42 185.0
63 TraesCS1A01G405600 chr7B 90.909 44 4 0 479 522 207908347 207908304 6.410000e-05 60.2
64 TraesCS1A01G405600 chr7A 85.484 186 17 4 1295 1480 80346114 80346289 1.010000e-42 185.0
65 TraesCS1A01G405600 chr3A 84.946 186 18 5 1295 1480 525197942 525198117 4.710000e-41 180.0
66 TraesCS1A01G405600 chr2D 90.000 50 5 0 473 522 585675522 585675473 1.380000e-06 65.8
67 TraesCS1A01G405600 chrUn 88.235 51 1 4 473 523 160333192 160333237 8.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G405600 chr1A 568412215 568418135 5920 False 10935.000000 10935 100.000000 1 5921 1 chr1A.!!$F2 5920
1 TraesCS1A01G405600 chr1D 474009883 474015087 5204 False 2327.333333 3663 90.447000 536 5755 3 chr1D.!!$F3 5219
2 TraesCS1A01G405600 chr1D 474024835 474028398 3563 False 375.375000 708 84.928000 2177 5004 4 chr1D.!!$F4 2827
3 TraesCS1A01G405600 chr1B 659377456 659396771 19315 False 750.650000 2518 88.163429 597 5915 14 chr1B.!!$F3 5318
4 TraesCS1A01G405600 chr1B 659528916 659537756 8840 False 730.525000 3227 88.266500 2323 5755 8 chr1B.!!$F5 3432
5 TraesCS1A01G405600 chr1B 659542209 659542739 530 False 525.000000 525 84.657000 2261 2807 1 chr1B.!!$F1 546
6 TraesCS1A01G405600 chr1B 659518254 659521571 3317 False 244.550000 933 89.599333 2154 4600 6 chr1B.!!$F4 2446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.102300 TCGCCGGTGTCATGATGTAG 59.898 55.0 16.01 0.0 0.00 2.74 F
533 534 0.105593 AGGGAGTAGACGACGCGATA 59.894 55.0 15.93 0.0 0.00 2.92 F
2228 2309 0.108233 CTCAGAGCACAAGAGGAGCC 60.108 60.0 0.00 0.0 0.00 4.70 F
2772 5610 0.819582 GGGGTTTCGAGACCGACATA 59.180 55.0 18.10 0.0 45.50 2.29 F
4435 7439 0.690411 AGCTGCTGGCCTCTCATAGT 60.690 55.0 3.32 0.0 43.05 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1853 0.681175 AGCTTGGAAAACATGTGGGC 59.319 50.000 0.00 0.00 0.00 5.36 R
2503 5323 1.073923 AGAAGCCGGGTGTCAGAAATT 59.926 47.619 7.07 0.00 0.00 1.82 R
4215 7215 2.581216 AGGTGTAGTCCGAGTGAGAA 57.419 50.000 0.00 0.00 0.00 2.87 R
4581 7588 0.392193 CGAAGCTCTTGATGCCCACT 60.392 55.000 0.00 0.00 0.00 4.00 R
5693 17866 0.107508 TGACTGAGCTAGGCCATTGC 60.108 55.000 5.01 5.96 31.29 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.508632 GTTGCCACGACTTAGCTTGA 58.491 50.000 0.00 0.00 0.00 3.02
21 22 0.391228 TGCCACGACTTAGCTTGACA 59.609 50.000 0.00 0.00 0.00 3.58
22 23 1.202592 TGCCACGACTTAGCTTGACAA 60.203 47.619 0.00 0.00 0.00 3.18
23 24 2.076863 GCCACGACTTAGCTTGACAAT 58.923 47.619 0.00 0.00 0.00 2.71
26 27 3.123621 CCACGACTTAGCTTGACAATGAC 59.876 47.826 0.00 0.00 0.00 3.06
27 28 3.123621 CACGACTTAGCTTGACAATGACC 59.876 47.826 0.00 0.00 0.00 4.02
29 30 3.935203 CGACTTAGCTTGACAATGACCAT 59.065 43.478 0.00 0.00 0.00 3.55
30 31 4.033358 CGACTTAGCTTGACAATGACCATC 59.967 45.833 0.00 0.00 0.00 3.51
32 33 2.885135 AGCTTGACAATGACCATCCA 57.115 45.000 0.00 0.00 0.00 3.41
36 37 2.198827 TGACAATGACCATCCACACC 57.801 50.000 0.00 0.00 0.00 4.16
37 38 1.423161 TGACAATGACCATCCACACCA 59.577 47.619 0.00 0.00 0.00 4.17
39 40 2.684881 GACAATGACCATCCACACCATC 59.315 50.000 0.00 0.00 0.00 3.51
40 41 1.672363 CAATGACCATCCACACCATCG 59.328 52.381 0.00 0.00 0.00 3.84
41 42 0.464373 ATGACCATCCACACCATCGC 60.464 55.000 0.00 0.00 0.00 4.58
42 43 1.819632 GACCATCCACACCATCGCC 60.820 63.158 0.00 0.00 0.00 5.54
44 45 2.896854 CATCCACACCATCGCCGG 60.897 66.667 0.00 0.00 0.00 6.13
45 46 3.399181 ATCCACACCATCGCCGGT 61.399 61.111 1.90 0.00 41.07 5.28
53 54 1.227645 CCATCGCCGGTGTCATGAT 60.228 57.895 16.01 0.00 0.00 2.45
54 55 1.501337 CCATCGCCGGTGTCATGATG 61.501 60.000 16.01 10.61 36.93 3.07
55 56 0.811219 CATCGCCGGTGTCATGATGT 60.811 55.000 16.01 0.00 33.48 3.06
57 58 0.102300 TCGCCGGTGTCATGATGTAG 59.898 55.000 16.01 0.00 0.00 2.74
58 59 1.490693 CGCCGGTGTCATGATGTAGC 61.491 60.000 6.91 0.00 0.00 3.58
60 61 0.177836 CCGGTGTCATGATGTAGCCA 59.822 55.000 0.00 0.00 0.00 4.75
61 62 1.575244 CGGTGTCATGATGTAGCCAG 58.425 55.000 0.00 0.00 0.00 4.85
62 63 1.136891 CGGTGTCATGATGTAGCCAGA 59.863 52.381 0.00 0.00 0.00 3.86
64 65 3.136763 GGTGTCATGATGTAGCCAGATG 58.863 50.000 0.00 0.00 0.00 2.90
65 66 2.547211 GTGTCATGATGTAGCCAGATGC 59.453 50.000 0.00 0.00 41.71 3.91
68 69 2.701951 TCATGATGTAGCCAGATGCAGA 59.298 45.455 0.00 0.00 44.83 4.26
71 72 1.690893 GATGTAGCCAGATGCAGAGGA 59.309 52.381 6.08 0.00 44.83 3.71
72 73 1.117994 TGTAGCCAGATGCAGAGGAG 58.882 55.000 6.08 0.00 44.83 3.69
73 74 0.249826 GTAGCCAGATGCAGAGGAGC 60.250 60.000 6.08 0.00 44.83 4.70
74 75 1.406065 TAGCCAGATGCAGAGGAGCC 61.406 60.000 6.08 0.00 44.83 4.70
75 76 2.108566 CCAGATGCAGAGGAGCCG 59.891 66.667 0.00 0.00 0.00 5.52
78 79 2.894387 GATGCAGAGGAGCCGTGC 60.894 66.667 9.23 9.23 37.73 5.34
80 81 3.939939 TGCAGAGGAGCCGTGCAA 61.940 61.111 14.66 2.50 44.05 4.08
82 83 2.970974 GCAGAGGAGCCGTGCAAAC 61.971 63.158 10.79 0.00 37.16 2.93
83 84 1.597854 CAGAGGAGCCGTGCAAACA 60.598 57.895 0.00 0.00 0.00 2.83
84 85 1.598130 AGAGGAGCCGTGCAAACAC 60.598 57.895 0.00 0.00 43.76 3.32
85 86 1.598130 GAGGAGCCGTGCAAACACT 60.598 57.895 0.00 0.00 45.10 3.55
86 87 1.845809 GAGGAGCCGTGCAAACACTG 61.846 60.000 0.00 0.00 45.10 3.66
88 89 1.571460 GAGCCGTGCAAACACTGAG 59.429 57.895 0.00 0.00 45.10 3.35
90 91 0.250467 AGCCGTGCAAACACTGAGAT 60.250 50.000 0.00 0.00 45.10 2.75
91 92 0.110056 GCCGTGCAAACACTGAGATG 60.110 55.000 0.00 0.00 45.10 2.90
92 93 0.518636 CCGTGCAAACACTGAGATGG 59.481 55.000 0.00 0.00 45.10 3.51
94 95 0.953727 GTGCAAACACTGAGATGGCA 59.046 50.000 0.00 0.00 43.85 4.92
95 96 1.068748 GTGCAAACACTGAGATGGCAG 60.069 52.381 0.00 0.00 43.85 4.85
105 106 1.134128 TGAGATGGCAGTGTTGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
106 107 1.532868 GAGATGGCAGTGTTGTGTGTC 59.467 52.381 0.00 0.00 0.00 3.67
107 108 0.235665 GATGGCAGTGTTGTGTGTCG 59.764 55.000 0.00 0.00 0.00 4.35
108 109 0.463654 ATGGCAGTGTTGTGTGTCGT 60.464 50.000 0.00 0.00 0.00 4.34
109 110 1.351707 GGCAGTGTTGTGTGTCGTG 59.648 57.895 0.00 0.00 0.00 4.35
112 113 2.171079 AGTGTTGTGTGTCGTGCCG 61.171 57.895 0.00 0.00 0.00 5.69
113 114 2.892914 TGTTGTGTGTCGTGCCGG 60.893 61.111 0.00 0.00 0.00 6.13
115 116 2.279851 TTGTGTGTCGTGCCGGAG 60.280 61.111 5.05 0.00 0.00 4.63
119 120 1.153329 TGTGTCGTGCCGGAGTTTT 60.153 52.632 5.05 0.00 0.00 2.43
121 122 2.251371 GTCGTGCCGGAGTTTTGC 59.749 61.111 5.05 0.00 0.00 3.68
124 125 1.082104 CGTGCCGGAGTTTTGCTTC 60.082 57.895 5.05 0.00 0.00 3.86
125 126 1.285950 GTGCCGGAGTTTTGCTTCC 59.714 57.895 5.05 0.00 0.00 3.46
127 128 2.978018 GCCGGAGTTTTGCTTCCCG 61.978 63.158 5.05 0.00 39.85 5.14
129 130 1.298859 CCGGAGTTTTGCTTCCCGAG 61.299 60.000 0.00 0.00 42.49 4.63
131 132 0.960861 GGAGTTTTGCTTCCCGAGGG 60.961 60.000 0.65 0.65 0.00 4.30
132 133 1.587043 GAGTTTTGCTTCCCGAGGGC 61.587 60.000 2.58 0.00 34.68 5.19
135 136 3.605749 TTTGCTTCCCGAGGGCGAG 62.606 63.158 2.58 5.25 40.82 5.03
139 140 4.161295 TTCCCGAGGGCGAGCATG 62.161 66.667 2.58 0.00 40.82 4.06
148 149 3.869272 GCGAGCATGGCGTTGGAG 61.869 66.667 0.00 0.00 0.00 3.86
149 150 3.197790 CGAGCATGGCGTTGGAGG 61.198 66.667 0.00 0.00 0.00 4.30
157 158 4.162690 GCGTTGGAGGCGGGAGAT 62.163 66.667 0.00 0.00 0.00 2.75
158 159 2.202932 CGTTGGAGGCGGGAGATG 60.203 66.667 0.00 0.00 0.00 2.90
159 160 2.190578 GTTGGAGGCGGGAGATGG 59.809 66.667 0.00 0.00 0.00 3.51
161 162 2.669133 TTGGAGGCGGGAGATGGTG 61.669 63.158 0.00 0.00 0.00 4.17
163 164 2.801631 GGAGGCGGGAGATGGTGAG 61.802 68.421 0.00 0.00 0.00 3.51
167 168 1.369321 GCGGGAGATGGTGAGATCC 59.631 63.158 0.00 0.00 0.00 3.36
168 169 1.118356 GCGGGAGATGGTGAGATCCT 61.118 60.000 0.00 0.00 32.18 3.24
170 171 1.889829 CGGGAGATGGTGAGATCCTAC 59.110 57.143 0.00 0.00 32.18 3.18
172 173 2.896685 GGGAGATGGTGAGATCCTACTG 59.103 54.545 0.00 0.00 32.18 2.74
174 175 4.219115 GGAGATGGTGAGATCCTACTGAA 58.781 47.826 0.00 0.00 0.00 3.02
177 178 3.474798 TGGTGAGATCCTACTGAAGGT 57.525 47.619 0.00 0.00 46.62 3.50
178 179 3.099905 TGGTGAGATCCTACTGAAGGTG 58.900 50.000 0.00 0.00 46.62 4.00
179 180 2.432510 GGTGAGATCCTACTGAAGGTGG 59.567 54.545 0.00 0.00 46.62 4.61
180 181 2.111384 TGAGATCCTACTGAAGGTGGC 58.889 52.381 0.00 0.00 46.62 5.01
181 182 2.111384 GAGATCCTACTGAAGGTGGCA 58.889 52.381 0.00 0.00 46.62 4.92
182 183 2.703007 GAGATCCTACTGAAGGTGGCAT 59.297 50.000 0.00 0.00 46.62 4.40
183 184 2.703007 AGATCCTACTGAAGGTGGCATC 59.297 50.000 0.00 0.00 46.62 3.91
184 185 0.824109 TCCTACTGAAGGTGGCATCG 59.176 55.000 0.00 0.00 46.62 3.84
186 187 1.754803 CCTACTGAAGGTGGCATCGTA 59.245 52.381 0.00 0.00 40.94 3.43
188 189 2.386661 ACTGAAGGTGGCATCGTAAG 57.613 50.000 0.00 0.00 0.00 2.34
190 191 2.271800 CTGAAGGTGGCATCGTAAGTC 58.728 52.381 0.00 0.00 39.48 3.01
191 192 1.278238 GAAGGTGGCATCGTAAGTCG 58.722 55.000 0.00 0.00 41.41 4.18
192 193 0.606604 AAGGTGGCATCGTAAGTCGT 59.393 50.000 0.00 0.00 40.80 4.34
193 194 0.606604 AGGTGGCATCGTAAGTCGTT 59.393 50.000 0.00 0.00 40.80 3.85
195 196 1.425412 GTGGCATCGTAAGTCGTTGT 58.575 50.000 0.00 0.00 40.20 3.32
196 197 1.389106 GTGGCATCGTAAGTCGTTGTC 59.611 52.381 0.00 0.00 42.10 3.18
198 199 1.670674 GGCATCGTAAGTCGTTGTCCA 60.671 52.381 0.00 0.00 40.20 4.02
199 200 1.654105 GCATCGTAAGTCGTTGTCCAG 59.346 52.381 0.00 0.00 40.20 3.86
202 203 3.482722 TCGTAAGTCGTTGTCCAGATC 57.517 47.619 0.00 0.00 40.80 2.75
203 204 2.159612 TCGTAAGTCGTTGTCCAGATCG 60.160 50.000 0.00 0.00 40.80 3.69
205 206 2.065993 AAGTCGTTGTCCAGATCGTG 57.934 50.000 0.00 0.00 0.00 4.35
206 207 0.388649 AGTCGTTGTCCAGATCGTGC 60.389 55.000 0.00 0.00 0.00 5.34
207 208 1.443702 TCGTTGTCCAGATCGTGCG 60.444 57.895 0.00 0.00 0.00 5.34
208 209 1.443702 CGTTGTCCAGATCGTGCGA 60.444 57.895 0.00 0.00 0.00 5.10
209 210 1.406219 CGTTGTCCAGATCGTGCGAG 61.406 60.000 0.00 0.00 0.00 5.03
211 212 2.583593 GTCCAGATCGTGCGAGGC 60.584 66.667 0.00 0.00 0.00 4.70
213 214 2.279120 CCAGATCGTGCGAGGCTC 60.279 66.667 3.87 3.87 0.00 4.70
214 215 2.279120 CAGATCGTGCGAGGCTCC 60.279 66.667 9.32 2.37 0.00 4.70
216 217 3.889044 GATCGTGCGAGGCTCCGA 61.889 66.667 14.99 14.99 37.14 4.55
218 219 3.490793 ATCGTGCGAGGCTCCGATG 62.491 63.158 21.10 9.19 39.96 3.84
228 229 2.481212 GCTCCGATGCCATGTGAAA 58.519 52.632 0.00 0.00 0.00 2.69
231 232 2.618241 GCTCCGATGCCATGTGAAAATA 59.382 45.455 0.00 0.00 0.00 1.40
232 233 3.548818 GCTCCGATGCCATGTGAAAATAC 60.549 47.826 0.00 0.00 0.00 1.89
233 234 3.879295 CTCCGATGCCATGTGAAAATACT 59.121 43.478 0.00 0.00 0.00 2.12
236 237 3.003689 CGATGCCATGTGAAAATACTCCC 59.996 47.826 0.00 0.00 0.00 4.30
237 238 3.737559 TGCCATGTGAAAATACTCCCT 57.262 42.857 0.00 0.00 0.00 4.20
239 240 2.952310 GCCATGTGAAAATACTCCCTCC 59.048 50.000 0.00 0.00 0.00 4.30
240 241 3.624707 GCCATGTGAAAATACTCCCTCCA 60.625 47.826 0.00 0.00 0.00 3.86
243 244 4.503714 TGTGAAAATACTCCCTCCATCC 57.496 45.455 0.00 0.00 0.00 3.51
244 245 4.111577 TGTGAAAATACTCCCTCCATCCT 58.888 43.478 0.00 0.00 0.00 3.24
246 247 5.015178 TGTGAAAATACTCCCTCCATCCTTT 59.985 40.000 0.00 0.00 0.00 3.11
249 250 7.614192 GTGAAAATACTCCCTCCATCCTTTAAA 59.386 37.037 0.00 0.00 0.00 1.52
272 273 6.391227 AGGATGTACTTTCAACTTTGTTGG 57.609 37.500 10.05 0.00 0.00 3.77
273 274 6.126409 AGGATGTACTTTCAACTTTGTTGGA 58.874 36.000 10.05 0.00 0.00 3.53
276 277 4.642885 TGTACTTTCAACTTTGTTGGAGGG 59.357 41.667 10.05 2.57 0.00 4.30
277 278 2.430694 ACTTTCAACTTTGTTGGAGGGC 59.569 45.455 10.05 0.00 0.00 5.19
278 279 1.408969 TTCAACTTTGTTGGAGGGCC 58.591 50.000 10.05 0.00 0.00 5.80
279 280 0.260230 TCAACTTTGTTGGAGGGCCA 59.740 50.000 6.18 0.00 44.17 5.36
290 291 2.274542 TGGAGGGCCAAACTATCTCAA 58.725 47.619 6.18 0.00 42.49 3.02
291 292 2.647299 TGGAGGGCCAAACTATCTCAAA 59.353 45.455 6.18 0.00 42.49 2.69
293 294 3.308473 GGAGGGCCAAACTATCTCAAAGT 60.308 47.826 6.18 0.00 0.00 2.66
294 295 4.336280 GAGGGCCAAACTATCTCAAAGTT 58.664 43.478 6.18 0.00 38.82 2.66
295 296 4.740902 AGGGCCAAACTATCTCAAAGTTT 58.259 39.130 6.18 0.00 45.64 2.66
304 305 8.608844 AAACTATCTCAAAGTTTGATCGAGTT 57.391 30.769 18.35 20.46 43.66 3.01
305 306 8.608844 AACTATCTCAAAGTTTGATCGAGTTT 57.391 30.769 18.35 5.88 39.30 2.66
306 307 8.023050 ACTATCTCAAAGTTTGATCGAGTTTG 57.977 34.615 18.35 17.00 39.30 2.93
308 309 6.048073 TCTCAAAGTTTGATCGAGTTTGTG 57.952 37.500 18.35 18.43 39.30 3.33
320 321 9.502145 TTGATCGAGTTTGTGCAAAAATATATC 57.498 29.630 5.11 7.47 31.33 1.63
322 323 7.297229 TCGAGTTTGTGCAAAAATATATCGA 57.703 32.000 19.35 19.35 31.33 3.59
325 326 9.009327 CGAGTTTGTGCAAAAATATATCGATTT 57.991 29.630 17.34 0.00 31.33 2.17
408 409 9.859427 ACTAATTTGATGACATAAATGTTGGTG 57.141 29.630 0.00 0.00 41.95 4.17
409 410 9.859427 CTAATTTGATGACATAAATGTTGGTGT 57.141 29.630 0.00 0.00 41.95 4.16
464 465 8.445275 AAAGTTTGACTTTTCAACAAAGGTTT 57.555 26.923 0.44 0.00 45.38 3.27
488 489 7.432350 TTTTTGCATGACTTTTCAACAAAGT 57.568 28.000 0.00 0.00 40.32 2.66
490 491 6.406093 TTGCATGACTTTTCAACAAAGTTG 57.594 33.333 0.00 3.58 40.27 3.16
491 492 5.718146 TGCATGACTTTTCAACAAAGTTGA 58.282 33.333 8.39 8.39 40.27 3.18
492 493 6.162079 TGCATGACTTTTCAACAAAGTTGAA 58.838 32.000 18.33 18.33 40.27 2.69
493 494 6.648310 TGCATGACTTTTCAACAAAGTTGAAA 59.352 30.769 25.59 25.59 43.99 2.69
494 495 7.148606 TGCATGACTTTTCAACAAAGTTGAAAG 60.149 33.333 26.88 23.27 45.55 2.62
495 496 7.148590 GCATGACTTTTCAACAAAGTTGAAAGT 60.149 33.333 26.88 25.22 45.55 2.66
498 499 8.353684 TGACTTTTCAACAAAGTTGAAAGTACA 58.646 29.630 26.88 23.70 45.55 2.90
499 500 8.515473 ACTTTTCAACAAAGTTGAAAGTACAC 57.485 30.769 26.88 0.00 45.55 2.90
501 502 9.834628 CTTTTCAACAAAGTTGAAAGTACACTA 57.165 29.630 26.88 15.78 45.55 2.74
505 506 9.997482 TCAACAAAGTTGAAAGTACACTATTTC 57.003 29.630 9.91 0.00 36.24 2.17
508 509 9.391006 ACAAAGTTGAAAGTACACTATTTCAGA 57.609 29.630 7.73 0.00 43.97 3.27
518 519 7.918076 AGTACACTATTTCAGAAATGAAGGGA 58.082 34.615 17.38 0.09 32.38 4.20
519 520 8.043710 AGTACACTATTTCAGAAATGAAGGGAG 58.956 37.037 17.38 8.67 32.38 4.30
520 521 6.784031 ACACTATTTCAGAAATGAAGGGAGT 58.216 36.000 17.38 9.25 32.38 3.85
521 522 7.918076 ACACTATTTCAGAAATGAAGGGAGTA 58.082 34.615 17.38 0.00 32.38 2.59
522 523 8.043710 ACACTATTTCAGAAATGAAGGGAGTAG 58.956 37.037 17.38 6.77 32.38 2.57
523 524 8.260818 CACTATTTCAGAAATGAAGGGAGTAGA 58.739 37.037 17.38 0.00 32.38 2.59
525 526 4.720649 TCAGAAATGAAGGGAGTAGACG 57.279 45.455 0.00 0.00 0.00 4.18
526 527 4.341487 TCAGAAATGAAGGGAGTAGACGA 58.659 43.478 0.00 0.00 0.00 4.20
528 529 3.128938 AGAAATGAAGGGAGTAGACGACG 59.871 47.826 0.00 0.00 0.00 5.12
529 530 0.739561 ATGAAGGGAGTAGACGACGC 59.260 55.000 0.00 0.00 0.00 5.19
531 532 1.364626 GAAGGGAGTAGACGACGCGA 61.365 60.000 15.93 0.00 0.00 5.87
533 534 0.105593 AGGGAGTAGACGACGCGATA 59.894 55.000 15.93 0.00 0.00 2.92
538 539 1.596727 AGTAGACGACGCGATAGTTCC 59.403 52.381 15.93 0.00 39.35 3.62
549 550 3.621794 GCGATAGTTCCATGCATCAAAC 58.378 45.455 11.19 11.19 39.35 2.93
555 556 4.571919 AGTTCCATGCATCAAACCAAATG 58.428 39.130 14.26 0.00 0.00 2.32
570 571 6.506500 AACCAAATGCAAACTCTCTCTATG 57.493 37.500 0.00 0.00 0.00 2.23
571 572 5.564550 ACCAAATGCAAACTCTCTCTATGT 58.435 37.500 0.00 0.00 0.00 2.29
575 576 7.281774 CCAAATGCAAACTCTCTCTATGTGTAT 59.718 37.037 0.00 0.00 0.00 2.29
601 602 4.129737 GCTAGGGTCGCGTGCAGA 62.130 66.667 5.77 0.00 0.00 4.26
657 658 6.462500 TGCTAACCACATGCAAATTACAAAT 58.538 32.000 0.00 0.00 33.48 2.32
662 663 7.344910 ACCACATGCAAATTACAAATTTACG 57.655 32.000 0.00 0.00 0.00 3.18
819 824 0.620556 GGAGAGACAAATCTGGCCCA 59.379 55.000 0.00 0.00 34.34 5.36
836 841 1.202359 CCCATTTATTTCCGTTGGCCG 60.202 52.381 0.00 0.00 0.00 6.13
837 842 1.746220 CCATTTATTTCCGTTGGCCGA 59.254 47.619 0.00 0.00 39.56 5.54
839 844 2.188062 TTTATTTCCGTTGGCCGAGT 57.812 45.000 0.00 0.00 39.56 4.18
937 942 1.153667 CTGTCGCTCTTGCTCCTCC 60.154 63.158 0.00 0.00 36.97 4.30
986 1001 4.593864 CCCCTCGCGCCTAGCTTC 62.594 72.222 0.00 0.00 45.59 3.86
1236 1251 3.394836 ACCTGCGGCTTCTCCTCC 61.395 66.667 0.00 0.00 0.00 4.30
1289 1304 0.264359 CTCTCCATCTCCCAGGTCCT 59.736 60.000 0.00 0.00 0.00 3.85
1298 1333 1.280421 CTCCCAGGTCCTTCTTTGGAG 59.720 57.143 0.00 0.00 36.69 3.86
1323 1358 2.295349 CCATGCTTGCTCTGTTTTGACT 59.705 45.455 0.00 0.00 0.00 3.41
1337 1372 6.986817 TCTGTTTTGACTTCTACTTCTTGGAG 59.013 38.462 0.00 0.00 0.00 3.86
1360 1395 7.481798 GGAGTAAAAATGTTGATTAGCTTCGTG 59.518 37.037 0.00 0.00 0.00 4.35
1361 1396 7.871853 AGTAAAAATGTTGATTAGCTTCGTGT 58.128 30.769 0.00 0.00 0.00 4.49
1529 1566 5.918426 ACTACTTAAGCCAGAGTTAGGAC 57.082 43.478 1.29 0.00 0.00 3.85
1538 1575 3.617775 GCCAGAGTTAGGACTTGACCTTC 60.618 52.174 0.00 0.00 41.00 3.46
1546 1583 7.746703 AGTTAGGACTTGACCTTCTACAATTT 58.253 34.615 0.00 0.00 41.00 1.82
1585 1622 3.305094 GCTACTTAATTAGTTGCGTGCGA 59.695 43.478 2.24 0.00 43.71 5.10
1587 1624 2.414138 ACTTAATTAGTTGCGTGCGACC 59.586 45.455 8.59 0.00 31.29 4.79
1589 1626 0.321298 AATTAGTTGCGTGCGACCCT 60.321 50.000 8.59 0.00 0.00 4.34
1592 1629 0.961857 TAGTTGCGTGCGACCCTCTA 60.962 55.000 8.59 0.00 0.00 2.43
1602 1639 1.671328 GCGACCCTCTAAATTTGGAGC 59.329 52.381 22.45 10.67 34.79 4.70
1615 1652 2.284754 TTGGAGCTGGTGTTGCAATA 57.715 45.000 0.59 0.00 30.82 1.90
1666 1703 6.378710 AAAGTTCAGGCTTCTGTTTTACTC 57.621 37.500 0.00 0.00 39.45 2.59
1746 1788 2.362169 TTCAGTCGTTGATGATCGCA 57.638 45.000 0.00 0.00 35.27 5.10
1758 1800 0.249447 TGATCGCAGCGATTCCGAAT 60.249 50.000 30.30 8.25 47.00 3.34
1805 1847 4.700268 TTGCCAATGTATGACATGACAC 57.300 40.909 0.00 0.00 37.97 3.67
1811 1853 2.192624 TGTATGACATGACACGATGCG 58.807 47.619 0.00 0.00 0.00 4.73
1833 1875 3.860754 GCCCACATGTTTTCCAAGCTTAC 60.861 47.826 0.00 0.00 0.00 2.34
1924 1975 1.200020 CTCGAAGGATTTGGTGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
1933 1984 2.481289 TTGGTGTTGGCGTCATATCA 57.519 45.000 0.00 0.00 0.00 2.15
1936 1987 4.350368 TGGTGTTGGCGTCATATCATAT 57.650 40.909 0.00 0.00 0.00 1.78
2085 2157 4.883585 TGGATGCAGAATGGTCAATAGTTC 59.116 41.667 0.00 0.00 35.86 3.01
2228 2309 0.108233 CTCAGAGCACAAGAGGAGCC 60.108 60.000 0.00 0.00 0.00 4.70
2304 2385 3.961477 TTGTTCATGTCAAACTCACCG 57.039 42.857 0.00 0.00 0.00 4.94
2325 2406 4.391830 CCGTGCAGTTGTTCATTATGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
2390 3475 1.691196 TTGTTCCTTGGAGGTTGCTG 58.309 50.000 0.00 0.00 36.53 4.41
2444 3686 7.931407 CACCTATCATATTACTGCAGTTTGGTA 59.069 37.037 27.06 16.06 0.00 3.25
2451 3693 2.586425 ACTGCAGTTTGGTATTGCTGT 58.414 42.857 15.25 2.96 42.60 4.40
2519 5340 3.013921 TCATTAATTTCTGACACCCGGC 58.986 45.455 0.00 0.00 0.00 6.13
2522 5343 1.534729 AATTTCTGACACCCGGCTTC 58.465 50.000 0.00 0.00 0.00 3.86
2550 5372 5.124936 TGCAAATCTCTGTCATCCATTCTTG 59.875 40.000 0.00 0.00 0.00 3.02
2551 5373 5.125097 GCAAATCTCTGTCATCCATTCTTGT 59.875 40.000 0.00 0.00 0.00 3.16
2555 5377 4.406972 TCTCTGTCATCCATTCTTGTAGGG 59.593 45.833 0.00 0.00 0.00 3.53
2772 5610 0.819582 GGGGTTTCGAGACCGACATA 59.180 55.000 18.10 0.00 45.50 2.29
2801 5639 6.430451 CGGAAGTGAATGATATAAAGGCAAC 58.570 40.000 0.00 0.00 0.00 4.17
2808 5646 6.096705 TGAATGATATAAAGGCAACCACTTGG 59.903 38.462 0.00 0.00 42.17 3.61
2832 5672 8.310382 TGGACTCTTTTTCTCTCTCTTATTGAG 58.690 37.037 0.00 0.00 43.96 3.02
2926 5766 7.230712 TGTGTCACTCTTCTAGAAGTAACATCA 59.769 37.037 27.59 20.91 39.38 3.07
3094 5936 9.874205 ATATTTTTGGTCCATCACATACAAAAG 57.126 29.630 0.00 0.00 38.52 2.27
3151 5994 3.393472 GCAGATAGGAACTGGCCTG 57.607 57.895 8.29 8.29 41.52 4.85
3246 6089 5.574443 GTGAGTTATGCAGCATTTTCCTTTC 59.426 40.000 14.58 3.41 0.00 2.62
3247 6090 5.477984 TGAGTTATGCAGCATTTTCCTTTCT 59.522 36.000 14.58 1.20 0.00 2.52
3248 6091 6.658816 TGAGTTATGCAGCATTTTCCTTTCTA 59.341 34.615 14.58 0.00 0.00 2.10
3529 6413 4.402474 TCTCAATCGAAGTAGGAAGATGCA 59.598 41.667 0.00 0.00 0.00 3.96
3614 6531 9.567848 GTTTCATCTGTTTCTGAAGTACAAAAA 57.432 29.630 0.00 0.00 33.25 1.94
3767 6684 9.489084 GTTTTGAGGCCATTTAAGTTATCTTTT 57.511 29.630 5.01 0.00 35.36 2.27
4077 7070 8.523658 GTCTTAGCCTTTGATTCTGGTAAAAAT 58.476 33.333 0.00 0.00 0.00 1.82
4112 7109 3.411415 GCATTTTAAGATGCTGAGCGT 57.589 42.857 20.60 0.00 46.85 5.07
4215 7215 6.070251 TGTTACAGGACAATCTACCACATGAT 60.070 38.462 0.00 0.00 0.00 2.45
4232 7232 4.142359 ACATGATTCTCACTCGGACTACAC 60.142 45.833 0.00 0.00 0.00 2.90
4290 7290 5.550290 TGTCTGCAGTTAGATCATTTCACA 58.450 37.500 14.67 2.65 0.00 3.58
4435 7439 0.690411 AGCTGCTGGCCTCTCATAGT 60.690 55.000 3.32 0.00 43.05 2.12
4477 7481 2.681848 CCACAATTCAGAGAGATGCCAC 59.318 50.000 0.00 0.00 0.00 5.01
4493 7498 5.824624 AGATGCCACGAATAACAATTCAGAT 59.175 36.000 0.00 0.00 0.00 2.90
4523 7528 3.669536 TGAACTTCACAACCGATGCATA 58.330 40.909 0.00 0.00 0.00 3.14
4540 7545 6.735510 CGATGCATAAGCGAAATATTCTGAAG 59.264 38.462 0.00 0.00 46.23 3.02
4543 7548 6.017934 TGCATAAGCGAAATATTCTGAAGTCC 60.018 38.462 0.00 0.00 46.23 3.85
4581 7588 4.656100 TGAACATTTTCAGATCCTCCCA 57.344 40.909 0.00 0.00 36.79 4.37
4644 7651 0.687354 ACATGCTCACTTCCTTCGGT 59.313 50.000 0.00 0.00 0.00 4.69
4749 8028 6.674694 CTGACCAAGGATTAATTCTGTCTG 57.325 41.667 12.94 9.78 0.00 3.51
4756 8035 7.775093 CCAAGGATTAATTCTGTCTGAACCATA 59.225 37.037 0.00 0.00 37.52 2.74
4769 8049 5.858581 GTCTGAACCATAAAACTTGATGCAC 59.141 40.000 0.00 0.00 0.00 4.57
4937 8223 0.812811 TGAGCAATCTCATCCGCAGC 60.813 55.000 0.00 0.00 43.95 5.25
4990 8277 7.443272 GTGTAGCTCTTCAAGTTAGGGTAAAAA 59.557 37.037 0.00 0.00 0.00 1.94
5042 17202 1.219124 GGTCAGCGATCTTGGCTCA 59.781 57.895 0.00 0.00 39.08 4.26
5043 17203 0.809241 GGTCAGCGATCTTGGCTCAG 60.809 60.000 0.00 0.00 39.08 3.35
5044 17204 0.108424 GTCAGCGATCTTGGCTCAGT 60.108 55.000 0.00 0.00 39.08 3.41
5045 17205 0.108472 TCAGCGATCTTGGCTCAGTG 60.108 55.000 0.00 0.00 39.08 3.66
5046 17206 1.088340 CAGCGATCTTGGCTCAGTGG 61.088 60.000 0.00 0.00 39.08 4.00
5047 17207 2.467826 GCGATCTTGGCTCAGTGGC 61.468 63.158 0.00 0.00 42.18 5.01
5048 17208 1.220206 CGATCTTGGCTCAGTGGCT 59.780 57.895 4.00 0.00 42.34 4.75
5049 17209 0.809241 CGATCTTGGCTCAGTGGCTC 60.809 60.000 4.00 0.00 42.34 4.70
5154 17317 5.009610 TGTGTAAGACAAAGGCAGAAAATCC 59.990 40.000 0.00 0.00 0.00 3.01
5173 17336 9.429222 GAAAATCCTATTTTCAGCGGGAACGAA 62.429 40.741 16.44 0.00 45.54 3.85
5194 17357 2.359975 CCCCAGAAAGGCCGTGTC 60.360 66.667 0.00 0.00 35.39 3.67
5215 17383 3.449227 CCTGCCGAGGCTGTACGA 61.449 66.667 15.75 0.00 42.51 3.43
5216 17384 2.786495 CCTGCCGAGGCTGTACGAT 61.786 63.158 15.75 0.00 42.51 3.73
5222 17390 1.522569 GAGGCTGTACGATTGGGCT 59.477 57.895 0.00 0.00 37.30 5.19
5256 17425 4.207165 CCCAGTCTTCTTTCTTGGTTTCA 58.793 43.478 0.00 0.00 0.00 2.69
5257 17426 4.644685 CCCAGTCTTCTTTCTTGGTTTCAA 59.355 41.667 0.00 0.00 0.00 2.69
5295 17466 9.842775 ATCAAGCTAATCAAATAGATTGTCTCA 57.157 29.630 10.87 0.00 46.24 3.27
5296 17467 9.671279 TCAAGCTAATCAAATAGATTGTCTCAA 57.329 29.630 10.87 0.00 46.24 3.02
5368 17539 0.599466 TGCGCAGATCAGCATAGCTC 60.599 55.000 5.66 0.00 36.40 4.09
5397 17568 1.768870 GGTATAAGAGCAGGGGCAAGA 59.231 52.381 0.00 0.00 44.61 3.02
5400 17571 2.247699 TAAGAGCAGGGGCAAGACTA 57.752 50.000 0.00 0.00 44.61 2.59
5560 17731 1.685820 GCTTGCCACTAGGGTCCTT 59.314 57.895 0.00 0.00 39.65 3.36
5562 17733 0.693049 CTTGCCACTAGGGTCCTTGT 59.307 55.000 0.00 0.00 39.65 3.16
5567 17738 2.253610 CCACTAGGGTCCTTGTGTGTA 58.746 52.381 22.93 0.00 44.27 2.90
5572 17743 1.648116 GGGTCCTTGTGTGTACCCTA 58.352 55.000 0.00 0.00 46.80 3.53
5599 17770 3.319198 CTACAGCCCGGGTGTGGT 61.319 66.667 28.75 20.73 44.23 4.16
5615 17786 0.692419 TGGTGCACCCCAACCAAAAT 60.692 50.000 32.62 0.00 34.29 1.82
5625 17796 6.293900 GCACCCCAACCAAAATCAAATTAAAG 60.294 38.462 0.00 0.00 0.00 1.85
5727 17900 3.479489 TCAGTCAAATTGAGCTCTTGCA 58.521 40.909 16.19 0.00 42.74 4.08
5728 17901 3.884693 TCAGTCAAATTGAGCTCTTGCAA 59.115 39.130 16.19 0.00 42.74 4.08
5729 17902 4.023450 TCAGTCAAATTGAGCTCTTGCAAG 60.023 41.667 20.81 20.81 42.74 4.01
5755 17929 7.059156 AGCTGAACCTGATCAAATAGCTAATT 58.941 34.615 14.28 0.00 28.74 1.40
5757 17931 8.840321 GCTGAACCTGATCAAATAGCTAATTAA 58.160 33.333 0.00 0.00 0.00 1.40
5764 17938 9.964253 CTGATCAAATAGCTAATTAATACTGCG 57.036 33.333 0.00 0.00 0.00 5.18
5765 17939 8.443160 TGATCAAATAGCTAATTAATACTGCGC 58.557 33.333 0.00 0.00 0.00 6.09
5766 17940 7.129109 TCAAATAGCTAATTAATACTGCGCC 57.871 36.000 4.18 0.00 0.00 6.53
5767 17941 6.934645 TCAAATAGCTAATTAATACTGCGCCT 59.065 34.615 4.18 0.00 0.00 5.52
5768 17942 8.092068 TCAAATAGCTAATTAATACTGCGCCTA 58.908 33.333 4.18 0.00 0.00 3.93
5769 17943 8.883731 CAAATAGCTAATTAATACTGCGCCTAT 58.116 33.333 4.18 0.00 0.00 2.57
5777 18013 2.293677 TACTGCGCCTATGTTCACTG 57.706 50.000 4.18 0.00 0.00 3.66
5778 18014 1.021390 ACTGCGCCTATGTTCACTGC 61.021 55.000 4.18 0.00 0.00 4.40
5782 18018 1.635844 CGCCTATGTTCACTGCGTAA 58.364 50.000 0.00 0.00 40.33 3.18
5790 18026 4.054780 TGTTCACTGCGTAAGAAACTCT 57.945 40.909 0.00 0.00 43.02 3.24
5799 18035 7.855904 CACTGCGTAAGAAACTCTTAAACATTT 59.144 33.333 0.00 0.00 40.30 2.32
5826 18062 9.653287 TTTGTAGACAAGTATTATGAAGTCTGG 57.347 33.333 0.00 0.00 37.00 3.86
5827 18063 8.362464 TGTAGACAAGTATTATGAAGTCTGGT 57.638 34.615 0.00 0.00 37.00 4.00
5828 18064 8.251026 TGTAGACAAGTATTATGAAGTCTGGTG 58.749 37.037 0.00 0.00 37.00 4.17
5829 18065 6.109359 AGACAAGTATTATGAAGTCTGGTGC 58.891 40.000 0.00 0.00 35.24 5.01
5830 18066 5.804639 ACAAGTATTATGAAGTCTGGTGCA 58.195 37.500 0.00 0.00 0.00 4.57
5831 18067 6.418101 ACAAGTATTATGAAGTCTGGTGCAT 58.582 36.000 0.00 0.00 0.00 3.96
5832 18068 7.564793 ACAAGTATTATGAAGTCTGGTGCATA 58.435 34.615 0.00 0.00 0.00 3.14
5833 18069 7.495934 ACAAGTATTATGAAGTCTGGTGCATAC 59.504 37.037 0.00 0.00 0.00 2.39
5834 18070 7.366847 AGTATTATGAAGTCTGGTGCATACT 57.633 36.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.194772 GTCAAGCTAAGTCGTGGCAAC 59.805 52.381 0.00 0.00 0.00 4.17
3 4 1.508632 TTGTCAAGCTAAGTCGTGGC 58.491 50.000 0.00 0.00 0.00 5.01
5 6 3.123621 GGTCATTGTCAAGCTAAGTCGTG 59.876 47.826 0.00 0.00 0.00 4.35
6 7 3.244078 TGGTCATTGTCAAGCTAAGTCGT 60.244 43.478 0.00 0.00 0.00 4.34
7 8 3.325870 TGGTCATTGTCAAGCTAAGTCG 58.674 45.455 0.00 0.00 0.00 4.18
10 11 4.095483 GTGGATGGTCATTGTCAAGCTAAG 59.905 45.833 0.00 0.00 0.00 2.18
11 12 4.009675 GTGGATGGTCATTGTCAAGCTAA 58.990 43.478 0.00 0.00 0.00 3.09
13 14 2.224843 TGTGGATGGTCATTGTCAAGCT 60.225 45.455 0.00 0.00 0.00 3.74
14 15 2.095059 GTGTGGATGGTCATTGTCAAGC 60.095 50.000 0.00 0.00 0.00 4.01
15 16 2.489329 GGTGTGGATGGTCATTGTCAAG 59.511 50.000 0.00 0.00 0.00 3.02
17 18 1.423161 TGGTGTGGATGGTCATTGTCA 59.577 47.619 0.00 0.00 0.00 3.58
18 19 2.198827 TGGTGTGGATGGTCATTGTC 57.801 50.000 0.00 0.00 0.00 3.18
19 20 2.726821 GATGGTGTGGATGGTCATTGT 58.273 47.619 0.00 0.00 0.00 2.71
21 22 2.018644 GCGATGGTGTGGATGGTCATT 61.019 52.381 0.00 0.00 0.00 2.57
22 23 0.464373 GCGATGGTGTGGATGGTCAT 60.464 55.000 0.00 0.00 0.00 3.06
23 24 1.078497 GCGATGGTGTGGATGGTCA 60.078 57.895 0.00 0.00 0.00 4.02
26 27 2.896854 CGGCGATGGTGTGGATGG 60.897 66.667 0.00 0.00 0.00 3.51
27 28 2.896854 CCGGCGATGGTGTGGATG 60.897 66.667 9.30 0.00 0.00 3.51
36 37 0.811219 ACATCATGACACCGGCGATG 60.811 55.000 9.30 2.86 39.47 3.84
37 38 0.750249 TACATCATGACACCGGCGAT 59.250 50.000 9.30 0.00 0.00 4.58
39 40 1.490693 GCTACATCATGACACCGGCG 61.491 60.000 0.00 0.00 0.00 6.46
40 41 1.160329 GGCTACATCATGACACCGGC 61.160 60.000 0.00 0.00 0.00 6.13
41 42 0.177836 TGGCTACATCATGACACCGG 59.822 55.000 0.00 0.00 0.00 5.28
42 43 1.136891 TCTGGCTACATCATGACACCG 59.863 52.381 0.00 0.00 0.00 4.94
44 45 2.547211 GCATCTGGCTACATCATGACAC 59.453 50.000 0.00 0.00 40.25 3.67
45 46 2.171027 TGCATCTGGCTACATCATGACA 59.829 45.455 0.00 0.00 45.15 3.58
47 48 2.701951 TCTGCATCTGGCTACATCATGA 59.298 45.455 0.00 0.00 45.15 3.07
53 54 1.117994 CTCCTCTGCATCTGGCTACA 58.882 55.000 0.00 0.00 45.15 2.74
54 55 0.249826 GCTCCTCTGCATCTGGCTAC 60.250 60.000 0.00 0.00 45.15 3.58
55 56 1.406065 GGCTCCTCTGCATCTGGCTA 61.406 60.000 0.00 0.00 45.15 3.93
57 58 2.203181 GGCTCCTCTGCATCTGGC 60.203 66.667 0.00 0.00 45.13 4.85
58 59 2.108566 CGGCTCCTCTGCATCTGG 59.891 66.667 0.00 0.00 34.04 3.86
60 61 2.898738 CACGGCTCCTCTGCATCT 59.101 61.111 0.00 0.00 34.04 2.90
61 62 2.894387 GCACGGCTCCTCTGCATC 60.894 66.667 0.00 0.00 34.04 3.91
62 63 2.753009 TTTGCACGGCTCCTCTGCAT 62.753 55.000 8.40 0.00 40.52 3.96
64 65 2.669569 TTTGCACGGCTCCTCTGC 60.670 61.111 0.00 0.00 0.00 4.26
65 66 1.597854 TGTTTGCACGGCTCCTCTG 60.598 57.895 0.00 0.00 0.00 3.35
75 76 0.953727 TGCCATCTCAGTGTTTGCAC 59.046 50.000 0.00 0.00 45.57 4.57
84 85 1.534163 CACACAACACTGCCATCTCAG 59.466 52.381 0.00 0.00 39.86 3.35
85 86 1.134128 ACACACAACACTGCCATCTCA 60.134 47.619 0.00 0.00 0.00 3.27
86 87 1.532868 GACACACAACACTGCCATCTC 59.467 52.381 0.00 0.00 0.00 2.75
88 89 0.235665 CGACACACAACACTGCCATC 59.764 55.000 0.00 0.00 0.00 3.51
90 91 1.078778 ACGACACACAACACTGCCA 60.079 52.632 0.00 0.00 0.00 4.92
91 92 1.351707 CACGACACACAACACTGCC 59.648 57.895 0.00 0.00 0.00 4.85
92 93 1.297598 GCACGACACACAACACTGC 60.298 57.895 0.00 0.00 0.00 4.40
94 95 3.808036 GGCACGACACACAACACT 58.192 55.556 0.00 0.00 0.00 3.55
107 108 1.285950 GGAAGCAAAACTCCGGCAC 59.714 57.895 0.00 0.00 0.00 5.01
108 109 1.901464 GGGAAGCAAAACTCCGGCA 60.901 57.895 0.00 0.00 0.00 5.69
109 110 2.962569 GGGAAGCAAAACTCCGGC 59.037 61.111 0.00 0.00 0.00 6.13
112 113 0.960861 CCCTCGGGAAGCAAAACTCC 60.961 60.000 0.00 0.00 37.50 3.85
113 114 1.587043 GCCCTCGGGAAGCAAAACTC 61.587 60.000 6.08 0.00 37.50 3.01
115 116 2.962569 GCCCTCGGGAAGCAAAAC 59.037 61.111 6.08 0.00 37.50 2.43
121 122 3.854669 ATGCTCGCCCTCGGGAAG 61.855 66.667 6.08 3.39 38.83 3.46
131 132 3.869272 CTCCAACGCCATGCTCGC 61.869 66.667 5.65 0.00 0.00 5.03
132 133 3.197790 CCTCCAACGCCATGCTCG 61.198 66.667 4.39 4.39 0.00 5.03
140 141 4.162690 ATCTCCCGCCTCCAACGC 62.163 66.667 0.00 0.00 0.00 4.84
142 143 2.190578 CCATCTCCCGCCTCCAAC 59.809 66.667 0.00 0.00 0.00 3.77
143 144 2.285368 ACCATCTCCCGCCTCCAA 60.285 61.111 0.00 0.00 0.00 3.53
145 146 2.764128 TCACCATCTCCCGCCTCC 60.764 66.667 0.00 0.00 0.00 4.30
147 148 1.074926 ATCTCACCATCTCCCGCCT 60.075 57.895 0.00 0.00 0.00 5.52
148 149 1.369321 GATCTCACCATCTCCCGCC 59.631 63.158 0.00 0.00 0.00 6.13
149 150 1.118356 AGGATCTCACCATCTCCCGC 61.118 60.000 0.00 0.00 0.00 6.13
151 152 2.896685 CAGTAGGATCTCACCATCTCCC 59.103 54.545 0.00 0.00 0.00 4.30
152 153 3.838565 TCAGTAGGATCTCACCATCTCC 58.161 50.000 0.00 0.00 0.00 3.71
167 168 3.119101 ACTTACGATGCCACCTTCAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
168 169 2.829720 ACTTACGATGCCACCTTCAGTA 59.170 45.455 0.00 0.00 0.00 2.74
170 171 2.271800 GACTTACGATGCCACCTTCAG 58.728 52.381 0.00 0.00 0.00 3.02
172 173 1.278238 CGACTTACGATGCCACCTTC 58.722 55.000 0.00 0.00 45.77 3.46
174 175 0.606604 AACGACTTACGATGCCACCT 59.393 50.000 0.00 0.00 45.77 4.00
177 178 1.670674 GGACAACGACTTACGATGCCA 60.671 52.381 0.00 0.00 46.09 4.92
178 179 0.997196 GGACAACGACTTACGATGCC 59.003 55.000 0.00 0.00 46.09 4.40
179 180 1.654105 CTGGACAACGACTTACGATGC 59.346 52.381 0.00 0.00 46.09 3.91
181 182 3.487042 CGATCTGGACAACGACTTACGAT 60.487 47.826 0.00 0.00 45.77 3.73
182 183 2.159612 CGATCTGGACAACGACTTACGA 60.160 50.000 0.00 0.00 45.77 3.43
184 185 2.915463 CACGATCTGGACAACGACTTAC 59.085 50.000 0.00 0.00 0.00 2.34
186 187 1.935300 GCACGATCTGGACAACGACTT 60.935 52.381 0.00 0.00 0.00 3.01
188 189 1.674611 CGCACGATCTGGACAACGAC 61.675 60.000 0.00 0.00 0.00 4.34
190 191 1.406219 CTCGCACGATCTGGACAACG 61.406 60.000 0.00 0.00 0.00 4.10
191 192 1.078759 CCTCGCACGATCTGGACAAC 61.079 60.000 0.00 0.00 0.00 3.32
192 193 1.215382 CCTCGCACGATCTGGACAA 59.785 57.895 0.00 0.00 0.00 3.18
193 194 2.885113 CCTCGCACGATCTGGACA 59.115 61.111 0.00 0.00 0.00 4.02
195 196 2.755876 AGCCTCGCACGATCTGGA 60.756 61.111 1.40 0.00 0.00 3.86
196 197 2.279120 GAGCCTCGCACGATCTGG 60.279 66.667 0.00 0.00 0.00 3.86
198 199 3.893763 CGGAGCCTCGCACGATCT 61.894 66.667 0.00 0.00 34.23 2.75
199 200 3.200887 ATCGGAGCCTCGCACGATC 62.201 63.158 9.46 0.00 43.33 3.69
211 212 3.879295 AGTATTTTCACATGGCATCGGAG 59.121 43.478 0.00 0.00 0.00 4.63
213 214 3.003689 GGAGTATTTTCACATGGCATCGG 59.996 47.826 0.00 0.00 0.00 4.18
214 215 3.003689 GGGAGTATTTTCACATGGCATCG 59.996 47.826 0.00 0.00 0.00 3.84
216 217 4.210331 GAGGGAGTATTTTCACATGGCAT 58.790 43.478 0.00 0.00 0.00 4.40
218 219 2.952310 GGAGGGAGTATTTTCACATGGC 59.048 50.000 0.00 0.00 0.00 4.40
219 220 4.235079 TGGAGGGAGTATTTTCACATGG 57.765 45.455 0.00 0.00 0.00 3.66
220 221 4.823989 GGATGGAGGGAGTATTTTCACATG 59.176 45.833 0.00 0.00 0.00 3.21
222 223 4.111577 AGGATGGAGGGAGTATTTTCACA 58.888 43.478 0.00 0.00 0.00 3.58
223 224 4.779993 AGGATGGAGGGAGTATTTTCAC 57.220 45.455 0.00 0.00 0.00 3.18
225 226 8.226819 CTTTAAAGGATGGAGGGAGTATTTTC 57.773 38.462 7.37 0.00 0.00 2.29
246 247 8.410141 CCAACAAAGTTGAAAGTACATCCTTTA 58.590 33.333 11.19 0.00 34.87 1.85
249 250 6.126409 TCCAACAAAGTTGAAAGTACATCCT 58.874 36.000 11.19 0.00 0.00 3.24
251 252 6.438763 CCTCCAACAAAGTTGAAAGTACATC 58.561 40.000 11.19 0.00 0.00 3.06
254 255 4.499188 GCCCTCCAACAAAGTTGAAAGTAC 60.499 45.833 11.19 0.00 0.00 2.73
256 257 2.430694 GCCCTCCAACAAAGTTGAAAGT 59.569 45.455 11.19 0.00 0.00 2.66
257 258 2.224042 GGCCCTCCAACAAAGTTGAAAG 60.224 50.000 11.19 7.99 0.00 2.62
259 260 1.342474 TGGCCCTCCAACAAAGTTGAA 60.342 47.619 11.19 0.00 39.99 2.69
261 262 1.118838 TTGGCCCTCCAACAAAGTTG 58.881 50.000 0.00 3.00 46.89 3.16
270 271 1.965414 TGAGATAGTTTGGCCCTCCA 58.035 50.000 0.00 0.00 41.55 3.86
272 273 3.956744 ACTTTGAGATAGTTTGGCCCTC 58.043 45.455 0.00 0.00 0.00 4.30
273 274 4.388577 AACTTTGAGATAGTTTGGCCCT 57.611 40.909 0.00 0.00 32.06 5.19
279 280 8.608844 AACTCGATCAAACTTTGAGATAGTTT 57.391 30.769 9.97 0.00 44.38 2.66
282 283 7.954248 CACAAACTCGATCAAACTTTGAGATAG 59.046 37.037 9.97 8.62 43.98 2.08
283 284 7.571244 GCACAAACTCGATCAAACTTTGAGATA 60.571 37.037 9.97 0.00 43.98 1.98
284 285 6.662616 CACAAACTCGATCAAACTTTGAGAT 58.337 36.000 9.97 0.00 43.98 2.75
286 287 4.672413 GCACAAACTCGATCAAACTTTGAG 59.328 41.667 9.97 0.00 43.98 3.02
290 291 4.630894 TTGCACAAACTCGATCAAACTT 57.369 36.364 0.00 0.00 0.00 2.66
291 292 4.630894 TTTGCACAAACTCGATCAAACT 57.369 36.364 0.00 0.00 0.00 2.66
293 294 9.853555 ATATATTTTTGCACAAACTCGATCAAA 57.146 25.926 0.00 0.00 0.00 2.69
294 295 9.502145 GATATATTTTTGCACAAACTCGATCAA 57.498 29.630 0.00 0.00 0.00 2.57
295 296 7.850492 CGATATATTTTTGCACAAACTCGATCA 59.150 33.333 0.00 0.00 0.00 2.92
296 297 8.061857 TCGATATATTTTTGCACAAACTCGATC 58.938 33.333 14.71 9.13 0.00 3.69
298 299 7.297229 TCGATATATTTTTGCACAAACTCGA 57.703 32.000 14.71 14.71 0.00 4.04
438 439 8.898761 AAACCTTTGTTGAAAAGTCAAACTTTT 58.101 25.926 15.59 15.59 45.70 2.27
439 440 8.445275 AAACCTTTGTTGAAAAGTCAAACTTT 57.555 26.923 0.00 0.00 45.29 2.66
440 441 8.445275 AAAACCTTTGTTGAAAAGTCAAACTT 57.555 26.923 0.00 0.00 45.29 2.66
441 442 8.445275 AAAAACCTTTGTTGAAAAGTCAAACT 57.555 26.923 0.00 0.00 45.29 2.66
464 465 7.432350 ACTTTGTTGAAAAGTCATGCAAAAA 57.568 28.000 0.00 0.00 37.95 1.94
468 469 5.718146 TCAACTTTGTTGAAAAGTCATGCA 58.282 33.333 10.25 0.00 39.36 3.96
469 470 6.645700 TTCAACTTTGTTGAAAAGTCATGC 57.354 33.333 19.44 0.00 39.36 4.06
470 471 8.243289 ACTTTCAACTTTGTTGAAAAGTCATG 57.757 30.769 27.35 20.30 44.67 3.07
471 472 9.353999 GTACTTTCAACTTTGTTGAAAAGTCAT 57.646 29.630 27.35 17.57 44.67 3.06
473 474 8.635983 GTGTACTTTCAACTTTGTTGAAAAGTC 58.364 33.333 27.35 21.46 44.67 3.01
474 475 8.357402 AGTGTACTTTCAACTTTGTTGAAAAGT 58.643 29.630 27.35 26.03 44.67 2.66
475 476 8.742554 AGTGTACTTTCAACTTTGTTGAAAAG 57.257 30.769 27.35 23.45 44.67 2.27
479 480 9.997482 GAAATAGTGTACTTTCAACTTTGTTGA 57.003 29.630 8.81 8.81 32.77 3.18
480 481 9.781834 TGAAATAGTGTACTTTCAACTTTGTTG 57.218 29.630 5.74 4.25 38.17 3.33
482 483 9.391006 TCTGAAATAGTGTACTTTCAACTTTGT 57.609 29.630 8.74 0.00 39.97 2.83
491 492 9.014297 CCCTTCATTTCTGAAATAGTGTACTTT 57.986 33.333 14.78 0.00 40.78 2.66
492 493 8.383175 TCCCTTCATTTCTGAAATAGTGTACTT 58.617 33.333 14.78 0.00 40.78 2.24
493 494 7.918076 TCCCTTCATTTCTGAAATAGTGTACT 58.082 34.615 14.78 0.00 40.78 2.73
494 495 7.824779 ACTCCCTTCATTTCTGAAATAGTGTAC 59.175 37.037 14.78 0.00 40.78 2.90
495 496 7.918076 ACTCCCTTCATTTCTGAAATAGTGTA 58.082 34.615 14.78 0.00 40.78 2.90
498 499 8.261522 GTCTACTCCCTTCATTTCTGAAATAGT 58.738 37.037 14.78 14.76 40.78 2.12
499 500 7.436673 CGTCTACTCCCTTCATTTCTGAAATAG 59.563 40.741 14.78 9.95 40.78 1.73
501 502 6.070767 TCGTCTACTCCCTTCATTTCTGAAAT 60.071 38.462 9.76 9.76 40.78 2.17
505 506 4.425520 GTCGTCTACTCCCTTCATTTCTG 58.574 47.826 0.00 0.00 0.00 3.02
508 509 2.416972 GCGTCGTCTACTCCCTTCATTT 60.417 50.000 0.00 0.00 0.00 2.32
509 510 1.134560 GCGTCGTCTACTCCCTTCATT 59.865 52.381 0.00 0.00 0.00 2.57
513 514 0.747283 ATCGCGTCGTCTACTCCCTT 60.747 55.000 5.77 0.00 0.00 3.95
514 515 0.105593 TATCGCGTCGTCTACTCCCT 59.894 55.000 5.77 0.00 0.00 4.20
518 519 1.596727 GGAACTATCGCGTCGTCTACT 59.403 52.381 5.77 0.00 0.00 2.57
519 520 1.328680 TGGAACTATCGCGTCGTCTAC 59.671 52.381 5.77 0.00 0.00 2.59
520 521 1.655484 TGGAACTATCGCGTCGTCTA 58.345 50.000 5.77 0.00 0.00 2.59
521 522 1.022735 ATGGAACTATCGCGTCGTCT 58.977 50.000 5.77 0.00 0.00 4.18
522 523 1.121240 CATGGAACTATCGCGTCGTC 58.879 55.000 5.77 0.00 0.00 4.20
523 524 0.870307 GCATGGAACTATCGCGTCGT 60.870 55.000 5.77 0.00 0.00 4.34
525 526 1.457303 GATGCATGGAACTATCGCGTC 59.543 52.381 2.46 0.00 0.00 5.19
526 527 1.202521 TGATGCATGGAACTATCGCGT 60.203 47.619 2.46 0.00 0.00 6.01
528 529 3.548818 GGTTTGATGCATGGAACTATCGC 60.549 47.826 2.46 0.00 0.00 4.58
529 530 3.627123 TGGTTTGATGCATGGAACTATCG 59.373 43.478 2.46 0.00 0.00 2.92
531 532 5.999205 TTTGGTTTGATGCATGGAACTAT 57.001 34.783 2.46 0.00 0.00 2.12
533 534 4.571919 CATTTGGTTTGATGCATGGAACT 58.428 39.130 2.46 0.00 0.00 3.01
549 550 5.413833 ACACATAGAGAGAGTTTGCATTTGG 59.586 40.000 0.00 0.00 0.00 3.28
555 556 6.920758 CCACTATACACATAGAGAGAGTTTGC 59.079 42.308 0.00 0.00 38.03 3.68
570 571 2.249139 CCCTAGCCCTCCACTATACAC 58.751 57.143 0.00 0.00 0.00 2.90
571 572 1.864251 ACCCTAGCCCTCCACTATACA 59.136 52.381 0.00 0.00 0.00 2.29
575 576 1.229359 CGACCCTAGCCCTCCACTA 59.771 63.158 0.00 0.00 0.00 2.74
601 602 1.399714 TGTGGTTAGCGATCCGATCT 58.600 50.000 6.81 0.00 0.00 2.75
697 698 1.311859 CTGTGCCACATGTGTTGAGT 58.688 50.000 23.79 0.00 0.00 3.41
819 824 2.718563 ACTCGGCCAACGGAAATAAAT 58.281 42.857 2.24 0.00 44.45 1.40
937 942 2.516460 ATCGGAGGGAGACGACGG 60.516 66.667 0.00 0.00 42.39 4.79
986 1001 0.729140 GTTCATCGCCAAGCCAAACG 60.729 55.000 0.00 0.00 0.00 3.60
1194 1209 4.115199 AACTGGATGGGGCCGAGC 62.115 66.667 0.00 0.00 0.00 5.03
1298 1333 0.964358 AACAGAGCAAGCATGGAGGC 60.964 55.000 0.00 0.00 0.00 4.70
1323 1358 9.621629 TCAACATTTTTACTCCAAGAAGTAGAA 57.378 29.630 0.00 0.00 33.46 2.10
1337 1372 7.589954 ACACACGAAGCTAATCAACATTTTTAC 59.410 33.333 0.00 0.00 0.00 2.01
1368 1403 1.350706 GAGAACTGCAGAGCACGCTC 61.351 60.000 23.35 11.14 43.03 5.03
1369 1404 1.373999 GAGAACTGCAGAGCACGCT 60.374 57.895 23.35 7.54 33.79 5.07
1370 1405 2.724708 CGAGAACTGCAGAGCACGC 61.725 63.158 23.35 8.99 33.79 5.34
1372 1407 2.386660 GCCGAGAACTGCAGAGCAC 61.387 63.158 23.35 9.17 33.79 4.40
1373 1408 2.047844 GCCGAGAACTGCAGAGCA 60.048 61.111 23.35 0.00 36.92 4.26
1466 1501 2.806818 GTCGAAACTTCTCACCCCTTTC 59.193 50.000 0.00 0.00 0.00 2.62
1529 1566 5.926542 TCGAGACAAATTGTAGAAGGTCAAG 59.073 40.000 0.00 0.00 0.00 3.02
1538 1575 5.800438 TCACGAGATTCGAGACAAATTGTAG 59.200 40.000 0.00 0.00 43.74 2.74
1546 1583 1.454201 AGCTCACGAGATTCGAGACA 58.546 50.000 5.38 0.00 43.74 3.41
1583 1620 2.939103 CAGCTCCAAATTTAGAGGGTCG 59.061 50.000 14.31 0.00 0.00 4.79
1585 1622 2.649816 ACCAGCTCCAAATTTAGAGGGT 59.350 45.455 14.31 11.02 0.00 4.34
1587 1624 3.690460 ACACCAGCTCCAAATTTAGAGG 58.310 45.455 14.31 6.95 0.00 3.69
1589 1626 3.255642 GCAACACCAGCTCCAAATTTAGA 59.744 43.478 0.00 0.00 0.00 2.10
1592 1629 1.761784 TGCAACACCAGCTCCAAATTT 59.238 42.857 0.00 0.00 0.00 1.82
1641 1678 6.796426 AGTAAAACAGAAGCCTGAACTTTTC 58.204 36.000 0.00 0.00 43.02 2.29
1666 1703 6.867662 AAGAATGTAACTTCAGTTCAGTGG 57.132 37.500 0.00 0.00 39.31 4.00
1758 1800 1.069090 GGCGAGCCAACCGATGATA 59.931 57.895 9.58 0.00 35.81 2.15
1805 1847 0.798009 GAAAACATGTGGGCGCATCG 60.798 55.000 10.83 0.89 0.00 3.84
1811 1853 0.681175 AGCTTGGAAAACATGTGGGC 59.319 50.000 0.00 0.00 0.00 5.36
1833 1875 4.797275 GCATGAAGGAAAAGGTTGTGGAAG 60.797 45.833 0.00 0.00 0.00 3.46
1936 1987 4.084171 CGAAGATGCTCTATACGAACCGTA 60.084 45.833 1.58 1.58 46.28 4.02
1964 2015 4.599041 TGTCCTAGGCACAAAATAAGCAT 58.401 39.130 2.96 0.00 0.00 3.79
2161 2242 2.224606 CCTGGTATGATGGCATCACAC 58.775 52.381 30.96 28.68 43.01 3.82
2237 2318 2.340809 CGGCGTACCTGGTTCACA 59.659 61.111 3.84 0.00 0.00 3.58
2304 2385 6.668323 ACAACTACATAATGAACAACTGCAC 58.332 36.000 0.00 0.00 0.00 4.57
2325 2406 5.964477 AGAAGATACCAAGGGTGATAGACAA 59.036 40.000 0.00 0.00 36.19 3.18
2390 3475 4.138487 AGTTGCATTACCTAGTACTGCC 57.862 45.455 5.39 1.53 41.74 4.85
2414 3499 9.899661 AAACTGCAGTAATATGATAGGTGTTTA 57.100 29.630 22.01 0.00 0.00 2.01
2415 3500 8.677300 CAAACTGCAGTAATATGATAGGTGTTT 58.323 33.333 22.01 1.28 0.00 2.83
2417 3502 6.767902 CCAAACTGCAGTAATATGATAGGTGT 59.232 38.462 22.01 0.00 0.00 4.16
2419 3504 6.900194 ACCAAACTGCAGTAATATGATAGGT 58.100 36.000 22.01 13.69 0.00 3.08
2420 3505 9.507329 AATACCAAACTGCAGTAATATGATAGG 57.493 33.333 22.01 13.09 0.00 2.57
2501 5321 2.871096 AGCCGGGTGTCAGAAATTAA 57.129 45.000 4.72 0.00 0.00 1.40
2503 5323 1.073923 AGAAGCCGGGTGTCAGAAATT 59.926 47.619 7.07 0.00 0.00 1.82
2519 5340 5.007823 GGATGACAGAGATTTGCATCAGAAG 59.992 44.000 0.00 0.00 35.34 2.85
2522 5343 4.196971 TGGATGACAGAGATTTGCATCAG 58.803 43.478 0.00 0.00 35.34 2.90
2550 5372 1.626825 TGTACAAGGCAAGGTCCCTAC 59.373 52.381 0.00 0.00 30.93 3.18
2551 5373 2.032965 TGTACAAGGCAAGGTCCCTA 57.967 50.000 0.00 0.00 30.93 3.53
2555 5377 3.568007 TCAACAATGTACAAGGCAAGGTC 59.432 43.478 0.00 0.00 0.00 3.85
2772 5610 6.260936 CCTTTATATCATTCACTTCCGCTGTT 59.739 38.462 0.00 0.00 0.00 3.16
2801 5639 4.967036 AGAGAGAAAAAGAGTCCAAGTGG 58.033 43.478 0.00 0.00 0.00 4.00
2889 5729 6.857956 AGAAGAGTGACACACATATAGACAC 58.142 40.000 8.59 0.00 36.74 3.67
2957 5797 1.277273 TGCTACAGCTCTCTGCACAAT 59.723 47.619 2.44 0.00 44.10 2.71
3151 5994 8.276252 TCCCACATAAATTTTGAAGTACTAGC 57.724 34.615 0.00 0.00 0.00 3.42
3390 6274 6.126409 TGTTGGGTATAAATCTGTTGGGATC 58.874 40.000 0.00 0.00 0.00 3.36
3466 6350 7.290061 ACCATGCCATGAGTTAGTTATTGTAT 58.710 34.615 6.18 0.00 0.00 2.29
3467 6351 6.658849 ACCATGCCATGAGTTAGTTATTGTA 58.341 36.000 6.18 0.00 0.00 2.41
3472 6356 6.491745 TGAAAAACCATGCCATGAGTTAGTTA 59.508 34.615 6.18 0.00 0.00 2.24
3473 6357 5.304101 TGAAAAACCATGCCATGAGTTAGTT 59.696 36.000 6.18 6.86 0.00 2.24
3475 6359 5.389859 TGAAAAACCATGCCATGAGTTAG 57.610 39.130 6.18 0.00 0.00 2.34
3476 6360 5.999205 ATGAAAAACCATGCCATGAGTTA 57.001 34.783 6.18 0.00 0.00 2.24
3477 6361 4.895668 ATGAAAAACCATGCCATGAGTT 57.104 36.364 6.18 6.02 0.00 3.01
3478 6362 4.529377 AGAATGAAAAACCATGCCATGAGT 59.471 37.500 6.18 0.00 0.00 3.41
3479 6363 4.868171 CAGAATGAAAAACCATGCCATGAG 59.132 41.667 6.18 0.00 39.69 2.90
3767 6684 3.192844 AGACGAGATCGAACCTTGCTAAA 59.807 43.478 9.58 0.00 43.02 1.85
4112 7109 4.787551 ACCCAGTGATAAACAGTGTTTGA 58.212 39.130 27.65 13.99 45.47 2.69
4215 7215 2.581216 AGGTGTAGTCCGAGTGAGAA 57.419 50.000 0.00 0.00 0.00 2.87
4232 7232 2.094675 CCAAGGACACCATGCTTAAGG 58.905 52.381 4.29 0.00 36.73 2.69
4290 7290 2.601628 TTCGACACACACGTCACGCT 62.602 55.000 0.00 0.00 35.54 5.07
4435 7439 4.471025 TGGTTATCTGAATGCTCTTGAGGA 59.529 41.667 0.00 0.00 0.00 3.71
4477 7481 7.637229 AGATGCTTGATCTGAATTGTTATTCG 58.363 34.615 0.00 0.00 42.55 3.34
4493 7498 3.565482 GGTTGTGAAGTTCAGATGCTTGA 59.435 43.478 5.62 0.00 0.00 3.02
4506 7511 2.537529 CGCTTATGCATCGGTTGTGAAG 60.538 50.000 0.19 0.00 39.64 3.02
4523 7528 5.734720 TGAGGACTTCAGAATATTTCGCTT 58.265 37.500 0.00 0.00 34.02 4.68
4540 7545 4.389374 TCATTCAAAGTTGGACTGAGGAC 58.611 43.478 0.00 0.00 0.00 3.85
4543 7548 5.756195 TGTTCATTCAAAGTTGGACTGAG 57.244 39.130 1.05 0.00 0.00 3.35
4581 7588 0.392193 CGAAGCTCTTGATGCCCACT 60.392 55.000 0.00 0.00 0.00 4.00
4644 7651 1.225376 GGTTCGCCGTCATTGTCACA 61.225 55.000 0.00 0.00 0.00 3.58
4746 8025 5.769662 AGTGCATCAAGTTTTATGGTTCAGA 59.230 36.000 0.00 0.00 0.00 3.27
4747 8026 6.017400 AGTGCATCAAGTTTTATGGTTCAG 57.983 37.500 0.00 0.00 0.00 3.02
4748 8027 6.403866 AAGTGCATCAAGTTTTATGGTTCA 57.596 33.333 0.00 0.00 0.00 3.18
4749 8028 7.865385 TGTAAAGTGCATCAAGTTTTATGGTTC 59.135 33.333 0.00 0.00 0.00 3.62
4756 8035 5.846203 AGCATGTAAAGTGCATCAAGTTTT 58.154 33.333 0.00 0.00 44.87 2.43
4769 8049 7.260558 ACAGATGATGAATGAGCATGTAAAG 57.739 36.000 0.00 0.00 28.07 1.85
4947 8233 0.459411 CACACCATATGCGACGACCA 60.459 55.000 0.00 0.00 0.00 4.02
4948 8234 0.459585 ACACACCATATGCGACGACC 60.460 55.000 0.00 0.00 0.00 4.79
4949 8235 2.117137 CTACACACCATATGCGACGAC 58.883 52.381 0.00 0.00 0.00 4.34
4990 8277 0.036164 TTGCCAGCCTGACATACGTT 59.964 50.000 0.00 0.00 0.00 3.99
4991 8278 0.391661 CTTGCCAGCCTGACATACGT 60.392 55.000 0.00 0.00 0.00 3.57
5004 8291 1.537776 CGTGCAAACCAATTCTTGCCA 60.538 47.619 11.83 1.49 45.92 4.92
5046 17206 1.499502 GCTGCAAGGTTCGAAGAGC 59.500 57.895 0.00 0.83 38.43 4.09
5047 17207 0.603707 TGGCTGCAAGGTTCGAAGAG 60.604 55.000 0.00 0.00 38.43 2.85
5048 17208 0.603707 CTGGCTGCAAGGTTCGAAGA 60.604 55.000 0.00 0.00 0.00 2.87
5049 17209 0.886490 ACTGGCTGCAAGGTTCGAAG 60.886 55.000 9.22 0.00 0.00 3.79
5154 17317 2.739913 TGTTCGTTCCCGCTGAAAATAG 59.260 45.455 0.00 0.00 33.94 1.73
5173 17336 2.115266 CGGCCTTTCTGGGGTTGT 59.885 61.111 0.00 0.00 36.00 3.32
5176 17339 3.175710 ACACGGCCTTTCTGGGGT 61.176 61.111 0.00 0.00 36.00 4.95
5194 17357 0.741221 GTACAGCCTCGGCAGGAAAG 60.741 60.000 11.02 0.00 43.65 2.62
5215 17383 1.305549 CCTCAAAGCCCAGCCCAAT 60.306 57.895 0.00 0.00 0.00 3.16
5216 17384 2.118076 CCTCAAAGCCCAGCCCAA 59.882 61.111 0.00 0.00 0.00 4.12
5256 17425 2.514803 AGCTTGATTAGTTTGGGCGTT 58.485 42.857 0.00 0.00 0.00 4.84
5257 17426 2.200373 AGCTTGATTAGTTTGGGCGT 57.800 45.000 0.00 0.00 0.00 5.68
5298 17469 9.208022 GCAGGTTTTCTATTTGATTAGCTTTTT 57.792 29.630 0.00 0.00 0.00 1.94
5299 17470 7.819415 GGCAGGTTTTCTATTTGATTAGCTTTT 59.181 33.333 0.00 0.00 0.00 2.27
5300 17471 7.323420 GGCAGGTTTTCTATTTGATTAGCTTT 58.677 34.615 0.00 0.00 0.00 3.51
5301 17472 6.404734 CGGCAGGTTTTCTATTTGATTAGCTT 60.405 38.462 0.00 0.00 0.00 3.74
5302 17473 5.066505 CGGCAGGTTTTCTATTTGATTAGCT 59.933 40.000 0.00 0.00 0.00 3.32
5303 17474 5.273944 CGGCAGGTTTTCTATTTGATTAGC 58.726 41.667 0.00 0.00 0.00 3.09
5304 17475 5.821204 CCGGCAGGTTTTCTATTTGATTAG 58.179 41.667 0.00 0.00 0.00 1.73
5305 17476 5.828299 CCGGCAGGTTTTCTATTTGATTA 57.172 39.130 0.00 0.00 0.00 1.75
5306 17477 4.718940 CCGGCAGGTTTTCTATTTGATT 57.281 40.909 0.00 0.00 0.00 2.57
5368 17539 1.679680 TGCTCTTATACCCGTCCGAAG 59.320 52.381 0.00 0.00 0.00 3.79
5400 17571 4.684703 CGAGAAAGGTATGAGTTGAAACGT 59.315 41.667 0.00 0.00 0.00 3.99
5560 17731 0.319083 CAACGCCTAGGGTACACACA 59.681 55.000 11.72 0.00 0.00 3.72
5562 17733 1.294138 GCAACGCCTAGGGTACACA 59.706 57.895 11.72 0.00 0.00 3.72
5567 17738 1.189524 TGTAGTGCAACGCCTAGGGT 61.190 55.000 11.72 3.84 45.86 4.34
5572 17743 2.358737 GGCTGTAGTGCAACGCCT 60.359 61.111 13.61 0.00 45.86 5.52
5599 17770 1.500474 TTGATTTTGGTTGGGGTGCA 58.500 45.000 0.00 0.00 0.00 4.57
5693 17866 0.107508 TGACTGAGCTAGGCCATTGC 60.108 55.000 5.01 5.96 31.29 3.56
5727 17900 4.880696 GCTATTTGATCAGGTTCAGCTCTT 59.119 41.667 0.00 0.00 0.00 2.85
5728 17901 4.163839 AGCTATTTGATCAGGTTCAGCTCT 59.836 41.667 11.38 0.00 0.00 4.09
5729 17902 4.450053 AGCTATTTGATCAGGTTCAGCTC 58.550 43.478 11.38 0.00 0.00 4.09
5755 17929 4.368315 CAGTGAACATAGGCGCAGTATTA 58.632 43.478 10.83 0.00 0.00 0.98
5757 17931 2.826428 CAGTGAACATAGGCGCAGTAT 58.174 47.619 10.83 2.17 0.00 2.12
5758 17932 1.739035 GCAGTGAACATAGGCGCAGTA 60.739 52.381 10.83 0.00 0.00 2.74
5761 17935 2.100031 CGCAGTGAACATAGGCGCA 61.100 57.895 10.83 0.00 41.27 6.09
5762 17936 2.703409 CGCAGTGAACATAGGCGC 59.297 61.111 0.00 0.00 41.27 6.53
5764 17938 2.888594 TCTTACGCAGTGAACATAGGC 58.111 47.619 0.00 0.00 45.73 3.93
5765 17939 4.929808 AGTTTCTTACGCAGTGAACATAGG 59.070 41.667 0.00 0.00 45.73 2.57
5766 17940 5.864474 AGAGTTTCTTACGCAGTGAACATAG 59.136 40.000 0.00 0.00 45.73 2.23
5767 17941 5.779922 AGAGTTTCTTACGCAGTGAACATA 58.220 37.500 0.00 0.00 45.73 2.29
5768 17942 4.632153 AGAGTTTCTTACGCAGTGAACAT 58.368 39.130 0.00 0.00 45.73 2.71
5769 17943 4.054780 AGAGTTTCTTACGCAGTGAACA 57.945 40.909 0.00 0.00 45.73 3.18
5808 18044 6.932356 ATGCACCAGACTTCATAATACTTG 57.068 37.500 0.00 0.00 0.00 3.16
5810 18046 7.212976 CAGTATGCACCAGACTTCATAATACT 58.787 38.462 0.00 0.00 33.39 2.12
5811 18047 6.425114 CCAGTATGCACCAGACTTCATAATAC 59.575 42.308 0.00 0.00 33.39 1.89
5813 18049 5.371526 CCAGTATGCACCAGACTTCATAAT 58.628 41.667 0.00 0.00 33.39 1.28
5814 18050 4.769688 CCAGTATGCACCAGACTTCATAA 58.230 43.478 0.00 0.00 33.39 1.90
5816 18052 2.681976 GCCAGTATGCACCAGACTTCAT 60.682 50.000 0.00 0.00 33.39 2.57
5817 18053 1.339055 GCCAGTATGCACCAGACTTCA 60.339 52.381 0.00 0.00 33.39 3.02
5818 18054 1.065854 AGCCAGTATGCACCAGACTTC 60.066 52.381 0.00 0.00 33.39 3.01
5819 18055 0.987294 AGCCAGTATGCACCAGACTT 59.013 50.000 0.00 0.00 33.39 3.01
5820 18056 0.539051 GAGCCAGTATGCACCAGACT 59.461 55.000 0.00 0.00 36.27 3.24
5821 18057 0.462759 GGAGCCAGTATGCACCAGAC 60.463 60.000 0.00 0.00 41.12 3.51
5822 18058 1.907739 GGAGCCAGTATGCACCAGA 59.092 57.895 0.00 0.00 41.12 3.86
5823 18059 1.522355 CGGAGCCAGTATGCACCAG 60.522 63.158 0.00 0.00 41.48 4.00
5824 18060 1.836999 AACGGAGCCAGTATGCACCA 61.837 55.000 0.00 0.00 41.48 4.17
5826 18062 2.018542 TAAACGGAGCCAGTATGCAC 57.981 50.000 0.00 0.00 31.97 4.57
5827 18063 2.772077 TTAAACGGAGCCAGTATGCA 57.228 45.000 0.00 0.00 31.97 3.96
5828 18064 3.007635 ACTTTAAACGGAGCCAGTATGC 58.992 45.455 0.00 0.00 31.97 3.14
5829 18065 5.048991 ACAAACTTTAAACGGAGCCAGTATG 60.049 40.000 0.00 0.00 0.00 2.39
5830 18066 5.048991 CACAAACTTTAAACGGAGCCAGTAT 60.049 40.000 0.00 0.00 0.00 2.12
5831 18067 4.273969 CACAAACTTTAAACGGAGCCAGTA 59.726 41.667 0.00 0.00 0.00 2.74
5832 18068 3.066203 CACAAACTTTAAACGGAGCCAGT 59.934 43.478 0.00 0.00 0.00 4.00
5833 18069 3.314080 TCACAAACTTTAAACGGAGCCAG 59.686 43.478 0.00 0.00 0.00 4.85
5834 18070 3.280295 TCACAAACTTTAAACGGAGCCA 58.720 40.909 0.00 0.00 0.00 4.75
5896 18133 5.302360 ACGAAGCTTGTACCAACTCATTTA 58.698 37.500 2.10 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.