Multiple sequence alignment - TraesCS1A01G400500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G400500 chr1A 100.000 5401 0 0 1 5401 564396500 564391100 0.000000e+00 9974.0
1 TraesCS1A01G400500 chr1A 88.732 71 8 0 4831 4901 570588102 570588032 2.680000e-13 87.9
2 TraesCS1A01G400500 chr1A 94.118 51 2 1 4248 4297 175176274 175176224 5.800000e-10 76.8
3 TraesCS1A01G400500 chr1B 90.973 1285 103 11 2015 3289 654029076 654027795 0.000000e+00 1718.0
4 TraesCS1A01G400500 chr1B 93.122 727 34 8 1 722 654030921 654030206 0.000000e+00 1051.0
5 TraesCS1A01G400500 chr1B 90.652 460 35 5 866 1317 654030037 654029578 5.980000e-169 604.0
6 TraesCS1A01G400500 chr1B 83.812 661 69 24 3320 3976 654027699 654027073 1.300000e-165 593.0
7 TraesCS1A01G400500 chr1B 94.415 376 17 3 4332 4705 654027074 654026701 4.690000e-160 575.0
8 TraesCS1A01G400500 chr1B 93.939 264 13 3 4263 4525 654023010 654022749 3.920000e-106 396.0
9 TraesCS1A01G400500 chr1B 91.228 285 22 1 4831 5112 654021139 654020855 8.490000e-103 385.0
10 TraesCS1A01G400500 chr1B 90.592 287 22 2 4831 5112 654026403 654026117 5.110000e-100 375.0
11 TraesCS1A01G400500 chr1B 91.949 236 14 5 1749 1979 654029295 654029060 5.220000e-85 326.0
12 TraesCS1A01G400500 chr1B 94.845 194 7 3 4512 4705 654021560 654021370 3.160000e-77 300.0
13 TraesCS1A01G400500 chr1B 83.180 327 20 5 5110 5401 654020806 654020480 3.210000e-67 267.0
14 TraesCS1A01G400500 chr1B 86.047 258 16 11 1391 1628 654029583 654029326 5.370000e-65 259.0
15 TraesCS1A01G400500 chr1B 84.831 178 13 4 5223 5386 654025533 654025356 3.350000e-37 167.0
16 TraesCS1A01G400500 chr1B 88.406 69 8 0 4833 4901 30799524 30799592 3.470000e-12 84.2
17 TraesCS1A01G400500 chr1B 86.667 75 10 0 4832 4906 95369344 95369418 3.470000e-12 84.2
18 TraesCS1A01G400500 chr1B 95.918 49 2 0 4256 4304 282135824 282135776 4.480000e-11 80.5
19 TraesCS1A01G400500 chr1D 90.257 1283 90 18 2015 3290 470731118 470729864 0.000000e+00 1644.0
20 TraesCS1A01G400500 chr1D 91.173 861 57 10 1 858 470733141 470732297 0.000000e+00 1151.0
21 TraesCS1A01G400500 chr1D 90.196 816 45 11 848 1628 470732182 470731367 0.000000e+00 1031.0
22 TraesCS1A01G400500 chr1D 86.610 941 78 22 3309 4237 470729775 470728871 0.000000e+00 996.0
23 TraesCS1A01G400500 chr1D 96.341 410 15 0 4703 5112 470728412 470728003 0.000000e+00 675.0
24 TraesCS1A01G400500 chr1D 94.388 392 19 2 4316 4705 470728846 470728456 2.780000e-167 599.0
25 TraesCS1A01G400500 chr1D 98.973 292 3 0 5110 5401 470727954 470727663 1.720000e-144 523.0
26 TraesCS1A01G400500 chr1D 94.500 200 11 0 1780 1979 470731301 470731102 5.250000e-80 309.0
27 TraesCS1A01G400500 chr1D 97.826 46 1 0 4252 4297 111101231 111101276 4.480000e-11 80.5
28 TraesCS1A01G400500 chr1D 97.778 45 1 0 1978 2022 106321837 106321881 1.610000e-10 78.7
29 TraesCS1A01G400500 chr1D 86.111 72 10 0 4830 4901 111856658 111856587 1.610000e-10 78.7
30 TraesCS1A01G400500 chr2D 87.019 624 68 10 1 616 25025104 25025722 0.000000e+00 691.0
31 TraesCS1A01G400500 chr2D 89.744 78 8 0 4744 4821 643817475 643817552 3.440000e-17 100.0
32 TraesCS1A01G400500 chr2D 95.918 49 2 0 4248 4296 535105617 535105569 4.480000e-11 80.5
33 TraesCS1A01G400500 chr2A 84.420 629 63 13 1 616 27500221 27500827 2.170000e-163 586.0
34 TraesCS1A01G400500 chr2A 88.444 225 22 4 1749 1969 83250151 83250375 8.920000e-68 268.0
35 TraesCS1A01G400500 chr2A 89.202 213 21 2 1370 1581 83249848 83250059 1.150000e-66 265.0
36 TraesCS1A01G400500 chr3B 88.000 475 43 9 2385 2847 763523913 763523441 2.840000e-152 549.0
37 TraesCS1A01G400500 chr3B 91.732 254 16 3 2015 2263 16302729 16302476 1.110000e-91 348.0
38 TraesCS1A01G400500 chr3B 80.000 495 62 21 1292 1774 763531066 763530597 1.120000e-86 331.0
39 TraesCS1A01G400500 chr3B 91.489 235 16 4 1749 1979 16302947 16302713 2.430000e-83 320.0
40 TraesCS1A01G400500 chr3B 86.447 273 23 6 1370 1628 16303250 16302978 2.460000e-73 287.0
41 TraesCS1A01G400500 chr3B 91.954 174 10 2 2094 2263 224215317 224215144 1.940000e-59 241.0
42 TraesCS1A01G400500 chr3B 87.192 203 17 7 2015 2210 763524964 763524764 7.040000e-54 222.0
43 TraesCS1A01G400500 chr3B 89.385 179 16 3 1801 1977 763525127 763524950 7.040000e-54 222.0
44 TraesCS1A01G400500 chr3B 86.842 114 11 1 1755 1864 196142776 196142889 2.040000e-24 124.0
45 TraesCS1A01G400500 chr3B 89.157 83 8 1 4745 4826 559321944 559322026 9.570000e-18 102.0
46 TraesCS1A01G400500 chr3B 100.000 51 0 0 1929 1979 196142889 196142939 1.600000e-15 95.3
47 TraesCS1A01G400500 chr7B 91.322 242 17 2 2026 2263 176806795 176806554 1.450000e-85 327.0
48 TraesCS1A01G400500 chr7B 88.085 235 24 1 1749 1979 176807025 176806791 5.330000e-70 276.0
49 TraesCS1A01G400500 chr7B 86.458 192 12 6 1451 1628 176807247 176807056 1.190000e-46 198.0
50 TraesCS1A01G400500 chr7B 95.833 48 1 1 1978 2024 525002766 525002719 5.800000e-10 76.8
51 TraesCS1A01G400500 chrUn 88.298 188 15 5 2030 2210 287139874 287139687 9.110000e-53 219.0
52 TraesCS1A01G400500 chrUn 88.298 188 15 5 2030 2210 287146042 287145855 9.110000e-53 219.0
53 TraesCS1A01G400500 chrUn 87.958 191 16 5 2027 2210 293606920 293607110 9.110000e-53 219.0
54 TraesCS1A01G400500 chrUn 92.727 55 4 0 1292 1346 287140624 287140570 4.480000e-11 80.5
55 TraesCS1A01G400500 chrUn 92.727 55 4 0 1292 1346 287146792 287146738 4.480000e-11 80.5
56 TraesCS1A01G400500 chrUn 91.379 58 5 0 1289 1346 293606170 293606227 4.480000e-11 80.5
57 TraesCS1A01G400500 chr6B 92.941 85 6 0 1780 1864 236300620 236300536 2.040000e-24 124.0
58 TraesCS1A01G400500 chr6B 100.000 51 0 0 1929 1979 236300536 236300486 1.600000e-15 95.3
59 TraesCS1A01G400500 chr6B 87.324 71 9 0 4831 4901 665384816 665384746 1.250000e-11 82.4
60 TraesCS1A01G400500 chr6B 97.826 46 1 0 1978 2023 42749492 42749447 4.480000e-11 80.5
61 TraesCS1A01G400500 chr6B 97.778 45 1 0 1978 2022 214023885 214023841 1.610000e-10 78.7
62 TraesCS1A01G400500 chr5B 89.773 88 9 0 4743 4830 679802597 679802510 4.420000e-21 113.0
63 TraesCS1A01G400500 chr4B 91.026 78 7 0 4744 4821 575046335 575046258 7.400000e-19 106.0
64 TraesCS1A01G400500 chr5D 87.356 87 8 1 4744 4830 285841514 285841431 4.450000e-16 97.1
65 TraesCS1A01G400500 chr5D 97.826 46 0 1 1975 2020 3563144 3563100 1.610000e-10 78.7
66 TraesCS1A01G400500 chr3D 87.805 82 10 0 4749 4830 3219217 3219136 4.450000e-16 97.1
67 TraesCS1A01G400500 chr3D 97.727 44 1 0 1978 2021 612287714 612287671 5.800000e-10 76.8
68 TraesCS1A01G400500 chr3A 86.747 83 9 2 4749 4830 7797164 7797083 2.070000e-14 91.6
69 TraesCS1A01G400500 chr3A 88.889 72 6 2 4831 4901 31669015 31668945 2.680000e-13 87.9
70 TraesCS1A01G400500 chr3A 100.000 43 0 0 1978 2020 690963356 690963398 4.480000e-11 80.5
71 TraesCS1A01G400500 chr3A 89.655 58 4 2 4248 4304 195460631 195460687 7.500000e-09 73.1
72 TraesCS1A01G400500 chr3A 95.122 41 1 1 1989 2028 745380645 745380685 4.520000e-06 63.9
73 TraesCS1A01G400500 chr4A 86.585 82 9 2 4750 4830 552822520 552822440 7.450000e-14 89.8
74 TraesCS1A01G400500 chr4A 96.875 32 1 0 4400 4431 164727687 164727656 3.000000e-03 54.7
75 TraesCS1A01G400500 chr7A 94.231 52 3 0 4252 4303 564256731 564256680 4.480000e-11 80.5
76 TraesCS1A01G400500 chr7A 95.833 48 1 1 1979 2026 3007298 3007252 5.800000e-10 76.8
77 TraesCS1A01G400500 chr6D 97.778 45 1 0 1978 2022 460808327 460808283 1.610000e-10 78.7
78 TraesCS1A01G400500 chr5A 92.308 52 4 0 4248 4299 596007026 596007077 2.090000e-09 75.0
79 TraesCS1A01G400500 chr4D 88.889 63 2 4 4248 4306 37052104 37052043 7.500000e-09 73.1
80 TraesCS1A01G400500 chr6A 96.875 32 1 0 4400 4431 577698823 577698792 3.000000e-03 54.7
81 TraesCS1A01G400500 chr2B 96.875 32 1 0 4400 4431 579959362 579959331 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G400500 chr1A 564391100 564396500 5400 True 9974.000000 9974 100.000000 1 5401 1 chr1A.!!$R2 5400
1 TraesCS1A01G400500 chr1B 654020480 654030921 10441 True 539.692308 1718 89.968077 1 5401 13 chr1B.!!$R2 5400
2 TraesCS1A01G400500 chr1D 470727663 470733141 5478 True 866.000000 1644 92.804750 1 5401 8 chr1D.!!$R2 5400
3 TraesCS1A01G400500 chr2D 25025104 25025722 618 False 691.000000 691 87.019000 1 616 1 chr2D.!!$F1 615
4 TraesCS1A01G400500 chr2A 27500221 27500827 606 False 586.000000 586 84.420000 1 616 1 chr2A.!!$F1 615
5 TraesCS1A01G400500 chr2A 83249848 83250375 527 False 266.500000 268 88.823000 1370 1969 2 chr2A.!!$F2 599
6 TraesCS1A01G400500 chr3B 763523441 763525127 1686 True 331.000000 549 88.192333 1801 2847 3 chr3B.!!$R4 1046
7 TraesCS1A01G400500 chr3B 16302476 16303250 774 True 318.333333 348 89.889333 1370 2263 3 chr3B.!!$R3 893
8 TraesCS1A01G400500 chr7B 176806554 176807247 693 True 267.000000 327 88.621667 1451 2263 3 chr7B.!!$R2 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 1.154205 GCGTGATGGACATCTTCGGG 61.154 60.0 21.29 7.76 38.60 5.14 F
1389 1555 0.034186 TGGATGGATGGTGCAAGTCC 60.034 55.0 6.38 6.38 0.00 3.85 F
2535 3413 0.116940 TTACTAACCTCCCGGTGGGT 59.883 55.0 14.21 11.92 44.73 4.51 F
3537 4501 0.029035 GCGGAATGATGAGCAAGCAG 59.971 55.0 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1915 0.106918 TGCCCAGTCGGTTTCAAACT 60.107 50.000 0.0 0.0 0.00 2.66 R
3041 3932 1.079543 CGGAAGGCTCAGAGTGTGG 60.080 63.158 0.0 0.0 0.00 4.17 R
3825 4801 0.250513 GGACACATTCCTCGAAGCCT 59.749 55.000 0.0 0.0 41.95 4.58 R
4804 10849 1.272769 GACCTAGCACGACAACTTCCT 59.727 52.381 0.0 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 200 3.087253 CCGACCTACATGGGCCCA 61.087 66.667 30.92 30.92 42.31 5.36
370 371 1.154205 GCGTGATGGACATCTTCGGG 61.154 60.000 21.29 7.76 38.60 5.14
406 416 2.362120 GACTTCTCGTCCGGGGGA 60.362 66.667 0.00 0.00 36.62 4.81
616 629 1.234615 TGCGCAAGTAAGGCAAGACC 61.235 55.000 8.16 0.00 41.68 3.85
620 633 1.234821 CAAGTAAGGCAAGACCGCAA 58.765 50.000 0.00 0.00 46.52 4.85
673 686 6.533012 CGGATATGAATCTCATGGTCATGTAC 59.467 42.308 10.32 5.82 37.70 2.90
707 722 7.493971 AGTTCAGACAAAATTCGATCTCTATGG 59.506 37.037 0.00 0.00 0.00 2.74
711 726 6.204301 AGACAAAATTCGATCTCTATGGCATG 59.796 38.462 10.98 0.16 0.00 4.06
724 739 6.208402 TCTCTATGGCATGTTTTTAAGCAACA 59.792 34.615 10.98 5.12 38.49 3.33
728 743 6.297694 TGGCATGTTTTTAAGCAACAATTC 57.702 33.333 6.43 1.72 37.67 2.17
731 746 6.418141 GCATGTTTTTAAGCAACAATTCGTT 58.582 32.000 6.43 0.00 37.67 3.85
734 749 9.352163 CATGTTTTTAAGCAACAATTCGTTAAC 57.648 29.630 6.43 0.00 37.67 2.01
735 750 7.896894 TGTTTTTAAGCAACAATTCGTTAACC 58.103 30.769 0.00 0.00 35.52 2.85
736 751 7.760340 TGTTTTTAAGCAACAATTCGTTAACCT 59.240 29.630 0.00 0.00 35.52 3.50
743 758 7.250569 AGCAACAATTCGTTAACCTTATCATG 58.749 34.615 0.00 0.00 35.52 3.07
747 762 7.930217 ACAATTCGTTAACCTTATCATGGATG 58.070 34.615 0.00 0.00 0.00 3.51
766 781 7.566760 TGGATGATAATGTTATCGTGCTTTT 57.433 32.000 20.09 0.00 43.63 2.27
785 800 2.768253 TCTCGCTGATTTGTGGATGT 57.232 45.000 0.00 0.00 0.00 3.06
790 805 5.647658 TCTCGCTGATTTGTGGATGTTATTT 59.352 36.000 0.00 0.00 0.00 1.40
794 809 6.536688 GCTGATTTGTGGATGTTATTTTTGC 58.463 36.000 0.00 0.00 0.00 3.68
796 811 7.622672 GCTGATTTGTGGATGTTATTTTTGCTG 60.623 37.037 0.00 0.00 0.00 4.41
797 812 5.921004 TTTGTGGATGTTATTTTTGCTGC 57.079 34.783 0.00 0.00 0.00 5.25
800 815 5.229423 TGTGGATGTTATTTTTGCTGCTTC 58.771 37.500 0.00 0.00 0.00 3.86
801 816 4.627035 GTGGATGTTATTTTTGCTGCTTCC 59.373 41.667 0.00 0.00 0.00 3.46
803 818 5.011943 TGGATGTTATTTTTGCTGCTTCCTT 59.988 36.000 0.00 0.00 0.00 3.36
804 819 5.578336 GGATGTTATTTTTGCTGCTTCCTTC 59.422 40.000 0.00 0.00 0.00 3.46
806 821 6.160576 TGTTATTTTTGCTGCTTCCTTCTT 57.839 33.333 0.00 0.00 0.00 2.52
807 822 5.984926 TGTTATTTTTGCTGCTTCCTTCTTG 59.015 36.000 0.00 0.00 0.00 3.02
808 823 4.942761 ATTTTTGCTGCTTCCTTCTTGA 57.057 36.364 0.00 0.00 0.00 3.02
809 824 4.942761 TTTTTGCTGCTTCCTTCTTGAT 57.057 36.364 0.00 0.00 0.00 2.57
810 825 3.928727 TTTGCTGCTTCCTTCTTGATG 57.071 42.857 0.00 0.00 0.00 3.07
811 826 2.574006 TGCTGCTTCCTTCTTGATGT 57.426 45.000 0.00 0.00 0.00 3.06
813 828 4.019792 TGCTGCTTCCTTCTTGATGTAA 57.980 40.909 0.00 0.00 0.00 2.41
815 830 3.753272 GCTGCTTCCTTCTTGATGTAACA 59.247 43.478 0.00 0.00 0.00 2.41
816 831 4.397417 GCTGCTTCCTTCTTGATGTAACAT 59.603 41.667 0.00 0.00 0.00 2.71
817 832 5.105997 GCTGCTTCCTTCTTGATGTAACATT 60.106 40.000 0.00 0.00 0.00 2.71
821 836 7.119699 TGCTTCCTTCTTGATGTAACATTAGTG 59.880 37.037 0.00 0.00 0.00 2.74
822 837 7.414540 GCTTCCTTCTTGATGTAACATTAGTGG 60.415 40.741 0.00 0.00 0.00 4.00
830 845 9.214957 CTTGATGTAACATTAGTGGTTCAGTTA 57.785 33.333 0.00 0.00 0.00 2.24
844 859 5.105146 TGGTTCAGTTATTTTTGCCAAGTGT 60.105 36.000 0.00 0.00 0.00 3.55
861 876 7.430992 CCAAGTGTGGTATTCAGATGATATG 57.569 40.000 0.00 0.00 40.42 1.78
864 1007 7.855784 AGTGTGGTATTCAGATGATATGGTA 57.144 36.000 0.00 0.00 0.00 3.25
868 1011 9.025041 TGTGGTATTCAGATGATATGGTAGTAG 57.975 37.037 0.00 0.00 0.00 2.57
982 1140 6.278172 TGCAAGATAGCATATCTACTCTGG 57.722 41.667 0.00 0.00 40.11 3.86
985 1143 6.563422 CAAGATAGCATATCTACTCTGGAGC 58.437 44.000 0.00 0.00 0.00 4.70
986 1144 5.200483 AGATAGCATATCTACTCTGGAGCC 58.800 45.833 0.00 0.00 0.00 4.70
987 1145 3.541242 AGCATATCTACTCTGGAGCCT 57.459 47.619 0.00 0.00 0.00 4.58
989 1147 2.495669 GCATATCTACTCTGGAGCCTCC 59.504 54.545 2.98 2.98 36.96 4.30
1035 1196 4.959210 TCTCCTTATCTCTTTCACTCCCAG 59.041 45.833 0.00 0.00 0.00 4.45
1052 1215 1.000938 CCAGAAACCTTCAGCAGCAAC 60.001 52.381 0.00 0.00 0.00 4.17
1255 1421 3.130340 GGTCTCACTCTCTCCATCTTGAC 59.870 52.174 0.00 0.00 0.00 3.18
1322 1488 8.624776 TCTGATGATAGATGTAGTAGTGTGTTG 58.375 37.037 0.00 0.00 0.00 3.33
1348 1514 6.384258 TCTGTCACTAGTTCTGATAGATGC 57.616 41.667 0.00 0.00 32.65 3.91
1379 1545 2.121948 TCCCTTCAGACTGGATGGATG 58.878 52.381 3.70 0.00 34.82 3.51
1389 1555 0.034186 TGGATGGATGGTGCAAGTCC 60.034 55.000 6.38 6.38 0.00 3.85
1456 1626 8.139350 TCATTGCTTTGATATGATGGAATGTTC 58.861 33.333 0.00 0.00 37.59 3.18
1471 1641 1.649321 TGTTCCTGCTGGACTCTGAT 58.351 50.000 12.53 0.00 43.06 2.90
1568 1738 1.038681 TCACGGCTGCGGATAAGGTA 61.039 55.000 14.45 0.00 0.00 3.08
1576 1759 3.206150 CTGCGGATAAGGTAGTGCATTT 58.794 45.455 0.00 0.00 0.00 2.32
1631 1817 1.353103 CGGAGCGATGAAATGGTGC 59.647 57.895 0.00 0.00 0.00 5.01
1632 1818 1.368345 CGGAGCGATGAAATGGTGCA 61.368 55.000 0.00 0.00 0.00 4.57
1633 1819 1.027357 GGAGCGATGAAATGGTGCAT 58.973 50.000 0.00 0.00 0.00 3.96
1634 1820 2.221169 GGAGCGATGAAATGGTGCATA 58.779 47.619 0.00 0.00 0.00 3.14
1635 1821 2.618241 GGAGCGATGAAATGGTGCATAA 59.382 45.455 0.00 0.00 0.00 1.90
1636 1822 3.304257 GGAGCGATGAAATGGTGCATAAG 60.304 47.826 0.00 0.00 0.00 1.73
1637 1823 3.282021 AGCGATGAAATGGTGCATAAGT 58.718 40.909 0.00 0.00 0.00 2.24
1638 1824 3.696051 AGCGATGAAATGGTGCATAAGTT 59.304 39.130 0.00 0.00 0.00 2.66
1639 1825 4.037690 GCGATGAAATGGTGCATAAGTTC 58.962 43.478 0.00 0.00 0.00 3.01
1640 1826 4.201950 GCGATGAAATGGTGCATAAGTTCT 60.202 41.667 11.45 0.71 0.00 3.01
1641 1827 5.268544 CGATGAAATGGTGCATAAGTTCTG 58.731 41.667 11.45 0.00 0.00 3.02
1642 1828 5.065090 CGATGAAATGGTGCATAAGTTCTGA 59.935 40.000 11.45 0.00 0.00 3.27
1643 1829 6.238566 CGATGAAATGGTGCATAAGTTCTGAT 60.239 38.462 11.45 0.83 0.00 2.90
1644 1830 6.441093 TGAAATGGTGCATAAGTTCTGATC 57.559 37.500 11.45 0.00 0.00 2.92
1645 1831 6.182627 TGAAATGGTGCATAAGTTCTGATCT 58.817 36.000 11.45 0.00 0.00 2.75
1646 1832 6.317140 TGAAATGGTGCATAAGTTCTGATCTC 59.683 38.462 11.45 0.00 0.00 2.75
1647 1833 5.627182 ATGGTGCATAAGTTCTGATCTCT 57.373 39.130 0.00 0.00 0.00 3.10
1648 1834 5.426689 TGGTGCATAAGTTCTGATCTCTT 57.573 39.130 0.00 0.00 0.00 2.85
1649 1835 5.809001 TGGTGCATAAGTTCTGATCTCTTT 58.191 37.500 0.00 0.00 0.00 2.52
1650 1836 6.240894 TGGTGCATAAGTTCTGATCTCTTTT 58.759 36.000 0.00 0.00 0.00 2.27
1651 1837 6.149973 TGGTGCATAAGTTCTGATCTCTTTTG 59.850 38.462 0.00 1.53 0.00 2.44
1652 1838 6.372659 GGTGCATAAGTTCTGATCTCTTTTGA 59.627 38.462 0.00 0.00 0.00 2.69
1674 1860 9.695526 TTTGAGATTTTGATGGATAAACAACTG 57.304 29.630 0.00 0.00 0.00 3.16
1677 1863 9.132521 GAGATTTTGATGGATAAACAACTGTTG 57.867 33.333 18.44 18.44 38.44 3.33
1678 1864 8.090214 AGATTTTGATGGATAAACAACTGTTGG 58.910 33.333 23.15 6.91 38.44 3.77
1686 1872 5.066505 GGATAAACAACTGTTGGCCTATGAG 59.933 44.000 23.15 0.00 38.44 2.90
1691 1877 2.440409 ACTGTTGGCCTATGAGCTTTG 58.560 47.619 3.32 0.00 0.00 2.77
1693 1879 2.821969 CTGTTGGCCTATGAGCTTTGTT 59.178 45.455 3.32 0.00 0.00 2.83
1696 1882 1.545582 TGGCCTATGAGCTTTGTTTGC 59.454 47.619 3.32 0.00 0.00 3.68
1698 1884 1.468054 GCCTATGAGCTTTGTTTGCGG 60.468 52.381 0.00 0.00 35.28 5.69
1700 1886 3.006940 CCTATGAGCTTTGTTTGCGGTA 58.993 45.455 0.00 0.00 35.28 4.02
1701 1887 3.438781 CCTATGAGCTTTGTTTGCGGTAA 59.561 43.478 0.00 0.00 35.28 2.85
1704 1890 2.223618 TGAGCTTTGTTTGCGGTAAACC 60.224 45.455 17.16 3.93 46.44 3.27
1705 1891 2.028876 AGCTTTGTTTGCGGTAAACCT 58.971 42.857 17.16 5.95 46.44 3.50
1706 1892 2.124122 GCTTTGTTTGCGGTAAACCTG 58.876 47.619 17.16 9.36 46.44 4.00
1707 1893 2.223618 GCTTTGTTTGCGGTAAACCTGA 60.224 45.455 17.16 3.08 46.44 3.86
1708 1894 3.552068 GCTTTGTTTGCGGTAAACCTGAT 60.552 43.478 17.16 0.00 46.44 2.90
1709 1895 4.320641 GCTTTGTTTGCGGTAAACCTGATA 60.321 41.667 17.16 0.00 46.44 2.15
1710 1896 5.365403 TTTGTTTGCGGTAAACCTGATAG 57.635 39.130 17.16 0.00 46.44 2.08
1711 1897 2.745281 TGTTTGCGGTAAACCTGATAGC 59.255 45.455 17.16 0.00 46.44 2.97
1712 1898 3.007635 GTTTGCGGTAAACCTGATAGCT 58.992 45.455 10.15 0.00 42.25 3.32
1713 1899 3.343941 TTGCGGTAAACCTGATAGCTT 57.656 42.857 0.00 0.00 0.00 3.74
1714 1900 3.343941 TGCGGTAAACCTGATAGCTTT 57.656 42.857 0.00 0.00 0.00 3.51
1715 1901 3.006940 TGCGGTAAACCTGATAGCTTTG 58.993 45.455 0.00 0.00 0.00 2.77
1716 1902 2.223272 GCGGTAAACCTGATAGCTTTGC 60.223 50.000 0.00 0.00 0.00 3.68
1717 1903 3.006940 CGGTAAACCTGATAGCTTTGCA 58.993 45.455 0.00 0.00 0.00 4.08
1718 1904 3.063997 CGGTAAACCTGATAGCTTTGCAG 59.936 47.826 0.00 0.00 0.00 4.41
1719 1905 4.261801 GGTAAACCTGATAGCTTTGCAGA 58.738 43.478 10.61 0.00 0.00 4.26
1720 1906 4.095036 GGTAAACCTGATAGCTTTGCAGAC 59.905 45.833 10.61 2.85 0.00 3.51
1721 1907 3.710209 AACCTGATAGCTTTGCAGACT 57.290 42.857 10.61 0.00 0.00 3.24
1722 1908 3.710209 ACCTGATAGCTTTGCAGACTT 57.290 42.857 10.61 0.00 0.00 3.01
1723 1909 4.026356 ACCTGATAGCTTTGCAGACTTT 57.974 40.909 10.61 0.00 0.00 2.66
1724 1910 4.401925 ACCTGATAGCTTTGCAGACTTTT 58.598 39.130 10.61 0.00 0.00 2.27
1725 1911 4.829492 ACCTGATAGCTTTGCAGACTTTTT 59.171 37.500 10.61 0.00 0.00 1.94
1745 1931 4.364415 TTTTGAGTTTGAAACCGACTGG 57.636 40.909 4.14 0.00 42.84 4.00
1746 1932 1.961793 TGAGTTTGAAACCGACTGGG 58.038 50.000 4.14 0.00 40.75 4.45
1747 1933 0.591659 GAGTTTGAAACCGACTGGGC 59.408 55.000 4.14 0.00 40.62 5.36
1774 1961 4.050553 CAATGATGTTGCGTTTTCTGGTT 58.949 39.130 0.00 0.00 0.00 3.67
1776 1963 4.217754 TGATGTTGCGTTTTCTGGTTAC 57.782 40.909 0.00 0.00 0.00 2.50
1777 1964 3.628032 TGATGTTGCGTTTTCTGGTTACA 59.372 39.130 0.00 0.00 0.00 2.41
1783 1974 3.632604 TGCGTTTTCTGGTTACATTGGAA 59.367 39.130 0.00 0.00 0.00 3.53
1787 1978 5.118510 CGTTTTCTGGTTACATTGGAATTGC 59.881 40.000 0.00 0.00 0.00 3.56
1847 2038 2.920490 CGAGAAGTCTGCAAGTAGAAGC 59.080 50.000 0.00 0.00 33.76 3.86
1848 2039 3.366883 CGAGAAGTCTGCAAGTAGAAGCT 60.367 47.826 0.00 0.00 33.76 3.74
1979 2171 6.152932 AGAAGTCATTGTCAATGCAAGTTT 57.847 33.333 19.02 9.26 38.77 2.66
1980 2172 6.576185 AGAAGTCATTGTCAATGCAAGTTTT 58.424 32.000 19.02 6.41 38.77 2.43
1981 2173 7.043565 AGAAGTCATTGTCAATGCAAGTTTTT 58.956 30.769 19.02 6.66 38.77 1.94
2003 2195 8.825667 TTTTTGAATAGTTTGGATTGCTTACC 57.174 30.769 0.00 0.00 0.00 2.85
2004 2196 7.531857 TTTGAATAGTTTGGATTGCTTACCA 57.468 32.000 0.00 0.00 0.00 3.25
2005 2197 6.509418 TGAATAGTTTGGATTGCTTACCAC 57.491 37.500 0.00 0.00 35.81 4.16
2006 2198 6.007076 TGAATAGTTTGGATTGCTTACCACA 58.993 36.000 0.00 0.00 35.81 4.17
2007 2199 6.663093 TGAATAGTTTGGATTGCTTACCACAT 59.337 34.615 0.00 0.00 35.81 3.21
2008 2200 4.789012 AGTTTGGATTGCTTACCACATG 57.211 40.909 0.00 0.00 35.81 3.21
2009 2201 4.151883 AGTTTGGATTGCTTACCACATGT 58.848 39.130 0.00 0.00 35.81 3.21
2010 2202 4.022068 AGTTTGGATTGCTTACCACATGTG 60.022 41.667 19.31 19.31 35.81 3.21
2011 2203 3.153369 TGGATTGCTTACCACATGTGT 57.847 42.857 23.79 14.29 0.00 3.72
2012 2204 3.081061 TGGATTGCTTACCACATGTGTC 58.919 45.455 23.79 11.95 0.00 3.67
2013 2205 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
2014 2206 3.119849 GGATTGCTTACCACATGTGTCAC 60.120 47.826 23.79 9.40 0.00 3.67
2015 2207 2.629336 TGCTTACCACATGTGTCACA 57.371 45.000 23.79 8.40 0.00 3.58
2016 2208 3.138884 TGCTTACCACATGTGTCACAT 57.861 42.857 23.79 12.87 39.91 3.21
2025 2217 2.177394 ATGTGTCACATGGTAACGCA 57.823 45.000 17.74 11.40 37.45 5.24
2026 2218 1.954927 TGTGTCACATGGTAACGCAA 58.045 45.000 0.18 0.00 42.51 4.85
2027 2219 2.483877 ATGTGTCACATGGTAACGCAAG 59.516 45.455 17.74 0.00 37.45 4.01
2028 2220 4.054724 ATGTGTCACATGGTAACGCAAGT 61.055 43.478 17.74 0.00 46.38 3.16
2263 3104 8.100791 TCAGTACAAGTGCCTCTATTTTGTATT 58.899 33.333 0.00 0.00 36.82 1.89
2264 3105 8.177663 CAGTACAAGTGCCTCTATTTTGTATTG 58.822 37.037 0.00 4.56 36.82 1.90
2526 3404 1.927838 GCGCTTGAGCTTACTAACCTC 59.072 52.381 0.00 0.00 39.32 3.85
2533 3411 0.177373 GCTTACTAACCTCCCGGTGG 59.823 60.000 0.00 4.75 44.73 4.61
2535 3413 0.116940 TTACTAACCTCCCGGTGGGT 59.883 55.000 14.21 11.92 44.73 4.51
2552 3430 4.015872 TGGGTTAACCATTGACAGAGTC 57.984 45.455 25.71 4.71 46.80 3.36
2565 3443 6.951256 TTGACAGAGTCATAAGAAATCGTG 57.049 37.500 0.12 0.00 42.40 4.35
2609 3487 8.325997 CCAATTGTAGAGTTAACGTATGCTAAC 58.674 37.037 4.43 0.74 0.00 2.34
2629 3507 4.595762 ACTGCATTATGGGAATTGCATC 57.404 40.909 0.00 0.00 0.00 3.91
2791 3679 2.172505 TGGCCTTCACAAACTTCTCTCA 59.827 45.455 3.32 0.00 0.00 3.27
2847 3738 2.356695 CGATGCAGGCATTGAATTCTCA 59.643 45.455 14.97 0.00 39.55 3.27
2861 3752 7.984422 TTGAATTCTCATCTGAGCAAGTAAA 57.016 32.000 7.05 0.00 41.80 2.01
2862 3753 7.984422 TGAATTCTCATCTGAGCAAGTAAAA 57.016 32.000 7.05 0.00 41.80 1.52
2863 3754 8.037382 TGAATTCTCATCTGAGCAAGTAAAAG 57.963 34.615 7.05 0.00 41.80 2.27
2867 3758 7.426929 TCTCATCTGAGCAAGTAAAAGTTTC 57.573 36.000 2.21 0.00 41.80 2.78
2875 3766 8.615878 TGAGCAAGTAAAAGTTTCAGCTTATA 57.384 30.769 0.00 0.00 0.00 0.98
2877 3768 8.848474 AGCAAGTAAAAGTTTCAGCTTATAGA 57.152 30.769 0.00 0.00 0.00 1.98
2919 3810 8.810652 TTTTTGCTATTGGTTCATCTGTTTAC 57.189 30.769 0.00 0.00 0.00 2.01
2925 3816 7.497249 GCTATTGGTTCATCTGTTTACTGAGAT 59.503 37.037 0.00 0.00 0.00 2.75
2952 3843 8.877864 AACCATCATTTCTATGTGGAAACTTA 57.122 30.769 11.21 0.00 37.91 2.24
2953 3844 8.511604 ACCATCATTTCTATGTGGAAACTTAG 57.488 34.615 11.21 0.00 37.91 2.18
2958 3849 8.772250 TCATTTCTATGTGGAAACTTAGATCCT 58.228 33.333 9.41 0.00 37.91 3.24
3041 3932 4.385825 TCACATTGTCAGTAACAGTTCCC 58.614 43.478 0.00 0.00 39.58 3.97
3056 3947 0.768221 TTCCCCACACTCTGAGCCTT 60.768 55.000 4.19 0.00 0.00 4.35
3059 3950 1.079543 CCACACTCTGAGCCTTCCG 60.080 63.158 4.19 0.00 0.00 4.30
3085 3977 7.782168 GGATCAGGTATATCATCCTCTGTCATA 59.218 40.741 0.00 0.00 33.25 2.15
3086 3978 7.946381 TCAGGTATATCATCCTCTGTCATAC 57.054 40.000 0.00 0.00 30.91 2.39
3097 3989 7.343057 TCATCCTCTGTCATACATTCAGTTACT 59.657 37.037 0.00 0.00 0.00 2.24
3100 3992 7.285629 TCCTCTGTCATACATTCAGTTACTAGG 59.714 40.741 0.00 0.00 0.00 3.02
3107 3999 9.653287 TCATACATTCAGTTACTAGGTTTCTTG 57.347 33.333 0.00 0.00 0.00 3.02
3128 4020 5.826601 TGAAATGACAGTTAACAAGTGCA 57.173 34.783 8.61 6.99 35.18 4.57
3129 4021 6.389830 TGAAATGACAGTTAACAAGTGCAT 57.610 33.333 8.61 8.68 35.18 3.96
3131 4023 7.264221 TGAAATGACAGTTAACAAGTGCATTT 58.736 30.769 22.68 22.68 43.24 2.32
3134 4026 8.970691 AATGACAGTTAACAAGTGCATTTATC 57.029 30.769 8.61 0.00 36.28 1.75
3135 4027 7.744087 TGACAGTTAACAAGTGCATTTATCT 57.256 32.000 8.61 0.00 35.18 1.98
3140 4032 8.246180 CAGTTAACAAGTGCATTTATCTGGAAT 58.754 33.333 8.61 0.00 0.00 3.01
3143 4035 5.513233 ACAAGTGCATTTATCTGGAATCCT 58.487 37.500 0.00 0.00 0.00 3.24
3145 4037 6.438425 ACAAGTGCATTTATCTGGAATCCTTT 59.562 34.615 0.00 0.00 0.00 3.11
3193 4085 2.499693 AGAGCTACTTGAAGAGGAAGGC 59.500 50.000 0.00 0.00 0.00 4.35
3196 4088 1.205893 CTACTTGAAGAGGAAGGCGCT 59.794 52.381 7.64 0.00 0.00 5.92
3217 4109 4.567971 CTGATATCATCCAGACTGAAGGC 58.432 47.826 5.72 0.00 32.37 4.35
3235 4127 0.606604 GCGGGAAGTGTTCTAGTCCA 59.393 55.000 0.00 0.00 31.30 4.02
3247 4139 2.054799 TCTAGTCCAACAAAGCCTGGT 58.945 47.619 0.00 0.00 34.11 4.00
3250 4142 1.111277 GTCCAACAAAGCCTGGTGTT 58.889 50.000 0.00 0.00 41.63 3.32
3256 4148 1.064017 ACAAAGCCTGGTGTTCTTGGA 60.064 47.619 0.00 0.00 0.00 3.53
3262 4154 3.844211 AGCCTGGTGTTCTTGGACTAATA 59.156 43.478 0.00 0.00 0.00 0.98
3274 4166 6.570692 TCTTGGACTAATAGAAAAGGTAGCG 58.429 40.000 0.00 0.00 0.00 4.26
3290 4183 6.391227 AGGTAGCGCAAAAATGCTAAATAT 57.609 33.333 11.47 0.00 44.62 1.28
3291 4184 7.504924 AGGTAGCGCAAAAATGCTAAATATA 57.495 32.000 11.47 0.00 44.62 0.86
3292 4185 7.936584 AGGTAGCGCAAAAATGCTAAATATAA 58.063 30.769 11.47 0.00 44.62 0.98
3293 4186 8.076178 AGGTAGCGCAAAAATGCTAAATATAAG 58.924 33.333 11.47 0.00 44.62 1.73
3294 4187 7.860872 GGTAGCGCAAAAATGCTAAATATAAGT 59.139 33.333 11.47 0.00 44.62 2.24
3295 4188 9.872757 GTAGCGCAAAAATGCTAAATATAAGTA 57.127 29.630 11.47 0.00 44.62 2.24
3306 4269 9.923143 ATGCTAAATATAAGTATAGAACACGCA 57.077 29.630 0.00 0.00 0.00 5.24
3307 4270 9.188588 TGCTAAATATAAGTATAGAACACGCAC 57.811 33.333 0.00 0.00 0.00 5.34
3316 4279 2.455674 AGAACACGCACTATCAAGCA 57.544 45.000 0.00 0.00 0.00 3.91
3317 4280 2.069273 AGAACACGCACTATCAAGCAC 58.931 47.619 0.00 0.00 0.00 4.40
3318 4281 1.128692 GAACACGCACTATCAAGCACC 59.871 52.381 0.00 0.00 0.00 5.01
3326 4290 4.436852 CGCACTATCAAGCACCGTTATTTT 60.437 41.667 0.00 0.00 0.00 1.82
3402 4366 1.070445 GCAGCTGCATACTCCATCTCT 59.930 52.381 33.36 0.00 41.59 3.10
3432 4396 1.813337 CATACCGGTGATGTGCGCA 60.813 57.895 19.93 5.66 0.00 6.09
3499 4463 0.390603 TGCTGGCGTGGTATGTGTAC 60.391 55.000 0.00 0.00 0.00 2.90
3521 4485 1.581934 TGTGTCTCAAACTTCTGCGG 58.418 50.000 0.00 0.00 0.00 5.69
3531 4495 1.661341 ACTTCTGCGGAATGATGAGC 58.339 50.000 8.78 0.00 0.00 4.26
3536 4500 0.677414 TGCGGAATGATGAGCAAGCA 60.677 50.000 0.00 0.00 36.60 3.91
3537 4501 0.029035 GCGGAATGATGAGCAAGCAG 59.971 55.000 0.00 0.00 0.00 4.24
3543 4507 3.562343 ATGATGAGCAAGCAGTGAGAT 57.438 42.857 0.00 0.00 0.00 2.75
3544 4508 4.684484 ATGATGAGCAAGCAGTGAGATA 57.316 40.909 0.00 0.00 0.00 1.98
3545 4509 4.056092 TGATGAGCAAGCAGTGAGATAG 57.944 45.455 0.00 0.00 0.00 2.08
3546 4510 3.450096 TGATGAGCAAGCAGTGAGATAGT 59.550 43.478 0.00 0.00 0.00 2.12
3547 4511 3.242549 TGAGCAAGCAGTGAGATAGTG 57.757 47.619 0.00 0.00 0.00 2.74
3548 4512 2.564504 TGAGCAAGCAGTGAGATAGTGT 59.435 45.455 0.00 0.00 32.06 3.55
3549 4513 2.928757 GAGCAAGCAGTGAGATAGTGTG 59.071 50.000 0.00 0.00 32.06 3.82
3564 4528 5.478332 AGATAGTGTGATGTGAACTCTGTGA 59.522 40.000 0.00 0.00 0.00 3.58
3566 4530 3.132824 AGTGTGATGTGAACTCTGTGACA 59.867 43.478 0.00 0.00 0.00 3.58
3568 4532 3.132824 TGTGATGTGAACTCTGTGACAGT 59.867 43.478 12.93 0.00 32.61 3.55
3597 4561 4.473444 ACCAACACTGATCCAGAACATTT 58.527 39.130 0.45 0.00 35.18 2.32
3598 4562 4.895297 ACCAACACTGATCCAGAACATTTT 59.105 37.500 0.45 0.00 35.18 1.82
3599 4563 5.363580 ACCAACACTGATCCAGAACATTTTT 59.636 36.000 0.45 0.00 35.18 1.94
3600 4564 5.693104 CCAACACTGATCCAGAACATTTTTG 59.307 40.000 0.45 0.00 35.18 2.44
3601 4565 5.458041 ACACTGATCCAGAACATTTTTGG 57.542 39.130 0.45 0.00 35.18 3.28
3602 4566 5.139727 ACACTGATCCAGAACATTTTTGGA 58.860 37.500 0.99 0.99 44.52 3.53
3603 4567 5.010012 ACACTGATCCAGAACATTTTTGGAC 59.990 40.000 0.51 0.00 43.32 4.02
3604 4568 4.524328 ACTGATCCAGAACATTTTTGGACC 59.476 41.667 0.51 0.00 43.32 4.46
3605 4569 4.478203 TGATCCAGAACATTTTTGGACCA 58.522 39.130 0.51 0.00 43.32 4.02
3606 4570 5.085920 TGATCCAGAACATTTTTGGACCAT 58.914 37.500 0.00 0.00 43.32 3.55
3607 4571 5.543405 TGATCCAGAACATTTTTGGACCATT 59.457 36.000 0.00 0.00 43.32 3.16
3608 4572 6.723515 TGATCCAGAACATTTTTGGACCATTA 59.276 34.615 0.00 0.00 43.32 1.90
3609 4573 6.339587 TCCAGAACATTTTTGGACCATTAC 57.660 37.500 0.00 0.00 36.13 1.89
3610 4574 5.835819 TCCAGAACATTTTTGGACCATTACA 59.164 36.000 0.00 0.00 36.13 2.41
3611 4575 5.925969 CCAGAACATTTTTGGACCATTACAC 59.074 40.000 0.00 0.00 33.76 2.90
3612 4576 6.462207 CCAGAACATTTTTGGACCATTACACA 60.462 38.462 0.00 0.00 33.76 3.72
3613 4577 7.153985 CAGAACATTTTTGGACCATTACACAT 58.846 34.615 0.00 0.00 0.00 3.21
3614 4578 7.656948 CAGAACATTTTTGGACCATTACACATT 59.343 33.333 0.00 0.00 0.00 2.71
3615 4579 8.865090 AGAACATTTTTGGACCATTACACATTA 58.135 29.630 0.00 0.00 0.00 1.90
3616 4580 8.825667 AACATTTTTGGACCATTACACATTAC 57.174 30.769 0.00 0.00 0.00 1.89
3617 4581 7.957002 ACATTTTTGGACCATTACACATTACA 58.043 30.769 0.00 0.00 0.00 2.41
3618 4582 8.592809 ACATTTTTGGACCATTACACATTACAT 58.407 29.630 0.00 0.00 0.00 2.29
3619 4583 9.086336 CATTTTTGGACCATTACACATTACATC 57.914 33.333 0.00 0.00 0.00 3.06
3620 4584 8.415950 TTTTTGGACCATTACACATTACATCT 57.584 30.769 0.00 0.00 0.00 2.90
3621 4585 7.389803 TTTGGACCATTACACATTACATCTG 57.610 36.000 0.00 0.00 0.00 2.90
3622 4586 4.881273 TGGACCATTACACATTACATCTGC 59.119 41.667 0.00 0.00 0.00 4.26
3623 4587 5.126067 GGACCATTACACATTACATCTGCT 58.874 41.667 0.00 0.00 0.00 4.24
3628 4592 6.146837 CCATTACACATTACATCTGCTAGCTC 59.853 42.308 17.23 0.00 0.00 4.09
3629 4593 6.471233 TTACACATTACATCTGCTAGCTCT 57.529 37.500 17.23 0.00 0.00 4.09
3638 4602 4.202141 ACATCTGCTAGCTCTCATGACTTC 60.202 45.833 17.23 0.00 0.00 3.01
3641 4605 4.097741 TCTGCTAGCTCTCATGACTTCTTC 59.902 45.833 17.23 0.00 0.00 2.87
3642 4606 3.181492 TGCTAGCTCTCATGACTTCTTCG 60.181 47.826 17.23 0.00 0.00 3.79
3643 4607 3.181491 GCTAGCTCTCATGACTTCTTCGT 60.181 47.826 7.70 0.00 0.00 3.85
3644 4608 3.229276 AGCTCTCATGACTTCTTCGTG 57.771 47.619 0.00 0.00 42.03 4.35
3646 4610 3.006323 AGCTCTCATGACTTCTTCGTGTT 59.994 43.478 0.00 0.00 41.48 3.32
3647 4611 3.122613 GCTCTCATGACTTCTTCGTGTTG 59.877 47.826 0.00 0.00 41.48 3.33
3649 4613 2.802247 CTCATGACTTCTTCGTGTTGCA 59.198 45.455 0.00 0.00 41.48 4.08
3650 4614 3.402110 TCATGACTTCTTCGTGTTGCAT 58.598 40.909 0.00 0.00 41.48 3.96
3657 4621 4.516698 ACTTCTTCGTGTTGCATCTGAAAT 59.483 37.500 0.00 0.00 0.00 2.17
3659 4623 6.372659 ACTTCTTCGTGTTGCATCTGAAATAT 59.627 34.615 0.00 0.00 0.00 1.28
3661 4625 7.234187 TCTTCGTGTTGCATCTGAAATATAC 57.766 36.000 0.00 0.00 0.00 1.47
3662 4626 5.984233 TCGTGTTGCATCTGAAATATACC 57.016 39.130 0.00 0.00 0.00 2.73
3673 4648 7.201857 GCATCTGAAATATACCTTTTTCCTGCT 60.202 37.037 0.00 0.00 33.12 4.24
3676 4651 7.669722 TCTGAAATATACCTTTTTCCTGCTTGT 59.330 33.333 0.00 0.00 32.14 3.16
3690 4665 2.880268 CTGCTTGTTGGAACATGTGAGA 59.120 45.455 0.00 0.00 39.30 3.27
3691 4666 2.880268 TGCTTGTTGGAACATGTGAGAG 59.120 45.455 0.00 0.00 39.30 3.20
3692 4667 2.880890 GCTTGTTGGAACATGTGAGAGT 59.119 45.455 0.00 0.00 39.30 3.24
3695 4671 5.008613 GCTTGTTGGAACATGTGAGAGTTTA 59.991 40.000 0.00 0.00 39.30 2.01
3698 4674 7.202016 TGTTGGAACATGTGAGAGTTTATTC 57.798 36.000 0.00 0.00 39.30 1.75
3716 4692 3.986996 TTCATTCACAGGAGCTGATCA 57.013 42.857 0.00 0.00 35.18 2.92
3720 4696 4.163649 TCATTCACAGGAGCTGATCATCTT 59.836 41.667 0.00 0.00 35.18 2.40
3725 4701 2.699321 CAGGAGCTGATCATCTTCTCCA 59.301 50.000 23.62 0.00 44.29 3.86
3729 4705 3.106054 AGCTGATCATCTTCTCCACACT 58.894 45.455 0.00 0.00 0.00 3.55
3730 4706 3.118702 AGCTGATCATCTTCTCCACACTG 60.119 47.826 0.00 0.00 0.00 3.66
3769 4745 3.064545 GCTCTGCGATTAACAAGCTCAAT 59.935 43.478 0.00 0.00 0.00 2.57
3772 4748 4.877823 TCTGCGATTAACAAGCTCAATGAT 59.122 37.500 0.00 0.00 0.00 2.45
3781 4757 0.036105 AGCTCAATGATGTCGTGGCA 60.036 50.000 0.00 0.00 0.00 4.92
3787 4763 3.695556 TCAATGATGTCGTGGCAATGATT 59.304 39.130 0.00 0.00 0.00 2.57
3805 4781 1.841302 TTGCCGAGGTGAGGAGCATT 61.841 55.000 0.00 0.00 32.67 3.56
3825 4801 2.683933 GGAGGCTCTGGGGACGAA 60.684 66.667 15.23 0.00 0.00 3.85
3852 4828 1.221021 GGAATGTGTCCGAGGACCC 59.779 63.158 18.57 8.73 43.97 4.46
3920 4896 4.873746 TTCTCTGGACAAACTCGAGAAT 57.126 40.909 21.68 4.35 36.22 2.40
3942 4920 4.679373 TCAGTAAGGAATCAGGAGATGC 57.321 45.455 0.00 0.00 33.90 3.91
3950 4928 3.614092 GAATCAGGAGATGCAGTTCCAA 58.386 45.455 18.47 8.76 35.88 3.53
4155 5841 0.178918 AGCTAGCAGGGGTCCTATCC 60.179 60.000 18.83 0.00 29.64 2.59
4156 5842 0.471971 GCTAGCAGGGGTCCTATCCA 60.472 60.000 10.63 0.00 29.64 3.41
4157 5843 1.833332 GCTAGCAGGGGTCCTATCCAT 60.833 57.143 10.63 0.00 29.64 3.41
4158 5844 2.183679 CTAGCAGGGGTCCTATCCATC 58.816 57.143 0.00 0.00 29.64 3.51
4159 5845 0.268869 AGCAGGGGTCCTATCCATCA 59.731 55.000 0.00 0.00 29.64 3.07
4160 5846 0.398318 GCAGGGGTCCTATCCATCAC 59.602 60.000 0.00 0.00 29.64 3.06
4164 5850 1.059913 GGGTCCTATCCATCACCAGG 58.940 60.000 0.00 0.00 0.00 4.45
4165 5851 0.398318 GGTCCTATCCATCACCAGGC 59.602 60.000 0.00 0.00 0.00 4.85
4166 5852 0.034059 GTCCTATCCATCACCAGGCG 59.966 60.000 0.00 0.00 0.00 5.52
4167 5853 1.121407 TCCTATCCATCACCAGGCGG 61.121 60.000 0.00 0.00 38.77 6.13
4178 5864 2.742372 CAGGCGGTCAAGTTCGGG 60.742 66.667 0.00 0.00 0.00 5.14
4237 8616 3.617263 CCAAGCGTCCAACTAATGTCTAC 59.383 47.826 0.00 0.00 0.00 2.59
4238 8617 3.146618 AGCGTCCAACTAATGTCTACG 57.853 47.619 0.00 0.00 0.00 3.51
4239 8618 2.751259 AGCGTCCAACTAATGTCTACGA 59.249 45.455 0.00 0.00 31.56 3.43
4240 8619 3.380637 AGCGTCCAACTAATGTCTACGAT 59.619 43.478 0.00 0.00 31.56 3.73
4241 8620 4.110482 GCGTCCAACTAATGTCTACGATT 58.890 43.478 0.00 0.00 31.56 3.34
4243 8622 5.100259 CGTCCAACTAATGTCTACGATTGT 58.900 41.667 0.00 0.00 31.56 2.71
4244 8623 5.004440 CGTCCAACTAATGTCTACGATTGTG 59.996 44.000 0.00 0.00 31.56 3.33
4245 8624 5.867716 GTCCAACTAATGTCTACGATTGTGT 59.132 40.000 0.00 0.00 0.00 3.72
4246 8625 6.367969 GTCCAACTAATGTCTACGATTGTGTT 59.632 38.462 0.00 0.00 0.00 3.32
4247 8626 6.932400 TCCAACTAATGTCTACGATTGTGTTT 59.068 34.615 0.00 0.00 0.00 2.83
4248 8627 8.089597 TCCAACTAATGTCTACGATTGTGTTTA 58.910 33.333 0.00 0.00 0.00 2.01
4249 8628 8.166706 CCAACTAATGTCTACGATTGTGTTTAC 58.833 37.037 0.00 0.00 0.00 2.01
4250 8629 8.922676 CAACTAATGTCTACGATTGTGTTTACT 58.077 33.333 0.00 0.00 0.00 2.24
4258 9005 9.398170 GTCTACGATTGTGTTTACTAAGTTGTA 57.602 33.333 0.00 0.00 0.00 2.41
4271 9018 2.923605 AGTTGTACTAGAGCTGCGAC 57.076 50.000 0.00 0.00 0.00 5.19
4272 9019 2.160205 AGTTGTACTAGAGCTGCGACA 58.840 47.619 0.00 0.00 0.00 4.35
4273 9020 2.557056 AGTTGTACTAGAGCTGCGACAA 59.443 45.455 0.00 0.00 0.00 3.18
4275 9022 3.868757 TGTACTAGAGCTGCGACAATT 57.131 42.857 0.00 0.00 0.00 2.32
4276 9023 4.976224 TGTACTAGAGCTGCGACAATTA 57.024 40.909 0.00 0.00 0.00 1.40
4284 9038 4.641989 AGAGCTGCGACAATTAATTTGGAT 59.358 37.500 0.00 0.00 39.80 3.41
4356 9117 3.004315 CACATGGTCGTTAGCCAAGTTTT 59.996 43.478 0.00 0.00 35.99 2.43
4394 9157 8.954950 ATATTACAGTTGCTGATATATGCTCC 57.045 34.615 2.91 0.00 35.18 4.70
4432 9195 3.256631 AGTTTCAATCACCTCCATGCAAC 59.743 43.478 0.00 0.00 0.00 4.17
4480 9243 4.505313 GCCAGCATAAGGGCTAAATAAC 57.495 45.455 0.00 0.00 46.74 1.89
4508 9271 5.340667 CGTGCAAAAAGAGCATAAGTTTCTC 59.659 40.000 0.00 0.00 44.79 2.87
4804 10849 6.972328 GCAAAACTTGTTGAAATAGACAGTCA 59.028 34.615 2.66 0.00 0.00 3.41
4844 10915 1.278172 CTCATGCCGCCGACGAATAG 61.278 60.000 0.00 0.00 43.93 1.73
4889 10960 5.344743 ACCTGTAGACACATCAACATAGG 57.655 43.478 0.00 0.00 33.14 2.57
4963 11037 1.153289 CTGCTAGAGCGGCAATGGT 60.153 57.895 1.45 0.00 45.83 3.55
4971 11045 1.142314 GCGGCAATGGTCAATGCAT 59.858 52.632 12.30 0.00 44.32 3.96
4974 11048 2.738000 GCGGCAATGGTCAATGCATTTA 60.738 45.455 9.83 0.00 44.32 1.40
5119 11244 5.507482 CGAGAGAGACTTTTTGTGTGGTCTA 60.507 44.000 0.00 0.00 38.87 2.59
5393 11553 1.224592 CCACCATGGTACTCTGCCC 59.775 63.158 19.28 0.00 31.35 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
406 416 0.750249 TGATGATGTACCGCACGGAT 59.250 50.000 17.40 0.00 38.96 4.18
595 608 1.200020 GTCTTGCCTTACTTGCGCATT 59.800 47.619 12.75 3.63 31.44 3.56
596 609 0.804989 GTCTTGCCTTACTTGCGCAT 59.195 50.000 12.75 0.00 31.44 4.73
597 610 1.234615 GGTCTTGCCTTACTTGCGCA 61.235 55.000 5.66 5.66 0.00 6.09
598 611 1.502190 GGTCTTGCCTTACTTGCGC 59.498 57.895 0.00 0.00 0.00 6.09
599 612 1.787847 CGGTCTTGCCTTACTTGCG 59.212 57.895 0.00 0.00 34.25 4.85
600 613 1.234615 TGCGGTCTTGCCTTACTTGC 61.235 55.000 0.00 0.00 34.25 4.01
616 629 2.954753 GACGAACACCTGCCTTGCG 61.955 63.158 0.00 0.00 0.00 4.85
620 633 1.608590 CATTTTGACGAACACCTGCCT 59.391 47.619 0.00 0.00 0.00 4.75
681 694 7.493971 CCATAGAGATCGAATTTTGTCTGAACT 59.506 37.037 0.00 0.00 0.00 3.01
682 695 7.625553 CCATAGAGATCGAATTTTGTCTGAAC 58.374 38.462 0.00 0.00 0.00 3.18
684 697 5.755375 GCCATAGAGATCGAATTTTGTCTGA 59.245 40.000 0.00 0.00 0.00 3.27
686 699 5.674525 TGCCATAGAGATCGAATTTTGTCT 58.325 37.500 0.00 0.00 0.00 3.41
707 722 5.973158 ACGAATTGTTGCTTAAAAACATGC 58.027 33.333 0.00 0.00 37.38 4.06
711 726 8.122306 AGGTTAACGAATTGTTGCTTAAAAAC 57.878 30.769 0.00 0.00 42.01 2.43
724 739 8.924511 ATCATCCATGATAAGGTTAACGAATT 57.075 30.769 0.00 0.00 45.17 2.17
743 758 7.865707 AGAAAAGCACGATAACATTATCATCC 58.134 34.615 11.26 0.31 39.55 3.51
747 762 5.841296 GCGAGAAAAGCACGATAACATTATC 59.159 40.000 0.00 2.08 34.62 1.75
751 766 3.062639 CAGCGAGAAAAGCACGATAACAT 59.937 43.478 0.00 0.00 37.01 2.71
759 774 2.975851 CACAAATCAGCGAGAAAAGCAC 59.024 45.455 0.00 0.00 37.01 4.40
766 781 2.768253 ACATCCACAAATCAGCGAGA 57.232 45.000 0.00 0.00 0.00 4.04
785 800 6.403866 TCAAGAAGGAAGCAGCAAAAATAA 57.596 33.333 0.00 0.00 0.00 1.40
790 805 3.225104 ACATCAAGAAGGAAGCAGCAAA 58.775 40.909 0.00 0.00 0.00 3.68
794 809 6.506500 AATGTTACATCAAGAAGGAAGCAG 57.493 37.500 0.00 0.00 0.00 4.24
796 811 7.414540 CCACTAATGTTACATCAAGAAGGAAGC 60.415 40.741 12.62 0.00 0.00 3.86
797 812 7.607991 ACCACTAATGTTACATCAAGAAGGAAG 59.392 37.037 19.42 5.03 0.00 3.46
800 815 7.390440 TGAACCACTAATGTTACATCAAGAAGG 59.610 37.037 12.62 14.04 0.00 3.46
801 816 8.322906 TGAACCACTAATGTTACATCAAGAAG 57.677 34.615 12.62 7.14 0.00 2.85
803 818 7.450074 ACTGAACCACTAATGTTACATCAAGA 58.550 34.615 12.62 0.00 0.00 3.02
804 819 7.672983 ACTGAACCACTAATGTTACATCAAG 57.327 36.000 0.00 2.37 0.00 3.02
806 821 9.733556 AATAACTGAACCACTAATGTTACATCA 57.266 29.630 0.00 0.00 0.00 3.07
811 826 9.685828 GCAAAAATAACTGAACCACTAATGTTA 57.314 29.630 0.00 0.00 0.00 2.41
813 828 7.151976 GGCAAAAATAACTGAACCACTAATGT 58.848 34.615 0.00 0.00 0.00 2.71
815 830 7.296628 TGGCAAAAATAACTGAACCACTAAT 57.703 32.000 0.00 0.00 0.00 1.73
816 831 6.716934 TGGCAAAAATAACTGAACCACTAA 57.283 33.333 0.00 0.00 0.00 2.24
817 832 6.322712 ACTTGGCAAAAATAACTGAACCACTA 59.677 34.615 0.00 0.00 0.00 2.74
821 836 5.234116 CACACTTGGCAAAAATAACTGAACC 59.766 40.000 0.00 0.00 0.00 3.62
822 837 5.234116 CCACACTTGGCAAAAATAACTGAAC 59.766 40.000 0.00 0.00 35.56 3.18
858 873 6.849151 TGGCTCTCAGATTACTACTACCATA 58.151 40.000 0.00 0.00 0.00 2.74
859 874 5.706447 TGGCTCTCAGATTACTACTACCAT 58.294 41.667 0.00 0.00 0.00 3.55
861 876 5.010213 CCTTGGCTCTCAGATTACTACTACC 59.990 48.000 0.00 0.00 0.00 3.18
864 1007 4.873010 TCCTTGGCTCTCAGATTACTACT 58.127 43.478 0.00 0.00 0.00 2.57
868 1011 2.169352 TGCTCCTTGGCTCTCAGATTAC 59.831 50.000 0.00 0.00 0.00 1.89
877 1020 0.604578 TGCAAATTGCTCCTTGGCTC 59.395 50.000 19.34 0.00 45.31 4.70
899 1042 0.674581 GCCCTTGGAATTTTGCAGCC 60.675 55.000 0.00 0.00 0.00 4.85
900 1043 0.674581 GGCCCTTGGAATTTTGCAGC 60.675 55.000 0.00 0.00 0.00 5.25
901 1044 0.978907 AGGCCCTTGGAATTTTGCAG 59.021 50.000 0.00 0.00 0.00 4.41
974 1132 1.064017 ACAGAGGAGGCTCCAGAGTAG 60.064 57.143 33.86 18.87 39.61 2.57
976 1134 0.614415 CACAGAGGAGGCTCCAGAGT 60.614 60.000 33.86 24.13 39.61 3.24
977 1135 1.958902 GCACAGAGGAGGCTCCAGAG 61.959 65.000 33.86 23.51 39.61 3.35
978 1136 1.986757 GCACAGAGGAGGCTCCAGA 60.987 63.158 33.86 0.00 39.61 3.86
980 1138 2.203832 TGCACAGAGGAGGCTCCA 60.204 61.111 33.86 9.94 39.61 3.86
981 1139 2.289532 ACTGCACAGAGGAGGCTCC 61.290 63.158 26.42 26.42 40.51 4.70
982 1140 1.079266 CACTGCACAGAGGAGGCTC 60.079 63.158 5.78 5.78 40.51 4.70
985 1143 2.745698 TGCACTGCACAGAGGAGG 59.254 61.111 4.31 0.00 40.51 4.30
1035 1196 2.869233 TTGTTGCTGCTGAAGGTTTC 57.131 45.000 0.00 0.00 0.00 2.78
1200 1366 1.153289 CTCACGGAAGGGCATGAGG 60.153 63.158 0.00 0.00 35.87 3.86
1205 1371 1.371183 CTGTTCTCACGGAAGGGCA 59.629 57.895 0.00 0.00 34.23 5.36
1294 1460 7.996066 ACACACTACTACATCTATCATCAGAGT 59.004 37.037 0.00 0.00 0.00 3.24
1322 1488 8.020819 GCATCTATCAGAACTAGTGACAGATAC 58.979 40.741 0.00 0.00 36.29 2.24
1348 1514 3.322254 AGTCTGAAGGGAACACACTACTG 59.678 47.826 0.00 0.00 0.00 2.74
1379 1545 2.079925 GATGACTTCTGGACTTGCACC 58.920 52.381 0.00 0.00 0.00 5.01
1389 1555 3.969287 TCAACCCAGAGATGACTTCTG 57.031 47.619 0.00 0.00 33.74 3.02
1456 1626 2.964464 ACTATCATCAGAGTCCAGCAGG 59.036 50.000 0.00 0.00 0.00 4.85
1464 1634 3.972638 AGGCCAATCACTATCATCAGAGT 59.027 43.478 5.01 0.00 0.00 3.24
1471 1641 3.193267 GTGCAAAAGGCCAATCACTATCA 59.807 43.478 5.01 0.00 43.89 2.15
1614 1800 1.027357 ATGCACCATTTCATCGCTCC 58.973 50.000 0.00 0.00 0.00 4.70
1618 1804 5.065090 TCAGAACTTATGCACCATTTCATCG 59.935 40.000 0.00 0.00 0.00 3.84
1628 1814 7.332926 TCTCAAAAGAGATCAGAACTTATGCAC 59.667 37.037 0.00 0.00 0.00 4.57
1629 1815 7.389232 TCTCAAAAGAGATCAGAACTTATGCA 58.611 34.615 0.00 0.00 0.00 3.96
1630 1816 7.840342 TCTCAAAAGAGATCAGAACTTATGC 57.160 36.000 0.00 0.00 0.00 3.14
1634 1820 9.347240 TCAAAATCTCAAAAGAGATCAGAACTT 57.653 29.630 8.31 0.00 40.72 2.66
1635 1821 8.915057 TCAAAATCTCAAAAGAGATCAGAACT 57.085 30.769 8.31 0.00 40.72 3.01
1636 1822 9.557338 CATCAAAATCTCAAAAGAGATCAGAAC 57.443 33.333 8.31 0.00 40.72 3.01
1637 1823 8.737175 CCATCAAAATCTCAAAAGAGATCAGAA 58.263 33.333 8.31 0.00 40.72 3.02
1638 1824 8.105197 TCCATCAAAATCTCAAAAGAGATCAGA 58.895 33.333 8.31 7.43 40.72 3.27
1639 1825 8.277490 TCCATCAAAATCTCAAAAGAGATCAG 57.723 34.615 8.31 2.93 40.72 2.90
1640 1826 8.818622 ATCCATCAAAATCTCAAAAGAGATCA 57.181 30.769 8.31 0.00 40.72 2.92
1648 1834 9.695526 CAGTTGTTTATCCATCAAAATCTCAAA 57.304 29.630 0.00 0.00 0.00 2.69
1649 1835 8.859090 ACAGTTGTTTATCCATCAAAATCTCAA 58.141 29.630 0.00 0.00 0.00 3.02
1650 1836 8.408043 ACAGTTGTTTATCCATCAAAATCTCA 57.592 30.769 0.00 0.00 0.00 3.27
1651 1837 9.132521 CAACAGTTGTTTATCCATCAAAATCTC 57.867 33.333 4.99 0.00 35.83 2.75
1652 1838 8.090214 CCAACAGTTGTTTATCCATCAAAATCT 58.910 33.333 12.42 0.00 35.83 2.40
1653 1839 7.148590 GCCAACAGTTGTTTATCCATCAAAATC 60.149 37.037 12.42 0.00 35.83 2.17
1654 1840 6.650390 GCCAACAGTTGTTTATCCATCAAAAT 59.350 34.615 12.42 0.00 35.83 1.82
1655 1841 5.988561 GCCAACAGTTGTTTATCCATCAAAA 59.011 36.000 12.42 0.00 35.83 2.44
1656 1842 5.510520 GGCCAACAGTTGTTTATCCATCAAA 60.511 40.000 12.42 0.00 35.83 2.69
1657 1843 4.021544 GGCCAACAGTTGTTTATCCATCAA 60.022 41.667 12.42 0.00 35.83 2.57
1658 1844 3.509575 GGCCAACAGTTGTTTATCCATCA 59.490 43.478 12.42 0.00 35.83 3.07
1659 1845 3.763897 AGGCCAACAGTTGTTTATCCATC 59.236 43.478 12.42 0.00 35.83 3.51
1660 1846 3.778265 AGGCCAACAGTTGTTTATCCAT 58.222 40.909 12.42 0.00 35.83 3.41
1661 1847 3.237268 AGGCCAACAGTTGTTTATCCA 57.763 42.857 12.42 0.00 35.83 3.41
1662 1848 4.947388 TCATAGGCCAACAGTTGTTTATCC 59.053 41.667 12.42 5.36 35.83 2.59
1663 1849 5.449177 GCTCATAGGCCAACAGTTGTTTATC 60.449 44.000 12.42 0.00 35.83 1.75
1664 1850 4.399303 GCTCATAGGCCAACAGTTGTTTAT 59.601 41.667 12.42 4.49 35.83 1.40
1665 1851 3.756434 GCTCATAGGCCAACAGTTGTTTA 59.244 43.478 12.42 2.41 35.83 2.01
1666 1852 2.558359 GCTCATAGGCCAACAGTTGTTT 59.442 45.455 12.42 0.23 35.83 2.83
1667 1853 2.162681 GCTCATAGGCCAACAGTTGTT 58.837 47.619 12.42 0.00 39.12 2.83
1668 1854 1.352352 AGCTCATAGGCCAACAGTTGT 59.648 47.619 12.42 0.00 0.00 3.32
1669 1855 2.119801 AGCTCATAGGCCAACAGTTG 57.880 50.000 5.01 6.28 0.00 3.16
1670 1856 2.821969 CAAAGCTCATAGGCCAACAGTT 59.178 45.455 5.01 0.00 0.00 3.16
1671 1857 2.224867 ACAAAGCTCATAGGCCAACAGT 60.225 45.455 5.01 0.00 0.00 3.55
1672 1858 2.440409 ACAAAGCTCATAGGCCAACAG 58.560 47.619 5.01 0.00 0.00 3.16
1673 1859 2.584835 ACAAAGCTCATAGGCCAACA 57.415 45.000 5.01 0.00 0.00 3.33
1674 1860 3.578688 CAAACAAAGCTCATAGGCCAAC 58.421 45.455 5.01 0.00 0.00 3.77
1677 1863 1.468054 CGCAAACAAAGCTCATAGGCC 60.468 52.381 0.00 0.00 0.00 5.19
1678 1864 1.468054 CCGCAAACAAAGCTCATAGGC 60.468 52.381 0.00 0.00 0.00 3.93
1691 1877 3.007635 AGCTATCAGGTTTACCGCAAAC 58.992 45.455 0.00 3.07 44.94 2.93
1693 1879 3.343941 AAGCTATCAGGTTTACCGCAA 57.656 42.857 0.00 0.00 42.08 4.85
1696 1882 3.006940 TGCAAAGCTATCAGGTTTACCG 58.993 45.455 3.28 0.00 43.27 4.02
1698 1884 4.938226 AGTCTGCAAAGCTATCAGGTTTAC 59.062 41.667 3.28 0.00 43.27 2.01
1700 1886 4.026356 AGTCTGCAAAGCTATCAGGTTT 57.974 40.909 9.13 0.00 45.69 3.27
1701 1887 3.710209 AGTCTGCAAAGCTATCAGGTT 57.290 42.857 9.13 0.00 37.57 3.50
1703 1889 5.382618 AAAAAGTCTGCAAAGCTATCAGG 57.617 39.130 9.13 0.00 0.00 3.86
1723 1909 4.381079 CCCAGTCGGTTTCAAACTCAAAAA 60.381 41.667 0.00 0.00 0.00 1.94
1724 1910 3.129638 CCCAGTCGGTTTCAAACTCAAAA 59.870 43.478 0.00 0.00 0.00 2.44
1725 1911 2.685897 CCCAGTCGGTTTCAAACTCAAA 59.314 45.455 0.00 0.00 0.00 2.69
1726 1912 2.294074 CCCAGTCGGTTTCAAACTCAA 58.706 47.619 0.00 0.00 0.00 3.02
1727 1913 1.961793 CCCAGTCGGTTTCAAACTCA 58.038 50.000 0.00 0.00 0.00 3.41
1728 1914 0.591659 GCCCAGTCGGTTTCAAACTC 59.408 55.000 0.00 0.00 0.00 3.01
1729 1915 0.106918 TGCCCAGTCGGTTTCAAACT 60.107 50.000 0.00 0.00 0.00 2.66
1730 1916 0.741915 TTGCCCAGTCGGTTTCAAAC 59.258 50.000 0.00 0.00 0.00 2.93
1731 1917 0.741915 GTTGCCCAGTCGGTTTCAAA 59.258 50.000 0.00 0.00 0.00 2.69
1732 1918 0.394488 TGTTGCCCAGTCGGTTTCAA 60.394 50.000 0.00 0.00 0.00 2.69
1733 1919 1.098712 GTGTTGCCCAGTCGGTTTCA 61.099 55.000 0.00 0.00 0.00 2.69
1734 1920 1.098712 TGTGTTGCCCAGTCGGTTTC 61.099 55.000 0.00 0.00 0.00 2.78
1735 1921 0.681564 TTGTGTTGCCCAGTCGGTTT 60.682 50.000 0.00 0.00 0.00 3.27
1736 1922 0.467290 ATTGTGTTGCCCAGTCGGTT 60.467 50.000 0.00 0.00 0.00 4.44
1737 1923 1.150536 ATTGTGTTGCCCAGTCGGT 59.849 52.632 0.00 0.00 0.00 4.69
1738 1924 0.888736 TCATTGTGTTGCCCAGTCGG 60.889 55.000 0.00 0.00 0.00 4.79
1739 1925 1.135603 CATCATTGTGTTGCCCAGTCG 60.136 52.381 0.00 0.00 0.00 4.18
1740 1926 1.888512 ACATCATTGTGTTGCCCAGTC 59.111 47.619 0.00 0.00 33.85 3.51
1741 1927 1.999648 ACATCATTGTGTTGCCCAGT 58.000 45.000 0.00 0.00 33.85 4.00
1763 1950 5.118510 GCAATTCCAATGTAACCAGAAAACG 59.881 40.000 0.00 0.00 0.00 3.60
1768 1955 8.995027 ATATTAGCAATTCCAATGTAACCAGA 57.005 30.769 0.00 0.00 0.00 3.86
1774 1961 7.594351 TGGCAATATTAGCAATTCCAATGTA 57.406 32.000 10.63 0.00 0.00 2.29
1776 1963 5.407387 GCTGGCAATATTAGCAATTCCAATG 59.593 40.000 4.19 0.00 37.40 2.82
1777 1964 5.306160 AGCTGGCAATATTAGCAATTCCAAT 59.694 36.000 10.54 0.00 39.84 3.16
1783 1974 5.388654 ACCTAAGCTGGCAATATTAGCAAT 58.611 37.500 10.54 2.98 39.84 3.56
1787 1978 5.468072 CAGTGACCTAAGCTGGCAATATTAG 59.532 44.000 0.00 0.00 0.00 1.73
1979 2171 7.870445 GTGGTAAGCAATCCAAACTATTCAAAA 59.130 33.333 0.00 0.00 35.38 2.44
1980 2172 7.014711 TGTGGTAAGCAATCCAAACTATTCAAA 59.985 33.333 0.00 0.00 35.38 2.69
1981 2173 6.491745 TGTGGTAAGCAATCCAAACTATTCAA 59.508 34.615 0.00 0.00 35.38 2.69
1982 2174 6.007076 TGTGGTAAGCAATCCAAACTATTCA 58.993 36.000 0.00 0.00 35.38 2.57
1983 2175 6.509418 TGTGGTAAGCAATCCAAACTATTC 57.491 37.500 0.00 0.00 35.38 1.75
1984 2176 6.437162 ACATGTGGTAAGCAATCCAAACTATT 59.563 34.615 0.00 0.00 35.38 1.73
1985 2177 5.951747 ACATGTGGTAAGCAATCCAAACTAT 59.048 36.000 0.00 0.00 35.38 2.12
1986 2178 5.182950 CACATGTGGTAAGCAATCCAAACTA 59.817 40.000 18.51 0.00 35.38 2.24
1987 2179 4.022068 CACATGTGGTAAGCAATCCAAACT 60.022 41.667 18.51 0.00 35.38 2.66
1988 2180 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
1989 2181 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
1990 2182 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
1991 2183 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
1992 2184 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
1993 2185 3.501828 TGTGACACATGTGGTAAGCAATC 59.498 43.478 28.64 14.99 34.19 2.67
1994 2186 3.485394 TGTGACACATGTGGTAAGCAAT 58.515 40.909 28.64 5.90 34.19 3.56
1995 2187 2.924421 TGTGACACATGTGGTAAGCAA 58.076 42.857 28.64 5.83 34.19 3.91
1996 2188 2.629336 TGTGACACATGTGGTAAGCA 57.371 45.000 28.64 16.41 34.19 3.91
2005 2197 8.206876 TAACTTGCGTTACCATGTGACACATG 62.207 42.308 32.75 32.75 43.13 3.21
2006 2198 2.177394 TGCGTTACCATGTGACACAT 57.823 45.000 15.48 15.48 39.91 3.21
2007 2199 1.870402 CTTGCGTTACCATGTGACACA 59.130 47.619 11.41 11.41 0.00 3.72
2008 2200 1.871039 ACTTGCGTTACCATGTGACAC 59.129 47.619 0.00 0.00 0.00 3.67
2009 2201 2.248280 ACTTGCGTTACCATGTGACA 57.752 45.000 0.00 0.00 0.00 3.58
2010 2202 4.735662 TTAACTTGCGTTACCATGTGAC 57.264 40.909 0.00 0.00 35.44 3.67
2011 2203 5.950758 AATTAACTTGCGTTACCATGTGA 57.049 34.783 0.00 0.00 35.44 3.58
2012 2204 5.737290 GCTAATTAACTTGCGTTACCATGTG 59.263 40.000 0.00 0.00 35.44 3.21
2013 2205 5.646360 AGCTAATTAACTTGCGTTACCATGT 59.354 36.000 0.00 0.00 35.44 3.21
2014 2206 5.965334 CAGCTAATTAACTTGCGTTACCATG 59.035 40.000 0.00 0.00 35.44 3.66
2015 2207 5.448632 GCAGCTAATTAACTTGCGTTACCAT 60.449 40.000 0.00 0.00 35.44 3.55
2016 2208 4.142773 GCAGCTAATTAACTTGCGTTACCA 60.143 41.667 0.00 0.00 35.44 3.25
2017 2209 4.142773 TGCAGCTAATTAACTTGCGTTACC 60.143 41.667 0.00 0.00 35.44 2.85
2018 2210 4.965062 TGCAGCTAATTAACTTGCGTTAC 58.035 39.130 0.00 0.00 35.44 2.50
2019 2211 4.436852 GCTGCAGCTAATTAACTTGCGTTA 60.437 41.667 31.33 0.00 38.21 3.18
2020 2212 3.670627 GCTGCAGCTAATTAACTTGCGTT 60.671 43.478 31.33 0.00 38.21 4.84
2021 2213 2.159517 GCTGCAGCTAATTAACTTGCGT 60.160 45.455 31.33 0.00 38.21 5.24
2022 2214 2.444351 GCTGCAGCTAATTAACTTGCG 58.556 47.619 31.33 0.00 38.21 4.85
2023 2215 2.095853 TCGCTGCAGCTAATTAACTTGC 59.904 45.455 34.22 6.39 39.32 4.01
2024 2216 3.125146 TGTCGCTGCAGCTAATTAACTTG 59.875 43.478 34.22 15.93 39.32 3.16
2025 2217 3.334691 TGTCGCTGCAGCTAATTAACTT 58.665 40.909 34.22 0.00 39.32 2.66
2026 2218 2.972625 TGTCGCTGCAGCTAATTAACT 58.027 42.857 34.22 0.00 39.32 2.24
2027 2219 3.740044 TTGTCGCTGCAGCTAATTAAC 57.260 42.857 34.22 21.20 39.32 2.01
2028 2220 3.751175 ACTTTGTCGCTGCAGCTAATTAA 59.249 39.130 34.22 19.94 39.32 1.40
2029 2221 3.334691 ACTTTGTCGCTGCAGCTAATTA 58.665 40.909 34.22 16.62 39.32 1.40
2263 3104 4.016444 GTTGGCCTCCTGAATACATTTCA 58.984 43.478 3.32 0.00 0.00 2.69
2264 3105 3.065371 CGTTGGCCTCCTGAATACATTTC 59.935 47.826 3.32 0.00 0.00 2.17
2533 3411 7.103641 TCTTATGACTCTGTCAATGGTTAACC 58.896 38.462 18.27 18.27 45.96 2.85
2535 3413 9.739276 ATTTCTTATGACTCTGTCAATGGTTAA 57.261 29.630 4.46 0.00 45.96 2.01
2544 3422 6.809196 AGTTCACGATTTCTTATGACTCTGTC 59.191 38.462 0.00 0.00 0.00 3.51
2629 3507 5.750547 ACAGACGATACACATATCTGCAAAG 59.249 40.000 0.00 0.00 40.39 2.77
2693 3571 6.826668 TCAAAGTTAGAGACTGACCATTTGA 58.173 36.000 0.00 0.00 39.00 2.69
2791 3679 5.295292 CGTAGTTTCCAATCTCAATCTGCAT 59.705 40.000 0.00 0.00 0.00 3.96
2847 3738 5.767168 AGCTGAAACTTTTACTTGCTCAGAT 59.233 36.000 0.00 0.00 32.39 2.90
2886 3777 8.856490 ATGAACCAATAGCAAAAATCGATAAC 57.144 30.769 0.00 0.00 0.00 1.89
2894 3785 8.637986 AGTAAACAGATGAACCAATAGCAAAAA 58.362 29.630 0.00 0.00 0.00 1.94
2900 3791 8.954950 ATCTCAGTAAACAGATGAACCAATAG 57.045 34.615 0.00 0.00 0.00 1.73
2919 3810 8.781196 CCACATAGAAATGATGGTTTATCTCAG 58.219 37.037 0.00 0.00 36.54 3.35
2925 3816 8.877864 AGTTTCCACATAGAAATGATGGTTTA 57.122 30.769 0.00 0.00 38.01 2.01
2952 3843 6.409704 TCTGAAATTGATCAAACGAGGATCT 58.590 36.000 13.09 0.00 41.35 2.75
2953 3844 6.668541 TCTGAAATTGATCAAACGAGGATC 57.331 37.500 13.09 4.27 41.20 3.36
2956 3847 7.278646 TCAGTATCTGAAATTGATCAAACGAGG 59.721 37.037 13.09 3.74 37.57 4.63
2958 3849 8.546597 TTCAGTATCTGAAATTGATCAAACGA 57.453 30.769 13.09 5.26 45.84 3.85
3041 3932 1.079543 CGGAAGGCTCAGAGTGTGG 60.080 63.158 0.00 0.00 0.00 4.17
3056 3947 4.230733 AGAGGATGATATACCTGATCCGGA 59.769 45.833 6.61 6.61 39.58 5.14
3059 3950 5.954752 TGACAGAGGATGATATACCTGATCC 59.045 44.000 0.00 0.00 36.57 3.36
3085 3977 8.974060 TTTCAAGAAACCTAGTAACTGAATGT 57.026 30.769 0.00 0.00 0.00 2.71
3086 3978 9.831737 CATTTCAAGAAACCTAGTAACTGAATG 57.168 33.333 0.00 0.00 32.51 2.67
3097 3989 8.740123 TGTTAACTGTCATTTCAAGAAACCTA 57.260 30.769 7.22 0.00 32.51 3.08
3100 3992 8.798153 CACTTGTTAACTGTCATTTCAAGAAAC 58.202 33.333 7.22 0.00 35.99 2.78
3107 3999 7.698836 AAATGCACTTGTTAACTGTCATTTC 57.301 32.000 20.07 4.98 30.00 2.17
3128 4020 6.855763 TGCACAAAAGGATTCCAGATAAAT 57.144 33.333 5.29 0.00 0.00 1.40
3129 4021 6.662865 TTGCACAAAAGGATTCCAGATAAA 57.337 33.333 5.29 0.00 0.00 1.40
3131 4023 6.662865 TTTTGCACAAAAGGATTCCAGATA 57.337 33.333 5.29 0.00 35.57 1.98
3134 4026 6.705381 TGTAATTTTGCACAAAAGGATTCCAG 59.295 34.615 13.43 0.00 42.72 3.86
3135 4027 6.586344 TGTAATTTTGCACAAAAGGATTCCA 58.414 32.000 13.43 0.00 42.72 3.53
3140 4032 7.014134 TCTCATCTGTAATTTTGCACAAAAGGA 59.986 33.333 13.43 7.39 42.72 3.36
3143 4035 7.715657 AGTCTCATCTGTAATTTTGCACAAAA 58.284 30.769 10.70 10.70 43.48 2.44
3145 4037 6.882610 AGTCTCATCTGTAATTTTGCACAA 57.117 33.333 0.00 0.00 0.00 3.33
3193 4085 3.930634 TCAGTCTGGATGATATCAGCG 57.069 47.619 14.45 2.43 32.09 5.18
3196 4088 3.006217 CGCCTTCAGTCTGGATGATATCA 59.994 47.826 8.10 8.10 0.00 2.15
3217 4109 2.036733 TGTTGGACTAGAACACTTCCCG 59.963 50.000 0.00 0.00 0.00 5.14
3235 4127 1.756538 CCAAGAACACCAGGCTTTGTT 59.243 47.619 10.34 10.34 38.67 2.83
3247 4139 7.822822 GCTACCTTTTCTATTAGTCCAAGAACA 59.177 37.037 0.00 0.00 0.00 3.18
3250 4142 6.570692 CGCTACCTTTTCTATTAGTCCAAGA 58.429 40.000 0.00 0.00 0.00 3.02
3256 4148 7.443259 TTTTTGCGCTACCTTTTCTATTAGT 57.557 32.000 9.73 0.00 0.00 2.24
3262 4154 3.005791 AGCATTTTTGCGCTACCTTTTCT 59.994 39.130 9.73 0.00 36.50 2.52
3290 4183 6.916387 GCTTGATAGTGCGTGTTCTATACTTA 59.084 38.462 0.00 0.00 0.00 2.24
3291 4184 5.749109 GCTTGATAGTGCGTGTTCTATACTT 59.251 40.000 0.00 0.00 0.00 2.24
3292 4185 5.163550 TGCTTGATAGTGCGTGTTCTATACT 60.164 40.000 0.00 0.00 0.00 2.12
3293 4186 5.041287 TGCTTGATAGTGCGTGTTCTATAC 58.959 41.667 0.00 0.00 0.00 1.47
3294 4187 5.041287 GTGCTTGATAGTGCGTGTTCTATA 58.959 41.667 0.00 0.00 0.00 1.31
3295 4188 3.865745 GTGCTTGATAGTGCGTGTTCTAT 59.134 43.478 0.00 0.00 0.00 1.98
3304 4267 4.616181 AAATAACGGTGCTTGATAGTGC 57.384 40.909 0.00 0.00 0.00 4.40
3326 4290 9.308000 ACATCAGTTATGAATTAGGGAAACAAA 57.692 29.630 0.00 0.00 39.39 2.83
3332 4296 7.279981 CGTTGAACATCAGTTATGAATTAGGGA 59.720 37.037 0.00 0.00 39.39 4.20
3334 4298 8.196802 TCGTTGAACATCAGTTATGAATTAGG 57.803 34.615 0.00 0.00 39.39 2.69
3348 4312 4.678509 TGCCTACAATTCGTTGAACATC 57.321 40.909 0.00 0.00 0.00 3.06
3349 4313 4.277174 TGTTGCCTACAATTCGTTGAACAT 59.723 37.500 0.00 0.00 38.27 2.71
3387 4351 2.251818 GCCCTAGAGATGGAGTATGCA 58.748 52.381 0.00 0.00 44.23 3.96
3402 4366 2.495409 CGGTATGCTGACGGCCCTA 61.495 63.158 3.22 0.00 40.92 3.53
3432 4396 1.207329 GTCACTGAACTTAGCCCCGAT 59.793 52.381 0.00 0.00 0.00 4.18
3493 4457 4.481368 AGTTTGAGACACAAGGTACACA 57.519 40.909 0.00 0.00 39.77 3.72
3494 4458 5.006746 CAGAAGTTTGAGACACAAGGTACAC 59.993 44.000 0.00 0.00 39.77 2.90
3499 4463 2.032549 CGCAGAAGTTTGAGACACAAGG 60.033 50.000 0.00 0.00 39.77 3.61
3501 4465 1.939934 CCGCAGAAGTTTGAGACACAA 59.060 47.619 0.00 0.00 36.65 3.33
3505 4469 3.067106 TCATTCCGCAGAAGTTTGAGAC 58.933 45.455 0.00 0.00 34.86 3.36
3521 4485 3.268330 TCTCACTGCTTGCTCATCATTC 58.732 45.455 0.00 0.00 0.00 2.67
3531 4495 4.329256 CACATCACACTATCTCACTGCTTG 59.671 45.833 0.00 0.00 0.00 4.01
3536 4500 5.714333 AGAGTTCACATCACACTATCTCACT 59.286 40.000 0.00 0.00 0.00 3.41
3537 4501 5.804473 CAGAGTTCACATCACACTATCTCAC 59.196 44.000 0.00 0.00 0.00 3.51
3543 4507 4.340950 TGTCACAGAGTTCACATCACACTA 59.659 41.667 0.00 0.00 0.00 2.74
3544 4508 3.132824 TGTCACAGAGTTCACATCACACT 59.867 43.478 0.00 0.00 0.00 3.55
3545 4509 3.457234 TGTCACAGAGTTCACATCACAC 58.543 45.455 0.00 0.00 0.00 3.82
3546 4510 3.132824 ACTGTCACAGAGTTCACATCACA 59.867 43.478 13.14 0.00 35.18 3.58
3547 4511 3.722147 ACTGTCACAGAGTTCACATCAC 58.278 45.455 13.14 0.00 35.18 3.06
3548 4512 5.529581 TTACTGTCACAGAGTTCACATCA 57.470 39.130 13.14 0.00 35.18 3.07
3549 4513 8.534333 TTATTTACTGTCACAGAGTTCACATC 57.466 34.615 13.14 0.00 35.18 3.06
3564 4528 7.001674 TGGATCAGTGTTGGTTTATTTACTGT 58.998 34.615 0.00 0.00 37.42 3.55
3566 4530 7.458397 TCTGGATCAGTGTTGGTTTATTTACT 58.542 34.615 0.00 0.00 32.61 2.24
3568 4532 7.721842 TGTTCTGGATCAGTGTTGGTTTATTTA 59.278 33.333 0.00 0.00 32.61 1.40
3597 4561 6.127758 GCAGATGTAATGTGTAATGGTCCAAA 60.128 38.462 0.00 0.00 40.24 3.28
3598 4562 5.356751 GCAGATGTAATGTGTAATGGTCCAA 59.643 40.000 0.00 0.00 40.24 3.53
3599 4563 4.881273 GCAGATGTAATGTGTAATGGTCCA 59.119 41.667 0.00 0.00 40.24 4.02
3600 4564 5.126067 AGCAGATGTAATGTGTAATGGTCC 58.874 41.667 0.00 0.00 40.24 4.46
3601 4565 6.073548 GCTAGCAGATGTAATGTGTAATGGTC 60.074 42.308 10.63 0.00 40.24 4.02
3602 4566 5.760253 GCTAGCAGATGTAATGTGTAATGGT 59.240 40.000 10.63 0.00 40.24 3.55
3603 4567 5.994054 AGCTAGCAGATGTAATGTGTAATGG 59.006 40.000 18.83 0.00 40.24 3.16
3604 4568 6.927936 AGAGCTAGCAGATGTAATGTGTAATG 59.072 38.462 18.83 0.00 40.24 1.90
3605 4569 7.060383 AGAGCTAGCAGATGTAATGTGTAAT 57.940 36.000 18.83 0.00 40.24 1.89
3606 4570 6.096846 TGAGAGCTAGCAGATGTAATGTGTAA 59.903 38.462 18.83 0.00 40.24 2.41
3607 4571 5.594317 TGAGAGCTAGCAGATGTAATGTGTA 59.406 40.000 18.83 0.00 40.24 2.90
3608 4572 4.403752 TGAGAGCTAGCAGATGTAATGTGT 59.596 41.667 18.83 0.00 40.24 3.72
3609 4573 4.941657 TGAGAGCTAGCAGATGTAATGTG 58.058 43.478 18.83 0.00 41.21 3.21
3610 4574 5.303845 TCATGAGAGCTAGCAGATGTAATGT 59.696 40.000 18.83 0.00 0.00 2.71
3611 4575 5.634439 GTCATGAGAGCTAGCAGATGTAATG 59.366 44.000 18.83 10.75 0.00 1.90
3612 4576 5.539574 AGTCATGAGAGCTAGCAGATGTAAT 59.460 40.000 18.83 0.00 0.00 1.89
3613 4577 4.892345 AGTCATGAGAGCTAGCAGATGTAA 59.108 41.667 18.83 0.00 0.00 2.41
3614 4578 4.468713 AGTCATGAGAGCTAGCAGATGTA 58.531 43.478 18.83 0.00 0.00 2.29
3615 4579 3.298619 AGTCATGAGAGCTAGCAGATGT 58.701 45.455 18.83 0.00 0.00 3.06
3616 4580 4.038282 AGAAGTCATGAGAGCTAGCAGATG 59.962 45.833 18.83 12.40 0.00 2.90
3617 4581 4.217510 AGAAGTCATGAGAGCTAGCAGAT 58.782 43.478 18.83 1.16 0.00 2.90
3618 4582 3.630168 AGAAGTCATGAGAGCTAGCAGA 58.370 45.455 18.83 1.81 0.00 4.26
3619 4583 4.362279 GAAGAAGTCATGAGAGCTAGCAG 58.638 47.826 18.83 0.00 0.00 4.24
3620 4584 3.181492 CGAAGAAGTCATGAGAGCTAGCA 60.181 47.826 18.83 0.00 0.00 3.49
3621 4585 3.181491 ACGAAGAAGTCATGAGAGCTAGC 60.181 47.826 6.62 6.62 0.00 3.42
3622 4586 4.142491 ACACGAAGAAGTCATGAGAGCTAG 60.142 45.833 0.00 0.00 0.00 3.42
3623 4587 3.759086 ACACGAAGAAGTCATGAGAGCTA 59.241 43.478 0.00 0.00 0.00 3.32
3628 4592 2.802247 TGCAACACGAAGAAGTCATGAG 59.198 45.455 0.00 0.00 0.00 2.90
3629 4593 2.832563 TGCAACACGAAGAAGTCATGA 58.167 42.857 0.00 0.00 0.00 3.07
3638 4602 6.258727 AGGTATATTTCAGATGCAACACGAAG 59.741 38.462 0.00 0.00 0.00 3.79
3641 4605 5.991328 AGGTATATTTCAGATGCAACACG 57.009 39.130 0.00 0.00 0.00 4.49
3642 4606 8.986477 AAAAAGGTATATTTCAGATGCAACAC 57.014 30.769 0.00 0.00 0.00 3.32
3643 4607 8.250332 GGAAAAAGGTATATTTCAGATGCAACA 58.750 33.333 0.00 0.00 37.29 3.33
3644 4608 8.470002 AGGAAAAAGGTATATTTCAGATGCAAC 58.530 33.333 0.00 0.00 37.29 4.17
3646 4610 7.416664 GCAGGAAAAAGGTATATTTCAGATGCA 60.417 37.037 12.97 0.00 38.93 3.96
3647 4611 6.920210 GCAGGAAAAAGGTATATTTCAGATGC 59.080 38.462 0.00 0.00 37.29 3.91
3649 4613 8.689972 CAAGCAGGAAAAAGGTATATTTCAGAT 58.310 33.333 0.00 0.00 37.29 2.90
3650 4614 7.669722 ACAAGCAGGAAAAAGGTATATTTCAGA 59.330 33.333 0.00 0.00 37.29 3.27
3657 4621 5.636123 TCCAACAAGCAGGAAAAAGGTATA 58.364 37.500 0.00 0.00 0.00 1.47
3659 4623 3.904717 TCCAACAAGCAGGAAAAAGGTA 58.095 40.909 0.00 0.00 0.00 3.08
3661 4625 3.118811 TGTTCCAACAAGCAGGAAAAAGG 60.119 43.478 0.00 0.00 39.22 3.11
3662 4626 4.122143 TGTTCCAACAAGCAGGAAAAAG 57.878 40.909 0.00 0.00 39.22 2.27
3673 4648 7.284261 TGAATAAACTCTCACATGTTCCAACAA 59.716 33.333 0.00 0.00 43.03 2.83
3676 4651 8.408043 AATGAATAAACTCTCACATGTTCCAA 57.592 30.769 0.00 0.00 0.00 3.53
3690 4665 5.809001 TCAGCTCCTGTGAATGAATAAACT 58.191 37.500 0.00 0.00 32.61 2.66
3691 4666 6.317140 TGATCAGCTCCTGTGAATGAATAAAC 59.683 38.462 0.00 0.00 32.61 2.01
3692 4667 6.417258 TGATCAGCTCCTGTGAATGAATAAA 58.583 36.000 0.00 0.00 32.61 1.40
3695 4671 4.498894 TGATCAGCTCCTGTGAATGAAT 57.501 40.909 0.00 0.00 32.61 2.57
3698 4674 4.074627 AGATGATCAGCTCCTGTGAATG 57.925 45.455 7.89 0.00 32.61 2.67
3725 4701 3.170672 TCCCTGCAGCCACAGTGT 61.171 61.111 8.66 0.00 35.83 3.55
3729 4705 2.113774 CAACTCCCTGCAGCCACA 59.886 61.111 8.66 0.00 0.00 4.17
3730 4706 2.674380 CCAACTCCCTGCAGCCAC 60.674 66.667 8.66 0.00 0.00 5.01
3781 4757 0.911769 TCCTCACCTCGGCAATCATT 59.088 50.000 0.00 0.00 0.00 2.57
3787 4763 2.293318 AATGCTCCTCACCTCGGCA 61.293 57.895 0.00 0.00 37.32 5.69
3825 4801 0.250513 GGACACATTCCTCGAAGCCT 59.749 55.000 0.00 0.00 41.95 4.58
3852 4828 9.790389 AGTAATACTAATTGTGAACTCTTCTCG 57.210 33.333 0.00 0.00 0.00 4.04
3920 4896 4.471025 TGCATCTCCTGATTCCTTACTGAA 59.529 41.667 0.00 0.00 0.00 3.02
3942 4920 6.076981 AGAAATGCTAAACTGTTGGAACTG 57.923 37.500 0.00 0.00 0.00 3.16
3950 4928 4.999950 CAGACAGGAGAAATGCTAAACTGT 59.000 41.667 0.00 0.00 38.25 3.55
4160 5846 2.742372 CCGAACTTGACCGCCTGG 60.742 66.667 0.00 0.00 42.84 4.45
4164 5850 1.441732 AACAACCCGAACTTGACCGC 61.442 55.000 0.00 0.00 0.00 5.68
4165 5851 0.584876 GAACAACCCGAACTTGACCG 59.415 55.000 0.00 0.00 0.00 4.79
4166 5852 1.963172 AGAACAACCCGAACTTGACC 58.037 50.000 0.00 0.00 0.00 4.02
4167 5853 4.143179 CGATAAGAACAACCCGAACTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
4168 5854 3.991773 CGATAAGAACAACCCGAACTTGA 59.008 43.478 0.00 0.00 0.00 3.02
4178 5864 7.919690 TGATGAAATGGATCGATAAGAACAAC 58.080 34.615 0.00 0.00 0.00 3.32
4237 8616 9.616634 TCTAGTACAACTTAGTAAACACAATCG 57.383 33.333 0.00 0.00 0.00 3.34
4239 8618 9.420551 GCTCTAGTACAACTTAGTAAACACAAT 57.579 33.333 0.00 0.00 0.00 2.71
4240 8619 8.636213 AGCTCTAGTACAACTTAGTAAACACAA 58.364 33.333 0.00 0.00 0.00 3.33
4241 8620 8.080417 CAGCTCTAGTACAACTTAGTAAACACA 58.920 37.037 0.00 0.00 0.00 3.72
4243 8622 7.088905 GCAGCTCTAGTACAACTTAGTAAACA 58.911 38.462 0.00 0.00 0.00 2.83
4244 8623 6.250951 CGCAGCTCTAGTACAACTTAGTAAAC 59.749 42.308 0.00 0.00 0.00 2.01
4245 8624 6.149973 TCGCAGCTCTAGTACAACTTAGTAAA 59.850 38.462 0.00 0.00 0.00 2.01
4246 8625 5.645067 TCGCAGCTCTAGTACAACTTAGTAA 59.355 40.000 0.00 0.00 0.00 2.24
4247 8626 5.064452 GTCGCAGCTCTAGTACAACTTAGTA 59.936 44.000 0.00 0.00 0.00 1.82
4248 8627 4.008330 TCGCAGCTCTAGTACAACTTAGT 58.992 43.478 0.00 0.00 0.00 2.24
4249 8628 4.142665 TGTCGCAGCTCTAGTACAACTTAG 60.143 45.833 0.00 0.00 0.00 2.18
4250 8629 3.754850 TGTCGCAGCTCTAGTACAACTTA 59.245 43.478 0.00 0.00 0.00 2.24
4258 9005 5.065218 CCAAATTAATTGTCGCAGCTCTAGT 59.935 40.000 0.39 0.00 37.32 2.57
4271 9018 8.839310 ATACTCTCTCCGATCCAAATTAATTG 57.161 34.615 0.39 0.00 38.84 2.32
4272 9019 8.875168 AGATACTCTCTCCGATCCAAATTAATT 58.125 33.333 0.00 0.00 0.00 1.40
4273 9020 8.429237 AGATACTCTCTCCGATCCAAATTAAT 57.571 34.615 0.00 0.00 0.00 1.40
4275 9022 7.841282 AAGATACTCTCTCCGATCCAAATTA 57.159 36.000 0.00 0.00 31.03 1.40
4276 9023 6.739331 AAGATACTCTCTCCGATCCAAATT 57.261 37.500 0.00 0.00 31.03 1.82
4284 9038 5.141182 AGGCAAATAAGATACTCTCTCCGA 58.859 41.667 0.00 0.00 31.03 4.55
4356 9117 8.959548 AGCAACTGTAATATTTGATGAATGTGA 58.040 29.630 0.00 0.00 0.00 3.58
4394 9157 7.337689 TGATTGAAACTATGAACAATGGAGGAG 59.662 37.037 0.00 0.00 33.92 3.69
4432 9195 2.289945 ACTGAGTTTGCTTCTAGGCAGG 60.290 50.000 0.00 0.00 43.39 4.85
4480 9243 2.712057 ATGCTCTTTTTGCACGGAAG 57.288 45.000 0.00 0.00 43.59 3.46
4508 9271 8.903820 TGATCAGGTATACGATGTTGATATAGG 58.096 37.037 0.00 0.00 0.00 2.57
4600 10565 3.748048 CCTTTGATGCGGATACCATGTAG 59.252 47.826 0.00 0.00 0.00 2.74
4729 10740 1.579698 CAGCGCTAGGTAGTCTACGA 58.420 55.000 10.99 0.00 0.00 3.43
4804 10849 1.272769 GACCTAGCACGACAACTTCCT 59.727 52.381 0.00 0.00 0.00 3.36
4869 10940 4.758688 TGCCTATGTTGATGTGTCTACAG 58.241 43.478 0.04 0.00 41.97 2.74
4871 10942 5.643777 AGTTTGCCTATGTTGATGTGTCTAC 59.356 40.000 0.00 0.00 0.00 2.59
4889 10960 9.730420 TCAACAGAAAATTTAGTCTTAGTTTGC 57.270 29.630 0.00 0.00 0.00 3.68
4974 11048 8.901793 AGCAAATTTGGTTAAAACATTGACAAT 58.098 25.926 16.92 0.00 34.89 2.71
5108 11182 2.746904 CCAATTGCGATAGACCACACAA 59.253 45.455 0.00 0.00 39.76 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.