Multiple sequence alignment - TraesCS1A01G402900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G402900 chr1A 100.000 3678 0 0 1 3678 566483090 566479413 0.000000e+00 6793.0
1 TraesCS1A01G402900 chr1A 96.471 85 3 0 681 765 566482328 566482244 1.380000e-29 141.0
2 TraesCS1A01G402900 chr1A 96.471 85 3 0 763 847 566482410 566482326 1.380000e-29 141.0
3 TraesCS1A01G402900 chr1A 95.833 48 0 2 1188 1233 566481861 566481814 3.940000e-10 76.8
4 TraesCS1A01G402900 chr1A 95.833 48 0 2 1230 1277 566481903 566481858 3.940000e-10 76.8
5 TraesCS1A01G402900 chr1B 93.670 1090 56 7 2082 3163 657173732 657172648 0.000000e+00 1618.0
6 TraesCS1A01G402900 chr1B 93.400 697 32 10 1230 1923 657174416 657173731 0.000000e+00 1020.0
7 TraesCS1A01G402900 chr1B 91.083 471 34 7 763 1231 657174838 657174374 6.700000e-177 630.0
8 TraesCS1A01G402900 chr1B 83.365 523 45 12 252 766 657175243 657174755 2.610000e-121 446.0
9 TraesCS1A01G402900 chr1B 84.783 414 34 13 3272 3678 657172526 657172135 4.450000e-104 388.0
10 TraesCS1A01G402900 chr1B 82.469 405 49 14 64 468 657175659 657175277 5.890000e-88 335.0
11 TraesCS1A01G402900 chr1B 96.951 164 5 0 1921 2084 623195845 623195682 3.620000e-70 276.0
12 TraesCS1A01G402900 chr1D 91.837 882 40 10 2082 2934 472524043 472523165 0.000000e+00 1201.0
13 TraesCS1A01G402900 chr1D 94.692 697 30 6 1230 1923 472524734 472524042 0.000000e+00 1075.0
14 TraesCS1A01G402900 chr1D 90.275 473 41 3 763 1233 472525158 472524689 6.750000e-172 614.0
15 TraesCS1A01G402900 chr1D 86.667 495 41 15 3194 3678 472522840 472522361 3.250000e-145 525.0
16 TraesCS1A01G402900 chr1D 89.494 257 23 2 510 766 472525327 472525075 4.580000e-84 322.0
17 TraesCS1A01G402900 chr1D 84.043 188 25 4 2978 3163 472523081 472522897 3.770000e-40 176.0
18 TraesCS1A01G402900 chr1D 90.909 99 2 4 376 474 472525426 472525335 3.860000e-25 126.0
19 TraesCS1A01G402900 chr2D 95.954 173 5 2 1922 2094 362930969 362930799 2.800000e-71 279.0
20 TraesCS1A01G402900 chr2D 96.914 162 5 0 1922 2083 87407525 87407364 4.680000e-69 272.0
21 TraesCS1A01G402900 chr4A 97.531 162 4 0 1922 2083 517406632 517406471 1.010000e-70 278.0
22 TraesCS1A01G402900 chr3D 96.970 165 5 0 1922 2086 537154702 537154866 1.010000e-70 278.0
23 TraesCS1A01G402900 chr5B 96.951 164 5 0 1922 2085 490757412 490757575 3.620000e-70 276.0
24 TraesCS1A01G402900 chr4D 94.886 176 9 0 1922 2097 437295926 437295751 3.620000e-70 276.0
25 TraesCS1A01G402900 chr6B 95.833 168 7 0 1922 2089 119526970 119526803 4.680000e-69 272.0
26 TraesCS1A01G402900 chr4B 95.858 169 6 1 1915 2083 135218216 135218049 4.680000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G402900 chr1A 566479413 566483090 3677 True 1445.72 6793 96.921600 1 3678 5 chr1A.!!$R1 3677
1 TraesCS1A01G402900 chr1B 657172135 657175659 3524 True 739.50 1618 88.128333 64 3678 6 chr1B.!!$R2 3614
2 TraesCS1A01G402900 chr1D 472522361 472525426 3065 True 577.00 1201 89.702429 376 3678 7 chr1D.!!$R1 3302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1146 0.174162 GCCCTTGTGCTTTATGGCTG 59.826 55.0 0.00 0.00 35.99 4.85 F
1032 1260 0.741326 CATCTGATGAGACGACCGGT 59.259 55.0 6.92 6.92 0.00 5.28 F
1921 2153 0.178873 TCCTGCCCCCTAGTTCTGTT 60.179 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2134 0.178873 AACAGAACTAGGGGGCAGGA 60.179 55.0 0.00 0.0 0.0 3.86 R
2631 2883 0.984230 TGGATTCCTTGTTCTCGGCT 59.016 50.0 3.95 0.0 0.0 5.52 R
3357 3705 0.179029 CCGATCCTGGCCCGTTAAAT 60.179 55.0 0.00 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.689414 GGGAACGGGCGGAATTTT 58.311 55.556 0.00 0.00 0.00 1.82
25 26 1.214325 GGGAACGGGCGGAATTTTG 59.786 57.895 0.00 0.00 0.00 2.44
26 27 1.214325 GGAACGGGCGGAATTTTGG 59.786 57.895 0.00 0.00 0.00 3.28
27 28 1.214325 GAACGGGCGGAATTTTGGG 59.786 57.895 0.00 0.00 0.00 4.12
28 29 2.220615 GAACGGGCGGAATTTTGGGG 62.221 60.000 0.00 0.00 0.00 4.96
29 30 4.141965 CGGGCGGAATTTTGGGGC 62.142 66.667 0.00 0.00 0.00 5.80
30 31 3.000233 GGGCGGAATTTTGGGGCA 61.000 61.111 0.00 0.00 0.00 5.36
31 32 2.264480 GGCGGAATTTTGGGGCAC 59.736 61.111 0.00 0.00 0.00 5.01
47 48 3.801114 GGCACCATAAATTCCCTTGAC 57.199 47.619 0.00 0.00 0.00 3.18
48 49 2.430694 GGCACCATAAATTCCCTTGACC 59.569 50.000 0.00 0.00 0.00 4.02
49 50 2.099098 GCACCATAAATTCCCTTGACCG 59.901 50.000 0.00 0.00 0.00 4.79
50 51 2.687935 CACCATAAATTCCCTTGACCGG 59.312 50.000 0.00 0.00 0.00 5.28
51 52 1.681264 CCATAAATTCCCTTGACCGGC 59.319 52.381 0.00 0.00 0.00 6.13
52 53 1.681264 CATAAATTCCCTTGACCGGCC 59.319 52.381 0.00 0.00 0.00 6.13
53 54 0.393267 TAAATTCCCTTGACCGGCCG 60.393 55.000 21.04 21.04 0.00 6.13
54 55 2.420466 AAATTCCCTTGACCGGCCGT 62.420 55.000 26.12 12.57 0.00 5.68
55 56 1.555477 AATTCCCTTGACCGGCCGTA 61.555 55.000 26.12 7.20 0.00 4.02
56 57 1.342672 ATTCCCTTGACCGGCCGTAT 61.343 55.000 26.12 12.31 0.00 3.06
57 58 1.555477 TTCCCTTGACCGGCCGTATT 61.555 55.000 26.12 7.77 0.00 1.89
58 59 1.078001 CCCTTGACCGGCCGTATTT 60.078 57.895 26.12 4.75 0.00 1.40
59 60 1.093496 CCCTTGACCGGCCGTATTTC 61.093 60.000 26.12 14.82 0.00 2.17
60 61 0.391927 CCTTGACCGGCCGTATTTCA 60.392 55.000 26.12 17.30 0.00 2.69
61 62 1.006832 CTTGACCGGCCGTATTTCAG 58.993 55.000 26.12 9.27 0.00 3.02
62 63 0.322322 TTGACCGGCCGTATTTCAGT 59.678 50.000 26.12 12.96 0.00 3.41
88 89 1.078214 CGGCCCAGAGCTTGATTGA 60.078 57.895 0.00 0.00 43.05 2.57
94 95 2.611292 CCCAGAGCTTGATTGATTCGTC 59.389 50.000 0.00 0.00 0.00 4.20
96 97 3.063180 CCAGAGCTTGATTGATTCGTCAC 59.937 47.826 0.00 0.00 0.00 3.67
97 98 2.926200 AGAGCTTGATTGATTCGTCACG 59.074 45.455 0.00 0.00 0.00 4.35
101 102 4.268644 AGCTTGATTGATTCGTCACGTATG 59.731 41.667 0.00 0.00 0.00 2.39
109 110 1.693467 TCGTCACGTATGTGCTTGAC 58.307 50.000 10.38 2.63 46.01 3.18
155 156 2.364317 TTGGCCGGAGAGAGGGAG 60.364 66.667 5.05 0.00 0.00 4.30
167 168 4.138290 GAGAGAGGGAGATCATTCGTGTA 58.862 47.826 0.00 0.00 0.00 2.90
168 169 4.735369 AGAGAGGGAGATCATTCGTGTAT 58.265 43.478 0.00 0.00 0.00 2.29
174 175 4.262036 GGGAGATCATTCGTGTATGCAGTA 60.262 45.833 0.00 0.00 0.00 2.74
184 185 4.640647 TCGTGTATGCAGTATCTCTGTTCT 59.359 41.667 0.00 0.00 45.23 3.01
199 200 1.230324 GTTCTCTGCACTGGGTTGTC 58.770 55.000 0.00 0.00 0.00 3.18
201 202 0.681733 TCTCTGCACTGGGTTGTCTC 59.318 55.000 0.00 0.00 0.00 3.36
211 212 0.535335 GGGTTGTCTCGCAGGTCATA 59.465 55.000 0.00 0.00 0.00 2.15
212 213 1.139058 GGGTTGTCTCGCAGGTCATAT 59.861 52.381 0.00 0.00 0.00 1.78
220 221 3.437049 TCTCGCAGGTCATATATCAGACG 59.563 47.826 2.48 0.00 35.63 4.18
224 225 4.058124 GCAGGTCATATATCAGACGCAAA 58.942 43.478 2.48 0.00 35.63 3.68
225 226 4.084328 GCAGGTCATATATCAGACGCAAAC 60.084 45.833 2.48 0.00 35.63 2.93
229 230 5.405571 GGTCATATATCAGACGCAAACGATT 59.594 40.000 0.00 0.00 43.93 3.34
242 243 4.408993 CAAACGATTGCAGATCTTGTCA 57.591 40.909 0.00 0.00 0.00 3.58
243 244 4.153986 CAAACGATTGCAGATCTTGTCAC 58.846 43.478 0.00 0.00 0.00 3.67
257 258 4.109766 TCTTGTCACGGTATCATTTAGCG 58.890 43.478 2.99 2.99 43.16 4.26
258 259 2.198406 TGTCACGGTATCATTTAGCGC 58.802 47.619 0.00 0.00 41.50 5.92
261 262 2.361119 TCACGGTATCATTTAGCGCTCT 59.639 45.455 16.34 0.00 41.50 4.09
265 266 3.802139 CGGTATCATTTAGCGCTCTTGAA 59.198 43.478 16.34 5.45 0.00 2.69
266 267 4.270084 CGGTATCATTTAGCGCTCTTGAAA 59.730 41.667 16.34 9.78 0.00 2.69
276 277 5.627499 AGCGCTCTTGAAATGTTGATTTA 57.373 34.783 2.64 0.00 31.58 1.40
278 279 4.260656 GCGCTCTTGAAATGTTGATTTACG 59.739 41.667 0.00 0.00 31.58 3.18
281 282 7.398746 CGCTCTTGAAATGTTGATTTACGATA 58.601 34.615 0.00 0.00 31.58 2.92
292 293 8.234136 TGTTGATTTACGATACATAGAGAGGT 57.766 34.615 0.00 0.00 0.00 3.85
308 309 2.877335 GAGGTTAACTCGTAGGTGCTG 58.123 52.381 5.42 0.00 36.29 4.41
309 310 2.230750 GAGGTTAACTCGTAGGTGCTGT 59.769 50.000 5.42 0.00 36.29 4.40
310 311 3.424703 AGGTTAACTCGTAGGTGCTGTA 58.575 45.455 5.42 0.00 0.00 2.74
311 312 3.192212 AGGTTAACTCGTAGGTGCTGTAC 59.808 47.826 5.42 0.00 0.00 2.90
312 313 3.192212 GGTTAACTCGTAGGTGCTGTACT 59.808 47.826 5.42 0.00 0.00 2.73
316 317 4.332428 ACTCGTAGGTGCTGTACTTTTT 57.668 40.909 0.00 0.00 0.00 1.94
343 344 6.932947 ACTCGTTGGCTTTAAGTACTTCTAT 58.067 36.000 12.39 0.00 0.00 1.98
359 360 5.896073 CTTCTATTGAAGTCCTGGGGTAT 57.104 43.478 8.55 0.00 43.38 2.73
370 371 6.290870 AGTCCTGGGGTATACTTATGTACT 57.709 41.667 2.25 0.00 0.00 2.73
371 372 6.313324 AGTCCTGGGGTATACTTATGTACTC 58.687 44.000 2.25 0.00 0.00 2.59
372 373 5.479724 GTCCTGGGGTATACTTATGTACTCC 59.520 48.000 2.25 0.00 42.20 3.85
374 375 6.567650 TCCTGGGGTATACTTATGTACTCCTA 59.432 42.308 2.25 0.00 42.32 2.94
441 442 6.670695 AGGACAATAAGCCTTGTTCAAAAT 57.329 33.333 5.72 0.00 39.40 1.82
443 444 5.120674 GGACAATAAGCCTTGTTCAAAATGC 59.879 40.000 0.00 0.00 39.40 3.56
449 450 2.872842 GCCTTGTTCAAAATGCTGCCAT 60.873 45.455 0.00 0.00 0.00 4.40
451 452 3.187637 CCTTGTTCAAAATGCTGCCATTG 59.812 43.478 0.00 0.00 40.69 2.82
482 700 0.451783 GTTATTGCTTGCCCCACTCG 59.548 55.000 0.00 0.00 0.00 4.18
523 741 3.737559 ACCTTGGTTCAAGATGGCATA 57.262 42.857 0.00 0.00 43.42 3.14
542 760 2.090524 CCGGTGTTAGGTTCGACGC 61.091 63.158 0.00 0.00 0.00 5.19
555 773 3.424487 GTTCGACGCTAGGACTTAGAAC 58.576 50.000 0.00 0.00 0.00 3.01
591 809 3.315191 CCTGTTAAACAACTGGACCAGTG 59.685 47.826 27.79 21.66 44.62 3.66
600 818 1.202770 ACTGGACCAGTGTTAGTTGGC 60.203 52.381 26.61 0.00 43.63 4.52
610 828 1.414919 TGTTAGTTGGCGTCTGGTTCT 59.585 47.619 0.00 0.00 0.00 3.01
614 832 1.149148 GTTGGCGTCTGGTTCTCTTC 58.851 55.000 0.00 0.00 0.00 2.87
663 887 5.243060 GGGTTGCACAGTTTTATTTACCTCT 59.757 40.000 0.00 0.00 0.00 3.69
664 888 6.379386 GGTTGCACAGTTTTATTTACCTCTC 58.621 40.000 0.00 0.00 0.00 3.20
665 889 6.379386 GTTGCACAGTTTTATTTACCTCTCC 58.621 40.000 0.00 0.00 0.00 3.71
666 890 5.626142 TGCACAGTTTTATTTACCTCTCCA 58.374 37.500 0.00 0.00 0.00 3.86
667 891 6.245408 TGCACAGTTTTATTTACCTCTCCAT 58.755 36.000 0.00 0.00 0.00 3.41
712 937 8.664798 TGTGTATGTCTTATTACATTGACTTGC 58.335 33.333 0.00 0.00 40.52 4.01
713 938 8.122952 GTGTATGTCTTATTACATTGACTTGCC 58.877 37.037 0.00 0.00 40.52 4.52
714 939 7.826744 TGTATGTCTTATTACATTGACTTGCCA 59.173 33.333 0.00 0.00 40.52 4.92
715 940 6.741992 TGTCTTATTACATTGACTTGCCAG 57.258 37.500 0.00 0.00 0.00 4.85
716 941 6.237901 TGTCTTATTACATTGACTTGCCAGT 58.762 36.000 0.00 0.00 35.17 4.00
717 942 7.390823 TGTCTTATTACATTGACTTGCCAGTA 58.609 34.615 0.00 0.00 31.22 2.74
718 943 7.333423 TGTCTTATTACATTGACTTGCCAGTAC 59.667 37.037 0.00 0.00 31.22 2.73
719 944 7.549488 GTCTTATTACATTGACTTGCCAGTACT 59.451 37.037 0.00 0.00 31.22 2.73
720 945 8.100791 TCTTATTACATTGACTTGCCAGTACTT 58.899 33.333 0.00 0.00 31.22 2.24
721 946 9.378551 CTTATTACATTGACTTGCCAGTACTTA 57.621 33.333 0.00 0.00 31.22 2.24
722 947 9.899661 TTATTACATTGACTTGCCAGTACTTAT 57.100 29.630 0.00 0.00 31.22 1.73
723 948 8.807948 ATTACATTGACTTGCCAGTACTTATT 57.192 30.769 0.00 0.00 31.22 1.40
724 949 8.630054 TTACATTGACTTGCCAGTACTTATTT 57.370 30.769 0.00 0.00 31.22 1.40
725 950 9.727859 TTACATTGACTTGCCAGTACTTATTTA 57.272 29.630 0.00 0.00 31.22 1.40
726 951 8.807948 ACATTGACTTGCCAGTACTTATTTAT 57.192 30.769 0.00 0.00 31.22 1.40
727 952 8.677300 ACATTGACTTGCCAGTACTTATTTATG 58.323 33.333 0.00 0.00 31.22 1.90
728 953 8.677300 CATTGACTTGCCAGTACTTATTTATGT 58.323 33.333 0.00 0.00 31.22 2.29
729 954 9.899661 ATTGACTTGCCAGTACTTATTTATGTA 57.100 29.630 0.00 0.00 31.22 2.29
730 955 9.727859 TTGACTTGCCAGTACTTATTTATGTAA 57.272 29.630 0.00 0.00 31.22 2.41
731 956 9.378551 TGACTTGCCAGTACTTATTTATGTAAG 57.621 33.333 0.00 0.00 34.20 2.34
732 957 8.209917 ACTTGCCAGTACTTATTTATGTAAGC 57.790 34.615 0.00 0.00 35.55 3.09
733 958 7.827236 ACTTGCCAGTACTTATTTATGTAAGCA 59.173 33.333 0.00 0.00 35.55 3.91
734 959 8.746052 TTGCCAGTACTTATTTATGTAAGCAT 57.254 30.769 0.00 0.00 35.55 3.79
735 960 8.378172 TGCCAGTACTTATTTATGTAAGCATC 57.622 34.615 0.00 0.00 35.55 3.91
736 961 8.210946 TGCCAGTACTTATTTATGTAAGCATCT 58.789 33.333 0.00 0.00 35.55 2.90
737 962 9.057089 GCCAGTACTTATTTATGTAAGCATCTT 57.943 33.333 0.00 0.00 35.55 2.40
748 973 5.862924 TGTAAGCATCTTCTTTGTACTGC 57.137 39.130 0.00 0.00 0.00 4.40
749 974 5.551233 TGTAAGCATCTTCTTTGTACTGCT 58.449 37.500 0.00 0.00 41.42 4.24
750 975 6.697395 TGTAAGCATCTTCTTTGTACTGCTA 58.303 36.000 2.82 0.00 38.91 3.49
751 976 6.590292 TGTAAGCATCTTCTTTGTACTGCTAC 59.410 38.462 2.82 3.54 38.91 3.58
752 977 5.152623 AGCATCTTCTTTGTACTGCTACA 57.847 39.130 0.57 0.00 38.13 2.74
753 978 5.738909 AGCATCTTCTTTGTACTGCTACAT 58.261 37.500 0.57 0.00 38.13 2.29
754 979 6.176183 AGCATCTTCTTTGTACTGCTACATT 58.824 36.000 0.57 0.00 38.13 2.71
755 980 7.331026 AGCATCTTCTTTGTACTGCTACATTA 58.669 34.615 0.57 0.00 38.13 1.90
756 981 7.989741 AGCATCTTCTTTGTACTGCTACATTAT 59.010 33.333 0.57 0.00 38.13 1.28
757 982 8.066595 GCATCTTCTTTGTACTGCTACATTATG 58.933 37.037 0.00 0.00 32.70 1.90
758 983 8.554528 CATCTTCTTTGTACTGCTACATTATGG 58.445 37.037 0.00 0.00 32.70 2.74
759 984 7.620880 TCTTCTTTGTACTGCTACATTATGGT 58.379 34.615 0.00 0.00 32.70 3.55
760 985 8.100791 TCTTCTTTGTACTGCTACATTATGGTT 58.899 33.333 0.00 0.00 32.70 3.67
761 986 7.609760 TCTTTGTACTGCTACATTATGGTTG 57.390 36.000 0.00 0.00 32.70 3.77
762 987 7.390823 TCTTTGTACTGCTACATTATGGTTGA 58.609 34.615 0.00 0.00 32.70 3.18
763 988 7.880713 TCTTTGTACTGCTACATTATGGTTGAA 59.119 33.333 0.00 0.00 32.70 2.69
764 989 7.987750 TTGTACTGCTACATTATGGTTGAAA 57.012 32.000 0.00 0.00 32.70 2.69
765 990 8.574251 TTGTACTGCTACATTATGGTTGAAAT 57.426 30.769 0.00 0.00 32.70 2.17
766 991 8.574251 TGTACTGCTACATTATGGTTGAAATT 57.426 30.769 0.00 0.00 0.00 1.82
767 992 9.019656 TGTACTGCTACATTATGGTTGAAATTT 57.980 29.630 0.00 0.00 0.00 1.82
768 993 9.855021 GTACTGCTACATTATGGTTGAAATTTT 57.145 29.630 0.00 0.00 0.00 1.82
769 994 8.761575 ACTGCTACATTATGGTTGAAATTTTG 57.238 30.769 0.00 0.00 0.00 2.44
770 995 8.367156 ACTGCTACATTATGGTTGAAATTTTGT 58.633 29.630 0.00 0.00 0.00 2.83
771 996 8.531622 TGCTACATTATGGTTGAAATTTTGTG 57.468 30.769 0.00 0.00 0.00 3.33
772 997 8.147058 TGCTACATTATGGTTGAAATTTTGTGT 58.853 29.630 0.00 0.00 0.00 3.72
813 1038 7.333672 GGACTTCCCAGTACTTGTTTATGTAAG 59.666 40.741 0.00 0.00 31.22 2.34
817 1042 6.821665 TCCCAGTACTTGTTTATGTAAGCATC 59.178 38.462 0.00 0.00 36.58 3.91
847 1072 7.987750 TGTACTGCTACATTATGGTTGAAAA 57.012 32.000 0.00 0.00 0.00 2.29
895 1121 9.364989 ACGTTTCATATTTATTCCCAATTTGTG 57.635 29.630 0.00 0.00 0.00 3.33
904 1130 3.182887 TCCCAATTTGTGTATGCCCTT 57.817 42.857 0.00 0.00 0.00 3.95
908 1136 2.995258 CAATTTGTGTATGCCCTTGTGC 59.005 45.455 0.00 0.00 0.00 4.57
915 1143 3.023119 TGTATGCCCTTGTGCTTTATGG 58.977 45.455 0.00 0.00 0.00 2.74
918 1146 0.174162 GCCCTTGTGCTTTATGGCTG 59.826 55.000 0.00 0.00 35.99 4.85
926 1154 4.746729 TGTGCTTTATGGCTGCTAATTTG 58.253 39.130 0.00 0.00 0.00 2.32
927 1155 4.220382 TGTGCTTTATGGCTGCTAATTTGT 59.780 37.500 0.00 0.00 0.00 2.83
935 1163 3.318839 TGGCTGCTAATTTGTATGGCATC 59.681 43.478 1.65 0.00 32.39 3.91
937 1165 3.610114 GCTGCTAATTTGTATGGCATCGG 60.610 47.826 1.65 0.00 32.39 4.18
954 1182 7.629157 TGGCATCGGGATAAATTATCTGATAA 58.371 34.615 12.17 12.17 35.52 1.75
998 1226 2.442212 TTGAGCATCCGTTCGTACAA 57.558 45.000 0.00 0.00 0.00 2.41
1023 1251 1.685517 TCGGAGAAGCCATCTGATGAG 59.314 52.381 18.92 9.97 38.96 2.90
1029 1257 0.749649 AGCCATCTGATGAGACGACC 59.250 55.000 18.92 0.00 0.00 4.79
1032 1260 0.741326 CATCTGATGAGACGACCGGT 59.259 55.000 6.92 6.92 0.00 5.28
1081 1309 1.021202 TGTGAAAGTGGAAACTGCCG 58.979 50.000 0.00 0.00 0.00 5.69
1087 1315 1.070786 GTGGAAACTGCCGACCAGA 59.929 57.895 9.57 0.00 44.64 3.86
1141 1369 6.456988 GCAGGAGGTATCATCTTTTGTTAACG 60.457 42.308 0.26 0.00 0.00 3.18
1143 1371 7.495934 CAGGAGGTATCATCTTTTGTTAACGAT 59.504 37.037 0.26 0.00 0.00 3.73
1299 1527 4.876107 CCATAAGCACAATCCGACTTTACT 59.124 41.667 0.00 0.00 0.00 2.24
1341 1569 7.415653 GCAGTAATCAAGAAAAAGTATGGAGGG 60.416 40.741 0.00 0.00 0.00 4.30
1459 1687 5.876357 TGTATAAAGCAGTCAGGGAAGTTT 58.124 37.500 0.00 0.00 0.00 2.66
1494 1722 4.762251 GCTCCATATCCATTAGTTTCACCC 59.238 45.833 0.00 0.00 0.00 4.61
1587 1818 7.542534 TTGTACTGTTCTTTTCGAAAGCTAA 57.457 32.000 10.98 4.34 32.41 3.09
1638 1869 1.661341 GCGATCTTGCTCACCTGATT 58.339 50.000 0.00 0.00 0.00 2.57
1727 1958 5.180492 CCGAAATTACAGGTGCTAAAACTGA 59.820 40.000 0.00 0.00 36.17 3.41
1839 2070 6.992063 AGTGTATTTGCTGGTCTTTCTATG 57.008 37.500 0.00 0.00 0.00 2.23
1840 2071 6.476378 AGTGTATTTGCTGGTCTTTCTATGT 58.524 36.000 0.00 0.00 0.00 2.29
1921 2153 0.178873 TCCTGCCCCCTAGTTCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
1922 2154 1.079825 TCCTGCCCCCTAGTTCTGTTA 59.920 52.381 0.00 0.00 0.00 2.41
1923 2155 1.209747 CCTGCCCCCTAGTTCTGTTAC 59.790 57.143 0.00 0.00 0.00 2.50
1924 2156 2.188817 CTGCCCCCTAGTTCTGTTACT 58.811 52.381 0.00 0.00 0.00 2.24
1925 2157 2.168728 CTGCCCCCTAGTTCTGTTACTC 59.831 54.545 0.00 0.00 0.00 2.59
1926 2158 1.485480 GCCCCCTAGTTCTGTTACTCC 59.515 57.143 0.00 0.00 0.00 3.85
1927 2159 2.117051 CCCCCTAGTTCTGTTACTCCC 58.883 57.143 0.00 0.00 0.00 4.30
1928 2160 2.292984 CCCCCTAGTTCTGTTACTCCCT 60.293 54.545 0.00 0.00 0.00 4.20
1929 2161 3.032459 CCCCTAGTTCTGTTACTCCCTC 58.968 54.545 0.00 0.00 0.00 4.30
1930 2162 3.032459 CCCTAGTTCTGTTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
1931 2163 2.688958 CCTAGTTCTGTTACTCCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
1932 2164 2.305858 AGTTCTGTTACTCCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
1933 2165 2.606378 AGTTCTGTTACTCCCTCCGTT 58.394 47.619 0.00 0.00 0.00 4.44
1934 2166 2.561858 AGTTCTGTTACTCCCTCCGTTC 59.438 50.000 0.00 0.00 0.00 3.95
1935 2167 1.553706 TCTGTTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
1936 2168 1.076677 TCTGTTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
1937 2169 2.309755 TCTGTTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
1938 2170 3.094572 CTGTTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
1939 2171 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
1940 2172 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
1941 2173 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
1942 2174 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
1943 2175 7.068702 TGTTACTCCCTCCGTTCCTAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
1944 2176 7.564660 TGTTACTCCCTCCGTTCCTAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
1945 2177 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1946 2178 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1947 2179 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1948 2180 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1949 2181 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1950 2182 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1951 2183 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1952 2184 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1969 2201 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
1970 2202 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
1971 2203 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
1978 2210 8.362464 AGAGATTCCACTACAAACTACATACA 57.638 34.615 0.00 0.00 0.00 2.29
1979 2211 8.470805 AGAGATTCCACTACAAACTACATACAG 58.529 37.037 0.00 0.00 0.00 2.74
1980 2212 8.362464 AGATTCCACTACAAACTACATACAGA 57.638 34.615 0.00 0.00 0.00 3.41
1981 2213 8.982723 AGATTCCACTACAAACTACATACAGAT 58.017 33.333 0.00 0.00 0.00 2.90
1982 2214 8.948631 ATTCCACTACAAACTACATACAGATG 57.051 34.615 0.00 0.00 39.16 2.90
1984 2216 8.584063 TCCACTACAAACTACATACAGATGTA 57.416 34.615 0.00 0.00 44.77 2.29
1985 2217 9.197306 TCCACTACAAACTACATACAGATGTAT 57.803 33.333 0.00 0.00 45.42 2.29
2024 2256 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2025 2257 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2026 2258 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2027 2259 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2028 2260 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2029 2261 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2030 2262 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2031 2263 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2032 2264 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2033 2265 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2034 2266 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2035 2267 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2036 2268 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2037 2269 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2038 2270 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2039 2271 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2040 2272 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
2041 2273 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
2042 2274 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
2043 2275 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
2044 2276 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
2059 2291 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
2060 2292 8.826765 TCCATAGTGGAATCTCTAAAAAGACTT 58.173 33.333 0.00 0.00 45.00 3.01
2077 2309 9.434275 AAAAAGACTTATATTTAGGAATGGGGG 57.566 33.333 0.00 0.00 0.00 5.40
2279 2511 9.248291 GATTCAGTGTCAATTACATGTTTTGTT 57.752 29.630 2.30 0.00 41.10 2.83
2295 2527 9.743057 CATGTTTTGTTACCTCATTCTTGTTAA 57.257 29.630 0.00 0.00 0.00 2.01
2335 2567 4.197750 AGCTGATATCCTTTTGCTGTCAG 58.802 43.478 0.00 0.00 35.82 3.51
2496 2730 9.114965 CGACGGTACTTCATATTTACAAGATAG 57.885 37.037 0.00 0.00 0.00 2.08
2531 2765 5.376625 TCCAGTACATTTATCTTGCCATCC 58.623 41.667 0.00 0.00 0.00 3.51
2612 2846 2.580601 CGACCCCGAACCAGGAGTT 61.581 63.158 0.00 0.00 43.07 3.01
2667 2919 1.330655 CCACCGAGTAGCTCCCATGT 61.331 60.000 0.00 0.00 0.00 3.21
2698 2950 1.003118 ACGGAACTCTGCCATTTGCTA 59.997 47.619 0.00 0.00 42.00 3.49
2699 2951 2.292267 CGGAACTCTGCCATTTGCTAT 58.708 47.619 0.00 0.00 42.00 2.97
2731 2983 5.007430 CCGTCTCGTTGCTCTAGTAATAAGA 59.993 44.000 0.00 0.00 0.00 2.10
2733 2985 6.411492 CGTCTCGTTGCTCTAGTAATAAGAAC 59.589 42.308 0.00 0.00 0.00 3.01
2735 2987 7.429920 GTCTCGTTGCTCTAGTAATAAGAACTG 59.570 40.741 0.00 0.00 0.00 3.16
2739 2991 6.222038 TGCTCTAGTAATAAGAACTGTGGG 57.778 41.667 0.00 0.00 0.00 4.61
2742 2994 2.629051 AGTAATAAGAACTGTGGGCGC 58.371 47.619 0.00 0.00 0.00 6.53
2744 2996 0.679960 AATAAGAACTGTGGGCGCCC 60.680 55.000 39.40 39.40 0.00 6.13
2751 3003 4.338710 TGTGGGCGCCCTGTAACC 62.339 66.667 43.34 24.00 36.94 2.85
2856 3108 0.974383 GTTCGGTATGGGATCGGGAT 59.026 55.000 0.00 0.00 0.00 3.85
2925 3188 6.485830 AGCATGAGCCTGAAACTTATACTA 57.514 37.500 0.00 0.00 43.56 1.82
2985 3288 2.871216 GAACTCCCCCGCTGTAAGGC 62.871 65.000 0.00 0.00 0.00 4.35
3026 3329 4.142403 TGGAATTTCATGAAGGAATCGTGC 60.142 41.667 8.41 0.00 43.53 5.34
3120 3426 5.947228 AACGTGTTCATGACATGATTTCT 57.053 34.783 18.62 0.01 46.20 2.52
3126 3432 7.269084 CGTGTTCATGACATGATTTCTAAACAC 59.731 37.037 24.51 24.51 46.20 3.32
3130 3436 6.429692 TCATGACATGATTTCTAAACACGGTT 59.570 34.615 14.24 0.00 33.59 4.44
3140 3446 6.456447 TTCTAAACACGGTTCGAACTTATG 57.544 37.500 26.32 21.98 0.00 1.90
3148 3456 5.120208 CACGGTTCGAACTTATGACAAGATT 59.880 40.000 26.32 0.00 0.00 2.40
3153 3461 7.544566 GGTTCGAACTTATGACAAGATTACTGA 59.455 37.037 26.32 0.00 0.00 3.41
3167 3511 7.384387 ACAAGATTACTGAAGAACGTTTACCTC 59.616 37.037 0.46 0.00 0.00 3.85
3211 3555 4.864704 TGGTTTGAAAAGAACATAGCCC 57.135 40.909 0.00 0.00 0.00 5.19
3214 3558 4.988540 GGTTTGAAAAGAACATAGCCCAAC 59.011 41.667 0.00 0.00 0.00 3.77
3225 3569 3.055094 ACATAGCCCAACGTTGAGAGATT 60.055 43.478 29.35 10.65 0.00 2.40
3228 3572 1.880027 GCCCAACGTTGAGAGATTTGT 59.120 47.619 29.35 0.00 0.00 2.83
3231 3575 4.537015 CCCAACGTTGAGAGATTTGTTTC 58.463 43.478 29.35 0.00 0.00 2.78
3232 3576 4.275936 CCCAACGTTGAGAGATTTGTTTCT 59.724 41.667 29.35 0.00 0.00 2.52
3233 3577 5.221048 CCCAACGTTGAGAGATTTGTTTCTT 60.221 40.000 29.35 0.00 0.00 2.52
3307 3655 7.874940 AGATCTGAGAGAAGAATATTGAGTCG 58.125 38.462 0.00 0.00 0.00 4.18
3317 3665 9.739276 AGAAGAATATTGAGTCGAGAGATATCT 57.261 33.333 4.47 4.47 45.19 1.98
3369 3717 3.436577 TTCCACTTATTTAACGGGCCA 57.563 42.857 4.39 0.00 0.00 5.36
3386 3734 1.517257 CAGGATCGGACGCTGACAC 60.517 63.158 0.00 0.00 0.00 3.67
3396 3744 2.011741 ACGCTGACACGTGAGTCCAA 62.012 55.000 25.01 0.00 46.28 3.53
3442 3790 4.554036 GCCCGCTAGAGGCCCTTG 62.554 72.222 7.06 0.00 45.16 3.61
3443 3791 3.866582 CCCGCTAGAGGCCCTTGG 61.867 72.222 7.06 0.00 37.74 3.61
3445 3793 2.367202 CCGCTAGAGGCCCTTGGAA 61.367 63.158 0.00 0.00 37.74 3.53
3446 3794 1.144936 CGCTAGAGGCCCTTGGAAG 59.855 63.158 0.00 0.00 37.74 3.46
3515 3866 3.209812 TCCTCCTCCATCGCGTCG 61.210 66.667 5.77 0.00 0.00 5.12
3533 3884 1.386550 GCACCCAACCCTAACCCAT 59.613 57.895 0.00 0.00 0.00 4.00
3622 3978 2.350134 GTCGTCCCCTTCAACCCC 59.650 66.667 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.963687 AATTCCGCCCGTTCCCGAC 62.964 63.158 0.00 0.00 35.63 4.79
5 6 2.751357 AAAATTCCGCCCGTTCCCGA 62.751 55.000 0.00 0.00 35.63 5.14
6 7 2.337246 AAAATTCCGCCCGTTCCCG 61.337 57.895 0.00 0.00 0.00 5.14
7 8 1.214325 CAAAATTCCGCCCGTTCCC 59.786 57.895 0.00 0.00 0.00 3.97
8 9 1.214325 CCAAAATTCCGCCCGTTCC 59.786 57.895 0.00 0.00 0.00 3.62
9 10 1.214325 CCCAAAATTCCGCCCGTTC 59.786 57.895 0.00 0.00 0.00 3.95
10 11 2.279810 CCCCAAAATTCCGCCCGTT 61.280 57.895 0.00 0.00 0.00 4.44
11 12 2.678580 CCCCAAAATTCCGCCCGT 60.679 61.111 0.00 0.00 0.00 5.28
12 13 4.141965 GCCCCAAAATTCCGCCCG 62.142 66.667 0.00 0.00 0.00 6.13
13 14 3.000233 TGCCCCAAAATTCCGCCC 61.000 61.111 0.00 0.00 0.00 6.13
14 15 2.264480 GTGCCCCAAAATTCCGCC 59.736 61.111 0.00 0.00 0.00 6.13
15 16 1.898330 ATGGTGCCCCAAAATTCCGC 61.898 55.000 0.00 0.00 46.04 5.54
16 17 1.479709 TATGGTGCCCCAAAATTCCG 58.520 50.000 0.00 0.00 46.04 4.30
17 18 3.990959 TTTATGGTGCCCCAAAATTCC 57.009 42.857 0.00 0.00 46.04 3.01
18 19 4.881273 GGAATTTATGGTGCCCCAAAATTC 59.119 41.667 23.90 23.90 46.04 2.17
19 20 4.324952 GGGAATTTATGGTGCCCCAAAATT 60.325 41.667 15.47 15.47 46.04 1.82
20 21 3.201930 GGGAATTTATGGTGCCCCAAAAT 59.798 43.478 0.00 0.00 46.04 1.82
21 22 2.573915 GGGAATTTATGGTGCCCCAAAA 59.426 45.455 0.00 0.00 46.04 2.44
22 23 2.192263 GGGAATTTATGGTGCCCCAAA 58.808 47.619 0.00 0.00 46.04 3.28
23 24 1.364328 AGGGAATTTATGGTGCCCCAA 59.636 47.619 0.00 0.00 46.04 4.12
25 26 1.762370 CAAGGGAATTTATGGTGCCCC 59.238 52.381 0.00 0.00 39.68 5.80
26 27 2.430694 GTCAAGGGAATTTATGGTGCCC 59.569 50.000 0.00 0.00 39.12 5.36
27 28 2.430694 GGTCAAGGGAATTTATGGTGCC 59.569 50.000 0.00 0.00 0.00 5.01
28 29 2.099098 CGGTCAAGGGAATTTATGGTGC 59.901 50.000 0.00 0.00 0.00 5.01
29 30 2.687935 CCGGTCAAGGGAATTTATGGTG 59.312 50.000 0.00 0.00 0.00 4.17
30 31 2.948600 GCCGGTCAAGGGAATTTATGGT 60.949 50.000 1.90 0.00 0.00 3.55
31 32 1.681264 GCCGGTCAAGGGAATTTATGG 59.319 52.381 1.90 0.00 0.00 2.74
32 33 1.681264 GGCCGGTCAAGGGAATTTATG 59.319 52.381 0.00 0.00 0.00 1.90
33 34 1.749286 CGGCCGGTCAAGGGAATTTAT 60.749 52.381 20.10 0.00 0.00 1.40
34 35 0.393267 CGGCCGGTCAAGGGAATTTA 60.393 55.000 20.10 0.00 0.00 1.40
35 36 1.677633 CGGCCGGTCAAGGGAATTT 60.678 57.895 20.10 0.00 0.00 1.82
36 37 1.555477 TACGGCCGGTCAAGGGAATT 61.555 55.000 31.76 5.83 0.00 2.17
37 38 1.342672 ATACGGCCGGTCAAGGGAAT 61.343 55.000 31.76 6.43 0.00 3.01
38 39 1.555477 AATACGGCCGGTCAAGGGAA 61.555 55.000 31.76 2.97 0.00 3.97
39 40 1.555477 AAATACGGCCGGTCAAGGGA 61.555 55.000 31.76 3.87 0.00 4.20
40 41 1.078001 AAATACGGCCGGTCAAGGG 60.078 57.895 31.76 0.00 0.00 3.95
41 42 0.391927 TGAAATACGGCCGGTCAAGG 60.392 55.000 31.76 0.00 0.00 3.61
42 43 1.006832 CTGAAATACGGCCGGTCAAG 58.993 55.000 31.76 14.80 0.00 3.02
43 44 0.322322 ACTGAAATACGGCCGGTCAA 59.678 50.000 31.76 12.38 0.00 3.18
44 45 1.135527 CTACTGAAATACGGCCGGTCA 59.864 52.381 31.76 23.58 0.00 4.02
45 46 1.406539 TCTACTGAAATACGGCCGGTC 59.593 52.381 31.76 20.32 0.00 4.79
46 47 1.407979 CTCTACTGAAATACGGCCGGT 59.592 52.381 31.76 17.91 0.00 5.28
47 48 1.407979 ACTCTACTGAAATACGGCCGG 59.592 52.381 31.76 12.27 0.00 6.13
48 49 2.865343 ACTCTACTGAAATACGGCCG 57.135 50.000 26.86 26.86 0.00 6.13
49 50 3.550678 CGAAACTCTACTGAAATACGGCC 59.449 47.826 0.00 0.00 0.00 6.13
50 51 3.550678 CCGAAACTCTACTGAAATACGGC 59.449 47.826 0.00 0.00 0.00 5.68
51 52 3.550678 GCCGAAACTCTACTGAAATACGG 59.449 47.826 0.00 0.00 39.64 4.02
52 53 3.550678 GGCCGAAACTCTACTGAAATACG 59.449 47.826 0.00 0.00 0.00 3.06
53 54 3.869832 GGGCCGAAACTCTACTGAAATAC 59.130 47.826 0.00 0.00 0.00 1.89
54 55 3.516300 TGGGCCGAAACTCTACTGAAATA 59.484 43.478 0.00 0.00 0.00 1.40
55 56 2.304761 TGGGCCGAAACTCTACTGAAAT 59.695 45.455 0.00 0.00 0.00 2.17
56 57 1.695242 TGGGCCGAAACTCTACTGAAA 59.305 47.619 0.00 0.00 0.00 2.69
57 58 1.275291 CTGGGCCGAAACTCTACTGAA 59.725 52.381 0.00 0.00 0.00 3.02
58 59 0.895530 CTGGGCCGAAACTCTACTGA 59.104 55.000 0.00 0.00 0.00 3.41
59 60 0.895530 TCTGGGCCGAAACTCTACTG 59.104 55.000 0.00 0.00 0.00 2.74
60 61 1.187087 CTCTGGGCCGAAACTCTACT 58.813 55.000 0.00 0.00 0.00 2.57
61 62 0.460459 GCTCTGGGCCGAAACTCTAC 60.460 60.000 0.00 0.00 34.27 2.59
62 63 0.614979 AGCTCTGGGCCGAAACTCTA 60.615 55.000 0.00 0.00 43.05 2.43
88 89 2.666508 GTCAAGCACATACGTGACGAAT 59.333 45.455 13.70 0.00 46.80 3.34
109 110 1.642037 TACTCCGTCGGACAAGCTCG 61.642 60.000 10.71 0.95 0.00 5.03
155 156 6.307558 CAGAGATACTGCATACACGAATGATC 59.692 42.308 0.00 0.00 39.86 2.92
174 175 1.554160 CCCAGTGCAGAGAACAGAGAT 59.446 52.381 0.00 0.00 0.00 2.75
184 185 1.367471 CGAGACAACCCAGTGCAGA 59.633 57.895 0.00 0.00 0.00 4.26
199 200 3.752731 CGTCTGATATATGACCTGCGAG 58.247 50.000 0.00 0.00 0.00 5.03
201 202 2.254459 GCGTCTGATATATGACCTGCG 58.746 52.381 0.00 0.00 0.00 5.18
224 225 1.995484 CGTGACAAGATCTGCAATCGT 59.005 47.619 0.00 0.00 0.00 3.73
225 226 1.325640 CCGTGACAAGATCTGCAATCG 59.674 52.381 0.00 0.00 0.00 3.34
229 230 2.495669 TGATACCGTGACAAGATCTGCA 59.504 45.455 0.00 0.00 0.00 4.41
242 243 3.123804 CAAGAGCGCTAAATGATACCGT 58.876 45.455 11.50 0.00 0.00 4.83
243 244 3.381045 TCAAGAGCGCTAAATGATACCG 58.619 45.455 11.50 0.00 0.00 4.02
257 258 8.175069 TGTATCGTAAATCAACATTTCAAGAGC 58.825 33.333 0.00 0.00 33.95 4.09
265 266 9.698309 CCTCTCTATGTATCGTAAATCAACATT 57.302 33.333 0.00 0.00 33.15 2.71
266 267 8.861086 ACCTCTCTATGTATCGTAAATCAACAT 58.139 33.333 0.00 0.00 35.16 2.71
276 277 6.054295 ACGAGTTAACCTCTCTATGTATCGT 58.946 40.000 0.88 3.78 38.11 3.73
278 279 7.661027 ACCTACGAGTTAACCTCTCTATGTATC 59.339 40.741 0.88 0.00 38.11 2.24
281 282 5.589452 CACCTACGAGTTAACCTCTCTATGT 59.411 44.000 0.88 0.00 38.11 2.29
287 288 2.492484 CAGCACCTACGAGTTAACCTCT 59.508 50.000 0.88 0.00 38.11 3.69
292 293 5.458041 AAAGTACAGCACCTACGAGTTAA 57.542 39.130 0.00 0.00 0.00 2.01
316 317 7.212274 AGAAGTACTTAAAGCCAACGAGTAAA 58.788 34.615 8.42 0.00 0.00 2.01
322 323 7.591006 TCAATAGAAGTACTTAAAGCCAACG 57.409 36.000 8.42 0.00 0.00 4.10
343 344 5.968167 ACATAAGTATACCCCAGGACTTCAA 59.032 40.000 0.00 0.00 34.15 2.69
352 353 7.165495 TGTAGGAGTACATAAGTATACCCCA 57.835 40.000 0.00 0.00 34.02 4.96
370 371 2.290896 CCTGAGCCCAACAAATGTAGGA 60.291 50.000 6.70 0.00 0.00 2.94
371 372 2.094675 CCTGAGCCCAACAAATGTAGG 58.905 52.381 0.00 0.00 0.00 3.18
372 373 1.474077 GCCTGAGCCCAACAAATGTAG 59.526 52.381 0.00 0.00 0.00 2.74
374 375 0.178953 AGCCTGAGCCCAACAAATGT 60.179 50.000 0.00 0.00 41.25 2.71
427 428 1.270465 GGCAGCATTTTGAACAAGGCT 60.270 47.619 0.00 0.00 0.00 4.58
438 439 0.688487 AAGTGGCAATGGCAGCATTT 59.312 45.000 10.55 0.00 43.71 2.32
441 442 0.249953 CAAAAGTGGCAATGGCAGCA 60.250 50.000 10.55 0.00 43.71 4.41
443 444 0.249953 TGCAAAAGTGGCAATGGCAG 60.250 50.000 10.55 0.00 43.71 4.85
474 692 4.143333 CAGGTACGGCGAGTGGGG 62.143 72.222 16.62 0.00 0.00 4.96
482 700 3.291101 TTGCTCGGTCAGGTACGGC 62.291 63.158 0.00 0.00 0.00 5.68
484 702 0.319211 TTGTTGCTCGGTCAGGTACG 60.319 55.000 0.00 0.00 0.00 3.67
523 741 1.286880 CGTCGAACCTAACACCGGT 59.713 57.895 0.00 0.00 35.97 5.28
542 760 3.735514 GCAGAAGCGGTTCTAAGTCCTAG 60.736 52.174 27.89 14.75 41.40 3.02
555 773 0.886490 AACAGGTCTTGCAGAAGCGG 60.886 55.000 0.00 0.00 46.23 5.52
578 796 2.878406 CCAACTAACACTGGTCCAGTTG 59.122 50.000 22.52 18.43 42.59 3.16
591 809 2.067013 GAGAACCAGACGCCAACTAAC 58.933 52.381 0.00 0.00 0.00 2.34
600 818 3.386768 TTTGGAGAAGAGAACCAGACG 57.613 47.619 0.00 0.00 35.08 4.18
610 828 6.209774 TGGGGTATCTCTATTTTGGAGAAGA 58.790 40.000 0.00 0.00 42.16 2.87
614 832 4.907875 TCCTGGGGTATCTCTATTTTGGAG 59.092 45.833 0.00 0.00 0.00 3.86
644 868 6.759497 ATGGAGAGGTAAATAAAACTGTGC 57.241 37.500 0.00 0.00 0.00 4.57
689 914 8.208718 TGGCAAGTCAATGTAATAAGACATAC 57.791 34.615 0.00 0.00 39.16 2.39
690 915 8.046708 ACTGGCAAGTCAATGTAATAAGACATA 58.953 33.333 0.00 0.00 33.12 2.29
691 916 6.886459 ACTGGCAAGTCAATGTAATAAGACAT 59.114 34.615 0.00 0.00 34.88 3.06
692 917 6.237901 ACTGGCAAGTCAATGTAATAAGACA 58.762 36.000 0.00 0.00 34.90 3.41
693 918 6.743575 ACTGGCAAGTCAATGTAATAAGAC 57.256 37.500 0.00 0.00 33.27 3.01
694 919 7.620880 AGTACTGGCAAGTCAATGTAATAAGA 58.379 34.615 0.00 0.00 37.88 2.10
695 920 7.849804 AGTACTGGCAAGTCAATGTAATAAG 57.150 36.000 0.00 0.00 37.88 1.73
696 921 9.899661 ATAAGTACTGGCAAGTCAATGTAATAA 57.100 29.630 0.00 0.00 37.88 1.40
697 922 9.899661 AATAAGTACTGGCAAGTCAATGTAATA 57.100 29.630 0.00 0.00 37.88 0.98
698 923 8.807948 AATAAGTACTGGCAAGTCAATGTAAT 57.192 30.769 0.00 0.00 37.88 1.89
699 924 8.630054 AAATAAGTACTGGCAAGTCAATGTAA 57.370 30.769 0.00 0.00 37.88 2.41
700 925 9.899661 ATAAATAAGTACTGGCAAGTCAATGTA 57.100 29.630 0.00 0.00 37.88 2.29
701 926 8.677300 CATAAATAAGTACTGGCAAGTCAATGT 58.323 33.333 0.00 0.00 37.88 2.71
702 927 8.677300 ACATAAATAAGTACTGGCAAGTCAATG 58.323 33.333 0.00 0.00 37.88 2.82
703 928 8.807948 ACATAAATAAGTACTGGCAAGTCAAT 57.192 30.769 0.00 0.00 37.88 2.57
704 929 9.727859 TTACATAAATAAGTACTGGCAAGTCAA 57.272 29.630 0.00 0.00 37.88 3.18
705 930 9.378551 CTTACATAAATAAGTACTGGCAAGTCA 57.621 33.333 0.00 0.00 37.88 3.41
706 931 8.336080 GCTTACATAAATAAGTACTGGCAAGTC 58.664 37.037 0.00 0.00 34.21 3.01
707 932 7.827236 TGCTTACATAAATAAGTACTGGCAAGT 59.173 33.333 0.00 0.00 35.39 3.16
708 933 8.208718 TGCTTACATAAATAAGTACTGGCAAG 57.791 34.615 0.00 0.00 35.05 4.01
709 934 8.746052 ATGCTTACATAAATAAGTACTGGCAA 57.254 30.769 0.00 0.00 35.05 4.52
710 935 8.210946 AGATGCTTACATAAATAAGTACTGGCA 58.789 33.333 0.00 0.00 36.35 4.92
711 936 8.608844 AGATGCTTACATAAATAAGTACTGGC 57.391 34.615 0.00 0.00 36.35 4.85
722 947 8.450964 GCAGTACAAAGAAGATGCTTACATAAA 58.549 33.333 0.00 0.00 36.35 1.40
723 948 7.824289 AGCAGTACAAAGAAGATGCTTACATAA 59.176 33.333 0.00 0.00 40.95 1.90
724 949 7.331026 AGCAGTACAAAGAAGATGCTTACATA 58.669 34.615 0.00 0.00 40.95 2.29
725 950 6.176183 AGCAGTACAAAGAAGATGCTTACAT 58.824 36.000 0.00 0.00 40.95 2.29
726 951 5.551233 AGCAGTACAAAGAAGATGCTTACA 58.449 37.500 0.00 0.00 40.95 2.41
727 952 6.590292 TGTAGCAGTACAAAGAAGATGCTTAC 59.410 38.462 7.21 5.28 40.95 2.34
728 953 6.697395 TGTAGCAGTACAAAGAAGATGCTTA 58.303 36.000 7.21 0.00 40.95 3.09
729 954 5.551233 TGTAGCAGTACAAAGAAGATGCTT 58.449 37.500 7.21 0.00 40.95 3.91
730 955 5.152623 TGTAGCAGTACAAAGAAGATGCT 57.847 39.130 7.10 7.10 45.35 3.79
731 956 6.428385 AATGTAGCAGTACAAAGAAGATGC 57.572 37.500 0.00 0.00 42.54 3.91
732 957 8.554528 CCATAATGTAGCAGTACAAAGAAGATG 58.445 37.037 0.00 0.00 42.54 2.90
733 958 8.267894 ACCATAATGTAGCAGTACAAAGAAGAT 58.732 33.333 0.00 0.00 42.54 2.40
734 959 7.620880 ACCATAATGTAGCAGTACAAAGAAGA 58.379 34.615 0.00 0.00 42.54 2.87
735 960 7.849804 ACCATAATGTAGCAGTACAAAGAAG 57.150 36.000 0.00 0.00 42.54 2.85
736 961 7.880713 TCAACCATAATGTAGCAGTACAAAGAA 59.119 33.333 0.00 0.00 42.54 2.52
737 962 7.390823 TCAACCATAATGTAGCAGTACAAAGA 58.609 34.615 0.00 0.00 42.54 2.52
738 963 7.609760 TCAACCATAATGTAGCAGTACAAAG 57.390 36.000 0.00 0.00 42.54 2.77
739 964 7.987750 TTCAACCATAATGTAGCAGTACAAA 57.012 32.000 0.00 0.00 42.54 2.83
740 965 7.987750 TTTCAACCATAATGTAGCAGTACAA 57.012 32.000 0.00 0.00 42.54 2.41
741 966 8.574251 AATTTCAACCATAATGTAGCAGTACA 57.426 30.769 0.00 0.00 43.43 2.90
742 967 9.855021 AAAATTTCAACCATAATGTAGCAGTAC 57.145 29.630 0.00 0.00 0.00 2.73
743 968 9.853555 CAAAATTTCAACCATAATGTAGCAGTA 57.146 29.630 0.00 0.00 0.00 2.74
744 969 8.367156 ACAAAATTTCAACCATAATGTAGCAGT 58.633 29.630 0.00 0.00 0.00 4.40
745 970 8.649841 CACAAAATTTCAACCATAATGTAGCAG 58.350 33.333 0.00 0.00 0.00 4.24
746 971 8.147058 ACACAAAATTTCAACCATAATGTAGCA 58.853 29.630 0.00 0.00 0.00 3.49
747 972 8.532977 ACACAAAATTTCAACCATAATGTAGC 57.467 30.769 0.00 0.00 0.00 3.58
750 975 9.995003 ACATACACAAAATTTCAACCATAATGT 57.005 25.926 0.00 0.00 0.00 2.71
765 990 9.733556 AGTCCATGTAATAAGACATACACAAAA 57.266 29.630 0.00 0.00 37.99 2.44
766 991 9.733556 AAGTCCATGTAATAAGACATACACAAA 57.266 29.630 0.00 0.00 37.99 2.83
767 992 9.378551 GAAGTCCATGTAATAAGACATACACAA 57.621 33.333 0.00 0.00 37.99 3.33
768 993 7.985184 GGAAGTCCATGTAATAAGACATACACA 59.015 37.037 0.00 0.00 37.99 3.72
769 994 7.441458 GGGAAGTCCATGTAATAAGACATACAC 59.559 40.741 0.00 0.00 37.99 2.90
770 995 7.126573 TGGGAAGTCCATGTAATAAGACATACA 59.873 37.037 0.00 0.00 41.46 2.29
771 996 7.506114 TGGGAAGTCCATGTAATAAGACATAC 58.494 38.462 0.00 0.00 41.46 2.39
772 997 7.347222 ACTGGGAAGTCCATGTAATAAGACATA 59.653 37.037 0.00 0.00 46.01 2.29
787 1012 5.557866 ACATAAACAAGTACTGGGAAGTCC 58.442 41.667 1.45 0.00 0.00 3.85
813 1038 6.428385 AATGTAGCAGTACAAAGAAGATGC 57.572 37.500 0.00 0.00 42.54 3.91
817 1042 7.849804 ACCATAATGTAGCAGTACAAAGAAG 57.150 36.000 0.00 0.00 42.54 2.85
870 1096 9.364989 ACACAAATTGGGAATAAATATGAAACG 57.635 29.630 0.65 0.00 0.00 3.60
877 1103 7.566879 AGGGCATACACAAATTGGGAATAAATA 59.433 33.333 0.65 0.00 0.00 1.40
882 1108 3.723325 AGGGCATACACAAATTGGGAAT 58.277 40.909 0.65 0.00 0.00 3.01
885 1111 2.566724 ACAAGGGCATACACAAATTGGG 59.433 45.455 0.00 0.00 0.00 4.12
895 1121 2.223805 GCCATAAAGCACAAGGGCATAC 60.224 50.000 0.00 0.00 41.02 2.39
904 1130 4.220382 ACAAATTAGCAGCCATAAAGCACA 59.780 37.500 0.00 0.00 34.23 4.57
908 1136 5.922544 GCCATACAAATTAGCAGCCATAAAG 59.077 40.000 0.00 0.00 0.00 1.85
915 1143 3.558505 CGATGCCATACAAATTAGCAGC 58.441 45.455 0.00 0.00 36.80 5.25
918 1146 3.146066 TCCCGATGCCATACAAATTAGC 58.854 45.455 0.00 0.00 0.00 3.09
926 1154 7.047891 TCAGATAATTTATCCCGATGCCATAC 58.952 38.462 11.89 0.00 35.79 2.39
927 1155 7.194112 TCAGATAATTTATCCCGATGCCATA 57.806 36.000 11.89 0.00 35.79 2.74
954 1182 7.430760 ACAAGCTACAAGGAGATAGATTTCT 57.569 36.000 0.00 0.00 0.00 2.52
966 1194 3.119708 GGATGCTCAAACAAGCTACAAGG 60.120 47.826 0.00 0.00 42.94 3.61
998 1226 3.234353 TCAGATGGCTTCTCCGACATAT 58.766 45.455 0.00 0.00 37.80 1.78
1023 1251 2.567049 CTCACCTGACCGGTCGTC 59.433 66.667 28.70 7.52 44.93 4.20
1081 1309 6.238869 GGCATCTCATTTCCTTTATTCTGGTC 60.239 42.308 0.00 0.00 0.00 4.02
1087 1315 6.239232 GCTGATGGCATCTCATTTCCTTTATT 60.239 38.462 26.49 0.00 41.35 1.40
1119 1347 7.787725 ATCGTTAACAAAAGATGATACCTCC 57.212 36.000 6.39 0.00 0.00 4.30
1141 1369 5.572896 GCACACAAGGTTAAGCATTACAATC 59.427 40.000 7.52 0.00 0.00 2.67
1143 1371 4.582656 AGCACACAAGGTTAAGCATTACAA 59.417 37.500 7.52 0.00 0.00 2.41
1341 1569 1.611977 GGTGACTTTTTGGGCAGTACC 59.388 52.381 0.00 0.00 37.93 3.34
1459 1687 8.945195 AATGGATATGGAGCTAAAATTGATCA 57.055 30.769 0.00 0.00 0.00 2.92
1494 1722 6.315144 TCATGGTCCTGATACATTTTAACACG 59.685 38.462 0.00 0.00 0.00 4.49
1587 1818 4.020039 TGCATTGCTTCCTCAAAATCCATT 60.020 37.500 10.49 0.00 0.00 3.16
1638 1869 1.136695 CTTGCTGCAGGAAACCAAACA 59.863 47.619 21.68 1.32 0.00 2.83
1684 1915 1.667830 TCGAAGTGCTTCAAGCGGG 60.668 57.895 4.57 0.00 46.26 6.13
1727 1958 5.045215 CACATTCTTGCAAACAATGAGTGT 58.955 37.500 26.47 17.90 44.64 3.55
1800 2031 7.201644 GCAAATACACTAATGAAAGAGCTAGCA 60.202 37.037 18.83 0.00 0.00 3.49
1902 2134 0.178873 AACAGAACTAGGGGGCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
1921 2153 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1922 2154 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1923 2155 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1924 2156 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1925 2157 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1926 2158 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1943 2175 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
1944 2176 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
1945 2177 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
1952 2184 9.470399 TGTATGTAGTTTGTAGTGGAATCTCTA 57.530 33.333 0.00 0.00 0.00 2.43
1953 2185 8.362464 TGTATGTAGTTTGTAGTGGAATCTCT 57.638 34.615 0.00 0.00 0.00 3.10
1954 2186 8.467598 TCTGTATGTAGTTTGTAGTGGAATCTC 58.532 37.037 0.00 0.00 0.00 2.75
1955 2187 8.362464 TCTGTATGTAGTTTGTAGTGGAATCT 57.638 34.615 0.00 0.00 0.00 2.40
1956 2188 9.035607 CATCTGTATGTAGTTTGTAGTGGAATC 57.964 37.037 0.00 0.00 0.00 2.52
1957 2189 8.540388 ACATCTGTATGTAGTTTGTAGTGGAAT 58.460 33.333 0.00 0.00 44.66 3.01
1958 2190 7.903145 ACATCTGTATGTAGTTTGTAGTGGAA 58.097 34.615 0.00 0.00 44.66 3.53
1959 2191 7.476540 ACATCTGTATGTAGTTTGTAGTGGA 57.523 36.000 0.00 0.00 44.66 4.02
2002 2234 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2003 2235 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2004 2236 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2005 2237 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2006 2238 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2007 2239 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2008 2240 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2009 2241 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2010 2242 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2011 2243 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2012 2244 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2013 2245 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2014 2246 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2015 2247 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2016 2248 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2017 2249 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2018 2250 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
2019 2251 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
2020 2252 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
2021 2253 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
2022 2254 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
2023 2255 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
2034 2266 8.380742 AGTCTTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
2051 2283 9.434275 CCCCCATTCCTAAATATAAGTCTTTTT 57.566 33.333 0.00 0.00 0.00 1.94
2074 2306 4.505324 AGCAAAGAATTACTACTCCCCC 57.495 45.455 0.00 0.00 0.00 5.40
2075 2307 5.123979 CACAAGCAAAGAATTACTACTCCCC 59.876 44.000 0.00 0.00 0.00 4.81
2076 2308 5.123979 CCACAAGCAAAGAATTACTACTCCC 59.876 44.000 0.00 0.00 0.00 4.30
2077 2309 5.938125 TCCACAAGCAAAGAATTACTACTCC 59.062 40.000 0.00 0.00 0.00 3.85
2078 2310 7.066374 CTCCACAAGCAAAGAATTACTACTC 57.934 40.000 0.00 0.00 0.00 2.59
2111 2343 2.092323 AGTGTAGCACGTCTGATAGCA 58.908 47.619 0.00 0.00 39.64 3.49
2124 2356 8.460428 AGAAAGTATCAACAGTAGTAGTGTAGC 58.540 37.037 11.05 1.30 30.24 3.58
2496 2730 1.541147 TGTACTGGATTGCTTGCTTGC 59.459 47.619 0.00 0.00 0.00 4.01
2612 2846 3.003173 CCTTGGCCTCCTCGGTGA 61.003 66.667 3.32 0.00 34.25 4.02
2631 2883 0.984230 TGGATTCCTTGTTCTCGGCT 59.016 50.000 3.95 0.00 0.00 5.52
2698 2950 3.329542 AACGAGACGGCATGGGCAT 62.330 57.895 0.00 0.00 43.71 4.40
2699 2951 4.015406 AACGAGACGGCATGGGCA 62.015 61.111 0.00 0.00 43.71 5.36
2731 2983 2.824880 TTACAGGGCGCCCACAGTT 61.825 57.895 45.13 24.03 38.92 3.16
2733 2985 2.746277 GTTACAGGGCGCCCACAG 60.746 66.667 45.13 34.33 38.92 3.66
2742 2994 2.501223 TTCAGCGAGCGGTTACAGGG 62.501 60.000 0.00 0.00 0.00 4.45
2744 2996 1.359848 AATTCAGCGAGCGGTTACAG 58.640 50.000 0.00 0.00 0.00 2.74
2751 3003 2.096268 TCAGTTCAAAATTCAGCGAGCG 60.096 45.455 0.00 0.00 0.00 5.03
2752 3004 3.542712 TCAGTTCAAAATTCAGCGAGC 57.457 42.857 0.00 0.00 0.00 5.03
2755 3007 4.601019 ACACTTCAGTTCAAAATTCAGCG 58.399 39.130 0.00 0.00 0.00 5.18
2856 3108 2.100749 ACTCGGTGCGACATCATAATGA 59.899 45.455 0.00 0.00 36.67 2.57
2925 3188 4.056050 GGTTCGACATTCAACACAGTACT 58.944 43.478 0.00 0.00 0.00 2.73
2985 3288 5.682943 TTCCACAGAATTCAAACGGTAAG 57.317 39.130 8.44 0.00 0.00 2.34
3026 3329 3.864583 CACCAACACACCAAACAGAATTG 59.135 43.478 0.00 0.00 0.00 2.32
3120 3426 5.288015 TGTCATAAGTTCGAACCGTGTTTA 58.712 37.500 24.22 15.57 0.00 2.01
3126 3432 5.779806 AATCTTGTCATAAGTTCGAACCG 57.220 39.130 24.22 10.96 0.00 4.44
3130 3436 8.520351 TCTTCAGTAATCTTGTCATAAGTTCGA 58.480 33.333 0.00 0.00 0.00 3.71
3140 3446 7.384387 AGGTAAACGTTCTTCAGTAATCTTGTC 59.616 37.037 0.00 0.00 0.00 3.18
3148 3456 7.384115 CAGATTTGAGGTAAACGTTCTTCAGTA 59.616 37.037 0.00 0.00 0.00 2.74
3153 3461 6.937436 AACAGATTTGAGGTAAACGTTCTT 57.063 33.333 0.00 0.00 0.00 2.52
3180 3524 8.438676 TGTTCTTTTCAAACCAAACAGAAAAA 57.561 26.923 0.00 0.00 38.88 1.94
3191 3535 4.864704 TGGGCTATGTTCTTTTCAAACC 57.135 40.909 0.00 0.00 0.00 3.27
3192 3536 4.679654 CGTTGGGCTATGTTCTTTTCAAAC 59.320 41.667 0.00 0.00 0.00 2.93
3193 3537 4.339814 ACGTTGGGCTATGTTCTTTTCAAA 59.660 37.500 0.00 0.00 0.00 2.69
3211 3555 7.740519 AAAAGAAACAAATCTCTCAACGTTG 57.259 32.000 22.35 22.35 0.00 4.10
3280 3628 8.765488 ACTCAATATTCTTCTCTCAGATCTCA 57.235 34.615 0.00 0.00 0.00 3.27
3290 3638 9.988350 GATATCTCTCGACTCAATATTCTTCTC 57.012 37.037 0.00 0.00 0.00 2.87
3292 3640 9.773328 CAGATATCTCTCGACTCAATATTCTTC 57.227 37.037 1.03 0.00 0.00 2.87
3295 3643 9.935682 GATCAGATATCTCTCGACTCAATATTC 57.064 37.037 1.03 0.00 0.00 1.75
3341 3689 9.059260 GCCCGTTAAATAAGTGGAATATTTCTA 57.941 33.333 0.00 0.00 35.28 2.10
3357 3705 0.179029 CCGATCCTGGCCCGTTAAAT 60.179 55.000 0.00 0.00 0.00 1.40
3369 3717 2.885861 GTGTCAGCGTCCGATCCT 59.114 61.111 0.00 0.00 0.00 3.24
3381 3729 0.673985 CTCCTTGGACTCACGTGTCA 59.326 55.000 16.51 7.43 38.61 3.58
3386 3734 0.946221 GTGTGCTCCTTGGACTCACG 60.946 60.000 10.59 0.00 37.91 4.35
3388 3736 1.367471 CGTGTGCTCCTTGGACTCA 59.633 57.895 0.00 0.00 37.91 3.41
3430 3778 3.309296 TGATACTTCCAAGGGCCTCTAG 58.691 50.000 6.46 4.51 0.00 2.43
3515 3866 0.683179 GATGGGTTAGGGTTGGGTGC 60.683 60.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.