Multiple sequence alignment - TraesCS1A01G401900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G401900 chr1A 100.000 4365 0 0 1 4365 565423877 565419513 0.000000e+00 8061.0
1 TraesCS1A01G401900 chr1D 96.753 1694 52 1 1270 2960 471134953 471133260 0.000000e+00 2820.0
2 TraesCS1A01G401900 chr1D 88.042 669 69 7 1 666 461901019 461900359 0.000000e+00 782.0
3 TraesCS1A01G401900 chr1D 88.976 508 26 7 747 1233 471135775 471135277 6.250000e-168 601.0
4 TraesCS1A01G401900 chr1D 88.750 400 42 3 3901 4298 471132318 471131920 1.820000e-133 486.0
5 TraesCS1A01G401900 chr1D 93.143 175 12 0 3008 3182 471133242 471133068 1.560000e-64 257.0
6 TraesCS1A01G401900 chr1D 85.022 227 25 4 3225 3442 471133065 471132839 5.680000e-54 222.0
7 TraesCS1A01G401900 chr1D 90.580 138 10 3 3448 3584 471132645 471132510 3.470000e-41 180.0
8 TraesCS1A01G401900 chr1D 83.163 196 26 4 3692 3885 471132497 471132307 5.800000e-39 172.0
9 TraesCS1A01G401900 chr1D 100.000 28 0 0 2541 2568 483143405 483143432 8.000000e-03 52.8
10 TraesCS1A01G401900 chr1B 95.712 1749 54 9 1224 2960 654861608 654859869 0.000000e+00 2795.0
11 TraesCS1A01G401900 chr1B 87.444 669 75 7 1 666 6250244 6249582 0.000000e+00 761.0
12 TraesCS1A01G401900 chr1B 89.922 387 30 4 3080 3457 654859796 654859410 1.410000e-134 490.0
13 TraesCS1A01G401900 chr1B 86.207 348 39 5 3234 3578 654854694 654854353 6.900000e-98 368.0
14 TraesCS1A01G401900 chr1B 92.083 240 18 1 3023 3262 654835868 654835630 1.940000e-88 337.0
15 TraesCS1A01G401900 chr1B 83.805 389 20 23 811 1184 654862262 654861902 3.250000e-86 329.0
16 TraesCS1A01G401900 chr1B 90.533 169 12 2 2795 2960 654855132 654854965 2.040000e-53 220.0
17 TraesCS1A01G401900 chr1B 91.447 152 12 1 3082 3233 654854929 654854779 1.590000e-49 207.0
18 TraesCS1A01G401900 chr2B 87.838 666 72 7 4 666 543196769 543196110 0.000000e+00 773.0
19 TraesCS1A01G401900 chr2B 87.444 669 73 7 1 666 202911450 202910790 0.000000e+00 760.0
20 TraesCS1A01G401900 chr2B 89.691 97 10 0 3594 3690 672093997 672093901 1.650000e-24 124.0
21 TraesCS1A01G401900 chr2B 89.000 100 8 3 3592 3691 318258961 318259057 2.130000e-23 121.0
22 TraesCS1A01G401900 chr7B 87.612 670 71 10 1 666 191893452 191892791 0.000000e+00 767.0
23 TraesCS1A01G401900 chr7B 89.691 97 10 0 3594 3690 198951327 198951423 1.650000e-24 124.0
24 TraesCS1A01G401900 chr7B 97.436 39 1 0 2543 2581 141864724 141864686 2.820000e-07 67.6
25 TraesCS1A01G401900 chr3B 87.500 672 71 10 1 667 780864835 780864172 0.000000e+00 763.0
26 TraesCS1A01G401900 chr3B 87.313 670 74 9 1 666 621475452 621476114 0.000000e+00 756.0
27 TraesCS1A01G401900 chr3B 87.294 669 76 7 1 666 824304945 824304283 0.000000e+00 756.0
28 TraesCS1A01G401900 chr3B 87.129 101 13 0 3593 3693 820339635 820339535 9.920000e-22 115.0
29 TraesCS1A01G401900 chr3B 84.545 110 17 0 3594 3703 341179055 341178946 4.620000e-20 110.0
30 TraesCS1A01G401900 chr3B 100.000 32 0 0 2550 2581 679646138 679646107 4.710000e-05 60.2
31 TraesCS1A01G401900 chr2D 87.294 669 76 7 1 666 600313075 600313737 0.000000e+00 756.0
32 TraesCS1A01G401900 chr4B 88.235 102 8 3 3593 3692 634592895 634592994 7.670000e-23 119.0
33 TraesCS1A01G401900 chrUn 87.879 99 12 0 3604 3702 89396853 89396755 2.760000e-22 117.0
34 TraesCS1A01G401900 chr6B 86.111 108 13 2 3587 3694 9353362 9353467 9.920000e-22 115.0
35 TraesCS1A01G401900 chr5D 87.379 103 9 3 3591 3691 34876229 34876329 9.920000e-22 115.0
36 TraesCS1A01G401900 chr5D 94.444 36 2 0 2546 2581 319145914 319145879 6.100000e-04 56.5
37 TraesCS1A01G401900 chr3D 100.000 32 0 0 2550 2581 516385272 516385241 4.710000e-05 60.2
38 TraesCS1A01G401900 chr3A 100.000 32 0 0 2550 2581 651588229 651588198 4.710000e-05 60.2
39 TraesCS1A01G401900 chr5B 94.444 36 2 0 2546 2581 369262323 369262288 6.100000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G401900 chr1A 565419513 565423877 4364 True 8061.000000 8061 100.000000 1 4365 1 chr1A.!!$R1 4364
1 TraesCS1A01G401900 chr1D 461900359 461901019 660 True 782.000000 782 88.042000 1 666 1 chr1D.!!$R1 665
2 TraesCS1A01G401900 chr1D 471131920 471135775 3855 True 676.857143 2820 89.483857 747 4298 7 chr1D.!!$R2 3551
3 TraesCS1A01G401900 chr1B 654859410 654862262 2852 True 1204.666667 2795 89.813000 811 3457 3 chr1B.!!$R4 2646
4 TraesCS1A01G401900 chr1B 6249582 6250244 662 True 761.000000 761 87.444000 1 666 1 chr1B.!!$R1 665
5 TraesCS1A01G401900 chr1B 654854353 654855132 779 True 265.000000 368 89.395667 2795 3578 3 chr1B.!!$R3 783
6 TraesCS1A01G401900 chr2B 543196110 543196769 659 True 773.000000 773 87.838000 4 666 1 chr2B.!!$R2 662
7 TraesCS1A01G401900 chr2B 202910790 202911450 660 True 760.000000 760 87.444000 1 666 1 chr2B.!!$R1 665
8 TraesCS1A01G401900 chr7B 191892791 191893452 661 True 767.000000 767 87.612000 1 666 1 chr7B.!!$R2 665
9 TraesCS1A01G401900 chr3B 780864172 780864835 663 True 763.000000 763 87.500000 1 667 1 chr3B.!!$R3 666
10 TraesCS1A01G401900 chr3B 621475452 621476114 662 False 756.000000 756 87.313000 1 666 1 chr3B.!!$F1 665
11 TraesCS1A01G401900 chr3B 824304283 824304945 662 True 756.000000 756 87.294000 1 666 1 chr3B.!!$R5 665
12 TraesCS1A01G401900 chr2D 600313075 600313737 662 False 756.000000 756 87.294000 1 666 1 chr2D.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 693 0.107459 GCTCCGAAAGATTGGCCTCT 60.107 55.000 3.32 0.0 0.00 3.69 F
1262 1555 0.179134 CCGCCACAGCAGTAGTACTC 60.179 60.000 0.00 0.0 39.83 2.59 F
2009 2598 1.003580 TGGATGAAGGTGAAGCAGGAC 59.996 52.381 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 2961 1.198713 GGAAGCTCATGTCCTCCAGA 58.801 55.000 0.00 0.0 0.00 3.86 R
2971 3563 1.065199 TGCAAGAGCTCAAGTATGGGG 60.065 52.381 17.77 0.0 42.74 4.96 R
3846 4720 0.038251 AACTTCTCGCACGCATGAGA 60.038 50.000 2.50 0.0 39.38 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.697352 AGAAAAGAATGACGGATCACCTTG 59.303 41.667 0.00 0.00 37.79 3.61
81 82 1.125093 ACGGATCACCTTGTCACCCA 61.125 55.000 0.00 0.00 0.00 4.51
150 151 6.332630 CAAGTTGACTCACCAAAAATGAAGT 58.667 36.000 0.00 0.00 0.00 3.01
171 172 7.606073 TGAAGTCCTTATCGTTGAATGAATCAA 59.394 33.333 0.00 0.00 45.71 2.57
181 182 2.487762 TGAATGAATCAAACCGGAGCAC 59.512 45.455 9.46 0.00 34.30 4.40
182 183 2.198827 ATGAATCAAACCGGAGCACA 57.801 45.000 9.46 0.00 0.00 4.57
183 184 2.198827 TGAATCAAACCGGAGCACAT 57.801 45.000 9.46 0.00 0.00 3.21
184 185 3.342377 TGAATCAAACCGGAGCACATA 57.658 42.857 9.46 0.00 0.00 2.29
186 187 2.779755 ATCAAACCGGAGCACATACA 57.220 45.000 9.46 0.00 0.00 2.29
187 188 2.779755 TCAAACCGGAGCACATACAT 57.220 45.000 9.46 0.00 0.00 2.29
212 213 0.537188 ACGCCATCGAACTCCAGATT 59.463 50.000 0.00 0.00 39.41 2.40
262 264 3.852578 AGGAGGAAACCATACCTGTCATT 59.147 43.478 0.00 0.00 36.57 2.57
263 265 4.292306 AGGAGGAAACCATACCTGTCATTT 59.708 41.667 0.00 0.00 36.57 2.32
274 276 2.217750 CCTGTCATTTCACGAACCACA 58.782 47.619 0.00 0.00 0.00 4.17
297 299 1.604693 CCTAGCACACGTTCCGTCTTT 60.605 52.381 0.00 0.00 38.32 2.52
305 307 2.155732 CACGTTCCGTCTTTCAGATGTG 59.844 50.000 0.00 0.00 38.32 3.21
315 317 1.725641 TTCAGATGTGGTCGATGCAC 58.274 50.000 0.00 0.00 0.00 4.57
353 355 0.193574 TCCTGGACTTCCTCCCAAGT 59.806 55.000 0.00 0.00 38.49 3.16
371 373 2.798364 TTCCACGCCGACACTGGAA 61.798 57.895 3.08 3.08 40.97 3.53
426 428 1.609239 GTCCACCATGAGGATGCCA 59.391 57.895 9.64 0.00 37.52 4.92
450 452 1.202758 CCGCCATGCCATCCTTACTTA 60.203 52.381 0.00 0.00 0.00 2.24
461 463 6.116126 GCCATCCTTACTTAAACAGACTGAT 58.884 40.000 10.08 0.00 0.00 2.90
476 478 6.251471 ACAGACTGATTTTCCAAATCCATCT 58.749 36.000 10.08 6.62 0.00 2.90
479 481 4.641989 ACTGATTTTCCAAATCCATCTCCG 59.358 41.667 6.73 0.00 0.00 4.63
481 483 5.448654 TGATTTTCCAAATCCATCTCCGAT 58.551 37.500 6.73 0.00 0.00 4.18
487 489 4.840680 TCCAAATCCATCTCCGATCATAGT 59.159 41.667 0.00 0.00 0.00 2.12
535 537 8.214721 GAGGATCCGAAAAATCTTTATTCAGT 57.785 34.615 5.98 0.00 0.00 3.41
550 552 1.442017 CAGTGTCGTCATCGTCGCA 60.442 57.895 0.00 0.00 37.87 5.10
619 621 1.500108 AAAAACGATCCACACGCGTA 58.500 45.000 13.44 0.00 37.26 4.42
654 659 1.975407 ACCACCGACGACCGAGATT 60.975 57.895 0.00 0.00 41.76 2.40
656 661 1.211969 CACCGACGACCGAGATTGT 59.788 57.895 0.00 0.00 41.76 2.71
667 672 1.227002 GAGATTGTCGGCGGAGGAC 60.227 63.158 7.21 0.00 34.99 3.85
678 683 2.184579 GGAGGACGGCTCCGAAAG 59.815 66.667 15.95 0.00 42.22 2.62
679 684 2.348888 GGAGGACGGCTCCGAAAGA 61.349 63.158 15.95 0.00 42.22 2.52
680 685 1.677637 GGAGGACGGCTCCGAAAGAT 61.678 60.000 15.95 0.00 42.22 2.40
681 686 0.175989 GAGGACGGCTCCGAAAGATT 59.824 55.000 15.95 0.00 42.22 2.40
682 687 0.108138 AGGACGGCTCCGAAAGATTG 60.108 55.000 15.95 0.00 42.22 2.67
683 688 1.090052 GGACGGCTCCGAAAGATTGG 61.090 60.000 15.95 0.00 42.83 3.16
684 689 1.706287 GACGGCTCCGAAAGATTGGC 61.706 60.000 15.95 0.00 42.83 4.52
685 690 2.472909 CGGCTCCGAAAGATTGGCC 61.473 63.158 1.35 0.00 42.83 5.36
686 691 1.077429 GGCTCCGAAAGATTGGCCT 60.077 57.895 3.32 0.00 36.96 5.19
687 692 1.098129 GGCTCCGAAAGATTGGCCTC 61.098 60.000 3.32 0.00 36.96 4.70
688 693 0.107459 GCTCCGAAAGATTGGCCTCT 60.107 55.000 3.32 0.00 0.00 3.69
689 694 1.680249 GCTCCGAAAGATTGGCCTCTT 60.680 52.381 3.32 2.20 37.06 2.85
690 695 2.716217 CTCCGAAAGATTGGCCTCTTT 58.284 47.619 17.47 17.47 45.73 2.52
694 699 1.133216 GAAAGATTGGCCTCTTTCGGC 59.867 52.381 24.02 9.33 46.53 5.54
695 700 3.201822 GAAAGATTGGCCTCTTTCGGCT 61.202 50.000 24.02 4.18 46.53 5.52
696 701 5.273668 GAAAGATTGGCCTCTTTCGGCTG 62.274 52.174 24.02 0.00 46.53 4.85
700 705 2.034221 GCCTCTTTCGGCTGGGTT 59.966 61.111 0.00 0.00 46.63 4.11
701 706 2.041115 GCCTCTTTCGGCTGGGTTC 61.041 63.158 0.00 0.00 46.63 3.62
702 707 1.377333 CCTCTTTCGGCTGGGTTCC 60.377 63.158 0.00 0.00 0.00 3.62
703 708 1.374947 CTCTTTCGGCTGGGTTCCA 59.625 57.895 0.00 0.00 0.00 3.53
711 716 4.950479 CTGGGTTCCAGCTGCTAG 57.050 61.111 8.66 0.00 45.13 3.42
712 717 1.222936 CTGGGTTCCAGCTGCTAGG 59.777 63.158 8.66 6.82 45.13 3.02
713 718 2.262774 CTGGGTTCCAGCTGCTAGGG 62.263 65.000 8.66 0.00 45.13 3.53
714 719 1.995626 GGGTTCCAGCTGCTAGGGA 60.996 63.158 8.66 2.75 0.00 4.20
715 720 1.222113 GGTTCCAGCTGCTAGGGAC 59.778 63.158 8.66 16.60 32.29 4.46
716 721 1.153549 GTTCCAGCTGCTAGGGACG 60.154 63.158 8.66 0.00 0.00 4.79
717 722 1.304962 TTCCAGCTGCTAGGGACGA 60.305 57.895 8.66 0.00 0.00 4.20
718 723 1.323271 TTCCAGCTGCTAGGGACGAG 61.323 60.000 8.66 0.00 0.00 4.18
719 724 1.754621 CCAGCTGCTAGGGACGAGA 60.755 63.158 8.66 0.00 30.78 4.04
720 725 1.732917 CAGCTGCTAGGGACGAGAG 59.267 63.158 0.00 0.00 30.78 3.20
721 726 1.454847 AGCTGCTAGGGACGAGAGG 60.455 63.158 0.00 0.00 30.78 3.69
722 727 1.454111 GCTGCTAGGGACGAGAGGA 60.454 63.158 0.00 0.00 30.78 3.71
723 728 1.038130 GCTGCTAGGGACGAGAGGAA 61.038 60.000 0.00 0.00 30.78 3.36
724 729 1.475403 CTGCTAGGGACGAGAGGAAA 58.525 55.000 0.00 0.00 30.78 3.13
725 730 1.825474 CTGCTAGGGACGAGAGGAAAA 59.175 52.381 0.00 0.00 30.78 2.29
726 731 1.549170 TGCTAGGGACGAGAGGAAAAC 59.451 52.381 0.00 0.00 30.78 2.43
727 732 1.469423 GCTAGGGACGAGAGGAAAACG 60.469 57.143 0.00 0.00 30.78 3.60
728 733 2.089980 CTAGGGACGAGAGGAAAACGA 58.910 52.381 0.00 0.00 30.78 3.85
729 734 1.558233 AGGGACGAGAGGAAAACGAT 58.442 50.000 0.00 0.00 0.00 3.73
730 735 2.731572 AGGGACGAGAGGAAAACGATA 58.268 47.619 0.00 0.00 0.00 2.92
731 736 3.297736 AGGGACGAGAGGAAAACGATAT 58.702 45.455 0.00 0.00 0.00 1.63
732 737 4.467769 AGGGACGAGAGGAAAACGATATA 58.532 43.478 0.00 0.00 0.00 0.86
733 738 4.277921 AGGGACGAGAGGAAAACGATATAC 59.722 45.833 0.00 0.00 0.00 1.47
734 739 4.277921 GGGACGAGAGGAAAACGATATACT 59.722 45.833 0.00 0.00 0.00 2.12
735 740 5.213675 GGACGAGAGGAAAACGATATACTG 58.786 45.833 0.00 0.00 0.00 2.74
736 741 5.008415 GGACGAGAGGAAAACGATATACTGA 59.992 44.000 0.00 0.00 0.00 3.41
737 742 5.819059 ACGAGAGGAAAACGATATACTGAC 58.181 41.667 0.00 0.00 0.00 3.51
738 743 5.589452 ACGAGAGGAAAACGATATACTGACT 59.411 40.000 0.00 0.00 0.00 3.41
739 744 5.910166 CGAGAGGAAAACGATATACTGACTG 59.090 44.000 0.00 0.00 0.00 3.51
740 745 6.458478 CGAGAGGAAAACGATATACTGACTGT 60.458 42.308 0.00 0.00 0.00 3.55
741 746 7.254692 CGAGAGGAAAACGATATACTGACTGTA 60.255 40.741 0.00 0.00 35.37 2.74
742 747 8.466617 AGAGGAAAACGATATACTGACTGTAT 57.533 34.615 9.60 9.60 43.62 2.29
743 748 8.915036 AGAGGAAAACGATATACTGACTGTATT 58.085 33.333 9.91 0.13 41.64 1.89
801 806 6.589135 TGATAGAGAGGTTGTACATCGTAGA 58.411 40.000 0.00 0.00 45.75 2.59
900 905 1.066929 GGGAATGTTGGATTGTGTGCC 60.067 52.381 0.00 0.00 0.00 5.01
930 940 2.037871 ACCGTGCATGGTGGAAAAC 58.962 52.632 29.84 0.00 41.85 2.43
940 950 1.064825 GGTGGAAAACTCTCCCTCCA 58.935 55.000 0.00 0.00 35.58 3.86
945 955 2.511637 GGAAAACTCTCCCTCCATCCAT 59.488 50.000 0.00 0.00 0.00 3.41
946 956 3.434310 GGAAAACTCTCCCTCCATCCATC 60.434 52.174 0.00 0.00 0.00 3.51
947 957 1.813102 AACTCTCCCTCCATCCATCC 58.187 55.000 0.00 0.00 0.00 3.51
948 958 0.644380 ACTCTCCCTCCATCCATCCA 59.356 55.000 0.00 0.00 0.00 3.41
949 959 1.225168 ACTCTCCCTCCATCCATCCAT 59.775 52.381 0.00 0.00 0.00 3.41
950 960 1.907936 CTCTCCCTCCATCCATCCATC 59.092 57.143 0.00 0.00 0.00 3.51
1019 1030 4.091365 GCAAATAGAAAAATGGCGGACAAC 59.909 41.667 0.00 0.00 0.00 3.32
1082 1113 1.239968 ACTAGACGTCCACCCGTGAC 61.240 60.000 13.01 0.00 41.98 3.67
1083 1114 1.930908 CTAGACGTCCACCCGTGACC 61.931 65.000 13.01 0.00 41.98 4.02
1084 1115 4.368543 GACGTCCACCCGTGACCC 62.369 72.222 3.51 0.00 41.98 4.46
1259 1552 2.577059 GCCGCCACAGCAGTAGTA 59.423 61.111 0.00 0.00 39.83 1.82
1260 1553 1.810030 GCCGCCACAGCAGTAGTAC 60.810 63.158 0.00 0.00 39.83 2.73
1261 1554 1.890894 CCGCCACAGCAGTAGTACT 59.109 57.895 0.00 0.00 39.83 2.73
1262 1555 0.179134 CCGCCACAGCAGTAGTACTC 60.179 60.000 0.00 0.00 39.83 2.59
1263 1556 0.179134 CGCCACAGCAGTAGTACTCC 60.179 60.000 0.00 0.00 39.83 3.85
1264 1557 1.187087 GCCACAGCAGTAGTACTCCT 58.813 55.000 0.00 0.00 39.53 3.69
1265 1558 1.135333 GCCACAGCAGTAGTACTCCTC 59.865 57.143 0.00 0.00 39.53 3.71
1268 1848 2.685897 CACAGCAGTAGTACTCCTCCTC 59.314 54.545 0.00 0.00 0.00 3.71
1275 1855 2.296943 AGTACTCCTCCTCCTCCTCT 57.703 55.000 0.00 0.00 0.00 3.69
1277 1857 3.750221 AGTACTCCTCCTCCTCCTCTTA 58.250 50.000 0.00 0.00 0.00 2.10
1278 1858 4.321282 AGTACTCCTCCTCCTCCTCTTAT 58.679 47.826 0.00 0.00 0.00 1.73
1284 1864 2.625790 CTCCTCCTCCTCTTATTCACCG 59.374 54.545 0.00 0.00 0.00 4.94
1910 2499 2.815647 CAAGAACTCGGCGAGGCC 60.816 66.667 36.81 27.17 46.75 5.19
2009 2598 1.003580 TGGATGAAGGTGAAGCAGGAC 59.996 52.381 0.00 0.00 0.00 3.85
2017 2606 2.258591 GAAGCAGGACGACAGCGA 59.741 61.111 0.00 0.00 41.64 4.93
2084 2673 4.649705 TGCCCGGAGAGGAACCCA 62.650 66.667 0.73 0.00 45.00 4.51
2334 2923 3.767230 CGAGCAGCGTGAACACCG 61.767 66.667 0.00 0.00 34.64 4.94
2341 2930 2.126888 CGTGAACACCGGCAATGC 60.127 61.111 0.00 0.00 0.00 3.56
2477 3066 2.266055 GACCTGTTCAGCCGGGAG 59.734 66.667 2.18 0.00 34.74 4.30
2960 3552 3.904717 ACTTCACTCCCTACGAGATCAT 58.095 45.455 0.00 0.00 41.63 2.45
2962 3554 4.098654 ACTTCACTCCCTACGAGATCATTG 59.901 45.833 0.00 0.00 41.63 2.82
2963 3555 3.632333 TCACTCCCTACGAGATCATTGT 58.368 45.455 0.00 0.00 41.63 2.71
2964 3556 3.381590 TCACTCCCTACGAGATCATTGTG 59.618 47.826 0.00 0.00 41.63 3.33
2965 3557 2.101582 ACTCCCTACGAGATCATTGTGC 59.898 50.000 0.00 0.00 41.63 4.57
2967 3559 2.499693 TCCCTACGAGATCATTGTGCAA 59.500 45.455 0.00 0.00 0.00 4.08
2969 3561 3.525537 CCTACGAGATCATTGTGCAAGT 58.474 45.455 0.00 0.00 0.00 3.16
2970 3562 3.935203 CCTACGAGATCATTGTGCAAGTT 59.065 43.478 0.00 0.00 0.00 2.66
2971 3563 4.033358 CCTACGAGATCATTGTGCAAGTTC 59.967 45.833 0.00 0.00 0.00 3.01
2972 3564 2.744202 ACGAGATCATTGTGCAAGTTCC 59.256 45.455 0.00 0.00 0.00 3.62
2973 3565 2.096496 CGAGATCATTGTGCAAGTTCCC 59.904 50.000 0.00 0.00 0.00 3.97
2974 3566 2.424956 GAGATCATTGTGCAAGTTCCCC 59.575 50.000 0.00 0.00 0.00 4.81
2975 3567 2.170166 GATCATTGTGCAAGTTCCCCA 58.830 47.619 0.00 0.00 0.00 4.96
2976 3568 2.307496 TCATTGTGCAAGTTCCCCAT 57.693 45.000 0.00 0.00 0.00 4.00
2977 3569 3.448093 TCATTGTGCAAGTTCCCCATA 57.552 42.857 0.00 0.00 0.00 2.74
2978 3570 3.088532 TCATTGTGCAAGTTCCCCATAC 58.911 45.455 0.00 0.00 0.00 2.39
2979 3571 2.969821 TTGTGCAAGTTCCCCATACT 57.030 45.000 0.00 0.00 0.00 2.12
2980 3572 2.969821 TGTGCAAGTTCCCCATACTT 57.030 45.000 0.00 0.00 36.31 2.24
2986 3578 3.636153 AAGTTCCCCATACTTGAGCTC 57.364 47.619 6.82 6.82 34.68 4.09
2987 3579 2.839228 AGTTCCCCATACTTGAGCTCT 58.161 47.619 16.19 0.00 0.00 4.09
2988 3580 3.185455 AGTTCCCCATACTTGAGCTCTT 58.815 45.455 16.19 1.68 0.00 2.85
2989 3581 3.054802 AGTTCCCCATACTTGAGCTCTTG 60.055 47.826 16.19 9.96 0.00 3.02
2990 3582 1.210478 TCCCCATACTTGAGCTCTTGC 59.790 52.381 16.19 0.00 40.05 4.01
2991 3583 1.065199 CCCCATACTTGAGCTCTTGCA 60.065 52.381 16.19 0.00 42.74 4.08
2992 3584 2.618816 CCCCATACTTGAGCTCTTGCAA 60.619 50.000 16.19 0.00 42.74 4.08
2993 3585 2.681848 CCCATACTTGAGCTCTTGCAAG 59.318 50.000 20.81 20.81 45.27 4.01
2994 3586 3.603532 CCATACTTGAGCTCTTGCAAGA 58.396 45.455 26.87 26.87 43.11 3.02
3019 3611 8.445275 AGATTTTACAAATTTTGGGGTGTTTC 57.555 30.769 13.42 2.50 34.12 2.78
3020 3612 7.500892 AGATTTTACAAATTTTGGGGTGTTTCC 59.499 33.333 13.42 0.00 34.12 3.13
3037 3629 5.630680 GTGTTTCCATTGTTCTTGCACATAG 59.369 40.000 0.00 0.00 0.00 2.23
3046 3638 4.202524 TGTTCTTGCACATAGTTTAGGGGT 60.203 41.667 0.00 0.00 0.00 4.95
3067 3659 6.099701 GGGGTAATTCATTCCTGGCTTAATTT 59.900 38.462 0.00 0.00 0.00 1.82
3068 3660 7.365563 GGGGTAATTCATTCCTGGCTTAATTTT 60.366 37.037 0.00 0.00 0.00 1.82
3078 3670 6.071984 TCCTGGCTTAATTTTGTAACAAGGA 58.928 36.000 0.00 0.00 0.00 3.36
3139 3731 4.418392 GCAAGAGCACATTTGACAATAGG 58.582 43.478 0.00 0.00 41.58 2.57
3176 3768 5.615925 AGTAGGAGTACATTGGATTGGAC 57.384 43.478 0.00 0.00 0.00 4.02
3194 3786 4.495422 TGGACGTCTTCTCTTGATTTAGC 58.505 43.478 16.46 0.00 0.00 3.09
3267 3943 7.841282 TGGTTAGAGTTATCCCTAATCTCTG 57.159 40.000 0.00 0.00 36.90 3.35
3348 4029 5.506686 TGAAGTCTGGTCTCTATCAATCG 57.493 43.478 0.00 0.00 0.00 3.34
3361 4046 6.015856 TCTCTATCAATCGCTTAGGAGAAAGG 60.016 42.308 0.00 0.00 0.00 3.11
3388 4073 0.250901 ACCAGCCGAGCAATCAAGTT 60.251 50.000 0.00 0.00 0.00 2.66
3426 4111 5.141182 TCCAGGTGTTTAGCCAATAAAACA 58.859 37.500 0.00 0.00 41.86 2.83
3487 4358 4.019174 CCACCAGATGGCATAGAAAAAGT 58.981 43.478 0.00 0.00 43.24 2.66
3490 4361 5.882557 CACCAGATGGCATAGAAAAAGTAGT 59.117 40.000 0.00 0.00 39.32 2.73
3496 4367 6.588719 TGGCATAGAAAAAGTAGTGCATTT 57.411 33.333 0.00 0.00 34.45 2.32
3500 4371 6.466097 GCATAGAAAAAGTAGTGCATTTCGTC 59.534 38.462 0.00 0.00 36.99 4.20
3509 4381 1.129437 GTGCATTTCGTCCTCTCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
3524 4396 5.447818 CCTCTCTTGCGCTAAAAATACCAAG 60.448 44.000 9.73 0.00 0.00 3.61
3531 4403 4.625311 GCGCTAAAAATACCAAGCAAATGT 59.375 37.500 0.00 0.00 34.60 2.71
3584 4456 5.435291 AGCAGAAAATGACTTCTATCCAGG 58.565 41.667 0.00 0.00 33.81 4.45
3586 4458 5.188434 CAGAAAATGACTTCTATCCAGGCA 58.812 41.667 0.00 0.00 33.81 4.75
3588 4460 5.190528 AGAAAATGACTTCTATCCAGGCAGA 59.809 40.000 0.00 0.00 33.81 4.26
3591 4463 3.173151 TGACTTCTATCCAGGCAGACAA 58.827 45.455 0.00 0.00 0.00 3.18
3594 4466 4.353777 ACTTCTATCCAGGCAGACAACTA 58.646 43.478 0.00 0.00 0.00 2.24
3596 4468 3.982516 TCTATCCAGGCAGACAACTACT 58.017 45.455 0.00 0.00 0.00 2.57
3597 4469 3.954904 TCTATCCAGGCAGACAACTACTC 59.045 47.826 0.00 0.00 0.00 2.59
3598 4470 2.310779 TCCAGGCAGACAACTACTCT 57.689 50.000 0.00 0.00 0.00 3.24
3599 4471 2.171840 TCCAGGCAGACAACTACTCTC 58.828 52.381 0.00 0.00 0.00 3.20
3600 4472 2.175202 CCAGGCAGACAACTACTCTCT 58.825 52.381 0.00 0.00 0.00 3.10
3601 4473 2.165437 CCAGGCAGACAACTACTCTCTC 59.835 54.545 0.00 0.00 0.00 3.20
3602 4474 2.088423 AGGCAGACAACTACTCTCTCG 58.912 52.381 0.00 0.00 0.00 4.04
3603 4475 1.133407 GGCAGACAACTACTCTCTCGG 59.867 57.143 0.00 0.00 0.00 4.63
3604 4476 1.813786 GCAGACAACTACTCTCTCGGT 59.186 52.381 0.00 0.00 0.00 4.69
3605 4477 2.159490 GCAGACAACTACTCTCTCGGTC 60.159 54.545 0.00 0.00 0.00 4.79
3606 4478 2.420722 CAGACAACTACTCTCTCGGTCC 59.579 54.545 0.00 0.00 0.00 4.46
3607 4479 1.744522 GACAACTACTCTCTCGGTCCC 59.255 57.143 0.00 0.00 0.00 4.46
3608 4480 1.075050 ACAACTACTCTCTCGGTCCCA 59.925 52.381 0.00 0.00 0.00 4.37
3609 4481 2.168496 CAACTACTCTCTCGGTCCCAA 58.832 52.381 0.00 0.00 0.00 4.12
3610 4482 2.561419 CAACTACTCTCTCGGTCCCAAA 59.439 50.000 0.00 0.00 0.00 3.28
3611 4483 2.885616 ACTACTCTCTCGGTCCCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
3612 4484 3.442076 ACTACTCTCTCGGTCCCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3613 4485 4.607239 ACTACTCTCTCGGTCCCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
3614 4486 5.021458 ACTACTCTCTCGGTCCCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
3615 4487 4.473477 ACTCTCTCGGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3616 4488 3.838903 ACTCTCTCGGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3617 4489 4.184629 CTCTCTCGGTCCCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3618 4490 3.581332 TCTCTCGGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3619 4491 3.933332 CTCTCGGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3620 4492 3.581332 TCTCGGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
3621 4493 3.933332 CTCGGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3622 4494 3.325425 TCGGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3623 4495 4.069304 CGGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3624 4496 4.083484 CGGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3625 4497 5.070685 GGTCCCAAAATAAGTGTCTCAACT 58.929 41.667 0.00 0.00 0.00 3.16
3626 4498 5.535030 GGTCCCAAAATAAGTGTCTCAACTT 59.465 40.000 0.00 0.00 42.89 2.66
3627 4499 6.040504 GGTCCCAAAATAAGTGTCTCAACTTT 59.959 38.462 0.00 0.00 40.77 2.66
3628 4500 7.229907 GGTCCCAAAATAAGTGTCTCAACTTTA 59.770 37.037 0.00 0.00 40.77 1.85
3629 4501 8.793592 GTCCCAAAATAAGTGTCTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
3666 4538 7.733402 ACAAAATTACGTTAAGGCTAAGACA 57.267 32.000 0.00 0.00 0.00 3.41
3667 4539 7.578852 ACAAAATTACGTTAAGGCTAAGACAC 58.421 34.615 0.00 0.00 0.00 3.67
3668 4540 7.443272 ACAAAATTACGTTAAGGCTAAGACACT 59.557 33.333 0.00 0.00 0.00 3.55
3669 4541 7.974482 AAATTACGTTAAGGCTAAGACACTT 57.026 32.000 0.00 0.00 0.00 3.16
3670 4542 9.492973 AAAATTACGTTAAGGCTAAGACACTTA 57.507 29.630 0.00 0.00 0.00 2.24
3671 4543 9.662947 AAATTACGTTAAGGCTAAGACACTTAT 57.337 29.630 0.00 0.00 0.00 1.73
3672 4544 9.662947 AATTACGTTAAGGCTAAGACACTTATT 57.337 29.630 0.00 0.00 0.00 1.40
3673 4545 9.662947 ATTACGTTAAGGCTAAGACACTTATTT 57.337 29.630 0.00 0.00 0.00 1.40
3674 4546 7.592439 ACGTTAAGGCTAAGACACTTATTTC 57.408 36.000 0.00 0.00 0.00 2.17
3675 4547 6.309737 ACGTTAAGGCTAAGACACTTATTTCG 59.690 38.462 0.00 0.00 0.00 3.46
3676 4548 6.529125 CGTTAAGGCTAAGACACTTATTTCGA 59.471 38.462 0.00 0.00 0.00 3.71
3677 4549 7.253684 CGTTAAGGCTAAGACACTTATTTCGAG 60.254 40.741 0.00 0.00 0.00 4.04
3678 4550 5.916661 AGGCTAAGACACTTATTTCGAGA 57.083 39.130 0.00 0.00 0.00 4.04
3679 4551 5.652518 AGGCTAAGACACTTATTTCGAGAC 58.347 41.667 0.00 0.00 0.00 3.36
3680 4552 4.499758 GGCTAAGACACTTATTTCGAGACG 59.500 45.833 0.00 0.00 0.00 4.18
3681 4553 4.499758 GCTAAGACACTTATTTCGAGACGG 59.500 45.833 0.00 0.00 0.00 4.79
3682 4554 4.778534 AAGACACTTATTTCGAGACGGA 57.221 40.909 0.00 0.00 0.00 4.69
3683 4555 4.358494 AGACACTTATTTCGAGACGGAG 57.642 45.455 0.00 0.00 0.00 4.63
3684 4556 4.008330 AGACACTTATTTCGAGACGGAGA 58.992 43.478 0.00 0.00 0.00 3.71
3685 4557 4.095185 AGACACTTATTTCGAGACGGAGAG 59.905 45.833 0.00 0.00 0.00 3.20
3686 4558 4.008330 ACACTTATTTCGAGACGGAGAGA 58.992 43.478 0.00 0.00 0.00 3.10
3687 4559 4.095185 ACACTTATTTCGAGACGGAGAGAG 59.905 45.833 0.00 0.00 0.00 3.20
3688 4560 4.095185 CACTTATTTCGAGACGGAGAGAGT 59.905 45.833 0.00 0.00 0.00 3.24
3689 4561 5.293814 CACTTATTTCGAGACGGAGAGAGTA 59.706 44.000 0.00 0.00 0.00 2.59
3690 4562 6.017770 CACTTATTTCGAGACGGAGAGAGTAT 60.018 42.308 0.00 0.00 0.00 2.12
3695 4567 5.021033 TCGAGACGGAGAGAGTATAAACT 57.979 43.478 0.00 0.00 39.21 2.66
3702 4574 7.124448 AGACGGAGAGAGTATAAACTTTGGATT 59.876 37.037 0.00 0.00 35.56 3.01
3737 4611 7.555554 AGAAGGTATGATTGGTTTCTCTTGATG 59.444 37.037 0.00 0.00 0.00 3.07
3748 4622 3.081710 TCTCTTGATGTGGACCGAGTA 57.918 47.619 0.00 0.00 0.00 2.59
3749 4623 3.427573 TCTCTTGATGTGGACCGAGTAA 58.572 45.455 0.00 0.00 0.00 2.24
3750 4624 3.830178 TCTCTTGATGTGGACCGAGTAAA 59.170 43.478 0.00 0.00 0.00 2.01
3751 4625 4.282449 TCTCTTGATGTGGACCGAGTAAAA 59.718 41.667 0.00 0.00 0.00 1.52
3752 4626 4.963373 TCTTGATGTGGACCGAGTAAAAA 58.037 39.130 0.00 0.00 0.00 1.94
3793 4667 6.719370 ACCTGGTGCTGTCAATTTAATTAGAA 59.281 34.615 0.00 0.00 0.00 2.10
3819 4693 5.540337 TGAGAAACAGAGTGGAGTTCATACT 59.460 40.000 0.00 0.00 37.31 2.12
3821 4695 6.226787 AGAAACAGAGTGGAGTTCATACTTG 58.773 40.000 0.00 0.00 33.84 3.16
3826 4700 4.841246 AGAGTGGAGTTCATACTTGGAAGT 59.159 41.667 0.00 0.00 42.91 3.01
3836 4710 7.556275 AGTTCATACTTGGAAGTTTCAGTTTCA 59.444 33.333 0.00 0.00 40.37 2.69
3842 4716 7.090808 ACTTGGAAGTTTCAGTTTCAAAACTC 58.909 34.615 5.17 0.00 43.14 3.01
3846 4720 7.090808 GGAAGTTTCAGTTTCAAAACTCTGTT 58.909 34.615 5.17 0.00 45.65 3.16
3854 4728 4.472691 TTCAAAACTCTGTTCTCATGCG 57.527 40.909 0.00 0.00 0.00 4.73
3855 4729 3.466836 TCAAAACTCTGTTCTCATGCGT 58.533 40.909 0.00 0.00 0.00 5.24
3880 4754 4.510711 CGAGAAGTTTCAGCATGCTCATAT 59.489 41.667 19.68 1.76 34.76 1.78
3885 4759 4.034858 AGTTTCAGCATGCTCATATTGACG 59.965 41.667 19.68 3.08 34.76 4.35
3886 4760 3.457610 TCAGCATGCTCATATTGACGA 57.542 42.857 19.68 5.81 34.76 4.20
3887 4761 3.999046 TCAGCATGCTCATATTGACGAT 58.001 40.909 19.68 0.00 34.76 3.73
3888 4762 4.383173 TCAGCATGCTCATATTGACGATT 58.617 39.130 19.68 0.00 34.76 3.34
3889 4763 4.450080 TCAGCATGCTCATATTGACGATTC 59.550 41.667 19.68 0.00 34.76 2.52
3890 4764 4.451435 CAGCATGCTCATATTGACGATTCT 59.549 41.667 19.68 0.00 0.00 2.40
3892 4766 6.146673 CAGCATGCTCATATTGACGATTCTAA 59.853 38.462 19.68 0.00 0.00 2.10
3894 4768 7.227314 AGCATGCTCATATTGACGATTCTAAAA 59.773 33.333 16.30 0.00 0.00 1.52
3895 4769 7.857389 GCATGCTCATATTGACGATTCTAAAAA 59.143 33.333 11.37 0.00 0.00 1.94
3915 4789 1.168714 AAAAGCTCATTCTGACCGGC 58.831 50.000 0.00 0.00 0.00 6.13
3916 4790 0.036732 AAAGCTCATTCTGACCGGCA 59.963 50.000 0.00 0.00 0.00 5.69
3917 4791 0.674895 AAGCTCATTCTGACCGGCAC 60.675 55.000 0.00 0.00 0.00 5.01
4023 4898 7.121315 CCTCTTCGATCTTTCCTTTTGGTAAAT 59.879 37.037 0.00 0.00 41.38 1.40
4057 4932 9.893305 TTAATTTTCTCAGAACCTCGAAAAATC 57.107 29.630 0.00 0.00 38.41 2.17
4059 4934 7.510549 TTTTCTCAGAACCTCGAAAAATCAT 57.489 32.000 0.00 0.00 33.80 2.45
4065 4940 5.853282 CAGAACCTCGAAAAATCATCACAAC 59.147 40.000 0.00 0.00 0.00 3.32
4070 4945 5.643777 CCTCGAAAAATCATCACAACTAGGT 59.356 40.000 0.00 0.00 0.00 3.08
4099 4974 9.613428 TGTTAAGTCAAAAGAATCTTCTTCTCA 57.387 29.630 5.69 0.00 46.22 3.27
4109 4984 7.309770 AGAATCTTCTTCTCAGTACCAACTT 57.690 36.000 0.00 0.00 32.55 2.66
4120 4995 2.781174 AGTACCAACTTTGACCCCTTCA 59.219 45.455 0.00 0.00 29.00 3.02
4121 4996 2.838637 ACCAACTTTGACCCCTTCAA 57.161 45.000 0.00 0.00 42.83 2.69
4122 4997 2.384828 ACCAACTTTGACCCCTTCAAC 58.615 47.619 0.00 0.00 44.28 3.18
4123 4998 1.686587 CCAACTTTGACCCCTTCAACC 59.313 52.381 0.00 0.00 44.28 3.77
4128 5003 1.529744 TTGACCCCTTCAACCCTTCT 58.470 50.000 0.00 0.00 39.45 2.85
4130 5005 2.708759 TGACCCCTTCAACCCTTCTTA 58.291 47.619 0.00 0.00 0.00 2.10
4132 5007 2.374170 GACCCCTTCAACCCTTCTTACA 59.626 50.000 0.00 0.00 0.00 2.41
4145 5020 9.810545 CAACCCTTCTTACACTGAAAATTAAAA 57.189 29.630 0.00 0.00 0.00 1.52
4146 5021 9.811995 AACCCTTCTTACACTGAAAATTAAAAC 57.188 29.630 0.00 0.00 0.00 2.43
4167 5042 8.642935 AAAACCAAAAATTCCTTTTTCTTCCA 57.357 26.923 0.00 0.00 41.49 3.53
4232 5108 9.454585 CATATTCATACACATTTGGTCATGAAC 57.545 33.333 2.98 2.98 39.20 3.18
4236 5112 4.223320 ACACATTTGGTCATGAACGAAC 57.777 40.909 15.82 0.00 0.00 3.95
4262 5138 5.610235 CGGTTCTTTCCGTTTATTAACCA 57.390 39.130 0.00 0.00 44.77 3.67
4267 5143 8.918658 GGTTCTTTCCGTTTATTAACCAAATTC 58.081 33.333 0.00 0.00 35.93 2.17
4270 5146 8.517056 TCTTTCCGTTTATTAACCAAATTCCTC 58.483 33.333 0.00 0.00 0.00 3.71
4275 5151 8.732531 CCGTTTATTAACCAAATTCCTCTAACA 58.267 33.333 0.00 0.00 0.00 2.41
4286 5162 1.419762 TCCTCTAACAAGTGGCAAGCA 59.580 47.619 0.00 0.00 0.00 3.91
4288 5164 2.821969 CCTCTAACAAGTGGCAAGCATT 59.178 45.455 0.00 0.00 0.00 3.56
4298 5174 5.779529 AGTGGCAAGCATTATATTCCAAG 57.220 39.130 0.00 0.00 0.00 3.61
4299 5175 5.448654 AGTGGCAAGCATTATATTCCAAGA 58.551 37.500 0.00 0.00 0.00 3.02
4300 5176 6.073314 AGTGGCAAGCATTATATTCCAAGAT 58.927 36.000 0.00 0.00 0.00 2.40
4301 5177 6.208204 AGTGGCAAGCATTATATTCCAAGATC 59.792 38.462 0.00 0.00 0.00 2.75
4302 5178 6.016024 GTGGCAAGCATTATATTCCAAGATCA 60.016 38.462 0.00 0.00 0.00 2.92
4303 5179 6.550481 TGGCAAGCATTATATTCCAAGATCAA 59.450 34.615 0.00 0.00 0.00 2.57
4304 5180 7.088905 GGCAAGCATTATATTCCAAGATCAAG 58.911 38.462 0.00 0.00 0.00 3.02
4305 5181 7.040201 GGCAAGCATTATATTCCAAGATCAAGA 60.040 37.037 0.00 0.00 0.00 3.02
4306 5182 8.521176 GCAAGCATTATATTCCAAGATCAAGAT 58.479 33.333 0.00 0.00 0.00 2.40
4346 5222 9.191995 GGAAAACAAATCATATTATAAAGGGCG 57.808 33.333 0.00 0.00 0.00 6.13
4347 5223 9.959749 GAAAACAAATCATATTATAAAGGGCGA 57.040 29.630 0.00 0.00 0.00 5.54
4348 5224 9.965824 AAAACAAATCATATTATAAAGGGCGAG 57.034 29.630 0.00 0.00 0.00 5.03
4349 5225 7.687941 ACAAATCATATTATAAAGGGCGAGG 57.312 36.000 0.00 0.00 0.00 4.63
4350 5226 7.231467 ACAAATCATATTATAAAGGGCGAGGT 58.769 34.615 0.00 0.00 0.00 3.85
4351 5227 7.724061 ACAAATCATATTATAAAGGGCGAGGTT 59.276 33.333 0.00 0.00 0.00 3.50
4352 5228 9.226606 CAAATCATATTATAAAGGGCGAGGTTA 57.773 33.333 0.00 0.00 0.00 2.85
4353 5229 9.802039 AAATCATATTATAAAGGGCGAGGTTAA 57.198 29.630 0.00 0.00 0.00 2.01
4354 5230 8.788325 ATCATATTATAAAGGGCGAGGTTAAC 57.212 34.615 0.00 0.00 0.00 2.01
4355 5231 7.970102 TCATATTATAAAGGGCGAGGTTAACT 58.030 34.615 5.42 0.00 0.00 2.24
4356 5232 8.092687 TCATATTATAAAGGGCGAGGTTAACTC 58.907 37.037 5.42 0.65 43.02 3.01
4357 5233 5.680594 TTATAAAGGGCGAGGTTAACTCA 57.319 39.130 5.42 0.00 46.98 3.41
4358 5234 2.474410 AAAGGGCGAGGTTAACTCAG 57.526 50.000 5.42 0.00 46.98 3.35
4359 5235 1.640917 AAGGGCGAGGTTAACTCAGA 58.359 50.000 5.42 0.00 46.98 3.27
4360 5236 1.640917 AGGGCGAGGTTAACTCAGAA 58.359 50.000 5.42 0.00 46.98 3.02
4361 5237 1.275573 AGGGCGAGGTTAACTCAGAAC 59.724 52.381 5.42 0.00 46.98 3.01
4362 5238 1.675116 GGGCGAGGTTAACTCAGAACC 60.675 57.143 5.42 0.00 46.98 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.969196 AGGCAGGTGACGTGCGTG 62.969 66.667 22.19 0.00 42.19 5.34
37 38 6.823182 TCATTCTTTTCTTCGATGGCTATTGA 59.177 34.615 0.00 0.00 0.00 2.57
74 75 3.112709 GCGTCGAGCTTGGGTGAC 61.113 66.667 0.00 0.00 44.04 3.67
130 131 5.200483 AGGACTTCATTTTTGGTGAGTCAA 58.800 37.500 0.00 0.00 31.39 3.18
133 134 6.149474 CGATAAGGACTTCATTTTTGGTGAGT 59.851 38.462 0.00 0.00 0.00 3.41
150 151 6.183360 CGGTTTGATTCATTCAACGATAAGGA 60.183 38.462 0.00 0.00 43.99 3.36
171 172 0.179084 CCGATGTATGTGCTCCGGTT 60.179 55.000 0.00 0.00 33.02 4.44
177 178 0.806102 GCGTGTCCGATGTATGTGCT 60.806 55.000 0.00 0.00 35.63 4.40
181 182 1.139989 GATGGCGTGTCCGATGTATG 58.860 55.000 0.00 0.00 37.80 2.39
182 183 0.318699 CGATGGCGTGTCCGATGTAT 60.319 55.000 0.00 0.00 37.80 2.29
183 184 1.065109 CGATGGCGTGTCCGATGTA 59.935 57.895 0.00 0.00 37.80 2.29
184 185 2.202743 CGATGGCGTGTCCGATGT 60.203 61.111 0.00 0.00 37.80 3.06
186 187 1.518572 GTTCGATGGCGTGTCCGAT 60.519 57.895 0.00 0.00 38.98 4.18
187 188 2.126228 GTTCGATGGCGTGTCCGA 60.126 61.111 0.00 0.00 38.98 4.55
212 213 1.633432 CTTAGTCATGGTGGGGTCCAA 59.367 52.381 0.00 0.00 41.09 3.53
262 264 2.215196 GCTAGGTTTGTGGTTCGTGAA 58.785 47.619 0.00 0.00 0.00 3.18
263 265 1.139256 TGCTAGGTTTGTGGTTCGTGA 59.861 47.619 0.00 0.00 0.00 4.35
297 299 0.607620 TGTGCATCGACCACATCTGA 59.392 50.000 14.66 0.00 38.21 3.27
305 307 2.545526 CAGATTATGGTGTGCATCGACC 59.454 50.000 5.73 5.73 0.00 4.79
315 317 1.802960 GAGCGGATGCAGATTATGGTG 59.197 52.381 0.00 0.00 46.23 4.17
353 355 2.798364 TTCCAGTGTCGGCGTGGAA 61.798 57.895 21.38 21.38 46.01 3.53
371 373 4.287967 CGTTGCGACGGCGTTTGT 62.288 61.111 19.10 0.00 45.32 2.83
436 438 5.012664 TCAGTCTGTTTAAGTAAGGATGGCA 59.987 40.000 0.00 0.00 0.00 4.92
450 452 6.729690 TGGATTTGGAAAATCAGTCTGTTT 57.270 33.333 13.19 0.00 0.00 2.83
461 463 4.854173 TGATCGGAGATGGATTTGGAAAA 58.146 39.130 0.00 0.00 45.12 2.29
476 478 1.816835 GCCATCGGTACTATGATCGGA 59.183 52.381 9.47 0.00 32.89 4.55
479 481 3.512033 GAGGCCATCGGTACTATGATC 57.488 52.381 5.01 0.00 32.89 2.92
506 508 5.904362 AAAGATTTTTCGGATCCTCCTTG 57.096 39.130 10.75 0.00 33.30 3.61
508 510 7.346471 TGAATAAAGATTTTTCGGATCCTCCT 58.654 34.615 10.75 0.00 33.30 3.69
509 511 7.283354 ACTGAATAAAGATTTTTCGGATCCTCC 59.717 37.037 10.75 0.00 31.60 4.30
510 512 8.125448 CACTGAATAAAGATTTTTCGGATCCTC 58.875 37.037 10.75 0.00 31.60 3.71
521 523 6.590292 ACGATGACGACACTGAATAAAGATTT 59.410 34.615 0.00 0.00 42.66 2.17
535 537 2.504026 GCTGCGACGATGACGACA 60.504 61.111 0.00 0.00 42.66 4.35
550 552 1.522355 CATCGTCTTGGCATCGGCT 60.522 57.895 0.00 0.00 40.87 5.52
556 558 1.234821 GGTTGTTCATCGTCTTGGCA 58.765 50.000 0.00 0.00 0.00 4.92
595 597 3.476181 GCGTGTGGATCGTTTTTACTTC 58.524 45.455 0.00 0.00 0.00 3.01
667 672 2.472909 GGCCAATCTTTCGGAGCCG 61.473 63.158 0.00 1.74 41.35 5.52
668 673 1.077429 AGGCCAATCTTTCGGAGCC 60.077 57.895 5.01 0.00 40.79 4.70
669 674 0.107459 AGAGGCCAATCTTTCGGAGC 60.107 55.000 5.01 0.00 0.00 4.70
670 675 2.409948 AAGAGGCCAATCTTTCGGAG 57.590 50.000 5.01 0.00 36.05 4.63
671 676 2.879103 AAAGAGGCCAATCTTTCGGA 57.121 45.000 12.96 0.00 44.32 4.55
684 689 1.377333 GGAACCCAGCCGAAAGAGG 60.377 63.158 0.00 0.00 0.00 3.69
685 690 0.674895 CTGGAACCCAGCCGAAAGAG 60.675 60.000 0.00 0.00 45.13 2.85
686 691 1.374947 CTGGAACCCAGCCGAAAGA 59.625 57.895 0.00 0.00 45.13 2.52
687 692 3.987404 CTGGAACCCAGCCGAAAG 58.013 61.111 0.00 0.00 45.13 2.62
695 700 2.300967 CCCTAGCAGCTGGAACCCA 61.301 63.158 17.12 0.00 0.00 4.51
696 701 1.995626 TCCCTAGCAGCTGGAACCC 60.996 63.158 17.12 0.00 0.00 4.11
697 702 1.222113 GTCCCTAGCAGCTGGAACC 59.778 63.158 17.12 0.00 0.00 3.62
698 703 1.153549 CGTCCCTAGCAGCTGGAAC 60.154 63.158 17.12 4.39 0.00 3.62
699 704 1.304962 TCGTCCCTAGCAGCTGGAA 60.305 57.895 17.12 0.00 0.00 3.53
700 705 1.754621 CTCGTCCCTAGCAGCTGGA 60.755 63.158 17.12 1.86 0.00 3.86
701 706 1.733402 CTCTCGTCCCTAGCAGCTGG 61.733 65.000 17.12 0.68 0.00 4.85
702 707 1.732917 CTCTCGTCCCTAGCAGCTG 59.267 63.158 10.11 10.11 0.00 4.24
703 708 1.454847 CCTCTCGTCCCTAGCAGCT 60.455 63.158 0.00 0.00 0.00 4.24
704 709 1.038130 TTCCTCTCGTCCCTAGCAGC 61.038 60.000 0.00 0.00 0.00 5.25
705 710 1.475403 TTTCCTCTCGTCCCTAGCAG 58.525 55.000 0.00 0.00 0.00 4.24
706 711 1.549170 GTTTTCCTCTCGTCCCTAGCA 59.451 52.381 0.00 0.00 0.00 3.49
707 712 1.469423 CGTTTTCCTCTCGTCCCTAGC 60.469 57.143 0.00 0.00 0.00 3.42
708 713 2.089980 TCGTTTTCCTCTCGTCCCTAG 58.910 52.381 0.00 0.00 0.00 3.02
709 714 2.205022 TCGTTTTCCTCTCGTCCCTA 57.795 50.000 0.00 0.00 0.00 3.53
710 715 1.558233 ATCGTTTTCCTCTCGTCCCT 58.442 50.000 0.00 0.00 0.00 4.20
711 716 3.729862 ATATCGTTTTCCTCTCGTCCC 57.270 47.619 0.00 0.00 0.00 4.46
712 717 5.008415 TCAGTATATCGTTTTCCTCTCGTCC 59.992 44.000 0.00 0.00 0.00 4.79
713 718 5.908499 GTCAGTATATCGTTTTCCTCTCGTC 59.092 44.000 0.00 0.00 0.00 4.20
714 719 5.589452 AGTCAGTATATCGTTTTCCTCTCGT 59.411 40.000 0.00 0.00 0.00 4.18
715 720 5.910166 CAGTCAGTATATCGTTTTCCTCTCG 59.090 44.000 0.00 0.00 0.00 4.04
716 721 6.797454 ACAGTCAGTATATCGTTTTCCTCTC 58.203 40.000 0.00 0.00 0.00 3.20
717 722 6.777213 ACAGTCAGTATATCGTTTTCCTCT 57.223 37.500 0.00 0.00 0.00 3.69
777 782 6.589135 TCTACGATGTACAACCTCTCTATCA 58.411 40.000 0.00 0.00 0.00 2.15
801 806 5.431179 ACCCCAGTTTTGATACTCGTATT 57.569 39.130 0.00 0.00 0.00 1.89
930 940 1.907936 GATGGATGGATGGAGGGAGAG 59.092 57.143 0.00 0.00 0.00 3.20
940 950 2.651190 TGGATGGATGGATGGATGGAT 58.349 47.619 0.00 0.00 0.00 3.41
945 955 2.060275 CCTCTTGGATGGATGGATGGA 58.940 52.381 0.00 0.00 34.57 3.41
946 956 2.060275 TCCTCTTGGATGGATGGATGG 58.940 52.381 0.00 0.00 37.46 3.51
947 957 3.393609 TCTTCCTCTTGGATGGATGGATG 59.606 47.826 0.00 0.00 42.81 3.51
948 958 3.651904 CTCTTCCTCTTGGATGGATGGAT 59.348 47.826 0.00 0.00 42.81 3.41
949 959 3.044156 CTCTTCCTCTTGGATGGATGGA 58.956 50.000 0.00 0.00 42.81 3.41
950 960 2.106166 CCTCTTCCTCTTGGATGGATGG 59.894 54.545 0.00 0.00 42.81 3.51
1019 1030 2.620112 CCGTGGTTGCTGGCTTGAG 61.620 63.158 0.00 0.00 0.00 3.02
1052 1063 1.671845 GACGTCTAGTAGGCAGACAGG 59.328 57.143 8.70 0.00 42.12 4.00
1256 1549 2.296943 AGAGGAGGAGGAGGAGTACT 57.703 55.000 0.00 0.00 0.00 2.73
1257 1550 4.734843 ATAAGAGGAGGAGGAGGAGTAC 57.265 50.000 0.00 0.00 0.00 2.73
1259 1552 3.533907 TGAATAAGAGGAGGAGGAGGAGT 59.466 47.826 0.00 0.00 0.00 3.85
1260 1553 3.895041 GTGAATAAGAGGAGGAGGAGGAG 59.105 52.174 0.00 0.00 0.00 3.69
1261 1554 3.374318 GGTGAATAAGAGGAGGAGGAGGA 60.374 52.174 0.00 0.00 0.00 3.71
1262 1555 2.969262 GGTGAATAAGAGGAGGAGGAGG 59.031 54.545 0.00 0.00 0.00 4.30
1263 1556 2.625790 CGGTGAATAAGAGGAGGAGGAG 59.374 54.545 0.00 0.00 0.00 3.69
1264 1557 2.024273 ACGGTGAATAAGAGGAGGAGGA 60.024 50.000 0.00 0.00 0.00 3.71
1265 1558 2.362717 GACGGTGAATAAGAGGAGGAGG 59.637 54.545 0.00 0.00 0.00 4.30
1268 1848 2.362717 GAGGACGGTGAATAAGAGGAGG 59.637 54.545 0.00 0.00 0.00 4.30
1275 1855 0.458669 GCGAGGAGGACGGTGAATAA 59.541 55.000 0.00 0.00 0.00 1.40
1277 1857 2.893398 GCGAGGAGGACGGTGAAT 59.107 61.111 0.00 0.00 0.00 2.57
1278 1858 3.744719 CGCGAGGAGGACGGTGAA 61.745 66.667 0.00 0.00 0.00 3.18
1284 1864 4.500116 GTGGAGCGCGAGGAGGAC 62.500 72.222 12.10 0.00 0.00 3.85
1712 2301 4.021925 GCGTGGAGGAAGGCCAGT 62.022 66.667 5.01 0.00 35.77 4.00
1718 2307 2.125912 CACTCGGCGTGGAGGAAG 60.126 66.667 13.91 0.72 40.02 3.46
1910 2499 2.766400 GGAGAGGTCGAGGTCGCAG 61.766 68.421 0.00 0.00 39.60 5.18
2186 2775 2.436824 GCCTCCTTCTTGTCGCCC 60.437 66.667 0.00 0.00 0.00 6.13
2372 2961 1.198713 GGAAGCTCATGTCCTCCAGA 58.801 55.000 0.00 0.00 0.00 3.86
2477 3066 2.872001 CTCGTCGTCGTGCTCAGC 60.872 66.667 1.33 0.00 38.33 4.26
2792 3381 3.605749 AATGTCCGTGCTGTCCGGG 62.606 63.158 0.00 0.00 45.51 5.73
2927 3516 2.618053 GAGTGAAGTTACCATCACCCG 58.382 52.381 13.07 0.00 45.55 5.28
2960 3552 2.890311 CAAGTATGGGGAACTTGCACAA 59.110 45.455 3.29 0.00 45.15 3.33
2967 3559 2.839228 AGAGCTCAAGTATGGGGAACT 58.161 47.619 17.77 0.00 0.00 3.01
2969 3561 2.356125 GCAAGAGCTCAAGTATGGGGAA 60.356 50.000 17.77 0.00 37.91 3.97
2970 3562 1.210478 GCAAGAGCTCAAGTATGGGGA 59.790 52.381 17.77 0.00 37.91 4.81
2971 3563 1.065199 TGCAAGAGCTCAAGTATGGGG 60.065 52.381 17.77 0.00 42.74 4.96
2972 3564 2.408271 TGCAAGAGCTCAAGTATGGG 57.592 50.000 17.77 0.00 42.74 4.00
2973 3565 3.603532 TCTTGCAAGAGCTCAAGTATGG 58.396 45.455 25.16 0.00 42.74 2.74
2974 3566 4.861389 CTCTTGCAAGAGCTCAAGTATG 57.139 45.455 36.46 15.50 45.26 2.39
2985 3577 9.044150 CCAAAATTTGTAAAATCTCTTGCAAGA 57.956 29.630 26.87 26.87 33.33 3.02
2986 3578 8.284693 CCCAAAATTTGTAAAATCTCTTGCAAG 58.715 33.333 20.81 20.81 33.33 4.01
2987 3579 7.228308 CCCCAAAATTTGTAAAATCTCTTGCAA 59.772 33.333 4.92 0.00 0.00 4.08
2988 3580 6.709846 CCCCAAAATTTGTAAAATCTCTTGCA 59.290 34.615 4.92 0.00 0.00 4.08
2989 3581 6.710295 ACCCCAAAATTTGTAAAATCTCTTGC 59.290 34.615 4.92 0.00 0.00 4.01
2990 3582 7.714813 ACACCCCAAAATTTGTAAAATCTCTTG 59.285 33.333 4.92 0.00 0.00 3.02
2991 3583 7.801104 ACACCCCAAAATTTGTAAAATCTCTT 58.199 30.769 4.92 0.00 0.00 2.85
2992 3584 7.373617 ACACCCCAAAATTTGTAAAATCTCT 57.626 32.000 4.92 0.00 0.00 3.10
2993 3585 8.445275 AAACACCCCAAAATTTGTAAAATCTC 57.555 30.769 4.92 0.00 0.00 2.75
2994 3586 7.500892 GGAAACACCCCAAAATTTGTAAAATCT 59.499 33.333 4.92 0.00 0.00 2.40
2995 3587 7.283354 TGGAAACACCCCAAAATTTGTAAAATC 59.717 33.333 4.92 0.00 38.00 2.17
2996 3588 7.119387 TGGAAACACCCCAAAATTTGTAAAAT 58.881 30.769 4.92 0.00 38.00 1.82
2997 3589 6.481643 TGGAAACACCCCAAAATTTGTAAAA 58.518 32.000 4.92 0.00 38.00 1.52
2998 3590 6.062258 TGGAAACACCCCAAAATTTGTAAA 57.938 33.333 4.92 0.00 38.00 2.01
2999 3591 5.693769 TGGAAACACCCCAAAATTTGTAA 57.306 34.783 4.92 0.00 38.00 2.41
3019 3611 6.324819 CCTAAACTATGTGCAAGAACAATGG 58.675 40.000 0.00 0.00 32.81 3.16
3020 3612 6.324819 CCCTAAACTATGTGCAAGAACAATG 58.675 40.000 0.00 0.00 32.81 2.82
3037 3629 4.341235 GCCAGGAATGAATTACCCCTAAAC 59.659 45.833 0.00 0.00 0.00 2.01
3067 3659 8.001881 TGCTACAAAGAATTTCCTTGTTACAA 57.998 30.769 16.35 0.00 35.03 2.41
3068 3660 7.575414 TGCTACAAAGAATTTCCTTGTTACA 57.425 32.000 16.35 12.57 35.03 2.41
3139 3731 8.964772 TGTACTCCTACTACCAATCTTTTAGAC 58.035 37.037 0.00 0.00 0.00 2.59
3176 3768 5.006165 GTCCATGCTAAATCAAGAGAAGACG 59.994 44.000 0.00 0.00 0.00 4.18
3194 3786 2.205022 TGAAGGCAAAGAGGTCCATG 57.795 50.000 0.00 0.00 0.00 3.66
3267 3943 5.560966 TTGACAGAAAACAACTCCTTGAC 57.439 39.130 0.00 0.00 0.00 3.18
3348 4029 5.949952 TGGTTTATTTCCCTTTCTCCTAAGC 59.050 40.000 0.00 0.00 0.00 3.09
3361 4046 1.459450 TGCTCGGCTGGTTTATTTCC 58.541 50.000 0.00 0.00 0.00 3.13
3388 4073 8.837099 AAACACCTGGATAAAATATCCAATCA 57.163 30.769 17.35 0.00 46.50 2.57
3405 4090 5.868801 CCATGTTTTATTGGCTAAACACCTG 59.131 40.000 0.00 0.00 44.32 4.00
3426 4111 1.145119 AGCACTGATGATGATGCCCAT 59.855 47.619 0.00 0.00 38.92 4.00
3485 4356 3.093057 AGAGAGGACGAAATGCACTACT 58.907 45.455 0.00 0.00 0.00 2.57
3487 4358 3.849911 CAAGAGAGGACGAAATGCACTA 58.150 45.455 0.00 0.00 0.00 2.74
3490 4361 1.442769 GCAAGAGAGGACGAAATGCA 58.557 50.000 0.00 0.00 32.80 3.96
3496 4367 0.885879 TTTAGCGCAAGAGAGGACGA 59.114 50.000 11.47 0.00 43.02 4.20
3500 4371 3.938963 TGGTATTTTTAGCGCAAGAGAGG 59.061 43.478 11.47 0.00 43.02 3.69
3509 4381 5.288472 GGACATTTGCTTGGTATTTTTAGCG 59.712 40.000 0.00 0.00 36.43 4.26
3524 4396 5.065218 AGACGAATCATAGTTGGACATTTGC 59.935 40.000 0.00 0.00 0.00 3.68
3531 4403 7.227873 AGAGATAGAGACGAATCATAGTTGGA 58.772 38.462 0.00 0.00 0.00 3.53
3584 4456 1.813786 ACCGAGAGAGTAGTTGTCTGC 59.186 52.381 0.00 0.00 27.75 4.26
3586 4458 2.618559 GGGACCGAGAGAGTAGTTGTCT 60.619 54.545 0.00 0.00 30.86 3.41
3588 4460 1.075050 TGGGACCGAGAGAGTAGTTGT 59.925 52.381 0.00 0.00 0.00 3.32
3591 4463 2.599408 TTTGGGACCGAGAGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
3594 4466 3.838903 ACTTATTTTGGGACCGAGAGAGT 59.161 43.478 0.00 0.00 0.00 3.24
3596 4468 3.581332 ACACTTATTTTGGGACCGAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
3597 4469 3.933332 GACACTTATTTTGGGACCGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
3598 4470 3.581332 AGACACTTATTTTGGGACCGAGA 59.419 43.478 0.00 0.00 0.00 4.04
3599 4471 3.933332 GAGACACTTATTTTGGGACCGAG 59.067 47.826 0.00 0.00 0.00 4.63
3600 4472 3.325425 TGAGACACTTATTTTGGGACCGA 59.675 43.478 0.00 0.00 0.00 4.69
3601 4473 3.670625 TGAGACACTTATTTTGGGACCG 58.329 45.455 0.00 0.00 0.00 4.79
3602 4474 5.070685 AGTTGAGACACTTATTTTGGGACC 58.929 41.667 0.00 0.00 0.00 4.46
3603 4475 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3604 4476 8.934023 ATAAAGTTGAGACACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
3640 4512 9.439500 TGTCTTAGCCTTAACGTAATTTTGTAT 57.561 29.630 0.00 0.00 0.00 2.29
3641 4513 8.711457 GTGTCTTAGCCTTAACGTAATTTTGTA 58.289 33.333 0.00 0.00 0.00 2.41
3642 4514 7.443272 AGTGTCTTAGCCTTAACGTAATTTTGT 59.557 33.333 0.00 0.00 0.00 2.83
3643 4515 7.803724 AGTGTCTTAGCCTTAACGTAATTTTG 58.196 34.615 0.00 0.00 0.00 2.44
3644 4516 7.974482 AGTGTCTTAGCCTTAACGTAATTTT 57.026 32.000 0.00 0.00 0.00 1.82
3645 4517 7.974482 AAGTGTCTTAGCCTTAACGTAATTT 57.026 32.000 0.00 0.00 0.00 1.82
3646 4518 9.662947 AATAAGTGTCTTAGCCTTAACGTAATT 57.337 29.630 0.00 0.00 0.00 1.40
3647 4519 9.662947 AAATAAGTGTCTTAGCCTTAACGTAAT 57.337 29.630 0.00 0.00 0.00 1.89
3648 4520 9.143631 GAAATAAGTGTCTTAGCCTTAACGTAA 57.856 33.333 0.00 0.00 0.00 3.18
3649 4521 7.485913 CGAAATAAGTGTCTTAGCCTTAACGTA 59.514 37.037 0.00 0.00 0.00 3.57
3650 4522 6.309737 CGAAATAAGTGTCTTAGCCTTAACGT 59.690 38.462 0.00 0.00 0.00 3.99
3651 4523 6.529125 TCGAAATAAGTGTCTTAGCCTTAACG 59.471 38.462 0.00 0.00 0.00 3.18
3652 4524 7.758528 TCTCGAAATAAGTGTCTTAGCCTTAAC 59.241 37.037 0.00 0.00 0.00 2.01
3653 4525 7.758528 GTCTCGAAATAAGTGTCTTAGCCTTAA 59.241 37.037 0.00 0.00 0.00 1.85
3654 4526 7.256286 GTCTCGAAATAAGTGTCTTAGCCTTA 58.744 38.462 0.00 0.00 0.00 2.69
3655 4527 6.100668 GTCTCGAAATAAGTGTCTTAGCCTT 58.899 40.000 0.00 0.00 0.00 4.35
3656 4528 5.652518 GTCTCGAAATAAGTGTCTTAGCCT 58.347 41.667 0.00 0.00 0.00 4.58
3657 4529 4.499758 CGTCTCGAAATAAGTGTCTTAGCC 59.500 45.833 0.00 0.00 0.00 3.93
3658 4530 4.499758 CCGTCTCGAAATAAGTGTCTTAGC 59.500 45.833 0.00 0.00 0.00 3.09
3659 4531 5.877031 TCCGTCTCGAAATAAGTGTCTTAG 58.123 41.667 0.00 0.00 0.00 2.18
3660 4532 5.645067 TCTCCGTCTCGAAATAAGTGTCTTA 59.355 40.000 0.00 0.00 0.00 2.10
3661 4533 4.458295 TCTCCGTCTCGAAATAAGTGTCTT 59.542 41.667 0.00 0.00 0.00 3.01
3662 4534 4.008330 TCTCCGTCTCGAAATAAGTGTCT 58.992 43.478 0.00 0.00 0.00 3.41
3663 4535 4.094590 TCTCTCCGTCTCGAAATAAGTGTC 59.905 45.833 0.00 0.00 0.00 3.67
3664 4536 4.008330 TCTCTCCGTCTCGAAATAAGTGT 58.992 43.478 0.00 0.00 0.00 3.55
3665 4537 4.095185 ACTCTCTCCGTCTCGAAATAAGTG 59.905 45.833 0.00 0.00 0.00 3.16
3666 4538 4.263435 ACTCTCTCCGTCTCGAAATAAGT 58.737 43.478 0.00 0.00 0.00 2.24
3667 4539 4.886247 ACTCTCTCCGTCTCGAAATAAG 57.114 45.455 0.00 0.00 0.00 1.73
3668 4540 8.341173 GTTTATACTCTCTCCGTCTCGAAATAA 58.659 37.037 0.00 0.00 0.00 1.40
3669 4541 7.714377 AGTTTATACTCTCTCCGTCTCGAAATA 59.286 37.037 0.00 0.00 0.00 1.40
3670 4542 6.543100 AGTTTATACTCTCTCCGTCTCGAAAT 59.457 38.462 0.00 0.00 0.00 2.17
3671 4543 5.879223 AGTTTATACTCTCTCCGTCTCGAAA 59.121 40.000 0.00 0.00 0.00 3.46
3672 4544 5.426504 AGTTTATACTCTCTCCGTCTCGAA 58.573 41.667 0.00 0.00 0.00 3.71
3673 4545 5.021033 AGTTTATACTCTCTCCGTCTCGA 57.979 43.478 0.00 0.00 0.00 4.04
3674 4546 5.738118 AAGTTTATACTCTCTCCGTCTCG 57.262 43.478 0.00 0.00 31.99 4.04
3675 4547 6.095160 TCCAAAGTTTATACTCTCTCCGTCTC 59.905 42.308 0.00 0.00 31.99 3.36
3676 4548 5.950549 TCCAAAGTTTATACTCTCTCCGTCT 59.049 40.000 0.00 0.00 31.99 4.18
3677 4549 6.205101 TCCAAAGTTTATACTCTCTCCGTC 57.795 41.667 0.00 0.00 31.99 4.79
3678 4550 6.793505 ATCCAAAGTTTATACTCTCTCCGT 57.206 37.500 0.00 0.00 31.99 4.69
3679 4551 9.595823 TTTAATCCAAAGTTTATACTCTCTCCG 57.404 33.333 0.00 0.00 31.99 4.63
3702 4574 9.807921 AAACCAATCATACCTTCTTCTTCTTTA 57.192 29.630 0.00 0.00 0.00 1.85
3708 4580 7.264294 AGAGAAACCAATCATACCTTCTTCT 57.736 36.000 0.00 0.00 0.00 2.85
3714 4586 6.600822 CACATCAAGAGAAACCAATCATACCT 59.399 38.462 0.00 0.00 0.00 3.08
3715 4587 6.183360 CCACATCAAGAGAAACCAATCATACC 60.183 42.308 0.00 0.00 0.00 2.73
3717 4589 6.599244 GTCCACATCAAGAGAAACCAATCATA 59.401 38.462 0.00 0.00 0.00 2.15
3724 4598 2.076863 CGGTCCACATCAAGAGAAACC 58.923 52.381 0.00 0.00 0.00 3.27
3752 4626 3.706086 ACCAGGTCTGAACTGCAATTTTT 59.294 39.130 17.24 0.00 34.65 1.94
3753 4627 3.068590 CACCAGGTCTGAACTGCAATTTT 59.931 43.478 17.24 0.00 34.65 1.82
3754 4628 2.624838 CACCAGGTCTGAACTGCAATTT 59.375 45.455 17.24 0.00 34.65 1.82
3755 4629 2.233271 CACCAGGTCTGAACTGCAATT 58.767 47.619 17.24 0.00 34.65 2.32
3756 4630 1.901591 CACCAGGTCTGAACTGCAAT 58.098 50.000 17.24 2.02 34.65 3.56
3757 4631 0.819259 GCACCAGGTCTGAACTGCAA 60.819 55.000 17.24 0.00 34.65 4.08
3758 4632 1.227943 GCACCAGGTCTGAACTGCA 60.228 57.895 17.24 0.00 34.65 4.41
3759 4633 1.072159 AGCACCAGGTCTGAACTGC 59.928 57.895 17.24 7.24 34.65 4.40
3793 4667 5.296151 TGAACTCCACTCTGTTTCTCAAT 57.704 39.130 0.00 0.00 0.00 2.57
3801 4675 4.160329 TCCAAGTATGAACTCCACTCTGT 58.840 43.478 0.00 0.00 33.75 3.41
3802 4676 4.808414 TCCAAGTATGAACTCCACTCTG 57.192 45.455 0.00 0.00 33.75 3.35
3808 4682 5.998363 ACTGAAACTTCCAAGTATGAACTCC 59.002 40.000 0.00 0.00 38.57 3.85
3836 4710 2.031682 GCACGCATGAGAACAGAGTTTT 60.032 45.455 2.50 0.00 0.00 2.43
3842 4716 0.733909 TCTCGCACGCATGAGAACAG 60.734 55.000 2.50 0.00 38.25 3.16
3846 4720 0.038251 AACTTCTCGCACGCATGAGA 60.038 50.000 2.50 0.00 39.38 3.27
3854 4728 1.727213 GCATGCTGAAACTTCTCGCAC 60.727 52.381 11.37 0.00 37.23 5.34
3855 4729 0.518636 GCATGCTGAAACTTCTCGCA 59.481 50.000 11.37 8.64 38.16 5.10
3903 4777 1.647545 AATGCGTGCCGGTCAGAATG 61.648 55.000 1.90 0.00 37.54 2.67
3904 4778 1.377202 AATGCGTGCCGGTCAGAAT 60.377 52.632 1.90 0.00 0.00 2.40
3905 4779 2.031919 AATGCGTGCCGGTCAGAA 59.968 55.556 1.90 0.00 0.00 3.02
3906 4780 2.741985 CAATGCGTGCCGGTCAGA 60.742 61.111 1.90 0.00 0.00 3.27
3907 4781 2.128853 AAACAATGCGTGCCGGTCAG 62.129 55.000 1.90 0.00 0.00 3.51
3908 4782 1.729470 AAAACAATGCGTGCCGGTCA 61.729 50.000 1.90 0.00 0.00 4.02
3909 4783 0.596341 AAAAACAATGCGTGCCGGTC 60.596 50.000 1.90 0.00 0.00 4.79
3910 4784 1.439644 AAAAACAATGCGTGCCGGT 59.560 47.368 1.90 0.00 0.00 5.28
3911 4785 4.334837 AAAAACAATGCGTGCCGG 57.665 50.000 0.00 0.00 0.00 6.13
3937 4811 2.738480 CCGGTCACTCCCGTCAAA 59.262 61.111 0.00 0.00 46.66 2.69
4065 4940 9.057089 AGATTCTTTTGACTTAACACAACCTAG 57.943 33.333 0.00 0.00 0.00 3.02
4099 4974 2.781174 TGAAGGGGTCAAAGTTGGTACT 59.219 45.455 0.00 0.00 35.68 2.73
4109 4984 1.529744 AGAAGGGTTGAAGGGGTCAA 58.470 50.000 0.00 0.00 44.20 3.18
4120 4995 9.811995 GTTTTAATTTTCAGTGTAAGAAGGGTT 57.188 29.630 0.00 0.00 0.00 4.11
4121 4996 8.418662 GGTTTTAATTTTCAGTGTAAGAAGGGT 58.581 33.333 0.00 0.00 0.00 4.34
4122 4997 8.417884 TGGTTTTAATTTTCAGTGTAAGAAGGG 58.582 33.333 0.00 0.00 0.00 3.95
4123 4998 9.810545 TTGGTTTTAATTTTCAGTGTAAGAAGG 57.189 29.630 0.00 0.00 0.00 3.46
4145 5020 6.716284 TGTGGAAGAAAAAGGAATTTTTGGT 58.284 32.000 3.60 0.00 41.27 3.67
4146 5021 7.622893 TTGTGGAAGAAAAAGGAATTTTTGG 57.377 32.000 3.60 0.00 41.27 3.28
4154 5029 8.263640 TGATTTCATTTTGTGGAAGAAAAAGGA 58.736 29.630 0.00 0.00 42.60 3.36
4224 5100 0.601841 ACCGGGTGTTCGTTCATGAC 60.602 55.000 6.32 0.00 0.00 3.06
4260 5136 3.826157 TGCCACTTGTTAGAGGAATTTGG 59.174 43.478 0.00 0.00 34.34 3.28
4261 5137 5.452078 TTGCCACTTGTTAGAGGAATTTG 57.548 39.130 0.00 0.00 34.34 2.32
4262 5138 4.021981 GCTTGCCACTTGTTAGAGGAATTT 60.022 41.667 0.00 0.00 34.34 1.82
4267 5143 1.896220 TGCTTGCCACTTGTTAGAGG 58.104 50.000 0.00 0.00 35.44 3.69
4270 5146 7.141363 GGAATATAATGCTTGCCACTTGTTAG 58.859 38.462 0.00 0.00 0.00 2.34
4275 5151 5.893255 TCTTGGAATATAATGCTTGCCACTT 59.107 36.000 0.00 0.00 0.00 3.16
4320 5196 9.191995 CGCCCTTTATAATATGATTTGTTTTCC 57.808 33.333 0.00 0.00 0.00 3.13
4321 5197 9.959749 TCGCCCTTTATAATATGATTTGTTTTC 57.040 29.630 0.00 0.00 0.00 2.29
4322 5198 9.965824 CTCGCCCTTTATAATATGATTTGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
4323 5199 8.576442 CCTCGCCCTTTATAATATGATTTGTTT 58.424 33.333 0.00 0.00 0.00 2.83
4324 5200 7.724061 ACCTCGCCCTTTATAATATGATTTGTT 59.276 33.333 0.00 0.00 0.00 2.83
4325 5201 7.231467 ACCTCGCCCTTTATAATATGATTTGT 58.769 34.615 0.00 0.00 0.00 2.83
4326 5202 7.687941 ACCTCGCCCTTTATAATATGATTTG 57.312 36.000 0.00 0.00 0.00 2.32
4327 5203 9.802039 TTAACCTCGCCCTTTATAATATGATTT 57.198 29.630 0.00 0.00 0.00 2.17
4328 5204 9.227777 GTTAACCTCGCCCTTTATAATATGATT 57.772 33.333 0.00 0.00 0.00 2.57
4329 5205 8.603304 AGTTAACCTCGCCCTTTATAATATGAT 58.397 33.333 0.88 0.00 0.00 2.45
4330 5206 7.970102 AGTTAACCTCGCCCTTTATAATATGA 58.030 34.615 0.88 0.00 0.00 2.15
4331 5207 7.876068 TGAGTTAACCTCGCCCTTTATAATATG 59.124 37.037 0.88 0.00 43.64 1.78
4332 5208 7.970102 TGAGTTAACCTCGCCCTTTATAATAT 58.030 34.615 0.88 0.00 43.64 1.28
4333 5209 7.288389 TCTGAGTTAACCTCGCCCTTTATAATA 59.712 37.037 0.88 0.00 43.64 0.98
4334 5210 6.099269 TCTGAGTTAACCTCGCCCTTTATAAT 59.901 38.462 0.88 0.00 43.64 1.28
4335 5211 5.422970 TCTGAGTTAACCTCGCCCTTTATAA 59.577 40.000 0.88 0.00 43.64 0.98
4336 5212 4.957954 TCTGAGTTAACCTCGCCCTTTATA 59.042 41.667 0.88 0.00 43.64 0.98
4337 5213 3.773119 TCTGAGTTAACCTCGCCCTTTAT 59.227 43.478 0.88 0.00 43.64 1.40
4338 5214 3.167485 TCTGAGTTAACCTCGCCCTTTA 58.833 45.455 0.88 0.00 43.64 1.85
4339 5215 1.975680 TCTGAGTTAACCTCGCCCTTT 59.024 47.619 0.88 0.00 43.64 3.11
4340 5216 1.640917 TCTGAGTTAACCTCGCCCTT 58.359 50.000 0.88 0.00 43.64 3.95
4341 5217 1.275573 GTTCTGAGTTAACCTCGCCCT 59.724 52.381 0.88 0.00 43.64 5.19
4342 5218 1.675116 GGTTCTGAGTTAACCTCGCCC 60.675 57.143 0.88 0.00 43.64 6.13
4343 5219 1.723220 GGTTCTGAGTTAACCTCGCC 58.277 55.000 0.88 0.00 43.64 5.54
4344 5220 1.347320 CGGTTCTGAGTTAACCTCGC 58.653 55.000 0.88 0.00 43.55 5.03
4345 5221 1.347320 GCGGTTCTGAGTTAACCTCG 58.653 55.000 0.88 0.00 43.55 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.