Multiple sequence alignment - TraesCS1A01G398800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G398800 chr1A 100.000 3366 0 0 1 3366 563757221 563760586 0.000000e+00 6216.0
1 TraesCS1A01G398800 chr1B 86.561 1637 108 44 1080 2688 652479365 652480917 0.000000e+00 1701.0
2 TraesCS1A01G398800 chr1B 82.508 606 54 21 1 556 473223349 473223952 5.050000e-133 484.0
3 TraesCS1A01G398800 chr1B 88.725 204 15 6 2687 2883 652481078 652481280 3.360000e-60 243.0
4 TraesCS1A01G398800 chr1B 82.403 233 19 4 2897 3108 39181022 39181253 2.060000e-42 183.0
5 TraesCS1A01G398800 chr1B 80.347 173 19 8 652 813 473224031 473224199 2.120000e-22 117.0
6 TraesCS1A01G398800 chr1D 88.244 1378 63 34 857 2191 470089629 470090950 0.000000e+00 1555.0
7 TraesCS1A01G398800 chr1D 89.353 1005 58 20 2282 3256 470090948 470091933 0.000000e+00 1218.0
8 TraesCS1A01G398800 chr6B 97.722 834 6 4 1 826 502723516 502724344 0.000000e+00 1423.0
9 TraesCS1A01G398800 chr6B 95.995 824 4 6 1 813 705834832 705834027 0.000000e+00 1312.0
10 TraesCS1A01G398800 chr6B 87.109 543 30 14 2591 3108 112936296 112935769 2.250000e-161 579.0
11 TraesCS1A01G398800 chr6B 82.328 232 21 2 2897 3108 692624709 692624478 2.060000e-42 183.0
12 TraesCS1A01G398800 chr7B 86.422 626 61 16 221 825 735924810 735925432 0.000000e+00 664.0
13 TraesCS1A01G398800 chr7B 86.556 543 32 16 2591 3108 11767109 11766583 8.160000e-156 560.0
14 TraesCS1A01G398800 chr7B 94.643 224 11 1 1 224 735924560 735924782 2.490000e-91 346.0
15 TraesCS1A01G398800 chr7B 82.240 366 35 19 1 338 715810874 715810511 4.250000e-74 289.0
16 TraesCS1A01G398800 chr7B 81.107 307 28 12 258 554 715810551 715810265 5.650000e-53 219.0
17 TraesCS1A01G398800 chr7B 95.506 89 4 0 548 636 639796192 639796280 3.500000e-30 143.0
18 TraesCS1A01G398800 chr5B 86.623 613 58 15 221 811 452825014 452825624 0.000000e+00 656.0
19 TraesCS1A01G398800 chr5B 95.536 224 9 1 1 224 452824764 452824986 1.150000e-94 357.0
20 TraesCS1A01G398800 chr5B 89.381 226 14 5 1 223 669636325 669636543 3.310000e-70 276.0
21 TraesCS1A01G398800 chr5B 82.201 309 25 12 258 556 669636649 669636937 4.340000e-59 239.0
22 TraesCS1A01G398800 chr5B 87.931 58 5 2 762 818 13771115 13771171 2.170000e-07 67.6
23 TraesCS1A01G398800 chr4A 86.740 543 32 14 2591 3108 618382733 618383260 4.870000e-158 568.0
24 TraesCS1A01G398800 chr3D 83.446 592 67 16 1 578 513942018 513942592 3.850000e-144 521.0
25 TraesCS1A01G398800 chr6A 83.168 606 63 18 21 588 189430480 189429876 4.980000e-143 518.0
26 TraesCS1A01G398800 chr6A 90.000 60 4 2 754 813 189429774 189429717 3.600000e-10 76.8
27 TraesCS1A01G398800 chr2A 82.838 606 52 23 1 556 751646070 751645467 2.330000e-136 496.0
28 TraesCS1A01G398800 chr2A 90.202 347 14 11 2591 2932 35739440 35739771 5.160000e-118 435.0
29 TraesCS1A01G398800 chr2A 88.921 343 18 11 2595 2932 609059303 609058976 4.040000e-109 405.0
30 TraesCS1A01G398800 chr2A 81.447 539 56 19 60 556 87561660 87562196 5.230000e-108 401.0
31 TraesCS1A01G398800 chr2A 81.977 172 17 8 652 813 87562274 87562441 2.110000e-27 134.0
32 TraesCS1A01G398800 chr7A 82.601 592 68 19 2 578 612740053 612740624 1.090000e-134 490.0
33 TraesCS1A01G398800 chr5A 84.257 343 17 19 2591 2932 654873879 654873573 1.960000e-77 300.0
34 TraesCS1A01G398800 chr5A 80.829 193 17 9 374 556 63626102 63626284 2.110000e-27 134.0
35 TraesCS1A01G398800 chr5A 89.524 105 9 2 544 646 398722115 398722219 7.580000e-27 132.0
36 TraesCS1A01G398800 chr5A 80.105 191 24 5 636 813 63626281 63626470 2.730000e-26 130.0
37 TraesCS1A01G398800 chr3B 82.759 232 20 2 2897 3108 778627504 778627735 4.430000e-44 189.0
38 TraesCS1A01G398800 chr3B 82.759 232 20 2 2897 3108 778653064 778653295 4.430000e-44 189.0
39 TraesCS1A01G398800 chr3B 92.784 97 7 0 548 644 154213768 154213864 1.260000e-29 141.0
40 TraesCS1A01G398800 chr4B 89.167 120 11 2 223 340 387820195 387820076 7.520000e-32 148.0
41 TraesCS1A01G398800 chr4B 95.556 90 4 0 553 642 659147160 659147071 9.730000e-31 145.0
42 TraesCS1A01G398800 chr3A 94.565 92 3 2 547 636 57265058 57265149 1.260000e-29 141.0
43 TraesCS1A01G398800 chr2D 92.157 102 5 3 549 650 619480786 619480884 1.260000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G398800 chr1A 563757221 563760586 3365 False 6216.0 6216 100.0000 1 3366 1 chr1A.!!$F1 3365
1 TraesCS1A01G398800 chr1B 652479365 652481280 1915 False 972.0 1701 87.6430 1080 2883 2 chr1B.!!$F3 1803
2 TraesCS1A01G398800 chr1B 473223349 473224199 850 False 300.5 484 81.4275 1 813 2 chr1B.!!$F2 812
3 TraesCS1A01G398800 chr1D 470089629 470091933 2304 False 1386.5 1555 88.7985 857 3256 2 chr1D.!!$F1 2399
4 TraesCS1A01G398800 chr6B 502723516 502724344 828 False 1423.0 1423 97.7220 1 826 1 chr6B.!!$F1 825
5 TraesCS1A01G398800 chr6B 705834027 705834832 805 True 1312.0 1312 95.9950 1 813 1 chr6B.!!$R3 812
6 TraesCS1A01G398800 chr6B 112935769 112936296 527 True 579.0 579 87.1090 2591 3108 1 chr6B.!!$R1 517
7 TraesCS1A01G398800 chr7B 11766583 11767109 526 True 560.0 560 86.5560 2591 3108 1 chr7B.!!$R1 517
8 TraesCS1A01G398800 chr7B 735924560 735925432 872 False 505.0 664 90.5325 1 825 2 chr7B.!!$F2 824
9 TraesCS1A01G398800 chr7B 715810265 715810874 609 True 254.0 289 81.6735 1 554 2 chr7B.!!$R2 553
10 TraesCS1A01G398800 chr5B 452824764 452825624 860 False 506.5 656 91.0795 1 811 2 chr5B.!!$F2 810
11 TraesCS1A01G398800 chr5B 669636325 669636937 612 False 257.5 276 85.7910 1 556 2 chr5B.!!$F3 555
12 TraesCS1A01G398800 chr4A 618382733 618383260 527 False 568.0 568 86.7400 2591 3108 1 chr4A.!!$F1 517
13 TraesCS1A01G398800 chr3D 513942018 513942592 574 False 521.0 521 83.4460 1 578 1 chr3D.!!$F1 577
14 TraesCS1A01G398800 chr6A 189429717 189430480 763 True 297.4 518 86.5840 21 813 2 chr6A.!!$R1 792
15 TraesCS1A01G398800 chr2A 751645467 751646070 603 True 496.0 496 82.8380 1 556 1 chr2A.!!$R2 555
16 TraesCS1A01G398800 chr2A 87561660 87562441 781 False 267.5 401 81.7120 60 813 2 chr2A.!!$F2 753
17 TraesCS1A01G398800 chr7A 612740053 612740624 571 False 490.0 490 82.6010 2 578 1 chr7A.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 1066 0.109458 CGTGCACGCTTACTAGTGGA 60.109 55.0 28.16 0.0 38.68 4.02 F
1064 1316 0.032952 TCCAACTTCAACTCGTCCCG 59.967 55.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2584 0.035317 ACTTCTCACGGCTGCAATGA 59.965 50.0 0.5 3.35 0.0 2.57 R
2653 2971 0.607620 TGCACATCACCAGTCGATCA 59.392 50.0 0.0 0.00 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 386 6.412072 GTCTGCAACGCTAATGAAATATGAAC 59.588 38.462 0.00 0.00 0.00 3.18
814 1065 0.388134 ACGTGCACGCTTACTAGTGG 60.388 55.000 37.35 8.78 44.43 4.00
815 1066 0.109458 CGTGCACGCTTACTAGTGGA 60.109 55.000 28.16 0.00 38.68 4.02
816 1067 1.667756 CGTGCACGCTTACTAGTGGAA 60.668 52.381 28.16 0.00 40.23 3.53
817 1068 2.409975 GTGCACGCTTACTAGTGGAAA 58.590 47.619 5.39 0.00 40.23 3.13
818 1069 2.412089 GTGCACGCTTACTAGTGGAAAG 59.588 50.000 5.39 2.39 40.23 2.62
819 1070 2.297880 TGCACGCTTACTAGTGGAAAGA 59.702 45.455 5.39 0.00 35.82 2.52
820 1071 3.243941 TGCACGCTTACTAGTGGAAAGAA 60.244 43.478 5.39 0.00 35.82 2.52
821 1072 3.744426 GCACGCTTACTAGTGGAAAGAAA 59.256 43.478 5.39 0.00 38.68 2.52
822 1073 4.143094 GCACGCTTACTAGTGGAAAGAAAG 60.143 45.833 5.39 0.05 38.68 2.62
823 1074 5.227908 CACGCTTACTAGTGGAAAGAAAGA 58.772 41.667 5.39 0.00 36.18 2.52
824 1075 5.694910 CACGCTTACTAGTGGAAAGAAAGAA 59.305 40.000 5.39 0.00 36.18 2.52
825 1076 6.202188 CACGCTTACTAGTGGAAAGAAAGAAA 59.798 38.462 5.39 0.00 36.18 2.52
826 1077 6.764560 ACGCTTACTAGTGGAAAGAAAGAAAA 59.235 34.615 5.39 0.00 36.18 2.29
827 1078 7.070183 CGCTTACTAGTGGAAAGAAAGAAAAC 58.930 38.462 5.39 0.00 0.00 2.43
828 1079 7.254658 CGCTTACTAGTGGAAAGAAAGAAAACA 60.255 37.037 5.39 0.00 0.00 2.83
829 1080 8.568794 GCTTACTAGTGGAAAGAAAGAAAACAT 58.431 33.333 5.39 0.00 0.00 2.71
844 1095 9.914131 GAAAGAAAACATAATTCTATATGGGCC 57.086 33.333 0.00 0.00 36.14 5.80
845 1096 7.687941 AGAAAACATAATTCTATATGGGCCG 57.312 36.000 0.00 0.00 37.55 6.13
846 1097 6.659242 AGAAAACATAATTCTATATGGGCCGG 59.341 38.462 0.00 0.00 37.55 6.13
847 1098 3.886123 ACATAATTCTATATGGGCCGGC 58.114 45.455 21.18 21.18 37.55 6.13
848 1099 3.214328 CATAATTCTATATGGGCCGGCC 58.786 50.000 38.57 38.57 31.06 6.13
887 1138 3.343941 TCGAAATCCGAAATCCAACCT 57.656 42.857 0.00 0.00 45.43 3.50
888 1139 3.267483 TCGAAATCCGAAATCCAACCTC 58.733 45.455 0.00 0.00 45.43 3.85
977 1228 0.575390 CGTAGCCAAGAAATACGCCG 59.425 55.000 0.00 0.00 36.28 6.46
1000 1251 1.095228 GCATTAACTGCGCCTGCCTA 61.095 55.000 4.18 0.00 41.97 3.93
1001 1252 1.597742 CATTAACTGCGCCTGCCTAT 58.402 50.000 4.18 0.00 41.78 2.57
1002 1253 1.265095 CATTAACTGCGCCTGCCTATG 59.735 52.381 4.18 0.00 41.78 2.23
1003 1254 1.095228 TTAACTGCGCCTGCCTATGC 61.095 55.000 4.18 0.00 41.78 3.14
1009 1260 3.133464 GCCTGCCTATGCGCACAA 61.133 61.111 14.90 2.38 41.78 3.33
1010 1261 3.104766 CCTGCCTATGCGCACAAG 58.895 61.111 14.90 13.93 41.78 3.16
1011 1262 2.406401 CTGCCTATGCGCACAAGC 59.594 61.111 14.90 16.72 41.78 4.01
1012 1263 3.117175 CTGCCTATGCGCACAAGCC 62.117 63.158 14.90 3.50 41.78 4.35
1013 1264 2.825836 GCCTATGCGCACAAGCCT 60.826 61.111 14.90 0.00 37.52 4.58
1014 1265 3.104766 CCTATGCGCACAAGCCTG 58.895 61.111 14.90 0.00 37.52 4.85
1015 1266 2.406401 CTATGCGCACAAGCCTGC 59.594 61.111 14.90 0.00 37.52 4.85
1016 1267 3.117175 CTATGCGCACAAGCCTGCC 62.117 63.158 14.90 0.00 37.52 4.85
1017 1268 3.626996 TATGCGCACAAGCCTGCCT 62.627 57.895 14.90 0.00 37.52 4.75
1027 1278 1.138661 CAAGCCTGCCTGGTTTCAAAA 59.861 47.619 0.00 0.00 37.13 2.44
1037 1288 5.990996 TGCCTGGTTTCAAAATTTCATCTTC 59.009 36.000 0.00 0.00 0.00 2.87
1058 1310 2.762535 TCCCGATCCAACTTCAACTC 57.237 50.000 0.00 0.00 0.00 3.01
1059 1311 1.067142 TCCCGATCCAACTTCAACTCG 60.067 52.381 0.00 0.00 0.00 4.18
1060 1312 1.337823 CCCGATCCAACTTCAACTCGT 60.338 52.381 0.00 0.00 0.00 4.18
1061 1313 1.993370 CCGATCCAACTTCAACTCGTC 59.007 52.381 0.00 0.00 0.00 4.20
1064 1316 0.032952 TCCAACTTCAACTCGTCCCG 59.967 55.000 0.00 0.00 0.00 5.14
1076 1340 4.779733 GTCCCGGCCAGGAGAGGA 62.780 72.222 8.36 0.00 45.00 3.71
1100 1380 3.696426 GGCGATCGAGATGCACGC 61.696 66.667 21.57 7.03 46.79 5.34
1148 1428 4.864334 GGCCGCCAGGTCCATCAG 62.864 72.222 3.91 0.00 40.50 2.90
1151 1431 4.457496 CGCCAGGTCCATCAGCGT 62.457 66.667 6.67 0.00 41.78 5.07
1152 1432 2.512515 GCCAGGTCCATCAGCGTC 60.513 66.667 0.00 0.00 0.00 5.19
1153 1433 2.202797 CCAGGTCCATCAGCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
1195 1475 2.513897 GTACCCCGTGCCTGCATC 60.514 66.667 0.00 0.00 0.00 3.91
1196 1476 2.687200 TACCCCGTGCCTGCATCT 60.687 61.111 0.00 0.00 0.00 2.90
1197 1477 3.030168 TACCCCGTGCCTGCATCTG 62.030 63.158 0.00 0.00 0.00 2.90
1231 1511 1.300971 TTGCTTCGTGCCTGCTGATC 61.301 55.000 0.00 0.00 42.00 2.92
1235 1515 0.390340 TTCGTGCCTGCTGATCAGTC 60.390 55.000 23.38 15.78 41.25 3.51
1336 1623 4.093291 AGGCAGCAGAAGGAGGCG 62.093 66.667 0.00 0.00 34.54 5.52
1353 1643 1.153901 CGGACCGTGAGCGTTACAT 60.154 57.895 5.48 0.00 36.15 2.29
1368 1658 1.595311 TACATGGATGGTTCAGGGCT 58.405 50.000 0.00 0.00 0.00 5.19
1385 1675 1.215382 CTGACGTCGGCCAAGATCA 59.785 57.895 12.25 0.00 0.00 2.92
1396 1686 4.838152 AAGATCACGCCGGCGCAT 62.838 61.111 46.22 36.82 44.19 4.73
1408 1698 2.815211 GCGCATCTGCAGGACGAA 60.815 61.111 22.31 1.52 42.21 3.85
1409 1699 2.806856 GCGCATCTGCAGGACGAAG 61.807 63.158 22.31 8.69 42.21 3.79
1410 1700 2.806856 CGCATCTGCAGGACGAAGC 61.807 63.158 15.13 8.20 42.21 3.86
1411 1701 2.806856 GCATCTGCAGGACGAAGCG 61.807 63.158 15.13 0.00 41.59 4.68
1412 1702 2.169789 CATCTGCAGGACGAAGCGG 61.170 63.158 15.13 0.00 38.47 5.52
1413 1703 2.989253 TCTGCAGGACGAAGCGGA 60.989 61.111 15.13 0.00 43.41 5.54
1414 1704 2.811317 CTGCAGGACGAAGCGGAC 60.811 66.667 5.57 0.00 39.47 4.79
1415 1705 4.717629 TGCAGGACGAAGCGGACG 62.718 66.667 0.00 0.00 0.00 4.79
1416 1706 4.415332 GCAGGACGAAGCGGACGA 62.415 66.667 7.16 0.00 34.70 4.20
1417 1707 2.504244 CAGGACGAAGCGGACGAC 60.504 66.667 7.16 1.62 34.70 4.34
1450 1740 2.513026 ATCTGCTGCACACGGAGGAC 62.513 60.000 0.00 0.00 0.00 3.85
1451 1741 4.314440 TGCTGCACACGGAGGACC 62.314 66.667 0.00 0.00 0.00 4.46
1731 2024 2.928361 CAACGACGACACACCTGC 59.072 61.111 0.00 0.00 0.00 4.85
1766 2059 1.466024 CCGAGTCCGACGAAGAAGAAG 60.466 57.143 0.00 0.00 38.22 2.85
1830 2123 4.897224 TCATTTGCTTGATTCGATTCGAC 58.103 39.130 8.55 0.00 34.89 4.20
2047 2349 2.815647 GCGGCCCAAGAAGACGAG 60.816 66.667 0.00 0.00 0.00 4.18
2080 2382 2.094659 CGACATCAGCGACCACCAC 61.095 63.158 0.00 0.00 0.00 4.16
2100 2402 2.432628 GAGGAACACGCCGTGGAG 60.433 66.667 22.60 0.00 37.94 3.86
2101 2403 4.681978 AGGAACACGCCGTGGAGC 62.682 66.667 22.60 9.77 37.94 4.70
2201 2503 3.251571 GTCGAACTCAGGTACCAATGTC 58.748 50.000 15.94 3.72 0.00 3.06
2203 2505 2.028476 CGAACTCAGGTACCAATGTCCA 60.028 50.000 15.94 0.00 0.00 4.02
2205 2507 3.703001 ACTCAGGTACCAATGTCCAAG 57.297 47.619 15.94 0.63 0.00 3.61
2206 2508 3.248024 ACTCAGGTACCAATGTCCAAGA 58.752 45.455 15.94 0.00 0.00 3.02
2207 2509 3.846588 ACTCAGGTACCAATGTCCAAGAT 59.153 43.478 15.94 0.00 0.00 2.40
2210 2512 4.288366 TCAGGTACCAATGTCCAAGATGAA 59.712 41.667 15.94 0.00 0.00 2.57
2211 2513 4.637534 CAGGTACCAATGTCCAAGATGAAG 59.362 45.833 15.94 0.00 0.00 3.02
2213 2515 4.878397 GGTACCAATGTCCAAGATGAAGAG 59.122 45.833 7.15 0.00 0.00 2.85
2214 2516 4.916041 ACCAATGTCCAAGATGAAGAGA 57.084 40.909 0.00 0.00 0.00 3.10
2216 2518 5.824421 ACCAATGTCCAAGATGAAGAGATT 58.176 37.500 0.00 0.00 0.00 2.40
2218 2520 5.884232 CCAATGTCCAAGATGAAGAGATTGA 59.116 40.000 9.81 0.00 41.39 2.57
2219 2521 6.038382 CCAATGTCCAAGATGAAGAGATTGAG 59.962 42.308 9.81 0.00 41.39 3.02
2220 2522 5.095145 TGTCCAAGATGAAGAGATTGAGG 57.905 43.478 0.00 0.00 0.00 3.86
2221 2523 4.533707 TGTCCAAGATGAAGAGATTGAGGT 59.466 41.667 0.00 0.00 0.00 3.85
2222 2524 4.874966 GTCCAAGATGAAGAGATTGAGGTG 59.125 45.833 0.00 0.00 0.00 4.00
2223 2525 4.533707 TCCAAGATGAAGAGATTGAGGTGT 59.466 41.667 0.00 0.00 0.00 4.16
2224 2526 4.634883 CCAAGATGAAGAGATTGAGGTGTG 59.365 45.833 0.00 0.00 0.00 3.82
2225 2527 5.485620 CAAGATGAAGAGATTGAGGTGTGA 58.514 41.667 0.00 0.00 0.00 3.58
2226 2528 5.752036 AGATGAAGAGATTGAGGTGTGAA 57.248 39.130 0.00 0.00 0.00 3.18
2227 2529 5.732633 AGATGAAGAGATTGAGGTGTGAAG 58.267 41.667 0.00 0.00 0.00 3.02
2228 2530 3.668447 TGAAGAGATTGAGGTGTGAAGC 58.332 45.455 0.00 0.00 0.00 3.86
2229 2531 3.326006 TGAAGAGATTGAGGTGTGAAGCT 59.674 43.478 0.00 0.00 0.00 3.74
2230 2532 4.528206 TGAAGAGATTGAGGTGTGAAGCTA 59.472 41.667 0.00 0.00 0.00 3.32
2231 2533 4.734398 AGAGATTGAGGTGTGAAGCTAG 57.266 45.455 0.00 0.00 0.00 3.42
2232 2534 3.118811 AGAGATTGAGGTGTGAAGCTAGC 60.119 47.826 6.62 6.62 0.00 3.42
2233 2535 2.836981 AGATTGAGGTGTGAAGCTAGCT 59.163 45.455 12.68 12.68 0.00 3.32
2234 2536 4.026744 AGATTGAGGTGTGAAGCTAGCTA 58.973 43.478 19.70 0.00 0.00 3.32
2235 2537 3.876274 TTGAGGTGTGAAGCTAGCTAG 57.124 47.619 19.70 16.84 0.00 3.42
2236 2538 2.808919 TGAGGTGTGAAGCTAGCTAGT 58.191 47.619 19.70 2.33 0.00 2.57
2237 2539 3.964411 TGAGGTGTGAAGCTAGCTAGTA 58.036 45.455 19.70 4.42 0.00 1.82
2238 2540 3.948473 TGAGGTGTGAAGCTAGCTAGTAG 59.052 47.826 19.70 0.00 0.00 2.57
2250 2552 5.071370 GCTAGCTAGTAGGTATTGGACTGA 58.929 45.833 21.62 0.00 0.00 3.41
2257 2563 7.039363 GCTAGTAGGTATTGGACTGAGAATGAT 60.039 40.741 0.00 0.00 0.00 2.45
2275 2584 6.938030 AGAATGATTGAATTGGTGTTGCATTT 59.062 30.769 0.00 0.00 0.00 2.32
2387 2696 2.903855 CTGCCCGCATCCATGTCC 60.904 66.667 0.00 0.00 0.00 4.02
2437 2746 3.067601 TGCTCATAATCAGCATTGCAAGG 59.932 43.478 11.91 6.76 42.09 3.61
2533 2846 9.136952 ACAAATACAGTACACGTTCTAATTCTC 57.863 33.333 0.00 0.00 0.00 2.87
2569 2884 4.032558 GCGAGAAACCTAATACTTGTTCCG 59.967 45.833 0.00 0.00 0.00 4.30
2606 2921 3.261580 TGTGTCTGCGATTCCTGTAATG 58.738 45.455 0.00 0.00 0.00 1.90
2620 2938 7.724305 TTCCTGTAATGTTCTTCAGTTGTAC 57.276 36.000 0.00 0.00 0.00 2.90
2623 2941 8.304596 TCCTGTAATGTTCTTCAGTTGTACTAG 58.695 37.037 0.00 0.00 0.00 2.57
2626 2944 9.903682 TGTAATGTTCTTCAGTTGTACTAGTAC 57.096 33.333 23.58 23.58 36.63 2.73
2653 2971 3.474920 ACATTAGTTCTCCCCTCCCATT 58.525 45.455 0.00 0.00 0.00 3.16
2662 2980 0.107456 CCCCTCCCATTGATCGACTG 59.893 60.000 0.00 0.00 0.00 3.51
2734 3216 0.249911 GTCCACACTCTTGTTCGCCT 60.250 55.000 0.00 0.00 31.66 5.52
2811 3298 0.037232 AAAGTGAGTCGCTGGCCTAC 60.037 55.000 7.04 0.00 0.00 3.18
2812 3299 1.185618 AAGTGAGTCGCTGGCCTACA 61.186 55.000 7.04 0.00 0.00 2.74
2939 3434 5.229887 GCTATGCAACAAATGTTTATGTCCG 59.770 40.000 0.00 0.00 35.83 4.79
2959 3454 2.928694 GGTTTTGCCGACATGTTAGTG 58.071 47.619 0.00 0.00 0.00 2.74
3078 3596 3.003378 GGAGTTTCAACCGGAACAAGAAG 59.997 47.826 9.46 0.00 34.56 2.85
3114 3632 3.636764 TGTGAGTACTGAAGACTCTGCAA 59.363 43.478 0.00 0.00 43.19 4.08
3181 3699 1.293498 GCACCGATGACCTGTCAGT 59.707 57.895 6.13 0.00 43.61 3.41
3185 3703 3.190079 CACCGATGACCTGTCAGTAATG 58.810 50.000 6.13 0.00 43.61 1.90
3210 3728 3.450578 GAACTATACCGTGGCGATTTGA 58.549 45.455 0.00 0.00 0.00 2.69
3236 3754 6.935240 TCAGATACCCCGAATTGATAATCT 57.065 37.500 0.00 0.00 0.00 2.40
3248 3766 8.499162 CCGAATTGATAATCTGATACAAGTTCC 58.501 37.037 0.00 0.00 0.00 3.62
3256 3774 7.698163 AATCTGATACAAGTTCCCTAGGATT 57.302 36.000 11.48 0.00 0.00 3.01
3257 3775 7.698163 ATCTGATACAAGTTCCCTAGGATTT 57.302 36.000 11.48 0.00 0.00 2.17
3258 3776 7.510675 TCTGATACAAGTTCCCTAGGATTTT 57.489 36.000 11.48 0.00 0.00 1.82
3259 3777 8.618240 TCTGATACAAGTTCCCTAGGATTTTA 57.382 34.615 11.48 0.00 0.00 1.52
3260 3778 8.705594 TCTGATACAAGTTCCCTAGGATTTTAG 58.294 37.037 11.48 0.00 0.00 1.85
3261 3779 8.618240 TGATACAAGTTCCCTAGGATTTTAGA 57.382 34.615 11.48 0.00 0.00 2.10
3262 3780 8.705594 TGATACAAGTTCCCTAGGATTTTAGAG 58.294 37.037 11.48 0.00 0.00 2.43
3263 3781 5.746284 ACAAGTTCCCTAGGATTTTAGAGC 58.254 41.667 11.48 0.00 0.00 4.09
3264 3782 5.126779 CAAGTTCCCTAGGATTTTAGAGCC 58.873 45.833 11.48 0.00 0.00 4.70
3265 3783 4.371681 AGTTCCCTAGGATTTTAGAGCCA 58.628 43.478 11.48 0.00 0.00 4.75
3266 3784 4.410555 AGTTCCCTAGGATTTTAGAGCCAG 59.589 45.833 11.48 0.00 0.00 4.85
3267 3785 3.318313 TCCCTAGGATTTTAGAGCCAGG 58.682 50.000 11.48 0.00 0.00 4.45
3268 3786 2.224646 CCCTAGGATTTTAGAGCCAGGC 60.225 54.545 11.48 1.84 0.00 4.85
3269 3787 2.708325 CCTAGGATTTTAGAGCCAGGCT 59.292 50.000 16.12 16.12 43.88 4.58
3270 3788 3.904339 CCTAGGATTTTAGAGCCAGGCTA 59.096 47.826 16.16 0.00 39.88 3.93
3271 3789 3.847671 AGGATTTTAGAGCCAGGCTAC 57.152 47.619 16.16 8.41 39.88 3.58
3272 3790 3.115390 AGGATTTTAGAGCCAGGCTACA 58.885 45.455 16.16 1.33 39.88 2.74
3273 3791 3.523564 AGGATTTTAGAGCCAGGCTACAA 59.476 43.478 16.16 8.64 39.88 2.41
3274 3792 3.628032 GGATTTTAGAGCCAGGCTACAAC 59.372 47.826 16.16 0.92 39.88 3.32
3275 3793 2.380084 TTTAGAGCCAGGCTACAACG 57.620 50.000 16.16 0.00 39.88 4.10
3276 3794 1.552578 TTAGAGCCAGGCTACAACGA 58.447 50.000 16.16 0.00 39.88 3.85
3277 3795 0.815734 TAGAGCCAGGCTACAACGAC 59.184 55.000 16.16 0.00 39.88 4.34
3278 3796 0.900647 AGAGCCAGGCTACAACGACT 60.901 55.000 16.16 1.67 39.88 4.18
3279 3797 0.037232 GAGCCAGGCTACAACGACTT 60.037 55.000 16.16 0.00 39.88 3.01
3280 3798 0.320771 AGCCAGGCTACAACGACTTG 60.321 55.000 14.18 0.00 36.99 3.16
3281 3799 1.298859 GCCAGGCTACAACGACTTGG 61.299 60.000 3.29 0.00 0.00 3.61
3282 3800 0.320374 CCAGGCTACAACGACTTGGA 59.680 55.000 0.00 0.00 0.00 3.53
3283 3801 1.673033 CCAGGCTACAACGACTTGGAG 60.673 57.143 0.00 0.00 40.96 3.86
3284 3802 1.272490 CAGGCTACAACGACTTGGAGA 59.728 52.381 2.27 0.00 40.51 3.71
3285 3803 1.968493 AGGCTACAACGACTTGGAGAA 59.032 47.619 2.27 0.00 40.51 2.87
3286 3804 2.028930 AGGCTACAACGACTTGGAGAAG 60.029 50.000 2.27 0.00 40.51 2.85
3287 3805 2.029290 GGCTACAACGACTTGGAGAAGA 60.029 50.000 2.27 0.00 40.51 2.87
3288 3806 3.554337 GGCTACAACGACTTGGAGAAGAA 60.554 47.826 2.27 0.00 40.51 2.52
3289 3807 3.675698 GCTACAACGACTTGGAGAAGAAG 59.324 47.826 2.27 0.00 40.51 2.85
3290 3808 4.558898 GCTACAACGACTTGGAGAAGAAGA 60.559 45.833 2.27 0.00 40.51 2.87
3291 3809 4.402056 ACAACGACTTGGAGAAGAAGAA 57.598 40.909 0.00 0.00 32.98 2.52
3292 3810 4.372656 ACAACGACTTGGAGAAGAAGAAG 58.627 43.478 0.00 0.00 32.98 2.85
3293 3811 4.099573 ACAACGACTTGGAGAAGAAGAAGA 59.900 41.667 0.00 0.00 32.98 2.87
3294 3812 4.939052 ACGACTTGGAGAAGAAGAAGAA 57.061 40.909 0.00 0.00 32.98 2.52
3295 3813 4.877282 ACGACTTGGAGAAGAAGAAGAAG 58.123 43.478 0.00 0.00 32.98 2.85
3296 3814 4.585162 ACGACTTGGAGAAGAAGAAGAAGA 59.415 41.667 0.00 0.00 32.98 2.87
3297 3815 5.245075 ACGACTTGGAGAAGAAGAAGAAGAT 59.755 40.000 0.00 0.00 32.98 2.40
3298 3816 5.576384 CGACTTGGAGAAGAAGAAGAAGATG 59.424 44.000 0.00 0.00 32.98 2.90
3299 3817 6.571344 CGACTTGGAGAAGAAGAAGAAGATGA 60.571 42.308 0.00 0.00 32.98 2.92
3300 3818 6.463360 ACTTGGAGAAGAAGAAGAAGATGAC 58.537 40.000 0.00 0.00 32.98 3.06
3301 3819 6.269769 ACTTGGAGAAGAAGAAGAAGATGACT 59.730 38.462 0.00 0.00 32.98 3.41
3302 3820 6.279513 TGGAGAAGAAGAAGAAGATGACTC 57.720 41.667 0.00 0.00 0.00 3.36
3303 3821 5.105957 TGGAGAAGAAGAAGAAGATGACTCG 60.106 44.000 0.00 0.00 0.00 4.18
3304 3822 5.124776 GGAGAAGAAGAAGAAGATGACTCGA 59.875 44.000 0.00 0.00 0.00 4.04
3305 3823 6.183360 GGAGAAGAAGAAGAAGATGACTCGAT 60.183 42.308 0.00 0.00 0.00 3.59
3306 3824 6.795399 AGAAGAAGAAGAAGATGACTCGATC 58.205 40.000 0.00 0.00 0.00 3.69
3307 3825 5.514274 AGAAGAAGAAGATGACTCGATCC 57.486 43.478 0.00 0.00 0.00 3.36
3308 3826 4.952957 AGAAGAAGAAGATGACTCGATCCA 59.047 41.667 0.00 0.00 0.00 3.41
3309 3827 4.647424 AGAAGAAGATGACTCGATCCAC 57.353 45.455 0.00 0.00 0.00 4.02
3310 3828 3.066064 AGAAGAAGATGACTCGATCCACG 59.934 47.826 0.00 0.00 44.09 4.94
3319 3837 3.398920 CGATCCACGAAATGCGCT 58.601 55.556 9.73 0.00 46.04 5.92
3320 3838 2.588731 CGATCCACGAAATGCGCTA 58.411 52.632 9.73 0.00 46.04 4.26
3321 3839 1.139989 CGATCCACGAAATGCGCTAT 58.860 50.000 9.73 0.00 46.04 2.97
3322 3840 2.324860 CGATCCACGAAATGCGCTATA 58.675 47.619 9.73 0.00 46.04 1.31
3323 3841 2.729360 CGATCCACGAAATGCGCTATAA 59.271 45.455 9.73 0.00 46.04 0.98
3324 3842 3.181540 CGATCCACGAAATGCGCTATAAG 60.182 47.826 9.73 0.00 46.04 1.73
3325 3843 2.479837 TCCACGAAATGCGCTATAAGG 58.520 47.619 9.73 2.08 46.04 2.69
3326 3844 1.531149 CCACGAAATGCGCTATAAGGG 59.469 52.381 9.73 0.00 46.04 3.95
3327 3845 2.479837 CACGAAATGCGCTATAAGGGA 58.520 47.619 9.73 0.00 46.04 4.20
3328 3846 2.869801 CACGAAATGCGCTATAAGGGAA 59.130 45.455 9.73 0.00 46.04 3.97
3329 3847 3.311322 CACGAAATGCGCTATAAGGGAAA 59.689 43.478 9.73 0.00 46.04 3.13
3330 3848 3.560068 ACGAAATGCGCTATAAGGGAAAG 59.440 43.478 9.73 0.00 46.04 2.62
3331 3849 3.058914 CGAAATGCGCTATAAGGGAAAGG 60.059 47.826 9.73 0.00 0.00 3.11
3332 3850 3.577805 AATGCGCTATAAGGGAAAGGT 57.422 42.857 9.73 0.00 0.00 3.50
3333 3851 4.699925 AATGCGCTATAAGGGAAAGGTA 57.300 40.909 9.73 0.00 0.00 3.08
3334 3852 4.910458 ATGCGCTATAAGGGAAAGGTAT 57.090 40.909 9.73 0.00 0.00 2.73
3335 3853 4.699925 TGCGCTATAAGGGAAAGGTATT 57.300 40.909 9.73 0.00 0.00 1.89
3336 3854 5.811796 TGCGCTATAAGGGAAAGGTATTA 57.188 39.130 9.73 0.00 0.00 0.98
3337 3855 6.368779 TGCGCTATAAGGGAAAGGTATTAT 57.631 37.500 9.73 0.00 0.00 1.28
3338 3856 6.170506 TGCGCTATAAGGGAAAGGTATTATG 58.829 40.000 9.73 0.00 0.00 1.90
3339 3857 6.171213 GCGCTATAAGGGAAAGGTATTATGT 58.829 40.000 0.00 0.00 0.00 2.29
3340 3858 6.092259 GCGCTATAAGGGAAAGGTATTATGTG 59.908 42.308 0.00 0.00 0.00 3.21
3341 3859 6.092259 CGCTATAAGGGAAAGGTATTATGTGC 59.908 42.308 0.00 0.00 0.00 4.57
3342 3860 6.092259 GCTATAAGGGAAAGGTATTATGTGCG 59.908 42.308 0.00 0.00 0.00 5.34
3343 3861 3.208747 AGGGAAAGGTATTATGTGCGG 57.791 47.619 0.00 0.00 0.00 5.69
3344 3862 2.508300 AGGGAAAGGTATTATGTGCGGT 59.492 45.455 0.00 0.00 0.00 5.68
3345 3863 3.712733 AGGGAAAGGTATTATGTGCGGTA 59.287 43.478 0.00 0.00 0.00 4.02
3346 3864 4.164604 AGGGAAAGGTATTATGTGCGGTAA 59.835 41.667 0.00 0.00 0.00 2.85
3347 3865 4.883006 GGGAAAGGTATTATGTGCGGTAAA 59.117 41.667 0.00 0.00 0.00 2.01
3348 3866 5.008316 GGGAAAGGTATTATGTGCGGTAAAG 59.992 44.000 0.00 0.00 0.00 1.85
3349 3867 5.818857 GGAAAGGTATTATGTGCGGTAAAGA 59.181 40.000 0.00 0.00 0.00 2.52
3350 3868 6.316890 GGAAAGGTATTATGTGCGGTAAAGAA 59.683 38.462 0.00 0.00 0.00 2.52
3351 3869 7.148205 GGAAAGGTATTATGTGCGGTAAAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
3352 3870 7.875327 AAGGTATTATGTGCGGTAAAGAAAT 57.125 32.000 0.00 0.00 0.00 2.17
3353 3871 7.259290 AGGTATTATGTGCGGTAAAGAAATG 57.741 36.000 0.00 0.00 0.00 2.32
3354 3872 6.262273 AGGTATTATGTGCGGTAAAGAAATGG 59.738 38.462 0.00 0.00 0.00 3.16
3355 3873 6.038936 GGTATTATGTGCGGTAAAGAAATGGT 59.961 38.462 0.00 0.00 0.00 3.55
3356 3874 5.554822 TTATGTGCGGTAAAGAAATGGTC 57.445 39.130 0.00 0.00 0.00 4.02
3357 3875 2.852449 TGTGCGGTAAAGAAATGGTCA 58.148 42.857 0.00 0.00 0.00 4.02
3358 3876 2.811431 TGTGCGGTAAAGAAATGGTCAG 59.189 45.455 0.00 0.00 0.00 3.51
3359 3877 2.812011 GTGCGGTAAAGAAATGGTCAGT 59.188 45.455 0.00 0.00 0.00 3.41
3360 3878 3.252458 GTGCGGTAAAGAAATGGTCAGTT 59.748 43.478 0.00 0.00 0.00 3.16
3361 3879 4.453136 GTGCGGTAAAGAAATGGTCAGTTA 59.547 41.667 0.00 0.00 0.00 2.24
3362 3880 5.049267 GTGCGGTAAAGAAATGGTCAGTTAA 60.049 40.000 0.00 0.00 0.00 2.01
3363 3881 5.049267 TGCGGTAAAGAAATGGTCAGTTAAC 60.049 40.000 0.00 0.00 0.00 2.01
3364 3882 5.049267 GCGGTAAAGAAATGGTCAGTTAACA 60.049 40.000 8.61 0.00 0.00 2.41
3365 3883 6.513720 GCGGTAAAGAAATGGTCAGTTAACAA 60.514 38.462 8.61 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 386 3.194861 TGCGGTTAGGAAATTCATCTCG 58.805 45.455 0.00 0.00 0.00 4.04
818 1069 9.914131 GGCCCATATAGAATTATGTTTTCTTTC 57.086 33.333 0.00 0.00 35.19 2.62
819 1070 8.576442 CGGCCCATATAGAATTATGTTTTCTTT 58.424 33.333 0.00 0.00 35.19 2.52
820 1071 7.176690 CCGGCCCATATAGAATTATGTTTTCTT 59.823 37.037 0.00 0.00 35.19 2.52
821 1072 6.659242 CCGGCCCATATAGAATTATGTTTTCT 59.341 38.462 0.00 0.00 37.25 2.52
822 1073 6.625081 GCCGGCCCATATAGAATTATGTTTTC 60.625 42.308 18.11 0.00 0.00 2.29
823 1074 5.185056 GCCGGCCCATATAGAATTATGTTTT 59.815 40.000 18.11 0.00 0.00 2.43
824 1075 4.705023 GCCGGCCCATATAGAATTATGTTT 59.295 41.667 18.11 0.00 0.00 2.83
825 1076 4.270008 GCCGGCCCATATAGAATTATGTT 58.730 43.478 18.11 0.00 0.00 2.71
826 1077 3.371595 GGCCGGCCCATATAGAATTATGT 60.372 47.826 36.64 0.00 0.00 2.29
827 1078 3.214328 GGCCGGCCCATATAGAATTATG 58.786 50.000 36.64 0.00 0.00 1.90
828 1079 3.577805 GGCCGGCCCATATAGAATTAT 57.422 47.619 36.64 0.00 0.00 1.28
830 1081 3.978876 GGCCGGCCCATATAGAATT 57.021 52.632 36.64 0.00 0.00 2.17
841 1092 4.581093 GGTAGGAATGGGCCGGCC 62.581 72.222 38.57 38.57 0.00 6.13
842 1093 4.581093 GGGTAGGAATGGGCCGGC 62.581 72.222 21.18 21.18 0.00 6.13
843 1094 2.772622 AGGGTAGGAATGGGCCGG 60.773 66.667 0.00 0.00 0.00 6.13
844 1095 2.510906 CAGGGTAGGAATGGGCCG 59.489 66.667 0.00 0.00 0.00 6.13
845 1096 2.927056 CCAGGGTAGGAATGGGCC 59.073 66.667 0.00 0.00 0.00 5.80
846 1097 2.195956 GCCAGGGTAGGAATGGGC 59.804 66.667 0.00 0.00 34.52 5.36
847 1098 2.927056 GGCCAGGGTAGGAATGGG 59.073 66.667 0.00 0.00 34.52 4.00
848 1099 1.921869 AACGGCCAGGGTAGGAATGG 61.922 60.000 2.24 0.00 37.15 3.16
849 1100 0.463833 GAACGGCCAGGGTAGGAATG 60.464 60.000 2.24 0.00 0.00 2.67
850 1101 1.912971 GAACGGCCAGGGTAGGAAT 59.087 57.895 2.24 0.00 0.00 3.01
851 1102 2.652095 CGAACGGCCAGGGTAGGAA 61.652 63.158 2.24 0.00 0.00 3.36
852 1103 3.072468 CGAACGGCCAGGGTAGGA 61.072 66.667 2.24 0.00 0.00 2.94
853 1104 2.175035 TTTCGAACGGCCAGGGTAGG 62.175 60.000 2.24 0.00 0.00 3.18
854 1105 0.107848 ATTTCGAACGGCCAGGGTAG 60.108 55.000 2.24 0.00 0.00 3.18
855 1106 0.108041 GATTTCGAACGGCCAGGGTA 60.108 55.000 2.24 0.00 0.00 3.69
886 1137 3.260483 GCATGCTGCGGTCGAGAG 61.260 66.667 11.37 0.00 31.71 3.20
1004 1255 2.426122 GAAACCAGGCAGGCTTGTGC 62.426 60.000 0.88 0.00 43.14 4.57
1005 1256 1.108727 TGAAACCAGGCAGGCTTGTG 61.109 55.000 0.88 0.00 43.14 3.33
1006 1257 0.396974 TTGAAACCAGGCAGGCTTGT 60.397 50.000 0.00 0.00 43.14 3.16
1007 1258 0.752054 TTTGAAACCAGGCAGGCTTG 59.248 50.000 0.00 0.00 43.14 4.01
1008 1259 1.494960 TTTTGAAACCAGGCAGGCTT 58.505 45.000 0.00 0.00 43.14 4.35
1009 1260 1.720781 ATTTTGAAACCAGGCAGGCT 58.279 45.000 0.00 0.00 43.14 4.58
1010 1261 2.549064 AATTTTGAAACCAGGCAGGC 57.451 45.000 0.00 0.00 43.14 4.85
1011 1262 4.070630 TGAAATTTTGAAACCAGGCAGG 57.929 40.909 0.00 0.00 45.67 4.85
1012 1263 5.544650 AGATGAAATTTTGAAACCAGGCAG 58.455 37.500 0.00 0.00 0.00 4.85
1013 1264 5.549742 AGATGAAATTTTGAAACCAGGCA 57.450 34.783 0.00 0.00 0.00 4.75
1014 1265 6.226052 AGAAGATGAAATTTTGAAACCAGGC 58.774 36.000 0.00 0.00 0.00 4.85
1015 1266 7.386025 GGAAGAAGATGAAATTTTGAAACCAGG 59.614 37.037 0.00 0.00 0.00 4.45
1016 1267 7.386025 GGGAAGAAGATGAAATTTTGAAACCAG 59.614 37.037 0.00 0.00 0.00 4.00
1017 1268 7.216494 GGGAAGAAGATGAAATTTTGAAACCA 58.784 34.615 0.00 0.00 0.00 3.67
1027 1278 4.778213 TGGATCGGGAAGAAGATGAAAT 57.222 40.909 0.00 0.00 0.00 2.17
1037 1288 3.003480 GAGTTGAAGTTGGATCGGGAAG 58.997 50.000 0.00 0.00 0.00 3.46
1059 1311 4.779733 TCCTCTCCTGGCCGGGAC 62.780 72.222 30.65 0.00 0.00 4.46
1060 1312 4.465446 CTCCTCTCCTGGCCGGGA 62.465 72.222 31.87 31.87 0.00 5.14
1061 1313 4.465446 TCTCCTCTCCTGGCCGGG 62.465 72.222 26.30 26.30 0.00 5.73
1064 1316 3.160748 GCCTCTCCTCTCCTGGCC 61.161 72.222 0.00 0.00 37.81 5.36
1076 1340 4.877619 TCTCGATCGCCGGCCTCT 62.878 66.667 23.46 5.08 39.14 3.69
1146 1426 4.379243 AAGCCCCTGACGACGCTG 62.379 66.667 0.00 0.00 0.00 5.18
1147 1427 4.379243 CAAGCCCCTGACGACGCT 62.379 66.667 0.00 0.00 0.00 5.07
1231 1511 5.111989 TGAAAACACAAGAGAGACAGACTG 58.888 41.667 0.00 0.00 0.00 3.51
1235 1515 5.987953 TCATCTGAAAACACAAGAGAGACAG 59.012 40.000 0.00 0.00 0.00 3.51
1315 1602 4.087892 TCCTTCTGCTGCCTCCGC 62.088 66.667 0.00 0.00 0.00 5.54
1316 1603 2.186384 CTCCTTCTGCTGCCTCCG 59.814 66.667 0.00 0.00 0.00 4.63
1326 1613 3.382832 CACGGTCCGCCTCCTTCT 61.383 66.667 12.28 0.00 0.00 2.85
1336 1623 1.082117 CCATGTAACGCTCACGGTCC 61.082 60.000 0.00 0.00 46.04 4.46
1348 1638 1.922447 AGCCCTGAACCATCCATGTAA 59.078 47.619 0.00 0.00 0.00 2.41
1353 1643 1.685224 GTCAGCCCTGAACCATCCA 59.315 57.895 0.00 0.00 41.85 3.41
1368 1658 1.080093 GTGATCTTGGCCGACGTCA 60.080 57.895 17.16 0.00 0.00 4.35
1396 1686 2.989253 TCCGCTTCGTCCTGCAGA 60.989 61.111 17.39 0.00 0.00 4.26
1412 1702 4.891727 ATCATGCCGGCGGTCGTC 62.892 66.667 28.82 11.33 37.11 4.20
1413 1703 4.891727 GATCATGCCGGCGGTCGT 62.892 66.667 28.82 17.87 37.11 4.34
1414 1704 4.889856 TGATCATGCCGGCGGTCG 62.890 66.667 28.82 16.04 38.88 4.79
1415 1705 2.281070 ATGATCATGCCGGCGGTC 60.281 61.111 28.82 19.83 0.00 4.79
1416 1706 2.281070 GATGATCATGCCGGCGGT 60.281 61.111 28.82 10.60 0.00 5.68
1417 1707 2.031616 AGATGATCATGCCGGCGG 59.968 61.111 24.35 24.35 0.00 6.13
1423 1713 1.021968 TGTGCAGCAGATGATCATGC 58.978 50.000 14.30 13.25 42.87 4.06
1450 1740 2.743928 GAGCAGCACTTGTCCCGG 60.744 66.667 0.00 0.00 0.00 5.73
1451 1741 1.739562 GAGAGCAGCACTTGTCCCG 60.740 63.158 0.00 0.00 0.00 5.14
1452 1742 1.376553 GGAGAGCAGCACTTGTCCC 60.377 63.158 0.00 0.00 0.00 4.46
1453 1743 0.036022 AAGGAGAGCAGCACTTGTCC 59.964 55.000 0.00 0.00 33.71 4.02
1695 1988 4.873129 CATCGCCGTCGGACTGGG 62.873 72.222 17.49 13.65 36.13 4.45
1788 2081 3.941230 ATCGATCAGATCAGGCGCAGC 62.941 57.143 10.83 0.00 46.16 5.25
1789 2082 0.038435 ATCGATCAGATCAGGCGCAG 60.038 55.000 10.83 0.00 33.45 5.18
1799 2092 5.050567 CGAATCAAGCAAATGATCGATCAGA 60.051 40.000 30.11 20.60 39.08 3.27
1800 2093 5.050567 TCGAATCAAGCAAATGATCGATCAG 60.051 40.000 30.11 19.10 39.08 2.90
1830 2123 2.256174 CAAGCATTGCAATTCAGTCGG 58.744 47.619 9.83 0.00 40.39 4.79
2047 2349 4.144727 TCGCCCTCCTCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
2080 2382 2.738521 CACGGCGTGTTCCTCTGG 60.739 66.667 30.56 2.56 0.00 3.86
2100 2402 1.748122 TACTCCTCGACCCACTCGC 60.748 63.158 0.00 0.00 42.62 5.03
2101 2403 1.703438 CGTACTCCTCGACCCACTCG 61.703 65.000 0.00 0.00 44.44 4.18
2201 2503 4.634883 CACACCTCAATCTCTTCATCTTGG 59.365 45.833 0.00 0.00 0.00 3.61
2203 2505 5.752036 TCACACCTCAATCTCTTCATCTT 57.248 39.130 0.00 0.00 0.00 2.40
2205 2507 4.332268 GCTTCACACCTCAATCTCTTCATC 59.668 45.833 0.00 0.00 0.00 2.92
2206 2508 4.019501 AGCTTCACACCTCAATCTCTTCAT 60.020 41.667 0.00 0.00 0.00 2.57
2207 2509 3.326006 AGCTTCACACCTCAATCTCTTCA 59.674 43.478 0.00 0.00 0.00 3.02
2210 2512 3.118811 GCTAGCTTCACACCTCAATCTCT 60.119 47.826 7.70 0.00 0.00 3.10
2211 2513 3.118811 AGCTAGCTTCACACCTCAATCTC 60.119 47.826 12.68 0.00 0.00 2.75
2213 2515 3.258971 AGCTAGCTTCACACCTCAATC 57.741 47.619 12.68 0.00 0.00 2.67
2214 2516 3.772025 ACTAGCTAGCTTCACACCTCAAT 59.228 43.478 24.88 0.00 0.00 2.57
2216 2518 2.808919 ACTAGCTAGCTTCACACCTCA 58.191 47.619 24.88 0.00 0.00 3.86
2218 2520 3.292460 CCTACTAGCTAGCTTCACACCT 58.708 50.000 24.88 0.00 0.00 4.00
2219 2521 3.025262 ACCTACTAGCTAGCTTCACACC 58.975 50.000 24.88 0.00 0.00 4.16
2220 2522 6.210078 CAATACCTACTAGCTAGCTTCACAC 58.790 44.000 24.88 0.00 0.00 3.82
2221 2523 5.302059 CCAATACCTACTAGCTAGCTTCACA 59.698 44.000 24.88 3.23 0.00 3.58
2222 2524 5.535406 TCCAATACCTACTAGCTAGCTTCAC 59.465 44.000 24.88 0.00 0.00 3.18
2223 2525 5.535406 GTCCAATACCTACTAGCTAGCTTCA 59.465 44.000 24.88 4.52 0.00 3.02
2224 2526 5.771165 AGTCCAATACCTACTAGCTAGCTTC 59.229 44.000 24.88 0.00 0.00 3.86
2225 2527 5.536916 CAGTCCAATACCTACTAGCTAGCTT 59.463 44.000 24.88 8.55 0.00 3.74
2226 2528 5.074115 CAGTCCAATACCTACTAGCTAGCT 58.926 45.833 23.12 23.12 0.00 3.32
2227 2529 5.071370 TCAGTCCAATACCTACTAGCTAGC 58.929 45.833 20.91 6.62 0.00 3.42
2228 2530 6.535540 TCTCAGTCCAATACCTACTAGCTAG 58.464 44.000 19.44 19.44 0.00 3.42
2229 2531 6.511017 TCTCAGTCCAATACCTACTAGCTA 57.489 41.667 0.00 0.00 0.00 3.32
2230 2532 5.390087 TCTCAGTCCAATACCTACTAGCT 57.610 43.478 0.00 0.00 0.00 3.32
2231 2533 6.265649 TCATTCTCAGTCCAATACCTACTAGC 59.734 42.308 0.00 0.00 0.00 3.42
2232 2534 7.825331 TCATTCTCAGTCCAATACCTACTAG 57.175 40.000 0.00 0.00 0.00 2.57
2233 2535 8.642432 CAATCATTCTCAGTCCAATACCTACTA 58.358 37.037 0.00 0.00 0.00 1.82
2234 2536 7.345653 TCAATCATTCTCAGTCCAATACCTACT 59.654 37.037 0.00 0.00 0.00 2.57
2235 2537 7.500992 TCAATCATTCTCAGTCCAATACCTAC 58.499 38.462 0.00 0.00 0.00 3.18
2236 2538 7.675161 TCAATCATTCTCAGTCCAATACCTA 57.325 36.000 0.00 0.00 0.00 3.08
2237 2539 6.566079 TCAATCATTCTCAGTCCAATACCT 57.434 37.500 0.00 0.00 0.00 3.08
2238 2540 7.814264 ATTCAATCATTCTCAGTCCAATACC 57.186 36.000 0.00 0.00 0.00 2.73
2250 2552 5.471556 TGCAACACCAATTCAATCATTCT 57.528 34.783 0.00 0.00 0.00 2.40
2257 2563 5.277876 GCAATGAAATGCAACACCAATTCAA 60.278 36.000 0.00 0.00 45.70 2.69
2275 2584 0.035317 ACTTCTCACGGCTGCAATGA 59.965 50.000 0.50 3.35 0.00 2.57
2369 2678 2.190313 GACATGGATGCGGGCAGA 59.810 61.111 0.00 0.00 0.00 4.26
2370 2679 2.903855 GGACATGGATGCGGGCAG 60.904 66.667 0.00 0.00 0.00 4.85
2371 2680 3.405093 GAGGACATGGATGCGGGCA 62.405 63.158 0.00 0.00 0.00 5.36
2505 2818 9.525007 GAATTAGAACGTGTACTGTATTTGTTG 57.475 33.333 0.00 0.00 0.00 3.33
2506 2819 9.485206 AGAATTAGAACGTGTACTGTATTTGTT 57.515 29.630 0.00 0.00 0.00 2.83
2507 2820 9.136952 GAGAATTAGAACGTGTACTGTATTTGT 57.863 33.333 0.00 0.00 0.00 2.83
2508 2821 9.355215 AGAGAATTAGAACGTGTACTGTATTTG 57.645 33.333 0.00 0.00 0.00 2.32
2509 2822 9.924650 AAGAGAATTAGAACGTGTACTGTATTT 57.075 29.630 0.00 0.00 0.00 1.40
2510 2823 9.924650 AAAGAGAATTAGAACGTGTACTGTATT 57.075 29.630 0.00 0.00 0.00 1.89
2511 2824 9.924650 AAAAGAGAATTAGAACGTGTACTGTAT 57.075 29.630 0.00 0.00 0.00 2.29
2512 2825 9.754382 AAAAAGAGAATTAGAACGTGTACTGTA 57.246 29.630 0.00 0.00 0.00 2.74
2549 2864 5.012354 TGTCCGGAACAAGTATTAGGTTTCT 59.988 40.000 5.23 0.00 34.03 2.52
2569 2884 1.336755 ACACAATTTCGCCAAGTGTCC 59.663 47.619 0.00 0.00 41.80 4.02
2620 2938 9.065798 GGGGAGAACTAATGTACTAAGTACTAG 57.934 40.741 0.00 0.00 39.49 2.57
2623 2941 7.014134 GGAGGGGAGAACTAATGTACTAAGTAC 59.986 44.444 0.00 0.00 39.24 2.73
2625 2943 5.898397 GGAGGGGAGAACTAATGTACTAAGT 59.102 44.000 0.00 0.00 0.00 2.24
2626 2944 5.304871 GGGAGGGGAGAACTAATGTACTAAG 59.695 48.000 0.00 0.00 0.00 2.18
2627 2945 5.214293 GGGAGGGGAGAACTAATGTACTAA 58.786 45.833 0.00 0.00 0.00 2.24
2628 2946 4.233521 TGGGAGGGGAGAACTAATGTACTA 59.766 45.833 0.00 0.00 0.00 1.82
2629 2947 3.013648 TGGGAGGGGAGAACTAATGTACT 59.986 47.826 0.00 0.00 0.00 2.73
2630 2948 3.381335 TGGGAGGGGAGAACTAATGTAC 58.619 50.000 0.00 0.00 0.00 2.90
2653 2971 0.607620 TGCACATCACCAGTCGATCA 59.392 50.000 0.00 0.00 0.00 2.92
2662 2980 4.989279 AAGAAACCATATGCACATCACC 57.011 40.909 0.00 0.00 0.00 4.02
2734 3216 6.572509 GCACTATGTCTGAAACTCTGAACCTA 60.573 42.308 0.00 0.00 0.00 3.08
2811 3298 1.400846 ATCGTAGAGCCACGTGTAGTG 59.599 52.381 15.65 0.00 46.33 2.74
2812 3299 1.400846 CATCGTAGAGCCACGTGTAGT 59.599 52.381 15.65 0.00 43.63 2.73
2821 3308 3.129792 GCATAGGCATCGTAGAGCC 57.870 57.895 0.00 0.00 46.26 4.70
2883 3375 1.331138 CTCTAGGATCGTGACGGTGTC 59.669 57.143 4.70 1.19 0.00 3.67
2889 3381 1.301423 AGACGCTCTAGGATCGTGAC 58.699 55.000 8.99 0.00 34.57 3.67
2905 3397 2.436417 TGTTGCATAGCCCTTGAAGAC 58.564 47.619 0.00 0.00 0.00 3.01
2939 3434 2.920647 GCACTAACATGTCGGCAAAACC 60.921 50.000 0.00 0.00 0.00 3.27
2952 3447 6.735678 AATATTCATGAACACGCACTAACA 57.264 33.333 11.07 0.00 0.00 2.41
2956 3451 6.252967 TGAAAATATTCATGAACACGCACT 57.747 33.333 11.07 0.00 40.59 4.40
3036 3554 3.314913 TCCATGGCGCATATAAACTGTTG 59.685 43.478 10.83 0.00 0.00 3.33
3095 3613 3.984633 GTGTTGCAGAGTCTTCAGTACTC 59.015 47.826 0.00 0.00 43.06 2.59
3114 3632 1.980232 CCATGGTGGCATGCAGTGT 60.980 57.895 21.36 0.00 0.00 3.55
3151 3669 1.732259 CATCGGTGCCTAGTGTTGTTC 59.268 52.381 0.00 0.00 0.00 3.18
3181 3699 3.322828 GCCACGGTATAGTTCCTCCATTA 59.677 47.826 0.00 0.00 0.00 1.90
3185 3703 0.031721 CGCCACGGTATAGTTCCTCC 59.968 60.000 0.00 0.00 0.00 4.30
3210 3728 8.386264 AGATTATCAATTCGGGGTATCTGAAAT 58.614 33.333 0.00 0.00 43.30 2.17
3236 3754 8.618240 TCTAAAATCCTAGGGAACTTGTATCA 57.382 34.615 9.46 0.00 43.67 2.15
3248 3766 2.708325 AGCCTGGCTCTAAAATCCTAGG 59.292 50.000 17.22 0.82 30.62 3.02
3251 3769 3.115390 TGTAGCCTGGCTCTAAAATCCT 58.885 45.455 27.16 0.00 40.44 3.24
3256 3774 1.897133 TCGTTGTAGCCTGGCTCTAAA 59.103 47.619 27.16 15.01 40.44 1.85
3257 3775 1.203994 GTCGTTGTAGCCTGGCTCTAA 59.796 52.381 27.16 18.17 40.44 2.10
3258 3776 0.815734 GTCGTTGTAGCCTGGCTCTA 59.184 55.000 27.16 12.77 40.44 2.43
3259 3777 0.900647 AGTCGTTGTAGCCTGGCTCT 60.901 55.000 27.16 11.40 40.44 4.09
3260 3778 0.037232 AAGTCGTTGTAGCCTGGCTC 60.037 55.000 27.16 16.93 40.44 4.70
3261 3779 0.320771 CAAGTCGTTGTAGCCTGGCT 60.321 55.000 26.52 26.52 43.41 4.75
3262 3780 1.298859 CCAAGTCGTTGTAGCCTGGC 61.299 60.000 11.65 11.65 30.95 4.85
3263 3781 0.320374 TCCAAGTCGTTGTAGCCTGG 59.680 55.000 0.00 0.00 30.95 4.45
3264 3782 1.272490 TCTCCAAGTCGTTGTAGCCTG 59.728 52.381 0.00 0.00 30.95 4.85
3265 3783 1.629043 TCTCCAAGTCGTTGTAGCCT 58.371 50.000 0.00 0.00 30.95 4.58
3266 3784 2.029290 TCTTCTCCAAGTCGTTGTAGCC 60.029 50.000 0.00 0.00 30.95 3.93
3267 3785 3.299340 TCTTCTCCAAGTCGTTGTAGC 57.701 47.619 0.00 0.00 30.95 3.58
3268 3786 5.122512 TCTTCTTCTCCAAGTCGTTGTAG 57.877 43.478 0.00 0.00 30.95 2.74
3269 3787 5.301045 TCTTCTTCTTCTCCAAGTCGTTGTA 59.699 40.000 0.00 0.00 30.95 2.41
3270 3788 4.099573 TCTTCTTCTTCTCCAAGTCGTTGT 59.900 41.667 0.00 0.00 30.95 3.32
3271 3789 4.621991 TCTTCTTCTTCTCCAAGTCGTTG 58.378 43.478 0.00 0.00 0.00 4.10
3272 3790 4.939052 TCTTCTTCTTCTCCAAGTCGTT 57.061 40.909 0.00 0.00 0.00 3.85
3273 3791 4.585162 TCTTCTTCTTCTTCTCCAAGTCGT 59.415 41.667 0.00 0.00 0.00 4.34
3274 3792 5.127693 TCTTCTTCTTCTTCTCCAAGTCG 57.872 43.478 0.00 0.00 0.00 4.18
3275 3793 6.589907 GTCATCTTCTTCTTCTTCTCCAAGTC 59.410 42.308 0.00 0.00 0.00 3.01
3276 3794 6.269769 AGTCATCTTCTTCTTCTTCTCCAAGT 59.730 38.462 0.00 0.00 0.00 3.16
3277 3795 6.700352 AGTCATCTTCTTCTTCTTCTCCAAG 58.300 40.000 0.00 0.00 0.00 3.61
3278 3796 6.571344 CGAGTCATCTTCTTCTTCTTCTCCAA 60.571 42.308 0.00 0.00 0.00 3.53
3279 3797 5.105957 CGAGTCATCTTCTTCTTCTTCTCCA 60.106 44.000 0.00 0.00 0.00 3.86
3280 3798 5.124776 TCGAGTCATCTTCTTCTTCTTCTCC 59.875 44.000 0.00 0.00 0.00 3.71
3281 3799 6.189677 TCGAGTCATCTTCTTCTTCTTCTC 57.810 41.667 0.00 0.00 0.00 2.87
3282 3800 6.183360 GGATCGAGTCATCTTCTTCTTCTTCT 60.183 42.308 0.00 0.00 0.00 2.85
3283 3801 5.977129 GGATCGAGTCATCTTCTTCTTCTTC 59.023 44.000 0.00 0.00 0.00 2.87
3284 3802 5.420421 TGGATCGAGTCATCTTCTTCTTCTT 59.580 40.000 0.00 0.00 0.00 2.52
3285 3803 4.952957 TGGATCGAGTCATCTTCTTCTTCT 59.047 41.667 0.00 0.00 0.00 2.85
3286 3804 5.040635 GTGGATCGAGTCATCTTCTTCTTC 58.959 45.833 0.00 0.00 0.00 2.87
3287 3805 4.439426 CGTGGATCGAGTCATCTTCTTCTT 60.439 45.833 0.00 0.00 42.86 2.52
3288 3806 3.066064 CGTGGATCGAGTCATCTTCTTCT 59.934 47.826 0.00 0.00 42.86 2.85
3289 3807 3.065510 TCGTGGATCGAGTCATCTTCTTC 59.934 47.826 0.00 0.00 44.01 2.87
3290 3808 3.017442 TCGTGGATCGAGTCATCTTCTT 58.983 45.455 0.00 0.00 44.01 2.52
3291 3809 2.644676 TCGTGGATCGAGTCATCTTCT 58.355 47.619 0.00 0.00 44.01 2.85
3302 3820 1.139989 ATAGCGCATTTCGTGGATCG 58.860 50.000 11.47 0.00 41.07 3.69
3303 3821 3.123621 CCTTATAGCGCATTTCGTGGATC 59.876 47.826 11.47 0.00 41.07 3.36
3304 3822 3.067106 CCTTATAGCGCATTTCGTGGAT 58.933 45.455 11.47 0.00 41.07 3.41
3305 3823 2.479837 CCTTATAGCGCATTTCGTGGA 58.520 47.619 11.47 0.00 41.07 4.02
3306 3824 1.531149 CCCTTATAGCGCATTTCGTGG 59.469 52.381 11.47 2.36 41.07 4.94
3307 3825 2.479837 TCCCTTATAGCGCATTTCGTG 58.520 47.619 11.47 0.00 41.07 4.35
3308 3826 2.902705 TCCCTTATAGCGCATTTCGT 57.097 45.000 11.47 0.00 41.07 3.85
3309 3827 3.058914 CCTTTCCCTTATAGCGCATTTCG 60.059 47.826 11.47 0.00 42.12 3.46
3310 3828 3.883489 ACCTTTCCCTTATAGCGCATTTC 59.117 43.478 11.47 0.00 0.00 2.17
3311 3829 3.898482 ACCTTTCCCTTATAGCGCATTT 58.102 40.909 11.47 0.00 0.00 2.32
3312 3830 3.577805 ACCTTTCCCTTATAGCGCATT 57.422 42.857 11.47 0.00 0.00 3.56
3313 3831 4.910458 ATACCTTTCCCTTATAGCGCAT 57.090 40.909 11.47 3.63 0.00 4.73
3314 3832 4.699925 AATACCTTTCCCTTATAGCGCA 57.300 40.909 11.47 0.00 0.00 6.09
3315 3833 6.092259 CACATAATACCTTTCCCTTATAGCGC 59.908 42.308 0.00 0.00 0.00 5.92
3316 3834 6.092259 GCACATAATACCTTTCCCTTATAGCG 59.908 42.308 0.00 0.00 0.00 4.26
3317 3835 6.092259 CGCACATAATACCTTTCCCTTATAGC 59.908 42.308 0.00 0.00 0.00 2.97
3318 3836 6.594159 CCGCACATAATACCTTTCCCTTATAG 59.406 42.308 0.00 0.00 0.00 1.31
3319 3837 6.043474 ACCGCACATAATACCTTTCCCTTATA 59.957 38.462 0.00 0.00 0.00 0.98
3320 3838 5.163131 ACCGCACATAATACCTTTCCCTTAT 60.163 40.000 0.00 0.00 0.00 1.73
3321 3839 4.164604 ACCGCACATAATACCTTTCCCTTA 59.835 41.667 0.00 0.00 0.00 2.69
3322 3840 3.053917 ACCGCACATAATACCTTTCCCTT 60.054 43.478 0.00 0.00 0.00 3.95
3323 3841 2.508300 ACCGCACATAATACCTTTCCCT 59.492 45.455 0.00 0.00 0.00 4.20
3324 3842 2.927028 ACCGCACATAATACCTTTCCC 58.073 47.619 0.00 0.00 0.00 3.97
3325 3843 5.818857 TCTTTACCGCACATAATACCTTTCC 59.181 40.000 0.00 0.00 0.00 3.13
3326 3844 6.913873 TCTTTACCGCACATAATACCTTTC 57.086 37.500 0.00 0.00 0.00 2.62
3327 3845 7.690952 TTTCTTTACCGCACATAATACCTTT 57.309 32.000 0.00 0.00 0.00 3.11
3328 3846 7.201785 CCATTTCTTTACCGCACATAATACCTT 60.202 37.037 0.00 0.00 0.00 3.50
3329 3847 6.262273 CCATTTCTTTACCGCACATAATACCT 59.738 38.462 0.00 0.00 0.00 3.08
3330 3848 6.038936 ACCATTTCTTTACCGCACATAATACC 59.961 38.462 0.00 0.00 0.00 2.73
3331 3849 7.023197 ACCATTTCTTTACCGCACATAATAC 57.977 36.000 0.00 0.00 0.00 1.89
3332 3850 6.824196 TGACCATTTCTTTACCGCACATAATA 59.176 34.615 0.00 0.00 0.00 0.98
3333 3851 5.650266 TGACCATTTCTTTACCGCACATAAT 59.350 36.000 0.00 0.00 0.00 1.28
3334 3852 5.004448 TGACCATTTCTTTACCGCACATAA 58.996 37.500 0.00 0.00 0.00 1.90
3335 3853 4.580868 TGACCATTTCTTTACCGCACATA 58.419 39.130 0.00 0.00 0.00 2.29
3336 3854 3.417101 TGACCATTTCTTTACCGCACAT 58.583 40.909 0.00 0.00 0.00 3.21
3337 3855 2.811431 CTGACCATTTCTTTACCGCACA 59.189 45.455 0.00 0.00 0.00 4.57
3338 3856 2.812011 ACTGACCATTTCTTTACCGCAC 59.188 45.455 0.00 0.00 0.00 5.34
3339 3857 3.134574 ACTGACCATTTCTTTACCGCA 57.865 42.857 0.00 0.00 0.00 5.69
3340 3858 5.049267 TGTTAACTGACCATTTCTTTACCGC 60.049 40.000 7.22 0.00 0.00 5.68
3341 3859 6.548441 TGTTAACTGACCATTTCTTTACCG 57.452 37.500 7.22 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.