Multiple sequence alignment - TraesCS1A01G405000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G405000 chr1A 100.000 2267 0 0 1 2267 568327023 568329289 0.000000e+00 4187.0
1 TraesCS1A01G405000 chr1A 86.949 613 60 16 834 1438 568265898 568266498 0.000000e+00 671.0
2 TraesCS1A01G405000 chr1A 83.543 717 62 22 740 1440 568376903 568377579 8.900000e-174 619.0
3 TraesCS1A01G405000 chr1A 86.736 573 49 16 740 1306 568383248 568383799 1.490000e-171 612.0
4 TraesCS1A01G405000 chr1A 89.151 424 26 13 1575 1982 568383883 568384302 5.590000e-141 510.0
5 TraesCS1A01G405000 chr1A 81.924 603 63 30 1 581 568265163 568265741 3.410000e-128 468.0
6 TraesCS1A01G405000 chr1A 98.718 234 2 1 1985 2218 568333847 568334079 4.510000e-112 414.0
7 TraesCS1A01G405000 chr1A 93.182 220 15 0 587 806 568265680 568265899 7.810000e-85 324.0
8 TraesCS1A01G405000 chr1A 79.118 431 49 25 1575 1993 568377601 568378002 2.230000e-65 259.0
9 TraesCS1A01G405000 chr1A 94.964 139 6 1 1441 1579 164047725 164047862 1.360000e-52 217.0
10 TraesCS1A01G405000 chr1A 82.143 252 30 8 1755 1993 568399333 568399582 3.820000e-48 202.0
11 TraesCS1A01G405000 chr1A 93.333 120 4 1 1575 1690 568266522 568266641 8.320000e-40 174.0
12 TraesCS1A01G405000 chr1B 88.023 860 72 23 587 1438 659033412 659034248 0.000000e+00 989.0
13 TraesCS1A01G405000 chr1B 87.783 794 66 20 593 1377 658968784 658969555 0.000000e+00 900.0
14 TraesCS1A01G405000 chr1B 87.789 778 69 23 673 1438 659294395 659295158 0.000000e+00 887.0
15 TraesCS1A01G405000 chr1B 89.482 599 42 12 1 581 659285156 659285751 0.000000e+00 737.0
16 TraesCS1A01G405000 chr1B 89.280 597 45 10 1 581 659181615 659182208 0.000000e+00 730.0
17 TraesCS1A01G405000 chr1B 88.254 613 51 18 833 1438 659285893 659286491 0.000000e+00 713.0
18 TraesCS1A01G405000 chr1B 89.568 556 41 13 833 1383 659182350 659182893 0.000000e+00 689.0
19 TraesCS1A01G405000 chr1B 88.448 580 39 13 1 562 659293826 659294395 0.000000e+00 675.0
20 TraesCS1A01G405000 chr1B 92.952 454 22 4 839 1282 659002557 659003010 0.000000e+00 652.0
21 TraesCS1A01G405000 chr1B 82.986 623 37 27 9 581 659072687 659073290 1.210000e-137 499.0
22 TraesCS1A01G405000 chr1B 89.548 354 20 6 588 937 659073230 659073570 1.240000e-117 433.0
23 TraesCS1A01G405000 chr1B 84.749 459 33 14 148 581 658968395 658968841 2.080000e-115 425.0
24 TraesCS1A01G405000 chr1B 93.367 196 13 0 597 792 659285700 659285895 7.920000e-75 291.0
25 TraesCS1A01G405000 chr1B 92.857 196 14 0 597 792 659182157 659182352 3.690000e-73 285.0
26 TraesCS1A01G405000 chr1B 82.143 252 30 4 1755 1993 659327052 659327301 3.820000e-48 202.0
27 TraesCS1A01G405000 chr1B 85.065 154 19 3 1786 1937 659289297 659289448 1.080000e-33 154.0
28 TraesCS1A01G405000 chr1B 80.660 212 23 8 1786 1982 659167883 659168091 5.050000e-32 148.0
29 TraesCS1A01G405000 chr1B 80.569 211 25 7 1786 1982 659184624 659184832 5.050000e-32 148.0
30 TraesCS1A01G405000 chr1B 83.766 154 21 3 1786 1937 658972964 658973115 2.350000e-30 143.0
31 TraesCS1A01G405000 chr1B 83.766 154 21 3 1786 1937 659006551 659006702 2.350000e-30 143.0
32 TraesCS1A01G405000 chr1B 80.095 211 26 6 1786 1982 659271835 659272043 2.350000e-30 143.0
33 TraesCS1A01G405000 chr1B 95.238 63 3 0 1931 1993 659295456 659295518 1.430000e-17 100.0
34 TraesCS1A01G405000 chr1B 95.082 61 3 0 1933 1993 658969894 658969954 1.850000e-16 97.1
35 TraesCS1A01G405000 chr1B 95.082 61 3 0 1933 1993 659003477 659003537 1.850000e-16 97.1
36 TraesCS1A01G405000 chr1B 95.082 61 3 0 1933 1993 659286787 659286847 1.850000e-16 97.1
37 TraesCS1A01G405000 chr1B 93.443 61 4 0 1933 1993 659034557 659034617 8.620000e-15 91.6
38 TraesCS1A01G405000 chr1B 91.803 61 4 1 1933 1993 659074334 659074393 1.440000e-12 84.2
39 TraesCS1A01G405000 chr1D 89.422 709 38 14 587 1282 473960832 473961516 0.000000e+00 859.0
40 TraesCS1A01G405000 chr1D 85.664 572 58 13 740 1306 473965816 473966368 4.200000e-162 580.0
41 TraesCS1A01G405000 chr1D 82.817 646 60 31 744 1383 473879601 473880201 4.290000e-147 531.0
42 TraesCS1A01G405000 chr1D 88.525 427 28 13 1575 1982 473966450 473966874 4.350000e-137 497.0
43 TraesCS1A01G405000 chr1D 79.575 612 74 24 1 581 473960302 473960893 7.590000e-105 390.0
44 TraesCS1A01G405000 chr1D 91.613 155 9 4 1441 1594 436042448 436042297 6.340000e-51 211.0
45 TraesCS1A01G405000 chr1D 89.091 165 14 1 1575 1735 473961673 473961837 3.820000e-48 202.0
46 TraesCS1A01G405000 chr1D 89.441 161 14 2 1575 1735 473880302 473880459 1.370000e-47 200.0
47 TraesCS1A01G405000 chr1D 89.610 154 14 2 1575 1727 473987773 473987925 6.390000e-46 195.0
48 TraesCS1A01G405000 chr1D 80.870 115 8 5 1881 1982 473987959 473988072 6.710000e-11 78.7
49 TraesCS1A01G405000 chr7B 87.250 400 33 12 1598 1982 152913901 152913505 7.430000e-120 440.0
50 TraesCS1A01G405000 chr7B 92.899 169 12 0 1575 1743 65395723 65395891 1.740000e-61 246.0
51 TraesCS1A01G405000 chr2D 98.734 237 2 1 1993 2228 30652789 30653025 9.680000e-114 420.0
52 TraesCS1A01G405000 chr2D 95.000 140 6 1 1439 1578 112095470 112095332 3.790000e-53 219.0
53 TraesCS1A01G405000 chr2D 90.000 160 12 4 1441 1600 87664409 87664254 1.060000e-48 204.0
54 TraesCS1A01G405000 chr3D 90.667 225 21 0 1992 2216 528794431 528794655 1.320000e-77 300.0
55 TraesCS1A01G405000 chr5A 95.683 139 3 3 1441 1578 560609433 560609569 1.050000e-53 220.0
56 TraesCS1A01G405000 chr2B 93.333 150 8 2 1441 1589 595121437 595121585 1.050000e-53 220.0
57 TraesCS1A01G405000 chr7A 95.000 140 6 1 1439 1578 579172072 579171934 3.790000e-53 219.0
58 TraesCS1A01G405000 chr7A 92.517 147 10 1 1441 1587 167905676 167905821 2.280000e-50 209.0
59 TraesCS1A01G405000 chr7D 90.446 157 11 4 1439 1593 461953561 461953715 1.060000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G405000 chr1A 568327023 568329289 2266 False 4187.000000 4187 100.000000 1 2267 1 chr1A.!!$F2 2266
1 TraesCS1A01G405000 chr1A 568383248 568384302 1054 False 561.000000 612 87.943500 740 1982 2 chr1A.!!$F7 1242
2 TraesCS1A01G405000 chr1A 568376903 568378002 1099 False 439.000000 619 81.330500 740 1993 2 chr1A.!!$F6 1253
3 TraesCS1A01G405000 chr1A 568265163 568266641 1478 False 409.250000 671 88.847000 1 1690 4 chr1A.!!$F5 1689
4 TraesCS1A01G405000 chr1B 659293826 659295518 1692 False 554.000000 887 90.491667 1 1993 3 chr1B.!!$F10 1992
5 TraesCS1A01G405000 chr1B 659033412 659034617 1205 False 540.300000 989 90.733000 587 1993 2 chr1B.!!$F6 1406
6 TraesCS1A01G405000 chr1B 659181615 659184832 3217 False 463.000000 730 88.068500 1 1982 4 chr1B.!!$F8 1981
7 TraesCS1A01G405000 chr1B 659285156 659289448 4292 False 398.420000 737 90.250000 1 1993 5 chr1B.!!$F9 1992
8 TraesCS1A01G405000 chr1B 658968395 658973115 4720 False 391.275000 900 87.845000 148 1993 4 chr1B.!!$F4 1845
9 TraesCS1A01G405000 chr1B 659072687 659074393 1706 False 338.733333 499 88.112333 9 1993 3 chr1B.!!$F7 1984
10 TraesCS1A01G405000 chr1B 659002557 659006702 4145 False 297.366667 652 90.600000 839 1993 3 chr1B.!!$F5 1154
11 TraesCS1A01G405000 chr1D 473960302 473966874 6572 False 505.600000 859 86.455400 1 1982 5 chr1D.!!$F2 1981
12 TraesCS1A01G405000 chr1D 473879601 473880459 858 False 365.500000 531 86.129000 744 1735 2 chr1D.!!$F1 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 50 0.391793 GAGTGGTAACTGCTGCCCTC 60.392 60.0 0.0 0.0 36.52 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 3102 0.035439 AGGTTAGGCGAATGGGTGTG 60.035 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 50 0.391793 GAGTGGTAACTGCTGCCCTC 60.392 60.000 0.00 0.00 36.52 4.30
43 52 2.820037 GGTAACTGCTGCCCTCGC 60.820 66.667 0.00 0.00 0.00 5.03
50 59 4.838152 GCTGCCCTCGCGAATGGA 62.838 66.667 24.25 12.58 38.08 3.41
206 249 7.040409 ACCTGACAGAATATGTTTTGGAGTTTC 60.040 37.037 3.32 0.00 44.17 2.78
217 261 7.518731 TGTTTTGGAGTTTCAAAAATTCTCG 57.481 32.000 0.05 0.00 44.81 4.04
262 314 8.417106 TGAAGAGATGGTTTCTATAGACATGTC 58.583 37.037 18.47 18.47 33.74 3.06
314 366 4.142093 ACAGATTCATTTACAAGGCATGGC 60.142 41.667 12.14 12.14 0.00 4.40
315 367 2.937469 TTCATTTACAAGGCATGGCG 57.063 45.000 14.30 2.89 0.00 5.69
333 397 6.020678 GCATGGCGAAAACAAATACAGTAATC 60.021 38.462 0.00 0.00 0.00 1.75
531 638 4.673441 AGATACGACGGATTCAAGAGTTG 58.327 43.478 0.00 0.00 0.00 3.16
554 661 9.612620 GTTGTGAGTTAATTCAGATTAAGTTGG 57.387 33.333 0.16 0.00 40.03 3.77
560 667 9.787435 AGTTAATTCAGATTAAGTTGGTGTGTA 57.213 29.630 0.00 0.00 37.88 2.90
564 671 9.959721 AATTCAGATTAAGTTGGTGTGTATAGT 57.040 29.630 0.00 0.00 0.00 2.12
565 672 8.771920 TTCAGATTAAGTTGGTGTGTATAGTG 57.228 34.615 0.00 0.00 0.00 2.74
566 673 7.903145 TCAGATTAAGTTGGTGTGTATAGTGT 58.097 34.615 0.00 0.00 0.00 3.55
567 674 8.372459 TCAGATTAAGTTGGTGTGTATAGTGTT 58.628 33.333 0.00 0.00 0.00 3.32
568 675 8.443160 CAGATTAAGTTGGTGTGTATAGTGTTG 58.557 37.037 0.00 0.00 0.00 3.33
569 676 7.606456 AGATTAAGTTGGTGTGTATAGTGTTGG 59.394 37.037 0.00 0.00 0.00 3.77
570 677 4.015872 AGTTGGTGTGTATAGTGTTGGG 57.984 45.455 0.00 0.00 0.00 4.12
571 678 3.393278 AGTTGGTGTGTATAGTGTTGGGT 59.607 43.478 0.00 0.00 0.00 4.51
572 679 4.594062 AGTTGGTGTGTATAGTGTTGGGTA 59.406 41.667 0.00 0.00 0.00 3.69
573 680 4.540359 TGGTGTGTATAGTGTTGGGTAC 57.460 45.455 0.00 0.00 0.00 3.34
574 681 3.902467 TGGTGTGTATAGTGTTGGGTACA 59.098 43.478 0.00 0.00 0.00 2.90
575 682 4.347292 TGGTGTGTATAGTGTTGGGTACAA 59.653 41.667 0.00 0.00 38.80 2.41
585 692 2.754946 TTGGGTACAACTCGATGTCC 57.245 50.000 0.00 0.00 34.75 4.02
662 771 0.930742 GTCGAGATGACGTCGGCATC 60.931 60.000 29.94 29.94 41.70 3.91
713 822 3.443681 GGCTTAATTGCTCAAACAGGCTA 59.556 43.478 0.00 0.00 0.00 3.93
757 867 6.712998 TCTGATACTGATACCTAGCTCAGAAC 59.287 42.308 17.21 10.47 41.13 3.01
840 975 4.400961 GGCACGCTCCCAGCTTCT 62.401 66.667 0.00 0.00 39.60 2.85
921 1056 3.434984 GCTTCTACAAGAGCAAAGGACTG 59.565 47.826 0.00 0.00 0.00 3.51
996 1140 5.587289 GAGTAGAACATCACATCTCACCTC 58.413 45.833 0.00 0.00 0.00 3.85
1047 1192 1.677966 CTCCCCGAACTCCGACTCA 60.678 63.158 0.00 0.00 41.76 3.41
1216 1362 1.406219 CGACGTCAACAGCATCGAGG 61.406 60.000 17.16 0.00 34.77 4.63
1265 1411 1.001641 CCCAAGGCTTCTGGACCTG 60.002 63.158 6.80 0.00 36.07 4.00
1292 1443 7.272037 AGGTATAACTCAACCAAAAACTGTG 57.728 36.000 0.00 0.00 38.30 3.66
1309 1460 1.832998 TGTGCAGACATAGGATGCTCA 59.167 47.619 9.88 9.42 40.10 4.26
1310 1461 2.236893 TGTGCAGACATAGGATGCTCAA 59.763 45.455 10.13 0.00 39.62 3.02
1312 1463 3.064545 GTGCAGACATAGGATGCTCAAAC 59.935 47.826 9.88 0.00 40.62 2.93
1314 1465 3.311871 GCAGACATAGGATGCTCAAACTG 59.688 47.826 0.00 0.00 37.00 3.16
1315 1466 3.311871 CAGACATAGGATGCTCAAACTGC 59.688 47.826 0.00 0.00 0.00 4.40
1316 1467 3.199508 AGACATAGGATGCTCAAACTGCT 59.800 43.478 0.00 0.00 0.00 4.24
1389 1554 4.021981 GCTTGCTGGGAAAAGTAGATGTTT 60.022 41.667 0.00 0.00 0.00 2.83
1390 1555 5.452078 TTGCTGGGAAAAGTAGATGTTTG 57.548 39.130 0.00 0.00 0.00 2.93
1392 1557 4.518970 TGCTGGGAAAAGTAGATGTTTGAC 59.481 41.667 0.00 0.00 0.00 3.18
1393 1558 4.762251 GCTGGGAAAAGTAGATGTTTGACT 59.238 41.667 0.00 0.00 0.00 3.41
1394 1559 5.241728 GCTGGGAAAAGTAGATGTTTGACTT 59.758 40.000 0.00 0.00 34.92 3.01
1395 1560 6.239036 GCTGGGAAAAGTAGATGTTTGACTTT 60.239 38.462 0.00 0.00 43.49 2.66
1396 1561 7.038154 TGGGAAAAGTAGATGTTTGACTTTG 57.962 36.000 0.36 0.00 41.39 2.77
1398 1563 7.340743 TGGGAAAAGTAGATGTTTGACTTTGAA 59.659 33.333 0.36 0.00 41.39 2.69
1399 1564 7.648112 GGGAAAAGTAGATGTTTGACTTTGAAC 59.352 37.037 0.36 0.00 41.39 3.18
1400 1565 8.406297 GGAAAAGTAGATGTTTGACTTTGAACT 58.594 33.333 0.36 0.00 41.39 3.01
1443 1645 4.874970 GCAGGGGCATTTATGTATTCTTG 58.125 43.478 0.00 0.00 40.72 3.02
1444 1646 4.584325 GCAGGGGCATTTATGTATTCTTGA 59.416 41.667 0.00 0.00 40.72 3.02
1445 1647 5.068987 GCAGGGGCATTTATGTATTCTTGAA 59.931 40.000 0.00 0.00 40.72 2.69
1446 1648 6.406849 GCAGGGGCATTTATGTATTCTTGAAA 60.407 38.462 0.00 0.00 40.72 2.69
1447 1649 7.205297 CAGGGGCATTTATGTATTCTTGAAAG 58.795 38.462 0.00 0.00 0.00 2.62
1448 1650 6.897413 AGGGGCATTTATGTATTCTTGAAAGT 59.103 34.615 0.00 0.00 0.00 2.66
1449 1651 7.068716 AGGGGCATTTATGTATTCTTGAAAGTC 59.931 37.037 0.00 0.00 0.00 3.01
1450 1652 7.068716 GGGGCATTTATGTATTCTTGAAAGTCT 59.931 37.037 0.00 0.00 0.00 3.24
1451 1653 8.470002 GGGCATTTATGTATTCTTGAAAGTCTT 58.530 33.333 0.00 0.00 0.00 3.01
1452 1654 9.508567 GGCATTTATGTATTCTTGAAAGTCTTC 57.491 33.333 0.00 0.00 0.00 2.87
1464 1666 8.608844 TCTTGAAAGTCTTCTTCATTTAGTCC 57.391 34.615 0.00 0.00 32.90 3.85
1465 1667 7.661847 TCTTGAAAGTCTTCTTCATTTAGTCCC 59.338 37.037 0.00 0.00 32.90 4.46
1466 1668 6.837312 TGAAAGTCTTCTTCATTTAGTCCCA 58.163 36.000 0.00 0.00 32.90 4.37
1467 1669 7.287061 TGAAAGTCTTCTTCATTTAGTCCCAA 58.713 34.615 0.00 0.00 32.90 4.12
1468 1670 7.777910 TGAAAGTCTTCTTCATTTAGTCCCAAA 59.222 33.333 0.00 0.00 32.90 3.28
1469 1671 8.712228 AAAGTCTTCTTCATTTAGTCCCAAAT 57.288 30.769 0.00 0.00 32.90 2.32
1470 1672 7.693969 AGTCTTCTTCATTTAGTCCCAAATG 57.306 36.000 2.83 2.83 44.00 2.32
1480 1682 9.667107 TCATTTAGTCCCAAATGACTAGTTTAG 57.333 33.333 0.00 0.00 45.46 1.85
1481 1683 9.449719 CATTTAGTCCCAAATGACTAGTTTAGT 57.550 33.333 0.00 0.00 45.77 2.24
1495 1697 7.013823 ACTAGTTTAGTCCCTAAAAAGTCCC 57.986 40.000 0.00 0.00 37.62 4.46
1496 1698 6.791466 ACTAGTTTAGTCCCTAAAAAGTCCCT 59.209 38.462 0.00 0.00 37.62 4.20
1497 1699 7.958016 ACTAGTTTAGTCCCTAAAAAGTCCCTA 59.042 37.037 0.00 0.00 37.62 3.53
1498 1700 7.825983 AGTTTAGTCCCTAAAAAGTCCCTAT 57.174 36.000 0.00 0.00 37.62 2.57
1499 1701 8.228353 AGTTTAGTCCCTAAAAAGTCCCTATT 57.772 34.615 0.00 0.00 37.62 1.73
1500 1702 9.342736 AGTTTAGTCCCTAAAAAGTCCCTATTA 57.657 33.333 0.00 0.00 37.62 0.98
1505 1707 8.059461 AGTCCCTAAAAAGTCCCTATTATTTGG 58.941 37.037 0.00 0.00 0.00 3.28
1506 1708 7.837689 GTCCCTAAAAAGTCCCTATTATTTGGT 59.162 37.037 0.00 0.00 0.00 3.67
1507 1709 9.071334 TCCCTAAAAAGTCCCTATTATTTGGTA 57.929 33.333 0.00 0.00 0.00 3.25
1508 1710 9.703677 CCCTAAAAAGTCCCTATTATTTGGTAA 57.296 33.333 0.00 0.00 0.00 2.85
1537 1743 8.265108 AGTCTTTAAGAGGGACTTTTTCTAGT 57.735 34.615 0.00 0.00 41.55 2.57
1538 1744 8.369424 AGTCTTTAAGAGGGACTTTTTCTAGTC 58.631 37.037 0.00 0.00 41.55 2.59
1549 1755 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
1550 1756 8.217131 GACTTTTTCTAGTCCCTACACAAAAA 57.783 34.615 0.00 0.00 38.88 1.94
1570 1776 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
1571 1777 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
1572 1778 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
1573 1779 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
1697 3007 4.521146 AGCACTATCAGACAATTTCCCTG 58.479 43.478 0.00 0.00 0.00 4.45
1698 3008 4.018960 AGCACTATCAGACAATTTCCCTGT 60.019 41.667 0.00 0.00 0.00 4.00
1701 3011 6.294731 GCACTATCAGACAATTTCCCTGTTTT 60.295 38.462 0.00 0.00 0.00 2.43
1706 3016 6.940739 TCAGACAATTTCCCTGTTTTCAAAA 58.059 32.000 0.00 0.00 0.00 2.44
1707 3017 7.563906 TCAGACAATTTCCCTGTTTTCAAAAT 58.436 30.769 0.00 0.00 0.00 1.82
1716 3026 9.892130 TTTCCCTGTTTTCAAAATAAAAGCTTA 57.108 25.926 0.00 0.00 0.00 3.09
1735 3045 5.365025 AGCTTAGATGGATCTTGCAGTCTTA 59.635 40.000 13.31 0.00 38.32 2.10
1737 3047 6.685116 GCTTAGATGGATCTTGCAGTCTTACT 60.685 42.308 0.00 0.00 38.32 2.24
1738 3048 7.470702 GCTTAGATGGATCTTGCAGTCTTACTA 60.471 40.741 0.00 0.00 38.32 1.82
1739 3049 6.403866 AGATGGATCTTGCAGTCTTACTAG 57.596 41.667 0.00 0.00 31.97 2.57
1740 3050 5.304101 AGATGGATCTTGCAGTCTTACTAGG 59.696 44.000 0.00 0.00 31.97 3.02
1741 3051 3.133003 TGGATCTTGCAGTCTTACTAGGC 59.867 47.826 0.00 0.00 0.00 3.93
1754 3064 8.521176 CAGTCTTACTAGGCTAGTTTTCTTGTA 58.479 37.037 30.46 8.86 40.14 2.41
1756 3066 8.738106 GTCTTACTAGGCTAGTTTTCTTGTAGA 58.262 37.037 30.46 16.43 40.14 2.59
1761 3071 8.376270 ACTAGGCTAGTTTTCTTGTAGATTTGT 58.624 33.333 21.30 0.00 34.86 2.83
1762 3072 7.440523 AGGCTAGTTTTCTTGTAGATTTGTG 57.559 36.000 0.00 0.00 0.00 3.33
1763 3073 6.431234 AGGCTAGTTTTCTTGTAGATTTGTGG 59.569 38.462 0.00 0.00 0.00 4.17
1764 3074 6.206829 GGCTAGTTTTCTTGTAGATTTGTGGT 59.793 38.462 0.00 0.00 0.00 4.16
1766 3076 8.947115 GCTAGTTTTCTTGTAGATTTGTGGTAT 58.053 33.333 0.00 0.00 0.00 2.73
1775 3085 9.289303 CTTGTAGATTTGTGGTATATTTTGTGC 57.711 33.333 0.00 0.00 0.00 4.57
1776 3086 8.341892 TGTAGATTTGTGGTATATTTTGTGCA 57.658 30.769 0.00 0.00 0.00 4.57
1777 3087 8.458052 TGTAGATTTGTGGTATATTTTGTGCAG 58.542 33.333 0.00 0.00 0.00 4.41
1778 3088 6.332630 AGATTTGTGGTATATTTTGTGCAGC 58.667 36.000 0.00 0.00 0.00 5.25
1779 3089 5.720371 TTTGTGGTATATTTTGTGCAGCT 57.280 34.783 0.00 0.00 0.00 4.24
1780 3090 6.825944 TTTGTGGTATATTTTGTGCAGCTA 57.174 33.333 0.00 0.00 0.00 3.32
1781 3091 5.811399 TGTGGTATATTTTGTGCAGCTAC 57.189 39.130 0.00 0.00 0.00 3.58
1782 3092 4.331443 TGTGGTATATTTTGTGCAGCTACG 59.669 41.667 0.00 0.00 0.00 3.51
1783 3093 3.311322 TGGTATATTTTGTGCAGCTACGC 59.689 43.478 0.00 0.00 0.00 4.42
1784 3094 3.311322 GGTATATTTTGTGCAGCTACGCA 59.689 43.478 0.00 0.00 40.32 5.24
1792 3102 2.776312 TGCAGCTACGCACTATCTAC 57.224 50.000 0.00 0.00 36.86 2.59
1793 3103 2.021457 TGCAGCTACGCACTATCTACA 58.979 47.619 0.00 0.00 36.86 2.74
1794 3104 2.223502 TGCAGCTACGCACTATCTACAC 60.224 50.000 0.00 0.00 36.86 2.90
1795 3105 2.223502 GCAGCTACGCACTATCTACACA 60.224 50.000 0.00 0.00 0.00 3.72
1796 3106 3.364062 CAGCTACGCACTATCTACACAC 58.636 50.000 0.00 0.00 0.00 3.82
1797 3107 2.358267 AGCTACGCACTATCTACACACC 59.642 50.000 0.00 0.00 0.00 4.16
1798 3108 2.543238 GCTACGCACTATCTACACACCC 60.543 54.545 0.00 0.00 0.00 4.61
1799 3109 1.552578 ACGCACTATCTACACACCCA 58.447 50.000 0.00 0.00 0.00 4.51
1800 3110 2.108168 ACGCACTATCTACACACCCAT 58.892 47.619 0.00 0.00 0.00 4.00
1801 3111 2.500098 ACGCACTATCTACACACCCATT 59.500 45.455 0.00 0.00 0.00 3.16
1802 3112 3.123804 CGCACTATCTACACACCCATTC 58.876 50.000 0.00 0.00 0.00 2.67
1803 3113 3.123804 GCACTATCTACACACCCATTCG 58.876 50.000 0.00 0.00 0.00 3.34
1804 3114 3.123804 CACTATCTACACACCCATTCGC 58.876 50.000 0.00 0.00 0.00 4.70
1805 3115 2.102588 ACTATCTACACACCCATTCGCC 59.897 50.000 0.00 0.00 0.00 5.54
1806 3116 1.204146 ATCTACACACCCATTCGCCT 58.796 50.000 0.00 0.00 0.00 5.52
1807 3117 1.855295 TCTACACACCCATTCGCCTA 58.145 50.000 0.00 0.00 0.00 3.93
1808 3118 2.181125 TCTACACACCCATTCGCCTAA 58.819 47.619 0.00 0.00 0.00 2.69
1809 3119 2.093869 TCTACACACCCATTCGCCTAAC 60.094 50.000 0.00 0.00 0.00 2.34
1810 3120 0.322187 ACACACCCATTCGCCTAACC 60.322 55.000 0.00 0.00 0.00 2.85
1811 3121 0.035439 CACACCCATTCGCCTAACCT 60.035 55.000 0.00 0.00 0.00 3.50
1812 3122 0.252197 ACACCCATTCGCCTAACCTC 59.748 55.000 0.00 0.00 0.00 3.85
1813 3123 0.251916 CACCCATTCGCCTAACCTCA 59.748 55.000 0.00 0.00 0.00 3.86
1814 3124 1.134098 CACCCATTCGCCTAACCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
1815 3125 1.134098 ACCCATTCGCCTAACCTCATG 60.134 52.381 0.00 0.00 0.00 3.07
1816 3126 0.947244 CCATTCGCCTAACCTCATGC 59.053 55.000 0.00 0.00 0.00 4.06
1817 3127 0.947244 CATTCGCCTAACCTCATGCC 59.053 55.000 0.00 0.00 0.00 4.40
1818 3128 0.839946 ATTCGCCTAACCTCATGCCT 59.160 50.000 0.00 0.00 0.00 4.75
1819 3129 1.491668 TTCGCCTAACCTCATGCCTA 58.508 50.000 0.00 0.00 0.00 3.93
1820 3130 0.750850 TCGCCTAACCTCATGCCTAC 59.249 55.000 0.00 0.00 0.00 3.18
1821 3131 0.464036 CGCCTAACCTCATGCCTACA 59.536 55.000 0.00 0.00 0.00 2.74
1822 3132 1.070758 CGCCTAACCTCATGCCTACAT 59.929 52.381 0.00 0.00 36.79 2.29
1823 3133 2.299013 CGCCTAACCTCATGCCTACATA 59.701 50.000 0.00 0.00 33.67 2.29
1824 3134 3.615110 CGCCTAACCTCATGCCTACATAG 60.615 52.174 0.00 0.00 33.67 2.23
1825 3135 3.578716 GCCTAACCTCATGCCTACATAGA 59.421 47.826 0.00 0.00 33.67 1.98
1826 3136 4.322349 GCCTAACCTCATGCCTACATAGAG 60.322 50.000 0.00 0.00 33.67 2.43
1827 3137 3.760580 AACCTCATGCCTACATAGAGC 57.239 47.619 0.00 0.00 33.67 4.09
1828 3138 2.682594 ACCTCATGCCTACATAGAGCA 58.317 47.619 5.05 5.05 41.50 4.26
1829 3139 3.041211 ACCTCATGCCTACATAGAGCAA 58.959 45.455 6.27 0.00 40.46 3.91
1830 3140 3.455910 ACCTCATGCCTACATAGAGCAAA 59.544 43.478 6.27 0.02 40.46 3.68
1831 3141 4.080356 ACCTCATGCCTACATAGAGCAAAA 60.080 41.667 6.27 0.00 40.46 2.44
1832 3142 4.274459 CCTCATGCCTACATAGAGCAAAAC 59.726 45.833 6.27 0.00 40.46 2.43
1833 3143 4.842574 TCATGCCTACATAGAGCAAAACA 58.157 39.130 6.27 0.00 40.46 2.83
1834 3144 5.252547 TCATGCCTACATAGAGCAAAACAA 58.747 37.500 6.27 0.00 40.46 2.83
1835 3145 5.709631 TCATGCCTACATAGAGCAAAACAAA 59.290 36.000 6.27 0.00 40.46 2.83
1836 3146 6.208402 TCATGCCTACATAGAGCAAAACAAAA 59.792 34.615 6.27 0.00 40.46 2.44
1837 3147 6.012658 TGCCTACATAGAGCAAAACAAAAG 57.987 37.500 0.00 0.00 32.56 2.27
1838 3148 5.767665 TGCCTACATAGAGCAAAACAAAAGA 59.232 36.000 0.00 0.00 32.56 2.52
1839 3149 6.264292 TGCCTACATAGAGCAAAACAAAAGAA 59.736 34.615 0.00 0.00 32.56 2.52
1840 3150 7.145323 GCCTACATAGAGCAAAACAAAAGAAA 58.855 34.615 0.00 0.00 0.00 2.52
1841 3151 7.327032 GCCTACATAGAGCAAAACAAAAGAAAG 59.673 37.037 0.00 0.00 0.00 2.62
1842 3152 8.567948 CCTACATAGAGCAAAACAAAAGAAAGA 58.432 33.333 0.00 0.00 0.00 2.52
1843 3153 9.950680 CTACATAGAGCAAAACAAAAGAAAGAA 57.049 29.630 0.00 0.00 0.00 2.52
1845 3155 9.305925 ACATAGAGCAAAACAAAAGAAAGAAAG 57.694 29.630 0.00 0.00 0.00 2.62
1912 3227 5.551233 TCAGATAAGCTTAGTGCAAGTGTT 58.449 37.500 12.54 0.00 45.94 3.32
1913 3228 6.697395 TCAGATAAGCTTAGTGCAAGTGTTA 58.303 36.000 12.54 0.00 45.94 2.41
1916 3231 4.928661 AAGCTTAGTGCAAGTGTTATCG 57.071 40.909 0.00 0.00 45.94 2.92
1917 3232 4.188247 AGCTTAGTGCAAGTGTTATCGA 57.812 40.909 0.00 0.00 45.94 3.59
1919 3234 4.994852 AGCTTAGTGCAAGTGTTATCGAAA 59.005 37.500 0.00 0.00 45.94 3.46
1945 3279 2.639347 TCAGGATGAAGCTCAAGTGGAA 59.361 45.455 0.00 0.00 45.97 3.53
1987 3321 7.092668 ACAAACTAGATCTCTTAAGAATGGGCT 60.093 37.037 6.63 3.01 34.49 5.19
1998 3769 6.945435 TCTTAAGAATGGGCTGATGTGTTAAA 59.055 34.615 1.68 0.00 0.00 1.52
2014 3785 7.786178 TGTGTTAAACATCATGTATAGAGGC 57.214 36.000 0.00 0.00 32.36 4.70
2018 3789 4.672587 AACATCATGTATAGAGGCGTGT 57.327 40.909 0.00 0.00 0.00 4.49
2019 3790 5.784578 AACATCATGTATAGAGGCGTGTA 57.215 39.130 0.00 0.00 0.00 2.90
2020 3791 5.122512 ACATCATGTATAGAGGCGTGTAC 57.877 43.478 0.00 0.00 0.00 2.90
2021 3792 4.583073 ACATCATGTATAGAGGCGTGTACA 59.417 41.667 0.00 0.00 0.00 2.90
2022 3793 4.563337 TCATGTATAGAGGCGTGTACAC 57.437 45.455 16.32 16.32 30.67 2.90
2039 3810 7.342318 GTGTACACGTATTGTATTCTGTTGT 57.658 36.000 10.84 0.00 42.82 3.32
2040 3811 8.451687 GTGTACACGTATTGTATTCTGTTGTA 57.548 34.615 10.84 0.00 42.82 2.41
2042 3813 9.642327 TGTACACGTATTGTATTCTGTTGTAAT 57.358 29.630 0.00 0.00 42.82 1.89
2044 3815 8.193250 ACACGTATTGTATTCTGTTGTAATCC 57.807 34.615 0.00 0.00 36.32 3.01
2045 3816 8.038944 ACACGTATTGTATTCTGTTGTAATCCT 58.961 33.333 0.00 0.00 36.32 3.24
2046 3817 9.524106 CACGTATTGTATTCTGTTGTAATCCTA 57.476 33.333 0.00 0.00 0.00 2.94
2047 3818 9.745880 ACGTATTGTATTCTGTTGTAATCCTAG 57.254 33.333 0.00 0.00 0.00 3.02
2052 3823 7.952671 TGTATTCTGTTGTAATCCTAGCTAGG 58.047 38.462 30.94 30.94 45.02 3.02
2053 3824 7.563924 TGTATTCTGTTGTAATCCTAGCTAGGT 59.436 37.037 33.84 21.25 44.02 3.08
2054 3825 6.869206 TTCTGTTGTAATCCTAGCTAGGTT 57.131 37.500 33.84 27.53 44.02 3.50
2055 3826 7.966339 TTCTGTTGTAATCCTAGCTAGGTTA 57.034 36.000 33.84 26.67 44.02 2.85
2057 3828 8.548880 TCTGTTGTAATCCTAGCTAGGTTATT 57.451 34.615 33.84 27.97 44.02 1.40
2068 5175 6.670027 CCTAGCTAGGTTATTATGGATGGACT 59.330 42.308 28.90 0.00 38.69 3.85
2069 5176 6.613153 AGCTAGGTTATTATGGATGGACTC 57.387 41.667 0.00 0.00 0.00 3.36
2070 5177 5.485708 AGCTAGGTTATTATGGATGGACTCC 59.514 44.000 0.00 0.00 45.19 3.85
2074 5181 4.846940 GGTTATTATGGATGGACTCCTCCT 59.153 45.833 12.33 4.28 45.21 3.69
2075 5182 5.310857 GGTTATTATGGATGGACTCCTCCTT 59.689 44.000 12.33 9.57 45.21 3.36
2077 5184 7.182930 GGTTATTATGGATGGACTCCTCCTTAT 59.817 40.741 12.33 4.49 45.21 1.73
2078 5185 6.882768 ATTATGGATGGACTCCTCCTTATC 57.117 41.667 12.33 1.06 45.21 1.75
2082 5189 3.181412 GGATGGACTCCTCCTTATCTCCT 60.181 52.174 0.00 0.00 41.29 3.69
2083 5190 3.320610 TGGACTCCTCCTTATCTCCTG 57.679 52.381 0.00 0.00 37.48 3.86
2084 5191 2.587777 TGGACTCCTCCTTATCTCCTGT 59.412 50.000 0.00 0.00 37.48 4.00
2085 5192 3.792114 TGGACTCCTCCTTATCTCCTGTA 59.208 47.826 0.00 0.00 37.48 2.74
2086 5193 4.420552 TGGACTCCTCCTTATCTCCTGTAT 59.579 45.833 0.00 0.00 37.48 2.29
2088 5195 6.184789 GGACTCCTCCTTATCTCCTGTATAG 58.815 48.000 0.00 0.00 33.07 1.31
2090 5197 5.314841 ACTCCTCCTTATCTCCTGTATAGCT 59.685 44.000 0.00 0.00 0.00 3.32
2091 5198 6.183361 ACTCCTCCTTATCTCCTGTATAGCTT 60.183 42.308 0.00 0.00 0.00 3.74
2093 5200 7.766628 TCCTCCTTATCTCCTGTATAGCTTTA 58.233 38.462 0.00 0.00 0.00 1.85
2094 5201 7.670559 TCCTCCTTATCTCCTGTATAGCTTTAC 59.329 40.741 7.33 7.33 0.00 2.01
2095 5202 7.362229 CCTCCTTATCTCCTGTATAGCTTTACG 60.362 44.444 9.39 4.99 0.00 3.18
2096 5203 7.002879 TCCTTATCTCCTGTATAGCTTTACGT 58.997 38.462 9.39 0.00 0.00 3.57
2097 5204 7.040617 TCCTTATCTCCTGTATAGCTTTACGTG 60.041 40.741 9.39 5.35 0.00 4.49
2098 5205 7.040617 CCTTATCTCCTGTATAGCTTTACGTGA 60.041 40.741 9.39 7.40 0.00 4.35
2099 5206 5.752892 TCTCCTGTATAGCTTTACGTGAG 57.247 43.478 18.52 18.52 0.00 3.51
2100 5207 4.579340 TCTCCTGTATAGCTTTACGTGAGG 59.421 45.833 21.55 16.80 0.00 3.86
2101 5208 4.529897 TCCTGTATAGCTTTACGTGAGGA 58.470 43.478 14.15 14.15 0.00 3.71
2102 5209 5.138276 TCCTGTATAGCTTTACGTGAGGAT 58.862 41.667 14.15 0.00 0.00 3.24
2103 5210 5.241064 TCCTGTATAGCTTTACGTGAGGATC 59.759 44.000 14.15 0.00 0.00 3.36
2120 6443 7.113658 TGAGGATCAAGTCTCTGTAATAACC 57.886 40.000 0.00 0.00 45.97 2.85
2124 6447 7.507616 AGGATCAAGTCTCTGTAATAACCTAGG 59.492 40.741 7.41 7.41 0.00 3.02
2125 6448 6.466885 TCAAGTCTCTGTAATAACCTAGGC 57.533 41.667 9.30 0.00 0.00 3.93
2126 6449 5.955959 TCAAGTCTCTGTAATAACCTAGGCA 59.044 40.000 9.30 0.00 0.00 4.75
2127 6450 6.439375 TCAAGTCTCTGTAATAACCTAGGCAA 59.561 38.462 9.30 0.00 0.00 4.52
2128 6451 6.223351 AGTCTCTGTAATAACCTAGGCAAC 57.777 41.667 9.30 0.60 0.00 4.17
2133 9545 8.229605 TCTCTGTAATAACCTAGGCAACCTATA 58.770 37.037 9.30 0.00 35.36 1.31
2134 9546 8.186709 TCTGTAATAACCTAGGCAACCTATAC 57.813 38.462 9.30 4.40 35.36 1.47
2137 9549 6.683312 AATAACCTAGGCAACCTATACCTC 57.317 41.667 9.30 0.00 35.36 3.85
2139 9551 3.847081 ACCTAGGCAACCTATACCTCTC 58.153 50.000 9.30 0.00 35.36 3.20
2140 9552 2.820787 CCTAGGCAACCTATACCTCTCG 59.179 54.545 0.00 0.00 35.36 4.04
2143 9555 3.577919 AGGCAACCTATACCTCTCGATT 58.422 45.455 0.00 0.00 28.47 3.34
2149 9561 6.616947 CAACCTATACCTCTCGATTGATCTC 58.383 44.000 0.00 0.00 0.00 2.75
2154 9568 6.757897 ATACCTCTCGATTGATCTCTGATC 57.242 41.667 0.00 0.98 0.00 2.92
2163 9577 8.900983 TCGATTGATCTCTGATCGATCTATAT 57.099 34.615 25.02 13.41 44.53 0.86
2164 9578 9.988815 TCGATTGATCTCTGATCGATCTATATA 57.011 33.333 25.02 8.44 44.53 0.86
2174 9661 8.228464 TCTGATCGATCTATATAACGTGAACAC 58.772 37.037 25.02 0.00 0.00 3.32
2184 9671 3.041940 GTGAACACGTCCCTGCCG 61.042 66.667 0.00 0.00 0.00 5.69
2185 9672 4.980805 TGAACACGTCCCTGCCGC 62.981 66.667 0.00 0.00 0.00 6.53
2187 9705 4.988598 AACACGTCCCTGCCGCAG 62.989 66.667 13.82 13.82 0.00 5.18
2201 9719 2.240500 CGCAGAGGCATACGCTTCC 61.241 63.158 0.00 0.00 45.07 3.46
2204 9722 1.144936 AGAGGCATACGCTTCCAGC 59.855 57.895 0.00 0.00 45.07 4.85
2205 9723 1.889573 GAGGCATACGCTTCCAGCC 60.890 63.158 0.00 0.00 45.54 4.85
2214 9733 0.519077 CGCTTCCAGCCTTTTCTCAC 59.481 55.000 0.00 0.00 38.18 3.51
2215 9734 1.609208 GCTTCCAGCCTTTTCTCACA 58.391 50.000 0.00 0.00 34.48 3.58
2217 9736 2.094854 GCTTCCAGCCTTTTCTCACATG 60.095 50.000 0.00 0.00 34.48 3.21
2218 9737 2.205022 TCCAGCCTTTTCTCACATGG 57.795 50.000 0.00 0.00 0.00 3.66
2220 9739 2.642311 TCCAGCCTTTTCTCACATGGTA 59.358 45.455 0.00 0.00 0.00 3.25
2221 9740 3.266772 TCCAGCCTTTTCTCACATGGTAT 59.733 43.478 0.00 0.00 0.00 2.73
2222 9741 3.629398 CCAGCCTTTTCTCACATGGTATC 59.371 47.826 0.00 0.00 0.00 2.24
2223 9742 4.264253 CAGCCTTTTCTCACATGGTATCA 58.736 43.478 0.00 0.00 0.00 2.15
2224 9743 4.334759 CAGCCTTTTCTCACATGGTATCAG 59.665 45.833 0.00 0.00 0.00 2.90
2225 9744 4.225942 AGCCTTTTCTCACATGGTATCAGA 59.774 41.667 0.00 0.00 0.00 3.27
2227 9746 4.574013 CCTTTTCTCACATGGTATCAGAGC 59.426 45.833 0.00 0.00 0.00 4.09
2228 9747 3.827008 TTCTCACATGGTATCAGAGCC 57.173 47.619 0.00 0.00 0.00 4.70
2229 9748 3.037851 TCTCACATGGTATCAGAGCCT 57.962 47.619 0.00 0.00 0.00 4.58
2232 9751 3.378512 TCACATGGTATCAGAGCCTCTT 58.621 45.455 0.00 0.00 0.00 2.85
2233 9752 3.386078 TCACATGGTATCAGAGCCTCTTC 59.614 47.826 0.00 0.00 0.00 2.87
2234 9753 3.387374 CACATGGTATCAGAGCCTCTTCT 59.613 47.826 0.00 0.00 0.00 2.85
2236 9755 4.100808 ACATGGTATCAGAGCCTCTTCTTC 59.899 45.833 0.00 0.00 0.00 2.87
2237 9756 3.034635 TGGTATCAGAGCCTCTTCTTCC 58.965 50.000 0.00 0.00 0.00 3.46
2238 9757 3.304829 GGTATCAGAGCCTCTTCTTCCT 58.695 50.000 0.00 0.00 0.00 3.36
2239 9758 3.709141 GGTATCAGAGCCTCTTCTTCCTT 59.291 47.826 0.00 0.00 0.00 3.36
2240 9759 4.202212 GGTATCAGAGCCTCTTCTTCCTTC 60.202 50.000 0.00 0.00 0.00 3.46
2244 9763 1.843206 GAGCCTCTTCTTCCTTCCCAT 59.157 52.381 0.00 0.00 0.00 4.00
2245 9764 1.843206 AGCCTCTTCTTCCTTCCCATC 59.157 52.381 0.00 0.00 0.00 3.51
2246 9765 1.843206 GCCTCTTCTTCCTTCCCATCT 59.157 52.381 0.00 0.00 0.00 2.90
2247 9766 3.041946 GCCTCTTCTTCCTTCCCATCTA 58.958 50.000 0.00 0.00 0.00 1.98
2250 9769 4.657969 CCTCTTCTTCCTTCCCATCTATGT 59.342 45.833 0.00 0.00 0.00 2.29
2251 9770 5.131809 CCTCTTCTTCCTTCCCATCTATGTT 59.868 44.000 0.00 0.00 0.00 2.71
2252 9771 5.994250 TCTTCTTCCTTCCCATCTATGTTG 58.006 41.667 0.00 0.00 0.00 3.33
2254 9773 6.388100 TCTTCTTCCTTCCCATCTATGTTGAT 59.612 38.462 0.00 0.00 0.00 2.57
2257 9776 4.464008 TCCTTCCCATCTATGTTGATTGC 58.536 43.478 0.00 0.00 0.00 3.56
2259 9778 4.831155 CCTTCCCATCTATGTTGATTGCAT 59.169 41.667 0.00 0.00 0.00 3.96
2260 9779 5.048224 CCTTCCCATCTATGTTGATTGCATC 60.048 44.000 0.00 0.00 0.00 3.91
2261 9780 5.314718 TCCCATCTATGTTGATTGCATCT 57.685 39.130 0.00 0.00 0.00 2.90
2262 9781 5.698104 TCCCATCTATGTTGATTGCATCTT 58.302 37.500 0.00 0.00 0.00 2.40
2263 9782 5.766670 TCCCATCTATGTTGATTGCATCTTC 59.233 40.000 0.00 0.00 0.00 2.87
2264 9783 5.048224 CCCATCTATGTTGATTGCATCTTCC 60.048 44.000 0.00 0.00 0.00 3.46
2266 9785 6.072618 CCATCTATGTTGATTGCATCTTCCTC 60.073 42.308 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 50 1.645034 ACTGTTCATCTCCATTCGCG 58.355 50.000 0.00 0.00 0.00 5.87
43 52 3.996363 TGACAACTGTTCATCTCCATTCG 59.004 43.478 0.00 0.00 0.00 3.34
50 59 5.466819 CATGCATTTGACAACTGTTCATCT 58.533 37.500 0.00 0.00 0.00 2.90
262 314 7.007905 TGTTTTCGAACTTGAACTTGAAATTCG 59.992 33.333 10.78 0.00 38.96 3.34
314 366 9.767684 TGCTATTGATTACTGTATTTGTTTTCG 57.232 29.630 0.00 0.00 0.00 3.46
333 397 3.008375 TCTGGCCCTATAGCTTGCTATTG 59.992 47.826 18.58 16.16 0.00 1.90
346 420 0.177141 GTGTGCGTATTCTGGCCCTA 59.823 55.000 0.00 0.00 0.00 3.53
347 421 1.078426 GTGTGCGTATTCTGGCCCT 60.078 57.895 0.00 0.00 0.00 5.19
390 483 5.578336 GCTGCATCTCAAAGGGAAATTAAAC 59.422 40.000 0.00 0.00 0.00 2.01
468 569 7.148967 GCTTCGGTTTGATGTAAAAGACAATTC 60.149 37.037 0.00 0.00 42.78 2.17
531 638 8.784043 ACACCAACTTAATCTGAATTAACTCAC 58.216 33.333 0.00 0.00 34.43 3.51
565 672 5.467125 TCGGACATCGAGTTGTACCCAAC 62.467 52.174 0.00 0.00 43.74 3.77
566 673 1.067425 CGGACATCGAGTTGTACCCAA 60.067 52.381 0.00 0.00 42.43 4.12
567 674 0.528924 CGGACATCGAGTTGTACCCA 59.471 55.000 0.00 0.00 42.43 4.51
568 675 0.813184 TCGGACATCGAGTTGTACCC 59.187 55.000 0.00 0.00 43.74 3.69
578 685 6.918569 ACTCATAACTCTTTAATCGGACATCG 59.081 38.462 0.00 0.00 40.90 3.84
579 686 8.649973 AACTCATAACTCTTTAATCGGACATC 57.350 34.615 0.00 0.00 0.00 3.06
620 729 8.132995 CGACTTGTATCCAACACTACACATATA 58.867 37.037 0.00 0.00 38.00 0.86
643 752 0.930742 GATGCCGACGTCATCTCGAC 60.931 60.000 17.16 0.00 41.62 4.20
662 771 3.556543 ATTTGCGCACTGCCAACGG 62.557 57.895 11.12 0.00 45.60 4.44
757 867 0.588252 CAACAAGGTTCTCGCAGGTG 59.412 55.000 0.00 0.00 0.00 4.00
840 975 2.305927 GGCTGCTATTTATAGGCCCTGA 59.694 50.000 0.00 0.00 33.94 3.86
921 1056 1.220477 GCTCTCCTGGAAGTGAGGC 59.780 63.158 11.95 3.10 34.56 4.70
996 1140 0.246635 ACGACCCGGAAGACATCTTG 59.753 55.000 0.73 0.00 36.11 3.02
1047 1192 2.301583 GTTCTCCTTCTTGCTCCACTCT 59.698 50.000 0.00 0.00 0.00 3.24
1174 1320 1.003580 GACAAGGATCTGGAAGTGGCA 59.996 52.381 0.00 0.00 33.76 4.92
1265 1411 8.410912 ACAGTTTTTGGTTGAGTTATACCTTTC 58.589 33.333 0.00 0.00 35.41 2.62
1282 1433 5.396484 CATCCTATGTCTGCACAGTTTTTG 58.604 41.667 0.00 0.00 35.41 2.44
1292 1443 3.311871 CAGTTTGAGCATCCTATGTCTGC 59.688 47.826 0.00 0.00 36.15 4.26
1312 1463 7.935338 AATTATGTTCAACTGAAAACAGCAG 57.065 32.000 0.00 0.00 38.66 4.24
1314 1465 8.427774 GCTTAATTATGTTCAACTGAAAACAGC 58.572 33.333 0.00 0.00 38.66 4.40
1315 1466 9.462174 TGCTTAATTATGTTCAACTGAAAACAG 57.538 29.630 0.00 0.00 38.66 3.16
1316 1467 9.979578 ATGCTTAATTATGTTCAACTGAAAACA 57.020 25.926 0.00 0.00 39.52 2.83
1392 1557 4.741676 GTGCCTTTGACATTGAGTTCAAAG 59.258 41.667 15.93 15.93 40.75 2.77
1393 1558 4.159321 TGTGCCTTTGACATTGAGTTCAAA 59.841 37.500 0.00 0.00 39.55 2.69
1394 1559 3.698539 TGTGCCTTTGACATTGAGTTCAA 59.301 39.130 0.00 0.00 40.51 2.69
1395 1560 3.286353 TGTGCCTTTGACATTGAGTTCA 58.714 40.909 0.00 0.00 0.00 3.18
1396 1561 3.988379 TGTGCCTTTGACATTGAGTTC 57.012 42.857 0.00 0.00 0.00 3.01
1398 1563 3.023119 TGTTGTGCCTTTGACATTGAGT 58.977 40.909 0.00 0.00 0.00 3.41
1399 1564 3.713858 TGTTGTGCCTTTGACATTGAG 57.286 42.857 0.00 0.00 0.00 3.02
1400 1565 3.979948 CATGTTGTGCCTTTGACATTGA 58.020 40.909 0.00 0.00 30.78 2.57
1440 1641 7.445402 TGGGACTAAATGAAGAAGACTTTCAAG 59.555 37.037 0.00 0.00 36.39 3.02
1443 1645 7.745620 TTGGGACTAAATGAAGAAGACTTTC 57.254 36.000 0.00 0.00 36.39 2.62
1444 1646 8.579863 CATTTGGGACTAAATGAAGAAGACTTT 58.420 33.333 13.78 0.00 46.13 2.66
1445 1647 8.115490 CATTTGGGACTAAATGAAGAAGACTT 57.885 34.615 13.78 0.00 46.13 3.01
1446 1648 7.693969 CATTTGGGACTAAATGAAGAAGACT 57.306 36.000 13.78 0.00 46.13 3.24
1455 1657 9.449719 ACTAAACTAGTCATTTGGGACTAAATG 57.550 33.333 13.06 13.06 46.59 2.32
1479 1681 8.059461 CCAAATAATAGGGACTTTTTAGGGACT 58.941 37.037 0.00 0.00 41.75 3.85
1480 1682 7.837689 ACCAAATAATAGGGACTTTTTAGGGAC 59.162 37.037 0.00 0.00 41.75 4.46
1481 1683 7.946381 ACCAAATAATAGGGACTTTTTAGGGA 58.054 34.615 0.00 0.00 41.75 4.20
1482 1684 9.703677 TTACCAAATAATAGGGACTTTTTAGGG 57.296 33.333 0.00 0.00 41.75 3.53
1512 1714 8.265108 ACTAGAAAAAGTCCCTCTTAAAGACT 57.735 34.615 0.00 0.00 42.58 3.24
1513 1715 8.537049 GACTAGAAAAAGTCCCTCTTAAAGAC 57.463 38.462 0.00 0.00 40.06 3.01
1525 1727 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
1548 1754 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
1549 1755 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
1550 1756 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
1551 1757 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
1552 1758 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
1553 1759 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
1554 1760 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
1555 1761 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
1556 1762 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45
1557 1763 1.788229 AAGGGGGTGTTTGTTTCCAG 58.212 50.000 0.00 0.00 0.00 3.86
1558 1764 2.668625 GTAAGGGGGTGTTTGTTTCCA 58.331 47.619 0.00 0.00 0.00 3.53
1559 1765 1.965643 GGTAAGGGGGTGTTTGTTTCC 59.034 52.381 0.00 0.00 0.00 3.13
1560 1766 2.363038 GTGGTAAGGGGGTGTTTGTTTC 59.637 50.000 0.00 0.00 0.00 2.78
1561 1767 2.390696 GTGGTAAGGGGGTGTTTGTTT 58.609 47.619 0.00 0.00 0.00 2.83
1562 1768 1.411930 GGTGGTAAGGGGGTGTTTGTT 60.412 52.381 0.00 0.00 0.00 2.83
1563 1769 0.186630 GGTGGTAAGGGGGTGTTTGT 59.813 55.000 0.00 0.00 0.00 2.83
1564 1770 0.186386 TGGTGGTAAGGGGGTGTTTG 59.814 55.000 0.00 0.00 0.00 2.93
1565 1771 1.163408 ATGGTGGTAAGGGGGTGTTT 58.837 50.000 0.00 0.00 0.00 2.83
1566 1772 0.407918 CATGGTGGTAAGGGGGTGTT 59.592 55.000 0.00 0.00 0.00 3.32
1567 1773 2.083715 CATGGTGGTAAGGGGGTGT 58.916 57.895 0.00 0.00 0.00 4.16
1568 1774 1.379843 GCATGGTGGTAAGGGGGTG 60.380 63.158 0.00 0.00 0.00 4.61
1569 1775 1.221213 ATGCATGGTGGTAAGGGGGT 61.221 55.000 0.00 0.00 0.00 4.95
1570 1776 0.756442 CATGCATGGTGGTAAGGGGG 60.756 60.000 19.40 0.00 0.00 5.40
1571 1777 1.394266 GCATGCATGGTGGTAAGGGG 61.394 60.000 27.34 0.00 0.00 4.79
1572 1778 0.683828 TGCATGCATGGTGGTAAGGG 60.684 55.000 27.34 0.00 0.00 3.95
1573 1779 1.405872 ATGCATGCATGGTGGTAAGG 58.594 50.000 31.74 0.00 35.03 2.69
1706 3016 7.059156 ACTGCAAGATCCATCTAAGCTTTTAT 58.941 34.615 3.20 0.00 38.28 1.40
1707 3017 6.418101 ACTGCAAGATCCATCTAAGCTTTTA 58.582 36.000 3.20 0.00 38.28 1.52
1716 3026 5.304101 CCTAGTAAGACTGCAAGATCCATCT 59.696 44.000 0.00 0.00 39.22 2.90
1721 3031 4.664150 AGCCTAGTAAGACTGCAAGATC 57.336 45.455 0.00 0.00 37.43 2.75
1735 3045 8.376270 ACAAATCTACAAGAAAACTAGCCTAGT 58.624 33.333 0.00 0.00 41.73 2.57
1737 3047 7.606456 CCACAAATCTACAAGAAAACTAGCCTA 59.394 37.037 0.00 0.00 0.00 3.93
1738 3048 6.431234 CCACAAATCTACAAGAAAACTAGCCT 59.569 38.462 0.00 0.00 0.00 4.58
1739 3049 6.206829 ACCACAAATCTACAAGAAAACTAGCC 59.793 38.462 0.00 0.00 0.00 3.93
1740 3050 7.203255 ACCACAAATCTACAAGAAAACTAGC 57.797 36.000 0.00 0.00 0.00 3.42
1754 3064 6.153340 AGCTGCACAAAATATACCACAAATCT 59.847 34.615 1.02 0.00 0.00 2.40
1756 3066 6.284891 AGCTGCACAAAATATACCACAAAT 57.715 33.333 1.02 0.00 0.00 2.32
1778 3088 2.686405 TGGGTGTGTAGATAGTGCGTAG 59.314 50.000 0.00 0.00 0.00 3.51
1779 3089 2.725637 TGGGTGTGTAGATAGTGCGTA 58.274 47.619 0.00 0.00 0.00 4.42
1780 3090 1.552578 TGGGTGTGTAGATAGTGCGT 58.447 50.000 0.00 0.00 0.00 5.24
1781 3091 2.890808 ATGGGTGTGTAGATAGTGCG 57.109 50.000 0.00 0.00 0.00 5.34
1782 3092 3.123804 CGAATGGGTGTGTAGATAGTGC 58.876 50.000 0.00 0.00 0.00 4.40
1783 3093 3.123804 GCGAATGGGTGTGTAGATAGTG 58.876 50.000 0.00 0.00 0.00 2.74
1784 3094 2.102588 GGCGAATGGGTGTGTAGATAGT 59.897 50.000 0.00 0.00 0.00 2.12
1785 3095 2.365617 AGGCGAATGGGTGTGTAGATAG 59.634 50.000 0.00 0.00 0.00 2.08
1786 3096 2.394632 AGGCGAATGGGTGTGTAGATA 58.605 47.619 0.00 0.00 0.00 1.98
1787 3097 1.204146 AGGCGAATGGGTGTGTAGAT 58.796 50.000 0.00 0.00 0.00 1.98
1788 3098 1.855295 TAGGCGAATGGGTGTGTAGA 58.145 50.000 0.00 0.00 0.00 2.59
1789 3099 2.277084 GTTAGGCGAATGGGTGTGTAG 58.723 52.381 0.00 0.00 0.00 2.74
1790 3100 1.065998 GGTTAGGCGAATGGGTGTGTA 60.066 52.381 0.00 0.00 0.00 2.90
1791 3101 0.322187 GGTTAGGCGAATGGGTGTGT 60.322 55.000 0.00 0.00 0.00 3.72
1792 3102 0.035439 AGGTTAGGCGAATGGGTGTG 60.035 55.000 0.00 0.00 0.00 3.82
1793 3103 0.252197 GAGGTTAGGCGAATGGGTGT 59.748 55.000 0.00 0.00 0.00 4.16
1794 3104 0.251916 TGAGGTTAGGCGAATGGGTG 59.748 55.000 0.00 0.00 0.00 4.61
1795 3105 1.134098 CATGAGGTTAGGCGAATGGGT 60.134 52.381 0.00 0.00 0.00 4.51
1796 3106 1.597742 CATGAGGTTAGGCGAATGGG 58.402 55.000 0.00 0.00 0.00 4.00
1797 3107 0.947244 GCATGAGGTTAGGCGAATGG 59.053 55.000 0.00 0.00 0.00 3.16
1798 3108 0.947244 GGCATGAGGTTAGGCGAATG 59.053 55.000 0.00 0.00 0.00 2.67
1799 3109 0.839946 AGGCATGAGGTTAGGCGAAT 59.160 50.000 0.00 0.00 0.00 3.34
1800 3110 1.138266 GTAGGCATGAGGTTAGGCGAA 59.862 52.381 0.00 0.00 0.00 4.70
1801 3111 0.750850 GTAGGCATGAGGTTAGGCGA 59.249 55.000 0.00 0.00 0.00 5.54
1802 3112 0.464036 TGTAGGCATGAGGTTAGGCG 59.536 55.000 0.00 0.00 0.00 5.52
1803 3113 2.938956 ATGTAGGCATGAGGTTAGGC 57.061 50.000 0.00 0.00 33.37 3.93
1804 3114 4.322349 GCTCTATGTAGGCATGAGGTTAGG 60.322 50.000 0.00 0.00 36.58 2.69
1805 3115 4.281941 TGCTCTATGTAGGCATGAGGTTAG 59.718 45.833 0.00 0.00 36.58 2.34
1806 3116 4.223144 TGCTCTATGTAGGCATGAGGTTA 58.777 43.478 0.00 0.00 36.58 2.85
1807 3117 3.041211 TGCTCTATGTAGGCATGAGGTT 58.959 45.455 0.00 0.00 36.58 3.50
1808 3118 2.682594 TGCTCTATGTAGGCATGAGGT 58.317 47.619 0.00 0.00 36.58 3.85
1809 3119 3.758755 TTGCTCTATGTAGGCATGAGG 57.241 47.619 0.00 0.00 36.58 3.86
1810 3120 4.877823 TGTTTTGCTCTATGTAGGCATGAG 59.122 41.667 0.00 0.00 36.58 2.90
1811 3121 4.842574 TGTTTTGCTCTATGTAGGCATGA 58.157 39.130 0.00 0.00 36.58 3.07
1812 3122 5.565592 TTGTTTTGCTCTATGTAGGCATG 57.434 39.130 0.00 0.00 36.58 4.06
1813 3123 6.434028 TCTTTTGTTTTGCTCTATGTAGGCAT 59.566 34.615 0.00 0.00 39.03 4.40
1814 3124 5.767665 TCTTTTGTTTTGCTCTATGTAGGCA 59.232 36.000 0.00 0.00 0.00 4.75
1815 3125 6.254281 TCTTTTGTTTTGCTCTATGTAGGC 57.746 37.500 0.00 0.00 0.00 3.93
1816 3126 8.567948 TCTTTCTTTTGTTTTGCTCTATGTAGG 58.432 33.333 0.00 0.00 0.00 3.18
1817 3127 9.950680 TTCTTTCTTTTGTTTTGCTCTATGTAG 57.049 29.630 0.00 0.00 0.00 2.74
1819 3129 9.305925 CTTTCTTTCTTTTGTTTTGCTCTATGT 57.694 29.630 0.00 0.00 0.00 2.29
1820 3130 9.520204 TCTTTCTTTCTTTTGTTTTGCTCTATG 57.480 29.630 0.00 0.00 0.00 2.23
1883 3193 8.696374 ACTTGCACTAAGCTTATCTGAACTATA 58.304 33.333 6.64 0.00 45.94 1.31
1885 3195 6.813649 CACTTGCACTAAGCTTATCTGAACTA 59.186 38.462 6.64 0.00 45.94 2.24
1903 3218 6.125327 TGAAAAGTTTCGATAACACTTGCA 57.875 33.333 11.33 0.00 40.01 4.08
1912 3227 6.173339 AGCTTCATCCTGAAAAGTTTCGATA 58.827 36.000 0.00 0.00 40.01 2.92
1913 3228 5.006386 AGCTTCATCCTGAAAAGTTTCGAT 58.994 37.500 0.00 0.00 40.01 3.59
1916 3231 5.695851 TGAGCTTCATCCTGAAAAGTTTC 57.304 39.130 0.00 0.00 35.73 2.78
1917 3232 5.595952 ACTTGAGCTTCATCCTGAAAAGTTT 59.404 36.000 0.00 0.00 32.76 2.66
1919 3234 4.518211 CACTTGAGCTTCATCCTGAAAAGT 59.482 41.667 0.00 0.94 35.37 2.66
1938 3272 5.722021 ACAACTTTGTTCACTTTCCACTT 57.278 34.783 0.00 0.00 38.47 3.16
1945 3279 8.556213 TCTAGTTTGTACAACTTTGTTCACTT 57.444 30.769 8.07 0.00 42.35 3.16
1998 3769 4.583073 TGTACACGCCTCTATACATGATGT 59.417 41.667 2.65 2.65 0.00 3.06
2018 3789 9.304731 GGATTACAACAGAATACAATACGTGTA 57.695 33.333 0.00 0.00 46.72 2.90
2019 3790 8.038944 AGGATTACAACAGAATACAATACGTGT 58.961 33.333 0.00 0.00 44.82 4.49
2020 3791 8.420374 AGGATTACAACAGAATACAATACGTG 57.580 34.615 0.00 0.00 0.00 4.49
2021 3792 9.745880 CTAGGATTACAACAGAATACAATACGT 57.254 33.333 0.00 0.00 0.00 3.57
2022 3793 8.700644 GCTAGGATTACAACAGAATACAATACG 58.299 37.037 0.00 0.00 0.00 3.06
2023 3794 9.765795 AGCTAGGATTACAACAGAATACAATAC 57.234 33.333 0.00 0.00 0.00 1.89
2025 3796 9.988815 CTAGCTAGGATTACAACAGAATACAAT 57.011 33.333 13.32 0.00 0.00 2.71
2026 3797 8.421784 CCTAGCTAGGATTACAACAGAATACAA 58.578 37.037 32.79 0.00 46.63 2.41
2027 3798 7.563924 ACCTAGCTAGGATTACAACAGAATACA 59.436 37.037 40.40 0.00 46.63 2.29
2028 3799 7.953752 ACCTAGCTAGGATTACAACAGAATAC 58.046 38.462 40.40 0.00 46.63 1.89
2029 3800 8.548880 AACCTAGCTAGGATTACAACAGAATA 57.451 34.615 40.40 0.00 46.63 1.75
2030 3801 7.439108 AACCTAGCTAGGATTACAACAGAAT 57.561 36.000 40.40 14.95 46.63 2.40
2032 3803 8.548880 AATAACCTAGCTAGGATTACAACAGA 57.451 34.615 40.40 15.80 46.63 3.41
2035 3806 9.654663 CCATAATAACCTAGCTAGGATTACAAC 57.345 37.037 40.40 0.00 46.63 3.32
2037 3808 9.784376 ATCCATAATAACCTAGCTAGGATTACA 57.216 33.333 40.40 24.27 46.63 2.41
2039 3810 9.213777 CCATCCATAATAACCTAGCTAGGATTA 57.786 37.037 40.40 31.68 46.63 1.75
2040 3811 7.906736 TCCATCCATAATAACCTAGCTAGGATT 59.093 37.037 40.40 30.79 46.63 3.01
2042 3813 6.668283 GTCCATCCATAATAACCTAGCTAGGA 59.332 42.308 40.40 23.28 46.63 2.94
2044 3815 7.726033 AGTCCATCCATAATAACCTAGCTAG 57.274 40.000 14.20 14.20 0.00 3.42
2045 3816 7.719871 GAGTCCATCCATAATAACCTAGCTA 57.280 40.000 0.00 0.00 0.00 3.32
2046 3817 6.613153 GAGTCCATCCATAATAACCTAGCT 57.387 41.667 0.00 0.00 0.00 3.32
2068 5175 5.869540 AGCTATACAGGAGATAAGGAGGA 57.130 43.478 0.00 0.00 0.00 3.71
2069 5176 6.926630 AAAGCTATACAGGAGATAAGGAGG 57.073 41.667 0.00 0.00 0.00 4.30
2070 5177 7.175293 ACGTAAAGCTATACAGGAGATAAGGAG 59.825 40.741 0.00 0.00 0.00 3.69
2074 5181 7.040617 CCTCACGTAAAGCTATACAGGAGATAA 60.041 40.741 0.00 0.00 31.96 1.75
2075 5182 6.430308 CCTCACGTAAAGCTATACAGGAGATA 59.570 42.308 0.00 0.00 31.96 1.98
2077 5184 4.579340 CCTCACGTAAAGCTATACAGGAGA 59.421 45.833 0.00 0.00 31.96 3.71
2078 5185 4.579340 TCCTCACGTAAAGCTATACAGGAG 59.421 45.833 0.00 0.00 0.00 3.69
2082 5189 6.096423 ACTTGATCCTCACGTAAAGCTATACA 59.904 38.462 0.00 0.00 26.27 2.29
2083 5190 6.505272 ACTTGATCCTCACGTAAAGCTATAC 58.495 40.000 0.00 0.00 26.27 1.47
2084 5191 6.546403 AGACTTGATCCTCACGTAAAGCTATA 59.454 38.462 0.00 0.00 28.41 1.31
2085 5192 5.361285 AGACTTGATCCTCACGTAAAGCTAT 59.639 40.000 0.00 0.00 28.41 2.97
2086 5193 4.705507 AGACTTGATCCTCACGTAAAGCTA 59.294 41.667 0.00 0.00 28.41 3.32
2088 5195 3.851098 AGACTTGATCCTCACGTAAAGC 58.149 45.455 0.00 0.00 28.41 3.51
2090 5197 4.523173 ACAGAGACTTGATCCTCACGTAAA 59.477 41.667 0.00 0.00 28.41 2.01
2091 5198 4.079970 ACAGAGACTTGATCCTCACGTAA 58.920 43.478 0.00 0.00 28.41 3.18
2093 5200 2.520069 ACAGAGACTTGATCCTCACGT 58.480 47.619 0.00 0.00 31.12 4.49
2094 5201 4.703645 TTACAGAGACTTGATCCTCACG 57.296 45.455 0.00 0.00 32.07 4.35
2095 5202 6.981559 GGTTATTACAGAGACTTGATCCTCAC 59.018 42.308 0.00 0.00 32.07 3.51
2096 5203 6.897966 AGGTTATTACAGAGACTTGATCCTCA 59.102 38.462 0.00 0.00 32.07 3.86
2097 5204 7.354751 AGGTTATTACAGAGACTTGATCCTC 57.645 40.000 0.00 0.00 0.00 3.71
2098 5205 7.507616 CCTAGGTTATTACAGAGACTTGATCCT 59.492 40.741 0.00 0.00 0.00 3.24
2099 5206 7.662897 CCTAGGTTATTACAGAGACTTGATCC 58.337 42.308 0.00 0.00 0.00 3.36
2100 5207 7.149307 GCCTAGGTTATTACAGAGACTTGATC 58.851 42.308 11.31 0.00 0.00 2.92
2101 5208 6.611642 TGCCTAGGTTATTACAGAGACTTGAT 59.388 38.462 11.31 0.00 0.00 2.57
2102 5209 5.955959 TGCCTAGGTTATTACAGAGACTTGA 59.044 40.000 11.31 0.00 0.00 3.02
2103 5210 6.222038 TGCCTAGGTTATTACAGAGACTTG 57.778 41.667 11.31 0.00 0.00 3.16
2104 5211 6.351966 GGTTGCCTAGGTTATTACAGAGACTT 60.352 42.308 11.31 0.00 0.00 3.01
2105 5212 5.128991 GGTTGCCTAGGTTATTACAGAGACT 59.871 44.000 11.31 0.00 0.00 3.24
2106 5213 5.128991 AGGTTGCCTAGGTTATTACAGAGAC 59.871 44.000 11.31 0.00 28.47 3.36
2107 5214 5.278061 AGGTTGCCTAGGTTATTACAGAGA 58.722 41.667 11.31 0.00 28.47 3.10
2109 5216 7.234166 GGTATAGGTTGCCTAGGTTATTACAGA 59.766 40.741 11.31 0.00 39.70 3.41
2110 5217 7.234988 AGGTATAGGTTGCCTAGGTTATTACAG 59.765 40.741 11.31 0.00 38.90 2.74
2120 6443 3.752665 TCGAGAGGTATAGGTTGCCTAG 58.247 50.000 1.25 0.00 41.09 3.02
2124 6447 4.585955 TCAATCGAGAGGTATAGGTTGC 57.414 45.455 0.00 0.00 0.00 4.17
2125 6448 6.432783 AGAGATCAATCGAGAGGTATAGGTTG 59.567 42.308 0.00 0.00 0.00 3.77
2126 6449 6.432783 CAGAGATCAATCGAGAGGTATAGGTT 59.567 42.308 0.00 0.00 0.00 3.50
2127 6450 5.943416 CAGAGATCAATCGAGAGGTATAGGT 59.057 44.000 0.00 0.00 0.00 3.08
2128 6451 6.176896 TCAGAGATCAATCGAGAGGTATAGG 58.823 44.000 0.00 0.00 0.00 2.57
2133 9545 3.501828 CGATCAGAGATCAATCGAGAGGT 59.498 47.826 11.90 0.00 43.73 3.85
2134 9546 3.750652 TCGATCAGAGATCAATCGAGAGG 59.249 47.826 14.51 0.00 44.43 3.69
2143 9555 8.821894 CACGTTATATAGATCGATCAGAGATCA 58.178 37.037 26.47 6.48 45.05 2.92
2149 9561 7.214635 CGTGTTCACGTTATATAGATCGATCAG 59.785 40.741 26.47 9.63 0.00 2.90
2166 9580 3.041940 GGCAGGGACGTGTTCACG 61.042 66.667 21.13 21.13 39.31 4.35
2167 9581 3.041940 CGGCAGGGACGTGTTCAC 61.042 66.667 0.00 0.00 0.00 3.18
2184 9671 1.153369 TGGAAGCGTATGCCTCTGC 60.153 57.895 2.51 0.00 44.31 4.26
2185 9672 2.983433 CTGGAAGCGTATGCCTCTG 58.017 57.895 2.51 0.00 44.31 3.35
2201 9719 4.264253 TGATACCATGTGAGAAAAGGCTG 58.736 43.478 0.00 0.00 0.00 4.85
2204 9722 4.574013 GCTCTGATACCATGTGAGAAAAGG 59.426 45.833 0.00 0.00 0.00 3.11
2205 9723 4.574013 GGCTCTGATACCATGTGAGAAAAG 59.426 45.833 0.00 0.00 0.00 2.27
2214 9733 4.502950 GGAAGAAGAGGCTCTGATACCATG 60.503 50.000 19.53 0.00 0.00 3.66
2215 9734 3.645687 GGAAGAAGAGGCTCTGATACCAT 59.354 47.826 19.53 0.00 0.00 3.55
2217 9736 3.304829 AGGAAGAAGAGGCTCTGATACC 58.695 50.000 19.53 18.20 0.00 2.73
2218 9737 4.202212 GGAAGGAAGAAGAGGCTCTGATAC 60.202 50.000 19.53 8.15 0.00 2.24
2220 9739 2.771372 GGAAGGAAGAAGAGGCTCTGAT 59.229 50.000 19.53 6.87 0.00 2.90
2221 9740 2.183679 GGAAGGAAGAAGAGGCTCTGA 58.816 52.381 19.53 0.00 0.00 3.27
2222 9741 1.209261 GGGAAGGAAGAAGAGGCTCTG 59.791 57.143 19.53 0.00 0.00 3.35
2223 9742 1.203364 TGGGAAGGAAGAAGAGGCTCT 60.203 52.381 12.24 12.24 0.00 4.09
2224 9743 1.280457 TGGGAAGGAAGAAGAGGCTC 58.720 55.000 6.34 6.34 0.00 4.70
2225 9744 1.843206 GATGGGAAGGAAGAAGAGGCT 59.157 52.381 0.00 0.00 0.00 4.58
2227 9746 4.657969 ACATAGATGGGAAGGAAGAAGAGG 59.342 45.833 0.00 0.00 0.00 3.69
2228 9747 5.885449 ACATAGATGGGAAGGAAGAAGAG 57.115 43.478 0.00 0.00 0.00 2.85
2229 9748 5.726308 TCAACATAGATGGGAAGGAAGAAGA 59.274 40.000 0.00 0.00 0.00 2.87
2232 9751 6.359804 CAATCAACATAGATGGGAAGGAAGA 58.640 40.000 0.00 0.00 0.00 2.87
2233 9752 5.009410 GCAATCAACATAGATGGGAAGGAAG 59.991 44.000 0.00 0.00 0.00 3.46
2234 9753 4.889409 GCAATCAACATAGATGGGAAGGAA 59.111 41.667 0.00 0.00 0.00 3.36
2236 9755 4.209538 TGCAATCAACATAGATGGGAAGG 58.790 43.478 0.00 0.00 0.00 3.46
2237 9756 6.010294 GATGCAATCAACATAGATGGGAAG 57.990 41.667 0.00 0.00 44.70 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.