Multiple sequence alignment - TraesCS1A01G399000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G399000 chr1A 100.000 4317 0 0 1 4317 563767608 563771924 0.000000e+00 7973.0
1 TraesCS1A01G399000 chr1A 82.814 1379 188 25 2054 3395 563695333 563696699 0.000000e+00 1188.0
2 TraesCS1A01G399000 chr1A 80.273 1247 218 18 2074 3314 563783608 563784832 0.000000e+00 915.0
3 TraesCS1A01G399000 chr1A 85.606 264 34 2 3132 3395 563776431 563776690 1.530000e-69 274.0
4 TraesCS1A01G399000 chr1B 88.338 2298 172 48 1644 3887 652518205 652520460 0.000000e+00 2671.0
5 TraesCS1A01G399000 chr1B 82.327 1590 217 38 1853 3395 652467474 652469046 0.000000e+00 1321.0
6 TraesCS1A01G399000 chr1B 81.225 506 93 2 106 611 22398575 22399078 1.450000e-109 407.0
7 TraesCS1A01G399000 chr1B 80.830 506 95 2 106 611 22606681 22607184 3.130000e-106 396.0
8 TraesCS1A01G399000 chr1B 82.933 416 44 19 1013 1403 652489992 652489579 2.470000e-92 350.0
9 TraesCS1A01G399000 chr1B 98.630 73 1 0 1582 1654 652518116 652518188 3.500000e-26 130.0
10 TraesCS1A01G399000 chr1B 86.486 74 3 2 917 983 652490066 652489993 1.660000e-09 75.0
11 TraesCS1A01G399000 chr1D 91.600 1500 94 18 1873 3344 470135046 470136541 0.000000e+00 2043.0
12 TraesCS1A01G399000 chr1D 84.147 1577 203 25 1855 3392 470180302 470181870 0.000000e+00 1483.0
13 TraesCS1A01G399000 chr1D 91.023 1036 49 11 615 1635 470127240 470128246 0.000000e+00 1358.0
14 TraesCS1A01G399000 chr1D 81.886 1612 216 39 1998 3565 470084659 470086238 0.000000e+00 1290.0
15 TraesCS1A01G399000 chr1D 81.425 1109 184 13 2058 3163 470190085 470191174 0.000000e+00 887.0
16 TraesCS1A01G399000 chr1D 78.466 1291 231 32 2055 3329 470077538 470078797 0.000000e+00 800.0
17 TraesCS1A01G399000 chr1D 88.372 473 44 7 3425 3887 470136644 470137115 3.770000e-155 558.0
18 TraesCS1A01G399000 chr1D 89.147 387 39 3 226 611 470126628 470127012 3.020000e-131 479.0
19 TraesCS1A01G399000 chr1D 81.961 510 86 5 100 609 272536524 272536021 1.110000e-115 427.0
20 TraesCS1A01G399000 chr1D 85.606 264 35 2 3132 3395 470186269 470186529 1.530000e-69 274.0
21 TraesCS1A01G399000 chr1D 91.892 185 10 5 1 183 470126448 470126629 1.990000e-63 254.0
22 TraesCS1A01G399000 chr7A 82.101 514 84 6 104 611 142951035 142950524 2.380000e-117 433.0
23 TraesCS1A01G399000 chr3D 81.637 501 85 6 111 608 47748033 47748529 4.020000e-110 409.0
24 TraesCS1A01G399000 chr2D 81.336 509 90 5 104 611 344313486 344312982 4.020000e-110 409.0
25 TraesCS1A01G399000 chr2D 80.943 509 91 6 105 611 534162639 534163143 8.700000e-107 398.0
26 TraesCS1A01G399000 chr3B 80.980 510 91 5 106 611 186089051 186089558 2.420000e-107 399.0
27 TraesCS1A01G399000 chr3B 100.000 28 0 0 4009 4036 11633315 11633288 8.000000e-03 52.8
28 TraesCS1A01G399000 chr3B 91.892 37 3 0 4000 4036 781369833 781369869 8.000000e-03 52.8
29 TraesCS1A01G399000 chr6A 96.970 33 1 0 4009 4041 13463089 13463057 6.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G399000 chr1A 563767608 563771924 4316 False 7973.0 7973 100.000000 1 4317 1 chr1A.!!$F2 4316
1 TraesCS1A01G399000 chr1A 563695333 563696699 1366 False 1188.0 1188 82.814000 2054 3395 1 chr1A.!!$F1 1341
2 TraesCS1A01G399000 chr1A 563783608 563784832 1224 False 915.0 915 80.273000 2074 3314 1 chr1A.!!$F4 1240
3 TraesCS1A01G399000 chr1B 652518116 652520460 2344 False 1400.5 2671 93.484000 1582 3887 2 chr1B.!!$F4 2305
4 TraesCS1A01G399000 chr1B 652467474 652469046 1572 False 1321.0 1321 82.327000 1853 3395 1 chr1B.!!$F3 1542
5 TraesCS1A01G399000 chr1B 22398575 22399078 503 False 407.0 407 81.225000 106 611 1 chr1B.!!$F1 505
6 TraesCS1A01G399000 chr1B 22606681 22607184 503 False 396.0 396 80.830000 106 611 1 chr1B.!!$F2 505
7 TraesCS1A01G399000 chr1D 470180302 470181870 1568 False 1483.0 1483 84.147000 1855 3392 1 chr1D.!!$F3 1537
8 TraesCS1A01G399000 chr1D 470135046 470137115 2069 False 1300.5 2043 89.986000 1873 3887 2 chr1D.!!$F5 2014
9 TraesCS1A01G399000 chr1D 470084659 470086238 1579 False 1290.0 1290 81.886000 1998 3565 1 chr1D.!!$F2 1567
10 TraesCS1A01G399000 chr1D 470077538 470078797 1259 False 800.0 800 78.466000 2055 3329 1 chr1D.!!$F1 1274
11 TraesCS1A01G399000 chr1D 470126448 470128246 1798 False 697.0 1358 90.687333 1 1635 3 chr1D.!!$F4 1634
12 TraesCS1A01G399000 chr1D 470186269 470191174 4905 False 580.5 887 83.515500 2058 3395 2 chr1D.!!$F6 1337
13 TraesCS1A01G399000 chr1D 272536021 272536524 503 True 427.0 427 81.961000 100 609 1 chr1D.!!$R1 509
14 TraesCS1A01G399000 chr7A 142950524 142951035 511 True 433.0 433 82.101000 104 611 1 chr7A.!!$R1 507
15 TraesCS1A01G399000 chr2D 344312982 344313486 504 True 409.0 409 81.336000 104 611 1 chr2D.!!$R1 507
16 TraesCS1A01G399000 chr2D 534162639 534163143 504 False 398.0 398 80.943000 105 611 1 chr2D.!!$F1 506
17 TraesCS1A01G399000 chr3B 186089051 186089558 507 False 399.0 399 80.980000 106 611 1 chr3B.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 424 1.011968 CGGTCGGTGCTGATTTTCGA 61.012 55.0 0.0 0.00 0.0 3.71 F
1202 1447 0.665835 ATGAGAGAGATGGCGACGAC 59.334 55.0 0.0 0.00 0.0 4.34 F
2040 2348 0.028902 GCGGCAGAAAAACGTTGTCT 59.971 50.0 0.0 5.15 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1622 0.107703 TCGCTGCCAGGATACAAAGG 60.108 55.0 0.00 0.0 41.41 3.11 R
3022 5829 0.320334 TCCATCGCGAGTGCTCAAAA 60.320 50.0 16.66 0.0 39.65 2.44 R
3986 6844 0.034283 GACCAGTCGGAGGGAGTAGT 60.034 60.0 2.85 0.0 35.59 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 127 5.124036 TCTTTCCTCCTCCACAAGAAAAA 57.876 39.130 0.00 0.00 0.00 1.94
212 217 4.924187 CGGAGGATCTCGGCCCCT 62.924 72.222 0.00 0.00 33.73 4.79
328 338 1.143183 CCCACGTTCTATCCCCACG 59.857 63.158 0.00 0.00 39.86 4.94
351 361 2.686405 TGATGGTGCGTCTAGTATCGTT 59.314 45.455 0.00 0.00 0.00 3.85
414 424 1.011968 CGGTCGGTGCTGATTTTCGA 61.012 55.000 0.00 0.00 0.00 3.71
418 428 3.187700 GTCGGTGCTGATTTTCGATAGT 58.812 45.455 0.00 0.00 37.40 2.12
498 508 6.775594 TTCGATCTAGGACTTTCTTCATCA 57.224 37.500 0.00 0.00 0.00 3.07
531 541 2.143925 GCTCTGGTGTGTTGGTCTTAC 58.856 52.381 0.00 0.00 0.00 2.34
546 556 1.822990 TCTTACGGGGTCTTAGCACAG 59.177 52.381 0.00 0.00 0.00 3.66
611 621 3.728373 GGGAGGGGCAATGACGGT 61.728 66.667 0.00 0.00 0.00 4.83
612 622 2.124695 GGAGGGGCAATGACGGTC 60.125 66.667 0.00 0.00 0.00 4.79
619 853 1.092348 GGCAATGACGGTCTTAACCC 58.908 55.000 9.88 1.53 43.21 4.11
635 869 7.497579 GGTCTTAACCCATTTTGTTTGTGAAAT 59.502 33.333 0.00 0.00 39.93 2.17
641 875 6.997476 ACCCATTTTGTTTGTGAAATTAGCAT 59.003 30.769 0.00 0.00 0.00 3.79
803 1042 7.768582 CCACACTGACAACATATTAGAACCATA 59.231 37.037 0.00 0.00 0.00 2.74
837 1076 9.793252 ATATTTATGAAGAAAATCACAGCACAC 57.207 29.630 0.00 0.00 30.82 3.82
850 1089 2.425312 ACAGCACACGAATTTGTTCCAA 59.575 40.909 0.00 0.00 0.00 3.53
858 1097 9.509855 GCACACGAATTTGTTCCAATTATATTA 57.490 29.630 0.00 0.00 0.00 0.98
894 1133 5.163652 GGAAATTATTTTCTCTCCCACACGG 60.164 44.000 9.34 0.00 40.91 4.94
910 1155 2.993899 ACACGGAGCGCTAATTATATGC 59.006 45.455 11.50 0.00 0.00 3.14
1032 1277 1.956477 GGCAGACAAAGGATGTGTTGT 59.044 47.619 0.00 0.00 36.03 3.32
1044 1289 3.368013 GGATGTGTTGTCCATGTCGTAGA 60.368 47.826 0.00 0.00 35.76 2.59
1045 1290 3.953712 TGTGTTGTCCATGTCGTAGAT 57.046 42.857 0.00 0.00 40.67 1.98
1046 1291 3.584834 TGTGTTGTCCATGTCGTAGATG 58.415 45.455 0.00 0.00 40.67 2.90
1047 1292 3.006430 TGTGTTGTCCATGTCGTAGATGT 59.994 43.478 0.00 0.00 40.67 3.06
1048 1293 3.367932 GTGTTGTCCATGTCGTAGATGTG 59.632 47.826 0.00 0.00 40.67 3.21
1049 1294 2.930040 GTTGTCCATGTCGTAGATGTGG 59.070 50.000 0.00 0.00 42.66 4.17
1050 1295 2.452505 TGTCCATGTCGTAGATGTGGA 58.547 47.619 0.00 0.00 45.87 4.02
1052 1297 3.012934 TCCATGTCGTAGATGTGGAGA 57.987 47.619 0.00 0.00 44.18 3.71
1084 1329 9.918630 AGAATGGTAAGAACAAAGATGAATTTG 57.081 29.630 0.00 0.00 44.14 2.32
1119 1364 3.010250 GGAAGAGGGGTTTTAGTGATGGT 59.990 47.826 0.00 0.00 0.00 3.55
1126 1371 4.274214 GGGGTTTTAGTGATGGTTATACGC 59.726 45.833 0.00 0.00 0.00 4.42
1153 1398 3.096852 ACATAACACGGTGAGGATCTGA 58.903 45.455 16.29 0.00 34.92 3.27
1170 1415 1.245376 TGACGGCAGTGACGATACCA 61.245 55.000 28.44 13.94 35.20 3.25
1196 1441 6.465948 AGATGTTCATAATGAGAGAGATGGC 58.534 40.000 0.00 0.00 0.00 4.40
1202 1447 0.665835 ATGAGAGAGATGGCGACGAC 59.334 55.000 0.00 0.00 0.00 4.34
1218 1463 1.512230 GACGCACATGTACCGGGTA 59.488 57.895 18.54 1.88 0.00 3.69
1223 1468 1.465777 GCACATGTACCGGGTAAACAC 59.534 52.381 8.81 0.00 0.00 3.32
1298 1543 8.267620 AGAATATAAGGAGATGTTGGATGACA 57.732 34.615 0.00 0.00 0.00 3.58
1310 1555 3.849563 TGGATGACATGCATGATCAGA 57.150 42.857 32.75 15.71 37.34 3.27
1327 1572 3.405831 TCAGATGGTGCAAGACAGAAAG 58.594 45.455 0.00 0.00 0.00 2.62
1357 1602 6.560253 TGAGGTAGAAAAGTTTGAGCAATC 57.440 37.500 0.00 0.00 0.00 2.67
1362 1607 6.071952 GGTAGAAAAGTTTGAGCAATCATCCA 60.072 38.462 0.00 0.00 0.00 3.41
1368 1613 4.960469 AGTTTGAGCAATCATCCATGGAAT 59.040 37.500 20.67 5.72 0.00 3.01
1369 1614 5.424252 AGTTTGAGCAATCATCCATGGAATT 59.576 36.000 20.67 12.29 0.00 2.17
1370 1615 4.929819 TGAGCAATCATCCATGGAATTG 57.070 40.909 25.53 25.53 0.00 2.32
1371 1616 4.283337 TGAGCAATCATCCATGGAATTGT 58.717 39.130 28.11 19.53 0.00 2.71
1372 1617 5.447757 TGAGCAATCATCCATGGAATTGTA 58.552 37.500 28.11 17.84 0.00 2.41
1373 1618 5.892686 TGAGCAATCATCCATGGAATTGTAA 59.107 36.000 28.11 17.25 0.00 2.41
1374 1619 6.380560 TGAGCAATCATCCATGGAATTGTAAA 59.619 34.615 28.11 17.00 0.00 2.01
1375 1620 6.576185 AGCAATCATCCATGGAATTGTAAAC 58.424 36.000 28.11 17.47 0.00 2.01
1376 1621 5.754890 GCAATCATCCATGGAATTGTAAACC 59.245 40.000 28.11 15.01 0.00 3.27
1377 1622 6.282930 CAATCATCCATGGAATTGTAAACCC 58.717 40.000 23.06 0.00 0.00 4.11
1378 1623 4.285863 TCATCCATGGAATTGTAAACCCC 58.714 43.478 20.67 0.00 0.00 4.95
1379 1624 4.016666 TCATCCATGGAATTGTAAACCCCT 60.017 41.667 20.67 0.00 0.00 4.79
1380 1625 4.412060 TCCATGGAATTGTAAACCCCTT 57.588 40.909 13.46 0.00 0.00 3.95
1381 1626 4.757692 TCCATGGAATTGTAAACCCCTTT 58.242 39.130 13.46 0.00 0.00 3.11
1382 1627 4.530161 TCCATGGAATTGTAAACCCCTTTG 59.470 41.667 13.46 0.00 0.00 2.77
1383 1628 4.285775 CCATGGAATTGTAAACCCCTTTGT 59.714 41.667 5.56 0.00 0.00 2.83
1466 1712 3.853355 AAACAATCCACAATTTGGCCA 57.147 38.095 0.00 0.00 46.47 5.36
1475 1721 3.488890 CCACAATTTGGCCAAACAAAAGC 60.489 43.478 32.62 0.00 42.91 3.51
1479 1725 0.526524 TTGGCCAAACAAAAGCGTCG 60.527 50.000 17.98 0.00 0.00 5.12
1492 1738 4.539509 AAAGCGTCGACACATTGTTAAA 57.460 36.364 17.16 0.00 0.00 1.52
1654 1903 6.642540 GGTTTTAAGATGCTGTTTTCCAAGAG 59.357 38.462 0.00 0.00 0.00 2.85
1681 1956 4.185286 GCCGATTAAGGGCCCGGT 62.185 66.667 18.44 11.65 44.97 5.28
1716 1991 2.821366 GGCTGCACACATCCCTCG 60.821 66.667 0.50 0.00 0.00 4.63
1740 2015 2.922740 TTACCCTCAGTTGGTCACAC 57.077 50.000 0.00 0.00 37.31 3.82
1743 2018 0.180171 CCCTCAGTTGGTCACACACA 59.820 55.000 0.00 0.00 0.00 3.72
1744 2019 1.408127 CCCTCAGTTGGTCACACACAA 60.408 52.381 0.00 0.00 0.00 3.33
1745 2020 2.364632 CCTCAGTTGGTCACACACAAA 58.635 47.619 0.00 0.00 0.00 2.83
1746 2021 2.752354 CCTCAGTTGGTCACACACAAAA 59.248 45.455 0.00 0.00 0.00 2.44
1747 2022 3.192422 CCTCAGTTGGTCACACACAAAAA 59.808 43.478 0.00 0.00 0.00 1.94
1804 2079 1.003233 GGGAAGCCACACTCCACTC 60.003 63.158 0.00 0.00 0.00 3.51
1811 2086 3.626924 ACACTCCACTCCGGCACC 61.627 66.667 0.00 0.00 33.14 5.01
1950 2244 0.106868 TCTTCCCTCGATCGCCTACA 60.107 55.000 11.09 0.00 0.00 2.74
1962 2267 1.306226 GCCTACAGGGGGTGTCTCT 60.306 63.158 0.00 0.00 40.94 3.10
2039 2347 1.259544 CGCGGCAGAAAAACGTTGTC 61.260 55.000 0.00 2.49 0.00 3.18
2040 2348 0.028902 GCGGCAGAAAAACGTTGTCT 59.971 50.000 0.00 5.15 0.00 3.41
2079 4850 5.734220 GCTGATGTTGTTTCTTCTTTGCAGA 60.734 40.000 0.00 0.00 0.00 4.26
2081 4852 6.808829 TGATGTTGTTTCTTCTTTGCAGAAT 58.191 32.000 0.00 0.00 38.42 2.40
2144 4917 4.008933 GGTCAGACCTGCCGCTGT 62.009 66.667 12.94 0.00 34.73 4.40
2255 5031 1.601171 CAGAAGCTCCAGACCCCTG 59.399 63.158 0.00 0.00 40.09 4.45
2257 5033 3.672295 GAAGCTCCAGACCCCTGCG 62.672 68.421 0.00 0.00 39.07 5.18
2312 5089 5.026121 TCTACAGCATCCCCTATGATAAGG 58.974 45.833 0.00 0.00 37.86 2.69
2522 5302 3.314357 GTCAAAATATGCCGACCCTTACC 59.686 47.826 0.00 0.00 0.00 2.85
2623 5403 1.885850 GGTCGGCGTTCAACACACT 60.886 57.895 6.85 0.00 0.00 3.55
2849 5647 4.451900 CAAGGCGGATTTCAGGTTATACT 58.548 43.478 0.00 0.00 0.00 2.12
2856 5654 6.565999 GCGGATTTCAGGTTATACTATGTTGC 60.566 42.308 0.00 0.00 0.00 4.17
2945 5752 2.128771 ACGCAGGAATATTTGGTGCT 57.871 45.000 12.89 2.17 31.74 4.40
2957 5764 3.586470 TTTGGTGCTAGGTTCCTGAAA 57.414 42.857 1.12 0.00 0.00 2.69
2982 5789 1.153349 CTGGAGGGCCTCGTAAAGC 60.153 63.158 26.54 12.49 34.31 3.51
3022 5829 5.184892 AGTTTGAGGTATTTGAGGCTGAT 57.815 39.130 0.00 0.00 0.00 2.90
3065 5872 1.052124 GGTGTCGACCATGGGGGATA 61.052 60.000 18.09 8.15 42.59 2.59
3203 6010 2.225963 AGTTACGTCGAGGAGAACACAG 59.774 50.000 21.04 0.00 0.00 3.66
3204 6011 2.174363 TACGTCGAGGAGAACACAGA 57.826 50.000 12.85 0.00 0.00 3.41
3355 6168 7.542890 CATTGTTGTTGGGTTGTTGCTATATA 58.457 34.615 0.00 0.00 0.00 0.86
3356 6169 7.710676 TTGTTGTTGGGTTGTTGCTATATAT 57.289 32.000 0.00 0.00 0.00 0.86
3371 6185 7.055667 TGCTATATATAAGCTACTCCCATGC 57.944 40.000 14.13 0.00 40.73 4.06
3385 6199 1.154197 CCATGCTATCTGACCATGCG 58.846 55.000 8.46 0.00 36.04 4.73
3403 6217 6.039717 ACCATGCGATAGATGTTTATTTTGCT 59.960 34.615 0.00 0.00 39.76 3.91
3404 6218 6.361481 CCATGCGATAGATGTTTATTTTGCTG 59.639 38.462 0.00 0.00 39.76 4.41
3422 6236 1.741706 CTGGCTGCTCACAGGTTAATG 59.258 52.381 0.00 0.00 44.63 1.90
3423 6237 1.098050 GGCTGCTCACAGGTTAATGG 58.902 55.000 0.00 0.00 44.63 3.16
3451 6294 1.376424 CGGTGGTCTCATGCAAGCT 60.376 57.895 0.00 0.00 0.00 3.74
3464 6307 1.606189 TGCAAGCTGTGAAATGCGTTA 59.394 42.857 1.66 0.00 41.61 3.18
3495 6345 2.541588 GCTTATGCCGTTAGTTGCCATG 60.542 50.000 0.00 0.00 0.00 3.66
3519 6370 7.390823 TGTGTATCAGTAAATTGCCTGAACTA 58.609 34.615 10.39 0.00 40.81 2.24
3529 6380 7.480760 AAATTGCCTGAACTAAATATGGTGT 57.519 32.000 0.00 0.00 0.00 4.16
3547 6398 4.759693 TGGTGTTTACTATGGAAGCTGTTG 59.240 41.667 0.00 0.00 0.00 3.33
3551 6402 5.932303 TGTTTACTATGGAAGCTGTTGACTC 59.068 40.000 0.00 0.00 0.00 3.36
3565 6416 5.755813 CTGTTGACTCCATCAGTTTTCAAG 58.244 41.667 0.00 0.00 38.99 3.02
3568 6419 6.260050 TGTTGACTCCATCAGTTTTCAAGTAC 59.740 38.462 0.00 0.00 38.99 2.73
3569 6420 5.924356 TGACTCCATCAGTTTTCAAGTACA 58.076 37.500 0.00 0.00 34.41 2.90
3571 6422 6.998074 TGACTCCATCAGTTTTCAAGTACAAT 59.002 34.615 0.00 0.00 34.41 2.71
3585 6436 6.000840 TCAAGTACAATTGTGGTCATTGCTA 58.999 36.000 21.42 0.00 0.00 3.49
3590 6441 4.766373 ACAATTGTGGTCATTGCTATGTCA 59.234 37.500 11.07 5.63 33.34 3.58
3593 6444 4.817318 TGTGGTCATTGCTATGTCAGTA 57.183 40.909 8.01 0.00 33.34 2.74
3632 6483 6.840075 GCATCATTGCTTATCTGTATCTTCC 58.160 40.000 0.00 0.00 45.77 3.46
3638 6489 5.972935 TGCTTATCTGTATCTTCCGTTTGA 58.027 37.500 0.00 0.00 0.00 2.69
3643 6494 9.914131 CTTATCTGTATCTTCCGTTTGATGATA 57.086 33.333 0.00 0.00 38.45 2.15
3645 6496 8.994429 ATCTGTATCTTCCGTTTGATGATATC 57.006 34.615 0.00 0.00 40.33 1.63
3646 6497 7.951591 TCTGTATCTTCCGTTTGATGATATCA 58.048 34.615 8.10 8.10 40.33 2.15
3674 6531 5.565592 TGCGATAATTTTGCACTCTGAAT 57.434 34.783 0.00 0.00 39.94 2.57
3679 6536 7.471721 CGATAATTTTGCACTCTGAATTGGTA 58.528 34.615 0.00 0.00 0.00 3.25
3690 6547 5.105997 ACTCTGAATTGGTAGATTTGCTTGC 60.106 40.000 0.00 0.00 0.00 4.01
3699 6556 1.139163 GATTTGCTTGCGTGGTTTGG 58.861 50.000 0.00 0.00 0.00 3.28
3741 6599 6.529829 GTCACTGCTTGAGAGTAGTTTATCTG 59.470 42.308 0.00 0.00 45.09 2.90
3745 6603 5.047021 TGCTTGAGAGTAGTTTATCTGTGCT 60.047 40.000 0.00 0.00 0.00 4.40
3763 6621 1.795768 CTGCCGCAGTTACTTTCTCA 58.204 50.000 12.54 0.00 0.00 3.27
3764 6622 1.728971 CTGCCGCAGTTACTTTCTCAG 59.271 52.381 12.54 0.00 0.00 3.35
3765 6623 0.444260 GCCGCAGTTACTTTCTCAGC 59.556 55.000 0.00 0.00 0.00 4.26
3766 6624 1.079503 CCGCAGTTACTTTCTCAGCC 58.920 55.000 0.00 0.00 0.00 4.85
3775 6633 0.322906 CTTTCTCAGCCCCCTTCACC 60.323 60.000 0.00 0.00 0.00 4.02
3777 6635 4.101448 CTCAGCCCCCTTCACCGG 62.101 72.222 0.00 0.00 0.00 5.28
3802 6660 7.757624 GGTCAAAGGCGACATAAATTGAAATTA 59.242 33.333 0.00 0.00 37.66 1.40
3809 6667 7.059488 GGCGACATAAATTGAAATTACTATGCG 59.941 37.037 7.11 10.55 31.39 4.73
3876 6734 4.574599 ACAAAGTTGTGATGAGCCTTTC 57.425 40.909 0.00 0.00 40.49 2.62
3878 6736 4.646492 ACAAAGTTGTGATGAGCCTTTCTT 59.354 37.500 0.00 0.00 40.49 2.52
3881 6739 5.192327 AGTTGTGATGAGCCTTTCTTTTG 57.808 39.130 0.00 0.00 0.00 2.44
3887 6745 6.939730 TGTGATGAGCCTTTCTTTTGTGTATA 59.060 34.615 0.00 0.00 0.00 1.47
3888 6746 7.446931 TGTGATGAGCCTTTCTTTTGTGTATAA 59.553 33.333 0.00 0.00 0.00 0.98
3889 6747 8.462016 GTGATGAGCCTTTCTTTTGTGTATAAT 58.538 33.333 0.00 0.00 0.00 1.28
3890 6748 8.677300 TGATGAGCCTTTCTTTTGTGTATAATC 58.323 33.333 0.00 0.00 0.00 1.75
3891 6749 7.072177 TGAGCCTTTCTTTTGTGTATAATCG 57.928 36.000 0.00 0.00 0.00 3.34
3892 6750 6.653320 TGAGCCTTTCTTTTGTGTATAATCGT 59.347 34.615 0.00 0.00 0.00 3.73
3893 6751 6.842163 AGCCTTTCTTTTGTGTATAATCGTG 58.158 36.000 0.00 0.00 0.00 4.35
3894 6752 6.653320 AGCCTTTCTTTTGTGTATAATCGTGA 59.347 34.615 0.00 0.00 0.00 4.35
3895 6753 7.336931 AGCCTTTCTTTTGTGTATAATCGTGAT 59.663 33.333 0.00 0.00 0.00 3.06
3896 6754 7.429340 GCCTTTCTTTTGTGTATAATCGTGATG 59.571 37.037 0.00 0.00 0.00 3.07
3897 6755 8.664798 CCTTTCTTTTGTGTATAATCGTGATGA 58.335 33.333 0.00 0.00 0.00 2.92
3898 6756 9.694520 CTTTCTTTTGTGTATAATCGTGATGAG 57.305 33.333 0.00 0.00 0.00 2.90
3899 6757 7.234187 TCTTTTGTGTATAATCGTGATGAGC 57.766 36.000 0.00 0.00 0.00 4.26
3900 6758 5.984233 TTTGTGTATAATCGTGATGAGCC 57.016 39.130 0.00 0.00 0.00 4.70
3901 6759 4.937201 TGTGTATAATCGTGATGAGCCT 57.063 40.909 0.00 0.00 0.00 4.58
3902 6760 5.276461 TGTGTATAATCGTGATGAGCCTT 57.724 39.130 0.00 0.00 0.00 4.35
3903 6761 6.399639 TGTGTATAATCGTGATGAGCCTTA 57.600 37.500 0.00 0.00 0.00 2.69
3904 6762 6.993079 TGTGTATAATCGTGATGAGCCTTAT 58.007 36.000 0.00 0.00 0.00 1.73
3905 6763 6.868339 TGTGTATAATCGTGATGAGCCTTATG 59.132 38.462 0.00 0.00 0.00 1.90
3906 6764 6.868864 GTGTATAATCGTGATGAGCCTTATGT 59.131 38.462 0.00 0.00 0.00 2.29
3907 6765 8.027189 GTGTATAATCGTGATGAGCCTTATGTA 58.973 37.037 0.00 0.00 0.00 2.29
3908 6766 8.244113 TGTATAATCGTGATGAGCCTTATGTAG 58.756 37.037 0.00 0.00 0.00 2.74
3909 6767 3.371102 TCGTGATGAGCCTTATGTAGC 57.629 47.619 0.00 0.00 0.00 3.58
3910 6768 2.959030 TCGTGATGAGCCTTATGTAGCT 59.041 45.455 0.00 0.00 43.55 3.32
3911 6769 3.055591 CGTGATGAGCCTTATGTAGCTG 58.944 50.000 0.00 0.00 40.11 4.24
3912 6770 3.491619 CGTGATGAGCCTTATGTAGCTGT 60.492 47.826 0.00 0.00 40.11 4.40
3913 6771 3.806521 GTGATGAGCCTTATGTAGCTGTG 59.193 47.826 0.00 0.00 40.11 3.66
3914 6772 2.315925 TGAGCCTTATGTAGCTGTGC 57.684 50.000 0.00 0.00 40.11 4.57
3915 6773 1.833630 TGAGCCTTATGTAGCTGTGCT 59.166 47.619 0.00 0.00 40.11 4.40
3916 6774 2.237143 TGAGCCTTATGTAGCTGTGCTT 59.763 45.455 0.00 0.00 40.11 3.91
3917 6775 2.611292 GAGCCTTATGTAGCTGTGCTTG 59.389 50.000 0.00 0.00 40.11 4.01
3918 6776 2.237143 AGCCTTATGTAGCTGTGCTTGA 59.763 45.455 0.00 0.00 40.44 3.02
3919 6777 2.352960 GCCTTATGTAGCTGTGCTTGAC 59.647 50.000 0.00 0.00 40.44 3.18
3920 6778 2.939103 CCTTATGTAGCTGTGCTTGACC 59.061 50.000 0.00 0.00 40.44 4.02
3921 6779 3.599343 CTTATGTAGCTGTGCTTGACCA 58.401 45.455 0.00 0.00 40.44 4.02
3922 6780 2.566833 ATGTAGCTGTGCTTGACCAA 57.433 45.000 0.00 0.00 40.44 3.67
3923 6781 1.882912 TGTAGCTGTGCTTGACCAAG 58.117 50.000 0.00 5.44 40.44 3.61
3937 6795 5.981174 CTTGACCAAGCATGAATGTTTTTG 58.019 37.500 0.00 0.00 0.00 2.44
3938 6796 4.378774 TGACCAAGCATGAATGTTTTTGG 58.621 39.130 15.57 15.57 39.50 3.28
3939 6797 4.100653 TGACCAAGCATGAATGTTTTTGGA 59.899 37.500 20.34 5.93 38.29 3.53
3940 6798 5.221682 TGACCAAGCATGAATGTTTTTGGAT 60.222 36.000 20.34 10.93 38.29 3.41
3941 6799 4.998672 ACCAAGCATGAATGTTTTTGGATG 59.001 37.500 20.34 0.00 38.29 3.51
3942 6800 5.221682 ACCAAGCATGAATGTTTTTGGATGA 60.222 36.000 20.34 0.00 38.29 2.92
3943 6801 5.350365 CCAAGCATGAATGTTTTTGGATGAG 59.650 40.000 0.00 0.00 37.72 2.90
3944 6802 5.733620 AGCATGAATGTTTTTGGATGAGT 57.266 34.783 0.00 0.00 0.00 3.41
3945 6803 5.475719 AGCATGAATGTTTTTGGATGAGTG 58.524 37.500 0.00 0.00 0.00 3.51
3946 6804 4.092383 GCATGAATGTTTTTGGATGAGTGC 59.908 41.667 0.00 0.00 0.00 4.40
3947 6805 4.933505 TGAATGTTTTTGGATGAGTGCA 57.066 36.364 0.00 0.00 0.00 4.57
3948 6806 4.873817 TGAATGTTTTTGGATGAGTGCAG 58.126 39.130 0.00 0.00 0.00 4.41
3949 6807 4.341806 TGAATGTTTTTGGATGAGTGCAGT 59.658 37.500 0.00 0.00 0.00 4.40
3950 6808 4.942761 ATGTTTTTGGATGAGTGCAGTT 57.057 36.364 0.00 0.00 0.00 3.16
3951 6809 4.734398 TGTTTTTGGATGAGTGCAGTTT 57.266 36.364 0.00 0.00 0.00 2.66
3952 6810 4.431809 TGTTTTTGGATGAGTGCAGTTTG 58.568 39.130 0.00 0.00 0.00 2.93
3953 6811 4.081752 TGTTTTTGGATGAGTGCAGTTTGT 60.082 37.500 0.00 0.00 0.00 2.83
3954 6812 4.734398 TTTTGGATGAGTGCAGTTTGTT 57.266 36.364 0.00 0.00 0.00 2.83
3955 6813 5.843673 TTTTGGATGAGTGCAGTTTGTTA 57.156 34.783 0.00 0.00 0.00 2.41
3956 6814 5.843673 TTTGGATGAGTGCAGTTTGTTAA 57.156 34.783 0.00 0.00 0.00 2.01
3957 6815 5.843673 TTGGATGAGTGCAGTTTGTTAAA 57.156 34.783 0.00 0.00 0.00 1.52
3958 6816 5.843673 TGGATGAGTGCAGTTTGTTAAAA 57.156 34.783 0.00 0.00 0.00 1.52
3959 6817 5.830912 TGGATGAGTGCAGTTTGTTAAAAG 58.169 37.500 0.00 0.00 0.00 2.27
3960 6818 5.221224 TGGATGAGTGCAGTTTGTTAAAAGG 60.221 40.000 0.00 0.00 0.00 3.11
3961 6819 4.647424 TGAGTGCAGTTTGTTAAAAGGG 57.353 40.909 0.00 0.00 0.00 3.95
3962 6820 4.274147 TGAGTGCAGTTTGTTAAAAGGGA 58.726 39.130 0.00 0.00 0.00 4.20
3963 6821 4.892934 TGAGTGCAGTTTGTTAAAAGGGAT 59.107 37.500 0.00 0.00 0.00 3.85
3964 6822 5.009610 TGAGTGCAGTTTGTTAAAAGGGATC 59.990 40.000 0.00 0.00 0.00 3.36
3965 6823 4.892934 AGTGCAGTTTGTTAAAAGGGATCA 59.107 37.500 0.00 0.00 0.00 2.92
3966 6824 5.539955 AGTGCAGTTTGTTAAAAGGGATCAT 59.460 36.000 0.00 0.00 0.00 2.45
3967 6825 6.719370 AGTGCAGTTTGTTAAAAGGGATCATA 59.281 34.615 0.00 0.00 0.00 2.15
3968 6826 7.397192 AGTGCAGTTTGTTAAAAGGGATCATAT 59.603 33.333 0.00 0.00 0.00 1.78
3969 6827 7.489113 GTGCAGTTTGTTAAAAGGGATCATATG 59.511 37.037 0.00 0.00 0.00 1.78
3970 6828 7.395772 TGCAGTTTGTTAAAAGGGATCATATGA 59.604 33.333 8.10 8.10 0.00 2.15
3971 6829 8.250332 GCAGTTTGTTAAAAGGGATCATATGAA 58.750 33.333 9.99 0.00 0.00 2.57
3974 6832 9.533253 GTTTGTTAAAAGGGATCATATGAATGG 57.467 33.333 9.99 0.00 33.61 3.16
3975 6833 7.838079 TGTTAAAAGGGATCATATGAATGGG 57.162 36.000 9.99 0.00 33.61 4.00
3976 6834 7.590907 TGTTAAAAGGGATCATATGAATGGGA 58.409 34.615 9.99 0.00 33.61 4.37
3977 6835 7.725397 TGTTAAAAGGGATCATATGAATGGGAG 59.275 37.037 9.99 0.00 33.61 4.30
3978 6836 4.313020 AAGGGATCATATGAATGGGAGC 57.687 45.455 9.99 0.00 33.61 4.70
3979 6837 3.262842 AGGGATCATATGAATGGGAGCA 58.737 45.455 9.99 0.00 33.61 4.26
3980 6838 3.009916 AGGGATCATATGAATGGGAGCAC 59.990 47.826 9.99 0.00 33.61 4.40
3981 6839 3.009916 GGGATCATATGAATGGGAGCACT 59.990 47.826 9.99 0.00 33.61 4.40
3982 6840 4.008330 GGATCATATGAATGGGAGCACTG 58.992 47.826 9.99 0.00 33.61 3.66
3983 6841 4.506271 GGATCATATGAATGGGAGCACTGT 60.506 45.833 9.99 0.00 33.61 3.55
3984 6842 4.508551 TCATATGAATGGGAGCACTGTT 57.491 40.909 1.98 0.00 33.61 3.16
3985 6843 5.628797 TCATATGAATGGGAGCACTGTTA 57.371 39.130 1.98 0.00 33.61 2.41
3986 6844 6.000246 TCATATGAATGGGAGCACTGTTAA 58.000 37.500 1.98 0.00 33.61 2.01
3987 6845 5.822519 TCATATGAATGGGAGCACTGTTAAC 59.177 40.000 1.98 0.00 33.61 2.01
3988 6846 3.788227 TGAATGGGAGCACTGTTAACT 57.212 42.857 7.22 0.00 0.00 2.24
3989 6847 4.901197 TGAATGGGAGCACTGTTAACTA 57.099 40.909 7.22 0.00 0.00 2.24
3990 6848 4.575885 TGAATGGGAGCACTGTTAACTAC 58.424 43.478 7.22 0.00 0.00 2.73
3991 6849 4.286032 TGAATGGGAGCACTGTTAACTACT 59.714 41.667 7.22 0.00 0.00 2.57
3992 6850 3.955650 TGGGAGCACTGTTAACTACTC 57.044 47.619 7.22 7.93 0.00 2.59
3993 6851 2.565834 TGGGAGCACTGTTAACTACTCC 59.434 50.000 19.72 19.72 42.42 3.85
3994 6852 3.248495 GGAGCACTGTTAACTACTCCC 57.752 52.381 18.29 6.63 38.18 4.30
3995 6853 2.832733 GGAGCACTGTTAACTACTCCCT 59.167 50.000 18.29 5.21 38.18 4.20
3996 6854 3.119065 GGAGCACTGTTAACTACTCCCTC 60.119 52.174 18.29 11.49 38.18 4.30
3997 6855 2.832733 AGCACTGTTAACTACTCCCTCC 59.167 50.000 7.22 0.00 0.00 4.30
3998 6856 2.416972 GCACTGTTAACTACTCCCTCCG 60.417 54.545 7.22 0.00 0.00 4.63
3999 6857 3.087031 CACTGTTAACTACTCCCTCCGA 58.913 50.000 7.22 0.00 0.00 4.55
4000 6858 3.087781 ACTGTTAACTACTCCCTCCGAC 58.912 50.000 7.22 0.00 0.00 4.79
4001 6859 3.245193 ACTGTTAACTACTCCCTCCGACT 60.245 47.826 7.22 0.00 0.00 4.18
4002 6860 3.087031 TGTTAACTACTCCCTCCGACTG 58.913 50.000 7.22 0.00 0.00 3.51
4003 6861 2.426381 GTTAACTACTCCCTCCGACTGG 59.574 54.545 0.00 0.00 0.00 4.00
4004 6862 0.408700 AACTACTCCCTCCGACTGGT 59.591 55.000 0.00 0.00 36.30 4.00
4005 6863 0.034283 ACTACTCCCTCCGACTGGTC 60.034 60.000 0.00 0.00 36.30 4.02
4006 6864 0.256464 CTACTCCCTCCGACTGGTCT 59.744 60.000 0.00 0.00 36.30 3.85
4007 6865 0.702902 TACTCCCTCCGACTGGTCTT 59.297 55.000 0.00 0.00 36.30 3.01
4008 6866 0.702902 ACTCCCTCCGACTGGTCTTA 59.297 55.000 0.00 0.00 36.30 2.10
4009 6867 1.076677 ACTCCCTCCGACTGGTCTTAA 59.923 52.381 0.00 0.00 36.30 1.85
4010 6868 2.176889 CTCCCTCCGACTGGTCTTAAA 58.823 52.381 0.00 0.00 36.30 1.52
4011 6869 2.565834 CTCCCTCCGACTGGTCTTAAAA 59.434 50.000 0.00 0.00 36.30 1.52
4012 6870 2.974099 TCCCTCCGACTGGTCTTAAAAA 59.026 45.455 0.00 0.00 36.30 1.94
4036 6894 9.886132 AAAACGTCTTACATTATAGGATGAAGT 57.114 29.630 0.00 0.00 0.00 3.01
4065 6923 4.497291 TTTTATTCATACGTGCCCTCCT 57.503 40.909 0.00 0.00 0.00 3.69
4066 6924 4.497291 TTTATTCATACGTGCCCTCCTT 57.503 40.909 0.00 0.00 0.00 3.36
4067 6925 4.497291 TTATTCATACGTGCCCTCCTTT 57.503 40.909 0.00 0.00 0.00 3.11
4068 6926 2.871096 TTCATACGTGCCCTCCTTTT 57.129 45.000 0.00 0.00 0.00 2.27
4069 6927 2.107950 TCATACGTGCCCTCCTTTTG 57.892 50.000 0.00 0.00 0.00 2.44
4070 6928 0.451783 CATACGTGCCCTCCTTTTGC 59.548 55.000 0.00 0.00 0.00 3.68
4071 6929 0.328258 ATACGTGCCCTCCTTTTGCT 59.672 50.000 0.00 0.00 0.00 3.91
4072 6930 0.109723 TACGTGCCCTCCTTTTGCTT 59.890 50.000 0.00 0.00 0.00 3.91
4073 6931 1.286880 CGTGCCCTCCTTTTGCTTG 59.713 57.895 0.00 0.00 0.00 4.01
4074 6932 1.667722 GTGCCCTCCTTTTGCTTGG 59.332 57.895 0.00 0.00 0.00 3.61
4075 6933 1.115326 GTGCCCTCCTTTTGCTTGGT 61.115 55.000 0.00 0.00 0.00 3.67
4076 6934 0.827507 TGCCCTCCTTTTGCTTGGTC 60.828 55.000 0.00 0.00 0.00 4.02
4077 6935 1.866853 GCCCTCCTTTTGCTTGGTCG 61.867 60.000 0.00 0.00 0.00 4.79
4078 6936 1.581447 CCTCCTTTTGCTTGGTCGC 59.419 57.895 0.00 0.00 0.00 5.19
4079 6937 1.581447 CTCCTTTTGCTTGGTCGCC 59.419 57.895 0.00 0.00 0.00 5.54
4080 6938 1.866853 CTCCTTTTGCTTGGTCGCCC 61.867 60.000 0.00 0.00 0.00 6.13
4081 6939 2.199652 CCTTTTGCTTGGTCGCCCA 61.200 57.895 0.00 0.00 39.65 5.36
4090 6948 3.802862 TGGTCGCCCAAAAACTACA 57.197 47.368 0.00 0.00 37.98 2.74
4091 6949 2.054232 TGGTCGCCCAAAAACTACAA 57.946 45.000 0.00 0.00 37.98 2.41
4092 6950 2.588620 TGGTCGCCCAAAAACTACAAT 58.411 42.857 0.00 0.00 37.98 2.71
4093 6951 2.959707 TGGTCGCCCAAAAACTACAATT 59.040 40.909 0.00 0.00 37.98 2.32
4094 6952 3.385111 TGGTCGCCCAAAAACTACAATTT 59.615 39.130 0.00 0.00 37.98 1.82
4095 6953 3.738791 GGTCGCCCAAAAACTACAATTTG 59.261 43.478 0.00 0.00 36.52 2.32
4096 6954 4.364860 GTCGCCCAAAAACTACAATTTGT 58.635 39.130 7.30 7.30 35.30 2.83
4097 6955 4.806775 GTCGCCCAAAAACTACAATTTGTT 59.193 37.500 7.45 0.00 35.30 2.83
4098 6956 5.292345 GTCGCCCAAAAACTACAATTTGTTT 59.708 36.000 7.45 0.00 37.92 2.83
4099 6957 5.875359 TCGCCCAAAAACTACAATTTGTTTT 59.125 32.000 7.45 0.48 44.91 2.43
4101 6959 6.684979 CGCCCAAAAACTACAATTTGTTTTTC 59.315 34.615 7.45 9.85 46.72 2.29
4102 6960 6.970043 GCCCAAAAACTACAATTTGTTTTTCC 59.030 34.615 7.45 9.48 46.72 3.13
4103 6961 7.148154 GCCCAAAAACTACAATTTGTTTTTCCT 60.148 33.333 7.45 0.00 46.72 3.36
4104 6962 8.735315 CCCAAAAACTACAATTTGTTTTTCCTT 58.265 29.630 7.45 0.00 46.72 3.36
4115 6973 9.064804 CAATTTGTTTTTCCTTTCTTTTCTTGC 57.935 29.630 0.00 0.00 0.00 4.01
4116 6974 7.977789 TTTGTTTTTCCTTTCTTTTCTTGCT 57.022 28.000 0.00 0.00 0.00 3.91
4117 6975 7.977789 TTGTTTTTCCTTTCTTTTCTTGCTT 57.022 28.000 0.00 0.00 0.00 3.91
4118 6976 9.495572 TTTGTTTTTCCTTTCTTTTCTTGCTTA 57.504 25.926 0.00 0.00 0.00 3.09
4119 6977 9.665719 TTGTTTTTCCTTTCTTTTCTTGCTTAT 57.334 25.926 0.00 0.00 0.00 1.73
4234 7092 7.867445 TTTTTCTAAAATCATTGTCCTTCGC 57.133 32.000 0.00 0.00 0.00 4.70
4235 7093 5.560966 TTCTAAAATCATTGTCCTTCGCC 57.439 39.130 0.00 0.00 0.00 5.54
4236 7094 4.584874 TCTAAAATCATTGTCCTTCGCCA 58.415 39.130 0.00 0.00 0.00 5.69
4237 7095 5.007034 TCTAAAATCATTGTCCTTCGCCAA 58.993 37.500 0.00 0.00 0.00 4.52
4238 7096 4.806640 AAAATCATTGTCCTTCGCCAAT 57.193 36.364 0.00 0.00 0.00 3.16
4239 7097 5.913137 AAAATCATTGTCCTTCGCCAATA 57.087 34.783 0.00 0.00 30.41 1.90
4240 7098 6.469782 AAAATCATTGTCCTTCGCCAATAT 57.530 33.333 0.00 0.00 30.41 1.28
4241 7099 7.581213 AAAATCATTGTCCTTCGCCAATATA 57.419 32.000 0.00 0.00 30.41 0.86
4242 7100 7.765695 AAATCATTGTCCTTCGCCAATATAT 57.234 32.000 0.00 0.00 30.41 0.86
4243 7101 8.862325 AAATCATTGTCCTTCGCCAATATATA 57.138 30.769 0.00 0.00 30.41 0.86
4244 7102 8.862325 AATCATTGTCCTTCGCCAATATATAA 57.138 30.769 0.00 0.00 30.41 0.98
4245 7103 7.905604 TCATTGTCCTTCGCCAATATATAAG 57.094 36.000 0.00 0.00 30.41 1.73
4246 7104 6.371548 TCATTGTCCTTCGCCAATATATAAGC 59.628 38.462 0.00 0.00 30.41 3.09
4247 7105 4.575885 TGTCCTTCGCCAATATATAAGCC 58.424 43.478 2.25 0.00 0.00 4.35
4248 7106 4.041075 TGTCCTTCGCCAATATATAAGCCA 59.959 41.667 2.25 0.00 0.00 4.75
4249 7107 5.186198 GTCCTTCGCCAATATATAAGCCAT 58.814 41.667 2.25 0.00 0.00 4.40
4250 7108 5.648092 GTCCTTCGCCAATATATAAGCCATT 59.352 40.000 2.25 0.00 0.00 3.16
4251 7109 5.647658 TCCTTCGCCAATATATAAGCCATTG 59.352 40.000 2.25 0.00 0.00 2.82
4252 7110 5.647658 CCTTCGCCAATATATAAGCCATTGA 59.352 40.000 0.00 0.00 32.54 2.57
4253 7111 6.319658 CCTTCGCCAATATATAAGCCATTGAT 59.680 38.462 0.00 0.00 32.54 2.57
4254 7112 6.682423 TCGCCAATATATAAGCCATTGATG 57.318 37.500 0.00 0.00 32.54 3.07
4255 7113 6.179756 TCGCCAATATATAAGCCATTGATGT 58.820 36.000 0.00 0.00 32.54 3.06
4256 7114 6.658816 TCGCCAATATATAAGCCATTGATGTT 59.341 34.615 0.00 0.00 32.54 2.71
4257 7115 7.826744 TCGCCAATATATAAGCCATTGATGTTA 59.173 33.333 0.00 0.00 32.54 2.41
4258 7116 8.623903 CGCCAATATATAAGCCATTGATGTTAT 58.376 33.333 0.00 0.00 32.54 1.89
4267 7125 7.480760 AAGCCATTGATGTTATTTTACAGGT 57.519 32.000 0.00 0.00 0.00 4.00
4268 7126 6.866480 AGCCATTGATGTTATTTTACAGGTG 58.134 36.000 0.00 0.00 0.00 4.00
4269 7127 6.663093 AGCCATTGATGTTATTTTACAGGTGA 59.337 34.615 0.00 0.00 0.00 4.02
4270 7128 7.342799 AGCCATTGATGTTATTTTACAGGTGAT 59.657 33.333 0.00 0.00 0.00 3.06
4271 7129 8.629158 GCCATTGATGTTATTTTACAGGTGATA 58.371 33.333 0.00 0.00 0.00 2.15
4276 7134 9.733556 TGATGTTATTTTACAGGTGATAGTTGT 57.266 29.630 0.00 0.00 0.00 3.32
4283 7141 6.995511 TTACAGGTGATAGTTGTTTATGCC 57.004 37.500 0.00 0.00 0.00 4.40
4284 7142 5.179452 ACAGGTGATAGTTGTTTATGCCT 57.821 39.130 0.00 0.00 0.00 4.75
4285 7143 5.186198 ACAGGTGATAGTTGTTTATGCCTC 58.814 41.667 0.00 0.00 0.00 4.70
4286 7144 5.045578 ACAGGTGATAGTTGTTTATGCCTCT 60.046 40.000 0.00 0.00 0.00 3.69
4287 7145 5.525378 CAGGTGATAGTTGTTTATGCCTCTC 59.475 44.000 0.00 0.00 0.00 3.20
4288 7146 5.426833 AGGTGATAGTTGTTTATGCCTCTCT 59.573 40.000 0.00 0.00 0.00 3.10
4289 7147 6.611642 AGGTGATAGTTGTTTATGCCTCTCTA 59.388 38.462 0.00 0.00 0.00 2.43
4290 7148 7.291182 AGGTGATAGTTGTTTATGCCTCTCTAT 59.709 37.037 0.00 0.00 0.00 1.98
4291 7149 7.934120 GGTGATAGTTGTTTATGCCTCTCTATT 59.066 37.037 0.00 0.00 0.00 1.73
4292 7150 9.331282 GTGATAGTTGTTTATGCCTCTCTATTT 57.669 33.333 0.00 0.00 0.00 1.40
4293 7151 9.905713 TGATAGTTGTTTATGCCTCTCTATTTT 57.094 29.630 0.00 0.00 0.00 1.82
4296 7154 8.507524 AGTTGTTTATGCCTCTCTATTTTACC 57.492 34.615 0.00 0.00 0.00 2.85
4297 7155 8.107095 AGTTGTTTATGCCTCTCTATTTTACCA 58.893 33.333 0.00 0.00 0.00 3.25
4298 7156 8.903820 GTTGTTTATGCCTCTCTATTTTACCAT 58.096 33.333 0.00 0.00 0.00 3.55
4299 7157 8.450578 TGTTTATGCCTCTCTATTTTACCATG 57.549 34.615 0.00 0.00 0.00 3.66
4300 7158 8.052748 TGTTTATGCCTCTCTATTTTACCATGT 58.947 33.333 0.00 0.00 0.00 3.21
4301 7159 8.560374 GTTTATGCCTCTCTATTTTACCATGTC 58.440 37.037 0.00 0.00 0.00 3.06
4302 7160 4.693283 TGCCTCTCTATTTTACCATGTCG 58.307 43.478 0.00 0.00 0.00 4.35
4303 7161 4.161565 TGCCTCTCTATTTTACCATGTCGT 59.838 41.667 0.00 0.00 0.00 4.34
4304 7162 4.508124 GCCTCTCTATTTTACCATGTCGTG 59.492 45.833 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.526713 AAACAAATTATTTTGAAATTGCCCAAC 57.473 25.926 15.19 0.00 44.11 3.77
125 127 1.203075 ACTGACGGGAGGAGAAAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
189 191 1.528542 CCGAGATCCTCCGCACCTA 60.529 63.158 0.00 0.00 0.00 3.08
233 238 4.323868 CGCTAAACCTAACAAGAACGAGAG 59.676 45.833 0.00 0.00 0.00 3.20
328 338 2.667137 GATACTAGACGCACCATCAGC 58.333 52.381 0.00 0.00 0.00 4.26
351 361 0.843309 ACACCTCCACACACCATTCA 59.157 50.000 0.00 0.00 0.00 2.57
414 424 6.380079 AAGACCAGATCCAAACAGAACTAT 57.620 37.500 0.00 0.00 0.00 2.12
418 428 3.071023 ACGAAGACCAGATCCAAACAGAA 59.929 43.478 0.00 0.00 0.00 3.02
476 486 5.221145 GCTGATGAAGAAAGTCCTAGATCGA 60.221 44.000 0.00 0.00 0.00 3.59
484 494 4.688021 ACTATCGCTGATGAAGAAAGTCC 58.312 43.478 1.97 0.00 0.00 3.85
498 508 1.276421 ACCAGAGCAACAACTATCGCT 59.724 47.619 0.00 0.00 37.44 4.93
531 541 0.392998 ATTGCTGTGCTAAGACCCCG 60.393 55.000 0.00 0.00 0.00 5.73
546 556 7.859325 TTGTAGTAGACAATAGGGAAATTGC 57.141 36.000 0.00 0.00 43.30 3.56
619 853 9.160576 CAACATGCTAATTTCACAAACAAAATG 57.839 29.630 0.00 0.00 0.00 2.32
635 869 1.890876 AGAACCACGCAACATGCTAA 58.109 45.000 0.00 0.00 42.25 3.09
641 875 7.908827 TTATCTATTTAAGAACCACGCAACA 57.091 32.000 0.00 0.00 37.89 3.33
679 913 9.137459 TGTGTTTATCTTCTCCCACAAAATAAA 57.863 29.630 0.00 0.00 30.55 1.40
688 922 8.548025 TCTATGAAATGTGTTTATCTTCTCCCA 58.452 33.333 0.00 0.00 0.00 4.37
778 1017 7.615582 ATGGTTCTAATATGTTGTCAGTGTG 57.384 36.000 0.00 0.00 0.00 3.82
822 1061 4.739716 ACAAATTCGTGTGCTGTGATTTTC 59.260 37.500 0.00 0.00 0.00 2.29
894 1133 4.452455 ACACCAAGCATATAATTAGCGCTC 59.548 41.667 16.34 0.00 31.17 5.03
910 1155 3.942829 TCTTCAAGCCATCTACACCAAG 58.057 45.455 0.00 0.00 0.00 3.61
1032 1277 3.012934 TCTCCACATCTACGACATGGA 57.987 47.619 0.00 0.00 37.11 3.41
1044 1289 7.004086 TCTTACCATTCTTGTTTTCTCCACAT 58.996 34.615 0.00 0.00 0.00 3.21
1045 1290 6.361433 TCTTACCATTCTTGTTTTCTCCACA 58.639 36.000 0.00 0.00 0.00 4.17
1046 1291 6.877611 TCTTACCATTCTTGTTTTCTCCAC 57.122 37.500 0.00 0.00 0.00 4.02
1047 1292 6.831353 TGTTCTTACCATTCTTGTTTTCTCCA 59.169 34.615 0.00 0.00 0.00 3.86
1048 1293 7.272037 TGTTCTTACCATTCTTGTTTTCTCC 57.728 36.000 0.00 0.00 0.00 3.71
1049 1294 9.237846 CTTTGTTCTTACCATTCTTGTTTTCTC 57.762 33.333 0.00 0.00 0.00 2.87
1050 1295 8.966868 TCTTTGTTCTTACCATTCTTGTTTTCT 58.033 29.630 0.00 0.00 0.00 2.52
1052 1297 9.533253 CATCTTTGTTCTTACCATTCTTGTTTT 57.467 29.630 0.00 0.00 0.00 2.43
1084 1329 5.449553 ACCCCTCTTCCACAAATGATATTC 58.550 41.667 0.00 0.00 0.00 1.75
1126 1371 1.724623 CTCACCGTGTTATGTCCAACG 59.275 52.381 0.00 0.00 35.85 4.10
1153 1398 0.319083 TTTGGTATCGTCACTGCCGT 59.681 50.000 0.00 0.00 0.00 5.68
1170 1415 7.444792 GCCATCTCTCTCATTATGAACATCTTT 59.555 37.037 0.00 0.00 0.00 2.52
1196 1441 2.493759 CGGTACATGTGCGTCGTCG 61.494 63.158 9.11 1.67 40.37 5.12
1202 1447 0.722848 GTTTACCCGGTACATGTGCG 59.277 55.000 9.11 3.76 0.00 5.34
1223 1468 9.922305 GTGTCTTCTTAATTTTATTCATCTCCG 57.078 33.333 0.00 0.00 0.00 4.63
1298 1543 2.358322 TGCACCATCTGATCATGCAT 57.642 45.000 15.22 0.00 41.18 3.96
1310 1555 2.158623 TGGACTTTCTGTCTTGCACCAT 60.159 45.455 0.00 0.00 44.74 3.55
1327 1572 7.272037 TCAAACTTTTCTACCTCATTTGGAC 57.728 36.000 0.00 0.00 0.00 4.02
1357 1602 4.289245 AGGGGTTTACAATTCCATGGATG 58.711 43.478 17.06 14.65 0.00 3.51
1362 1607 6.382859 GGATACAAAGGGGTTTACAATTCCAT 59.617 38.462 0.00 0.00 0.00 3.41
1368 1613 4.668636 CCAGGATACAAAGGGGTTTACAA 58.331 43.478 0.00 0.00 41.41 2.41
1369 1614 3.562609 GCCAGGATACAAAGGGGTTTACA 60.563 47.826 0.00 0.00 41.41 2.41
1370 1615 3.021695 GCCAGGATACAAAGGGGTTTAC 58.978 50.000 0.00 0.00 41.41 2.01
1371 1616 2.650322 TGCCAGGATACAAAGGGGTTTA 59.350 45.455 0.00 0.00 41.41 2.01
1372 1617 1.431243 TGCCAGGATACAAAGGGGTTT 59.569 47.619 0.00 0.00 41.41 3.27
1373 1618 1.005924 CTGCCAGGATACAAAGGGGTT 59.994 52.381 0.00 0.00 41.41 4.11
1374 1619 0.625849 CTGCCAGGATACAAAGGGGT 59.374 55.000 0.00 0.00 41.41 4.95
1375 1620 0.753111 GCTGCCAGGATACAAAGGGG 60.753 60.000 0.00 0.00 41.41 4.79
1376 1621 1.097547 CGCTGCCAGGATACAAAGGG 61.098 60.000 0.00 0.00 41.41 3.95
1377 1622 0.107703 TCGCTGCCAGGATACAAAGG 60.108 55.000 0.00 0.00 41.41 3.11
1378 1623 1.667724 CTTCGCTGCCAGGATACAAAG 59.332 52.381 0.00 0.00 41.41 2.77
1379 1624 1.277842 TCTTCGCTGCCAGGATACAAA 59.722 47.619 0.00 0.00 41.41 2.83
1380 1625 0.901827 TCTTCGCTGCCAGGATACAA 59.098 50.000 0.00 0.00 41.41 2.41
1381 1626 0.901827 TTCTTCGCTGCCAGGATACA 59.098 50.000 0.00 0.00 41.41 2.29
1382 1627 2.024176 TTTCTTCGCTGCCAGGATAC 57.976 50.000 0.00 0.00 0.00 2.24
1383 1628 2.632377 CTTTTCTTCGCTGCCAGGATA 58.368 47.619 0.00 0.00 0.00 2.59
1459 1705 1.646189 GACGCTTTTGTTTGGCCAAA 58.354 45.000 27.13 27.13 32.70 3.28
1461 1707 1.064946 CGACGCTTTTGTTTGGCCA 59.935 52.632 0.00 0.00 0.00 5.36
1466 1712 3.105203 CAATGTGTCGACGCTTTTGTTT 58.895 40.909 27.76 10.40 0.00 2.83
1475 1721 7.045612 GCAAGATATTTTAACAATGTGTCGACG 60.046 37.037 11.62 0.00 0.00 5.12
1492 1738 3.582208 TGGCCAAACCTTTGCAAGATATT 59.418 39.130 0.61 0.00 40.22 1.28
1669 1944 2.262637 CTATATGGACCGGGCCCTTAA 58.737 52.381 27.91 4.73 0.00 1.85
1676 1951 1.983224 CCCAGCTATATGGACCGGG 59.017 63.158 6.32 0.00 43.57 5.73
1681 1956 0.842030 CCCAGGCCCAGCTATATGGA 60.842 60.000 0.00 0.00 43.57 3.41
1708 1983 4.130118 CTGAGGGTAATTTTCGAGGGATG 58.870 47.826 0.00 0.00 0.00 3.51
1716 1991 4.825085 TGTGACCAACTGAGGGTAATTTTC 59.175 41.667 0.00 0.00 39.19 2.29
1818 2093 4.722700 CTCCTGTTGCACCCCGGG 62.723 72.222 15.80 15.80 0.00 5.73
1819 2094 3.953775 ACTCCTGTTGCACCCCGG 61.954 66.667 0.00 0.00 0.00 5.73
1820 2095 2.669569 CACTCCTGTTGCACCCCG 60.670 66.667 0.00 0.00 0.00 5.73
1821 2096 2.282462 CCACTCCTGTTGCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
1822 2097 2.985847 GCCACTCCTGTTGCACCC 60.986 66.667 0.00 0.00 35.25 4.61
1823 2098 2.203337 TGCCACTCCTGTTGCACC 60.203 61.111 0.00 0.00 39.47 5.01
1824 2099 2.912624 GCTGCCACTCCTGTTGCAC 61.913 63.158 0.00 0.00 39.47 4.57
1825 2100 2.595463 GCTGCCACTCCTGTTGCA 60.595 61.111 0.00 0.00 41.62 4.08
1950 2244 2.122954 GGGACAGAGACACCCCCT 59.877 66.667 0.00 0.00 37.85 4.79
1983 2288 3.860605 AGCTGGTGTGCGTGACCA 61.861 61.111 0.00 0.00 41.37 4.02
1986 2294 1.887242 GAACAGCTGGTGTGCGTGA 60.887 57.895 19.93 0.00 40.26 4.35
2027 2335 2.106418 GACGGCAAGACAACGTTTTTC 58.894 47.619 0.00 0.00 41.40 2.29
2033 2341 1.148310 AGAATGACGGCAAGACAACG 58.852 50.000 0.00 0.00 0.00 4.10
2039 2347 1.536766 TCAGCAAAGAATGACGGCAAG 59.463 47.619 0.00 0.00 0.00 4.01
2040 2348 1.603456 TCAGCAAAGAATGACGGCAA 58.397 45.000 0.00 0.00 0.00 4.52
2079 4850 3.616956 TGTTCTCTGCTTCCATCGATT 57.383 42.857 0.00 0.00 0.00 3.34
2081 4852 2.562738 TCTTGTTCTCTGCTTCCATCGA 59.437 45.455 0.00 0.00 0.00 3.59
2125 4896 3.005539 AGCGGCAGGTCTGACCAT 61.006 61.111 27.48 10.84 41.95 3.55
2279 5055 0.324943 ATGCTGTAGAAGGTGCGGTT 59.675 50.000 0.00 0.00 0.00 4.44
2282 5058 0.811616 GGGATGCTGTAGAAGGTGCG 60.812 60.000 0.00 0.00 0.00 5.34
2312 5089 2.751837 CCCTGGAAAGCGGAAGGC 60.752 66.667 0.00 0.00 44.05 4.35
2522 5302 7.825761 TGACTTATTGATATGCATCCATGTAGG 59.174 37.037 0.19 3.19 39.47 3.18
2615 5395 7.106439 AGATTAGGATCTGACTAGTGTGTTG 57.894 40.000 0.00 0.00 41.09 3.33
2849 5647 3.242518 CGTTCTCTTCAGACGCAACATA 58.757 45.455 0.00 0.00 0.00 2.29
2856 5654 1.192534 GCAAACCGTTCTCTTCAGACG 59.807 52.381 0.00 0.00 0.00 4.18
2945 5752 5.347124 TCCAGGTCTAATTTCAGGAACCTA 58.653 41.667 0.00 0.00 0.00 3.08
2982 5789 2.350522 ACTCGCTTTGTCCAGCAATAG 58.649 47.619 0.00 0.00 40.09 1.73
3022 5829 0.320334 TCCATCGCGAGTGCTCAAAA 60.320 50.000 16.66 0.00 39.65 2.44
3065 5872 0.468029 CCCAGAAACAGCACCTGGTT 60.468 55.000 0.00 0.00 44.76 3.67
3203 6010 2.287427 GCATGTCATAGGCACTGCATTC 60.287 50.000 2.82 0.00 41.52 2.67
3204 6011 1.679680 GCATGTCATAGGCACTGCATT 59.320 47.619 2.82 0.00 41.52 3.56
3355 6168 5.186797 GTCAGATAGCATGGGAGTAGCTTAT 59.813 44.000 0.00 0.00 39.68 1.73
3356 6169 4.524714 GTCAGATAGCATGGGAGTAGCTTA 59.475 45.833 0.00 0.00 39.68 3.09
3371 6185 5.321959 ACATCTATCGCATGGTCAGATAG 57.678 43.478 0.00 5.60 42.98 2.08
3385 6199 5.689068 GCAGCCAGCAAAATAAACATCTATC 59.311 40.000 0.00 0.00 44.79 2.08
3403 6217 1.614051 CCATTAACCTGTGAGCAGCCA 60.614 52.381 0.00 0.00 41.26 4.75
3404 6218 1.098050 CCATTAACCTGTGAGCAGCC 58.902 55.000 0.00 0.00 41.26 4.85
3422 6236 0.611714 AGACCACCGAACACCATACC 59.388 55.000 0.00 0.00 0.00 2.73
3423 6237 1.274167 TGAGACCACCGAACACCATAC 59.726 52.381 0.00 0.00 0.00 2.39
3451 6294 6.370442 AGCAAGTTATACTAACGCATTTCACA 59.630 34.615 0.00 0.00 0.00 3.58
3464 6307 6.579865 ACTAACGGCATAAGCAAGTTATACT 58.420 36.000 9.55 0.00 44.61 2.12
3495 6345 6.743575 AGTTCAGGCAATTTACTGATACAC 57.256 37.500 9.07 5.81 42.73 2.90
3519 6370 7.834181 ACAGCTTCCATAGTAAACACCATATTT 59.166 33.333 0.00 0.00 0.00 1.40
3529 6380 5.012664 TGGAGTCAACAGCTTCCATAGTAAA 59.987 40.000 0.00 0.00 0.00 2.01
3547 6398 6.861065 TTGTACTTGAAAACTGATGGAGTC 57.139 37.500 0.00 0.00 31.73 3.36
3551 6402 6.642131 CCACAATTGTACTTGAAAACTGATGG 59.358 38.462 11.53 0.00 0.00 3.51
3565 6416 6.128035 TGACATAGCAATGACCACAATTGTAC 60.128 38.462 11.53 6.70 36.54 2.90
3568 6419 5.106038 ACTGACATAGCAATGACCACAATTG 60.106 40.000 3.24 3.24 36.54 2.32
3569 6420 5.012239 ACTGACATAGCAATGACCACAATT 58.988 37.500 0.00 0.00 36.54 2.32
3571 6422 4.019792 ACTGACATAGCAATGACCACAA 57.980 40.909 0.00 0.00 36.54 3.33
3638 6489 9.850628 CAAAATTATCGCAAAGGATGATATCAT 57.149 29.630 18.21 18.21 39.70 2.45
3643 6494 5.750067 GTGCAAAATTATCGCAAAGGATGAT 59.250 36.000 0.00 0.00 37.41 2.45
3644 6495 5.101628 GTGCAAAATTATCGCAAAGGATGA 58.898 37.500 0.00 0.00 37.41 2.92
3645 6496 5.104374 AGTGCAAAATTATCGCAAAGGATG 58.896 37.500 0.00 0.00 37.41 3.51
3646 6497 5.126061 AGAGTGCAAAATTATCGCAAAGGAT 59.874 36.000 0.00 0.00 37.41 3.24
3649 6500 5.393124 TCAGAGTGCAAAATTATCGCAAAG 58.607 37.500 0.00 0.00 37.41 2.77
3674 6531 1.539388 CCACGCAAGCAAATCTACCAA 59.461 47.619 0.00 0.00 45.62 3.67
3679 6536 1.269726 CCAAACCACGCAAGCAAATCT 60.270 47.619 0.00 0.00 45.62 2.40
3690 6547 2.817258 TCTCCAAATTAGCCAAACCACG 59.183 45.455 0.00 0.00 0.00 4.94
3699 6556 5.448360 GCAGTGACTGAATCTCCAAATTAGC 60.448 44.000 18.18 0.00 32.44 3.09
3745 6603 1.795768 CTGAGAAAGTAACTGCGGCA 58.204 50.000 1.29 1.29 0.00 5.69
3756 6614 0.322906 GGTGAAGGGGGCTGAGAAAG 60.323 60.000 0.00 0.00 0.00 2.62
3763 6621 4.974438 TGACCGGTGAAGGGGGCT 62.974 66.667 14.63 0.00 35.02 5.19
3764 6622 3.501040 TTTGACCGGTGAAGGGGGC 62.501 63.158 14.63 0.00 35.02 5.80
3765 6623 1.303317 CTTTGACCGGTGAAGGGGG 60.303 63.158 14.63 0.00 35.02 5.40
3766 6624 1.303317 CCTTTGACCGGTGAAGGGG 60.303 63.158 24.56 17.76 37.00 4.79
3775 6633 3.126171 TCAATTTATGTCGCCTTTGACCG 59.874 43.478 0.00 0.00 38.11 4.79
3777 6635 7.581011 AATTTCAATTTATGTCGCCTTTGAC 57.419 32.000 0.00 0.00 39.37 3.18
3802 6660 1.138859 TGGCAGCTTATCACGCATAGT 59.861 47.619 0.00 0.00 0.00 2.12
3809 6667 0.466922 ATGGCCTGGCAGCTTATCAC 60.467 55.000 22.05 0.00 0.00 3.06
3876 6734 6.258727 AGGCTCATCACGATTATACACAAAAG 59.741 38.462 0.00 0.00 0.00 2.27
3878 6736 5.670485 AGGCTCATCACGATTATACACAAA 58.330 37.500 0.00 0.00 0.00 2.83
3881 6739 6.868864 ACATAAGGCTCATCACGATTATACAC 59.131 38.462 0.00 0.00 0.00 2.90
3887 6745 4.039730 AGCTACATAAGGCTCATCACGATT 59.960 41.667 0.00 0.00 32.98 3.34
3888 6746 3.576118 AGCTACATAAGGCTCATCACGAT 59.424 43.478 0.00 0.00 32.98 3.73
3889 6747 2.959030 AGCTACATAAGGCTCATCACGA 59.041 45.455 0.00 0.00 32.98 4.35
3890 6748 3.055591 CAGCTACATAAGGCTCATCACG 58.944 50.000 0.00 0.00 36.59 4.35
3891 6749 3.806521 CACAGCTACATAAGGCTCATCAC 59.193 47.826 0.00 0.00 36.59 3.06
3892 6750 3.742327 GCACAGCTACATAAGGCTCATCA 60.742 47.826 0.00 0.00 36.59 3.07
3893 6751 2.805099 GCACAGCTACATAAGGCTCATC 59.195 50.000 0.00 0.00 36.59 2.92
3894 6752 2.437281 AGCACAGCTACATAAGGCTCAT 59.563 45.455 0.00 0.00 36.99 2.90
3895 6753 1.833630 AGCACAGCTACATAAGGCTCA 59.166 47.619 0.00 0.00 36.99 4.26
3896 6754 2.611225 AGCACAGCTACATAAGGCTC 57.389 50.000 0.00 0.00 36.99 4.70
3897 6755 2.237143 TCAAGCACAGCTACATAAGGCT 59.763 45.455 0.00 0.00 38.25 4.58
3898 6756 2.352960 GTCAAGCACAGCTACATAAGGC 59.647 50.000 0.00 0.00 38.25 4.35
3899 6757 2.939103 GGTCAAGCACAGCTACATAAGG 59.061 50.000 0.00 0.00 38.25 2.69
3900 6758 3.599343 TGGTCAAGCACAGCTACATAAG 58.401 45.455 0.00 0.00 38.25 1.73
3901 6759 3.694043 TGGTCAAGCACAGCTACATAA 57.306 42.857 0.00 0.00 38.25 1.90
3902 6760 3.599343 CTTGGTCAAGCACAGCTACATA 58.401 45.455 0.00 0.00 38.25 2.29
3903 6761 2.430465 CTTGGTCAAGCACAGCTACAT 58.570 47.619 0.00 0.00 38.25 2.29
3904 6762 1.882912 CTTGGTCAAGCACAGCTACA 58.117 50.000 0.00 0.00 38.25 2.74
3914 6772 5.049954 CCAAAAACATTCATGCTTGGTCAAG 60.050 40.000 6.36 6.36 41.24 3.02
3915 6773 4.815308 CCAAAAACATTCATGCTTGGTCAA 59.185 37.500 0.00 0.00 33.80 3.18
3916 6774 4.100653 TCCAAAAACATTCATGCTTGGTCA 59.899 37.500 12.35 0.00 36.98 4.02
3917 6775 4.630111 TCCAAAAACATTCATGCTTGGTC 58.370 39.130 12.35 0.00 36.98 4.02
3918 6776 4.686191 TCCAAAAACATTCATGCTTGGT 57.314 36.364 12.35 0.00 36.98 3.67
3919 6777 5.239351 TCATCCAAAAACATTCATGCTTGG 58.761 37.500 0.00 8.59 36.99 3.61
3920 6778 5.929992 ACTCATCCAAAAACATTCATGCTTG 59.070 36.000 0.00 0.00 0.00 4.01
3921 6779 5.929992 CACTCATCCAAAAACATTCATGCTT 59.070 36.000 0.00 0.00 0.00 3.91
3922 6780 5.475719 CACTCATCCAAAAACATTCATGCT 58.524 37.500 0.00 0.00 0.00 3.79
3923 6781 4.092383 GCACTCATCCAAAAACATTCATGC 59.908 41.667 0.00 0.00 0.00 4.06
3924 6782 5.231702 TGCACTCATCCAAAAACATTCATG 58.768 37.500 0.00 0.00 0.00 3.07
3925 6783 5.011329 ACTGCACTCATCCAAAAACATTCAT 59.989 36.000 0.00 0.00 0.00 2.57
3926 6784 4.341806 ACTGCACTCATCCAAAAACATTCA 59.658 37.500 0.00 0.00 0.00 2.57
3927 6785 4.874970 ACTGCACTCATCCAAAAACATTC 58.125 39.130 0.00 0.00 0.00 2.67
3928 6786 4.942761 ACTGCACTCATCCAAAAACATT 57.057 36.364 0.00 0.00 0.00 2.71
3929 6787 4.942761 AACTGCACTCATCCAAAAACAT 57.057 36.364 0.00 0.00 0.00 2.71
3930 6788 4.081752 ACAAACTGCACTCATCCAAAAACA 60.082 37.500 0.00 0.00 0.00 2.83
3931 6789 4.432712 ACAAACTGCACTCATCCAAAAAC 58.567 39.130 0.00 0.00 0.00 2.43
3932 6790 4.734398 ACAAACTGCACTCATCCAAAAA 57.266 36.364 0.00 0.00 0.00 1.94
3933 6791 4.734398 AACAAACTGCACTCATCCAAAA 57.266 36.364 0.00 0.00 0.00 2.44
3934 6792 5.843673 TTAACAAACTGCACTCATCCAAA 57.156 34.783 0.00 0.00 0.00 3.28
3935 6793 5.843673 TTTAACAAACTGCACTCATCCAA 57.156 34.783 0.00 0.00 0.00 3.53
3936 6794 5.221224 CCTTTTAACAAACTGCACTCATCCA 60.221 40.000 0.00 0.00 0.00 3.41
3937 6795 5.222631 CCTTTTAACAAACTGCACTCATCC 58.777 41.667 0.00 0.00 0.00 3.51
3938 6796 5.009610 TCCCTTTTAACAAACTGCACTCATC 59.990 40.000 0.00 0.00 0.00 2.92
3939 6797 4.892934 TCCCTTTTAACAAACTGCACTCAT 59.107 37.500 0.00 0.00 0.00 2.90
3940 6798 4.274147 TCCCTTTTAACAAACTGCACTCA 58.726 39.130 0.00 0.00 0.00 3.41
3941 6799 4.911514 TCCCTTTTAACAAACTGCACTC 57.088 40.909 0.00 0.00 0.00 3.51
3942 6800 4.892934 TGATCCCTTTTAACAAACTGCACT 59.107 37.500 0.00 0.00 0.00 4.40
3943 6801 5.195001 TGATCCCTTTTAACAAACTGCAC 57.805 39.130 0.00 0.00 0.00 4.57
3944 6802 7.395772 TCATATGATCCCTTTTAACAAACTGCA 59.604 33.333 0.00 0.00 0.00 4.41
3945 6803 7.771183 TCATATGATCCCTTTTAACAAACTGC 58.229 34.615 0.00 0.00 0.00 4.40
3948 6806 9.533253 CCATTCATATGATCCCTTTTAACAAAC 57.467 33.333 6.17 0.00 33.37 2.93
3949 6807 8.703743 CCCATTCATATGATCCCTTTTAACAAA 58.296 33.333 6.17 0.00 33.37 2.83
3950 6808 8.064389 TCCCATTCATATGATCCCTTTTAACAA 58.936 33.333 6.17 0.00 33.37 2.83
3951 6809 7.590907 TCCCATTCATATGATCCCTTTTAACA 58.409 34.615 6.17 0.00 33.37 2.41
3952 6810 7.309438 GCTCCCATTCATATGATCCCTTTTAAC 60.309 40.741 6.17 0.00 33.37 2.01
3953 6811 6.721208 GCTCCCATTCATATGATCCCTTTTAA 59.279 38.462 6.17 0.00 33.37 1.52
3954 6812 6.183361 TGCTCCCATTCATATGATCCCTTTTA 60.183 38.462 6.17 0.00 33.37 1.52
3955 6813 5.082425 GCTCCCATTCATATGATCCCTTTT 58.918 41.667 6.17 0.00 33.37 2.27
3956 6814 4.106825 TGCTCCCATTCATATGATCCCTTT 59.893 41.667 6.17 0.00 33.37 3.11
3957 6815 3.659195 TGCTCCCATTCATATGATCCCTT 59.341 43.478 6.17 0.00 33.37 3.95
3958 6816 3.009916 GTGCTCCCATTCATATGATCCCT 59.990 47.826 6.17 0.00 33.37 4.20
3959 6817 3.009916 AGTGCTCCCATTCATATGATCCC 59.990 47.826 6.17 0.00 33.37 3.85
3960 6818 4.008330 CAGTGCTCCCATTCATATGATCC 58.992 47.826 6.17 0.00 33.37 3.36
3961 6819 4.649692 ACAGTGCTCCCATTCATATGATC 58.350 43.478 6.17 0.00 33.37 2.92
3962 6820 4.719026 ACAGTGCTCCCATTCATATGAT 57.281 40.909 6.17 0.00 33.37 2.45
3963 6821 4.508551 AACAGTGCTCCCATTCATATGA 57.491 40.909 0.00 0.00 33.37 2.15
3964 6822 5.824624 AGTTAACAGTGCTCCCATTCATATG 59.175 40.000 8.61 0.00 0.00 1.78
3965 6823 6.006275 AGTTAACAGTGCTCCCATTCATAT 57.994 37.500 8.61 0.00 0.00 1.78
3966 6824 5.435686 AGTTAACAGTGCTCCCATTCATA 57.564 39.130 8.61 0.00 0.00 2.15
3967 6825 4.307032 AGTTAACAGTGCTCCCATTCAT 57.693 40.909 8.61 0.00 0.00 2.57
3968 6826 3.788227 AGTTAACAGTGCTCCCATTCA 57.212 42.857 8.61 0.00 0.00 2.57
3969 6827 4.833390 AGTAGTTAACAGTGCTCCCATTC 58.167 43.478 8.61 0.00 0.00 2.67
3970 6828 4.323562 GGAGTAGTTAACAGTGCTCCCATT 60.324 45.833 16.52 0.00 45.35 3.16
3971 6829 3.197983 GGAGTAGTTAACAGTGCTCCCAT 59.802 47.826 16.52 0.00 45.35 4.00
3972 6830 2.565834 GGAGTAGTTAACAGTGCTCCCA 59.434 50.000 16.52 0.00 45.35 4.37
3973 6831 3.248495 GGAGTAGTTAACAGTGCTCCC 57.752 52.381 16.52 4.26 45.35 4.30
3975 6833 3.119065 GGAGGGAGTAGTTAACAGTGCTC 60.119 52.174 8.61 6.41 34.99 4.26
3976 6834 2.832733 GGAGGGAGTAGTTAACAGTGCT 59.167 50.000 8.61 0.00 0.00 4.40
3977 6835 2.416972 CGGAGGGAGTAGTTAACAGTGC 60.417 54.545 8.61 2.55 0.00 4.40
3978 6836 3.087031 TCGGAGGGAGTAGTTAACAGTG 58.913 50.000 8.61 0.00 0.00 3.66
3979 6837 3.087781 GTCGGAGGGAGTAGTTAACAGT 58.912 50.000 8.61 0.00 0.00 3.55
3980 6838 3.128938 CAGTCGGAGGGAGTAGTTAACAG 59.871 52.174 8.61 0.00 0.00 3.16
3981 6839 3.087031 CAGTCGGAGGGAGTAGTTAACA 58.913 50.000 8.61 0.00 0.00 2.41
3982 6840 2.426381 CCAGTCGGAGGGAGTAGTTAAC 59.574 54.545 0.00 0.00 0.00 2.01
3983 6841 2.042162 ACCAGTCGGAGGGAGTAGTTAA 59.958 50.000 2.85 0.00 35.59 2.01
3984 6842 1.637553 ACCAGTCGGAGGGAGTAGTTA 59.362 52.381 2.85 0.00 35.59 2.24
3985 6843 0.408700 ACCAGTCGGAGGGAGTAGTT 59.591 55.000 2.85 0.00 35.59 2.24
3986 6844 0.034283 GACCAGTCGGAGGGAGTAGT 60.034 60.000 2.85 0.00 35.59 2.73
3987 6845 0.256464 AGACCAGTCGGAGGGAGTAG 59.744 60.000 2.85 0.00 35.59 2.57
3988 6846 0.702902 AAGACCAGTCGGAGGGAGTA 59.297 55.000 2.85 0.00 35.59 2.59
3989 6847 0.702902 TAAGACCAGTCGGAGGGAGT 59.297 55.000 2.85 0.00 35.59 3.85
3990 6848 1.848652 TTAAGACCAGTCGGAGGGAG 58.151 55.000 2.85 0.00 35.59 4.30
3991 6849 2.314071 TTTAAGACCAGTCGGAGGGA 57.686 50.000 2.85 0.00 35.59 4.20
3992 6850 3.412237 TTTTTAAGACCAGTCGGAGGG 57.588 47.619 0.00 0.00 35.59 4.30
4010 6868 9.886132 ACTTCATCCTATAATGTAAGACGTTTT 57.114 29.630 0.00 0.00 0.00 2.43
4043 6901 4.850680 AGGAGGGCACGTATGAATAAAAA 58.149 39.130 0.00 0.00 0.00 1.94
4044 6902 4.497291 AGGAGGGCACGTATGAATAAAA 57.503 40.909 0.00 0.00 0.00 1.52
4045 6903 4.497291 AAGGAGGGCACGTATGAATAAA 57.503 40.909 0.00 0.00 0.00 1.40
4046 6904 4.497291 AAAGGAGGGCACGTATGAATAA 57.503 40.909 0.00 0.00 0.00 1.40
4047 6905 4.196193 CAAAAGGAGGGCACGTATGAATA 58.804 43.478 0.00 0.00 0.00 1.75
4048 6906 3.016736 CAAAAGGAGGGCACGTATGAAT 58.983 45.455 0.00 0.00 0.00 2.57
4049 6907 2.432444 CAAAAGGAGGGCACGTATGAA 58.568 47.619 0.00 0.00 0.00 2.57
4050 6908 1.948611 GCAAAAGGAGGGCACGTATGA 60.949 52.381 0.00 0.00 0.00 2.15
4051 6909 0.451783 GCAAAAGGAGGGCACGTATG 59.548 55.000 0.00 0.00 0.00 2.39
4052 6910 0.328258 AGCAAAAGGAGGGCACGTAT 59.672 50.000 0.00 0.00 0.00 3.06
4053 6911 0.109723 AAGCAAAAGGAGGGCACGTA 59.890 50.000 0.00 0.00 0.00 3.57
4054 6912 1.152756 AAGCAAAAGGAGGGCACGT 60.153 52.632 0.00 0.00 0.00 4.49
4055 6913 1.286880 CAAGCAAAAGGAGGGCACG 59.713 57.895 0.00 0.00 0.00 5.34
4056 6914 1.115326 ACCAAGCAAAAGGAGGGCAC 61.115 55.000 0.00 0.00 0.00 5.01
4057 6915 0.827507 GACCAAGCAAAAGGAGGGCA 60.828 55.000 0.00 0.00 0.00 5.36
4058 6916 1.866853 CGACCAAGCAAAAGGAGGGC 61.867 60.000 0.00 0.00 0.00 5.19
4059 6917 1.866853 GCGACCAAGCAAAAGGAGGG 61.867 60.000 0.00 0.00 37.05 4.30
4060 6918 1.581447 GCGACCAAGCAAAAGGAGG 59.419 57.895 0.00 0.00 37.05 4.30
4061 6919 1.581447 GGCGACCAAGCAAAAGGAG 59.419 57.895 0.00 0.00 39.27 3.69
4062 6920 3.758172 GGCGACCAAGCAAAAGGA 58.242 55.556 0.00 0.00 39.27 3.36
4072 6930 9.882743 AAACAAATTGTAGTTTTTGGGCGACCA 62.883 37.037 5.41 5.41 46.51 4.02
4073 6931 7.615394 AAACAAATTGTAGTTTTTGGGCGACC 61.615 38.462 0.00 0.00 42.40 4.79
4074 6932 4.364860 ACAAATTGTAGTTTTTGGGCGAC 58.635 39.130 0.00 0.00 37.19 5.19
4075 6933 4.657436 ACAAATTGTAGTTTTTGGGCGA 57.343 36.364 0.00 0.00 37.19 5.54
4076 6934 5.726729 AAACAAATTGTAGTTTTTGGGCG 57.273 34.783 0.00 0.00 37.19 6.13
4089 6947 9.064804 GCAAGAAAAGAAAGGAAAAACAAATTG 57.935 29.630 0.00 0.00 0.00 2.32
4090 6948 9.013229 AGCAAGAAAAGAAAGGAAAAACAAATT 57.987 25.926 0.00 0.00 0.00 1.82
4091 6949 8.565896 AGCAAGAAAAGAAAGGAAAAACAAAT 57.434 26.923 0.00 0.00 0.00 2.32
4092 6950 7.977789 AGCAAGAAAAGAAAGGAAAAACAAA 57.022 28.000 0.00 0.00 0.00 2.83
4093 6951 7.977789 AAGCAAGAAAAGAAAGGAAAAACAA 57.022 28.000 0.00 0.00 0.00 2.83
4210 7068 6.866248 GGCGAAGGACAATGATTTTAGAAAAA 59.134 34.615 0.00 0.00 0.00 1.94
4211 7069 6.015856 TGGCGAAGGACAATGATTTTAGAAAA 60.016 34.615 0.00 0.00 0.00 2.29
4212 7070 5.475220 TGGCGAAGGACAATGATTTTAGAAA 59.525 36.000 0.00 0.00 0.00 2.52
4213 7071 5.007034 TGGCGAAGGACAATGATTTTAGAA 58.993 37.500 0.00 0.00 0.00 2.10
4214 7072 4.584874 TGGCGAAGGACAATGATTTTAGA 58.415 39.130 0.00 0.00 0.00 2.10
4215 7073 4.963276 TGGCGAAGGACAATGATTTTAG 57.037 40.909 0.00 0.00 0.00 1.85
4225 7083 4.041075 TGGCTTATATATTGGCGAAGGACA 59.959 41.667 0.00 0.00 0.00 4.02
4226 7084 4.575885 TGGCTTATATATTGGCGAAGGAC 58.424 43.478 0.00 0.00 0.00 3.85
4227 7085 4.901197 TGGCTTATATATTGGCGAAGGA 57.099 40.909 0.00 0.00 0.00 3.36
4228 7086 5.647658 TCAATGGCTTATATATTGGCGAAGG 59.352 40.000 0.00 0.00 33.70 3.46
4229 7087 6.741992 TCAATGGCTTATATATTGGCGAAG 57.258 37.500 0.00 0.00 33.70 3.79
4230 7088 6.658816 ACATCAATGGCTTATATATTGGCGAA 59.341 34.615 0.00 0.00 33.70 4.70
4231 7089 6.179756 ACATCAATGGCTTATATATTGGCGA 58.820 36.000 0.00 0.00 33.70 5.54
4232 7090 6.441093 ACATCAATGGCTTATATATTGGCG 57.559 37.500 0.00 0.00 33.70 5.69
4241 7099 9.200817 ACCTGTAAAATAACATCAATGGCTTAT 57.799 29.630 0.00 0.00 0.00 1.73
4242 7100 8.465999 CACCTGTAAAATAACATCAATGGCTTA 58.534 33.333 0.00 0.00 0.00 3.09
4243 7101 7.178274 TCACCTGTAAAATAACATCAATGGCTT 59.822 33.333 0.00 0.00 0.00 4.35
4244 7102 6.663093 TCACCTGTAAAATAACATCAATGGCT 59.337 34.615 0.00 0.00 0.00 4.75
4245 7103 6.862209 TCACCTGTAAAATAACATCAATGGC 58.138 36.000 0.00 0.00 0.00 4.40
4250 7108 9.733556 ACAACTATCACCTGTAAAATAACATCA 57.266 29.630 0.00 0.00 0.00 3.07
4257 7115 8.466798 GGCATAAACAACTATCACCTGTAAAAT 58.533 33.333 0.00 0.00 0.00 1.82
4258 7116 7.668052 AGGCATAAACAACTATCACCTGTAAAA 59.332 33.333 0.00 0.00 0.00 1.52
4259 7117 7.172342 AGGCATAAACAACTATCACCTGTAAA 58.828 34.615 0.00 0.00 0.00 2.01
4260 7118 6.717289 AGGCATAAACAACTATCACCTGTAA 58.283 36.000 0.00 0.00 0.00 2.41
4261 7119 6.156256 AGAGGCATAAACAACTATCACCTGTA 59.844 38.462 0.00 0.00 0.00 2.74
4262 7120 5.045578 AGAGGCATAAACAACTATCACCTGT 60.046 40.000 0.00 0.00 0.00 4.00
4263 7121 5.431765 AGAGGCATAAACAACTATCACCTG 58.568 41.667 0.00 0.00 0.00 4.00
4264 7122 5.426833 AGAGAGGCATAAACAACTATCACCT 59.573 40.000 0.00 0.00 0.00 4.00
4265 7123 5.675538 AGAGAGGCATAAACAACTATCACC 58.324 41.667 0.00 0.00 0.00 4.02
4266 7124 8.894768 AATAGAGAGGCATAAACAACTATCAC 57.105 34.615 0.00 0.00 0.00 3.06
4267 7125 9.905713 AAAATAGAGAGGCATAAACAACTATCA 57.094 29.630 0.00 0.00 0.00 2.15
4270 7128 9.609346 GGTAAAATAGAGAGGCATAAACAACTA 57.391 33.333 0.00 0.00 0.00 2.24
4271 7129 8.107095 TGGTAAAATAGAGAGGCATAAACAACT 58.893 33.333 0.00 0.00 0.00 3.16
4272 7130 8.276252 TGGTAAAATAGAGAGGCATAAACAAC 57.724 34.615 0.00 0.00 0.00 3.32
4273 7131 8.902806 CATGGTAAAATAGAGAGGCATAAACAA 58.097 33.333 0.00 0.00 0.00 2.83
4274 7132 8.052748 ACATGGTAAAATAGAGAGGCATAAACA 58.947 33.333 0.00 0.00 0.00 2.83
4275 7133 8.451908 ACATGGTAAAATAGAGAGGCATAAAC 57.548 34.615 0.00 0.00 0.00 2.01
4276 7134 7.441157 CGACATGGTAAAATAGAGAGGCATAAA 59.559 37.037 0.00 0.00 0.00 1.40
4277 7135 6.929049 CGACATGGTAAAATAGAGAGGCATAA 59.071 38.462 0.00 0.00 0.00 1.90
4278 7136 6.041637 ACGACATGGTAAAATAGAGAGGCATA 59.958 38.462 0.00 0.00 0.00 3.14
4279 7137 5.163301 ACGACATGGTAAAATAGAGAGGCAT 60.163 40.000 0.00 0.00 0.00 4.40
4280 7138 4.161565 ACGACATGGTAAAATAGAGAGGCA 59.838 41.667 0.00 0.00 0.00 4.75
4281 7139 4.508124 CACGACATGGTAAAATAGAGAGGC 59.492 45.833 0.00 0.00 0.00 4.70
4282 7140 5.050490 CCACGACATGGTAAAATAGAGAGG 58.950 45.833 0.00 0.00 44.46 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.