Multiple sequence alignment - TraesCS1A01G398100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G398100 chr1A 100.000 6255 0 0 1 6255 563600215 563593961 0.000000e+00 11551.0
1 TraesCS1A01G398100 chr1A 86.694 496 54 8 759 1249 563606966 563606478 1.980000e-149 540.0
2 TraesCS1A01G398100 chr1A 86.522 460 47 6 1564 2020 563606196 563605749 5.630000e-135 492.0
3 TraesCS1A01G398100 chr1A 84.222 469 52 16 4069 4524 563605085 563604626 2.680000e-118 436.0
4 TraesCS1A01G398100 chr1A 88.926 298 26 2 2040 2337 563605669 563605379 1.660000e-95 361.0
5 TraesCS1A01G398100 chr1A 92.667 150 9 2 1 148 511603788 511603937 1.370000e-51 215.0
6 TraesCS1A01G398100 chr1A 86.813 182 12 7 2427 2607 563605353 563605183 6.400000e-45 193.0
7 TraesCS1A01G398100 chr1A 83.420 193 32 0 262 454 352181046 352181238 4.980000e-41 180.0
8 TraesCS1A01G398100 chr1A 85.915 71 7 3 3802 3870 518801426 518801495 8.700000e-09 73.1
9 TraesCS1A01G398100 chr1A 97.297 37 1 0 3834 3870 456447354 456447318 5.230000e-06 63.9
10 TraesCS1A01G398100 chr1A 84.127 63 5 5 3810 3869 515622329 515622269 8.760000e-04 56.5
11 TraesCS1A01G398100 chr1D 94.026 1791 75 17 2138 3909 469986703 469984926 0.000000e+00 2686.0
12 TraesCS1A01G398100 chr1D 88.622 2206 195 37 3965 6132 469984986 469982799 0.000000e+00 2632.0
13 TraesCS1A01G398100 chr1D 89.730 1928 122 30 149 2020 470032031 470030124 0.000000e+00 2394.0
14 TraesCS1A01G398100 chr1D 85.730 911 100 20 4949 5847 168248186 168249078 0.000000e+00 935.0
15 TraesCS1A01G398100 chr1D 85.297 891 114 15 4964 5847 165843727 165844607 0.000000e+00 904.0
16 TraesCS1A01G398100 chr1D 87.662 462 42 4 1562 2020 470034388 470033939 2.000000e-144 523.0
17 TraesCS1A01G398100 chr1D 85.629 501 56 8 759 1249 470035155 470034661 4.320000e-141 512.0
18 TraesCS1A01G398100 chr1D 83.863 409 52 12 5849 6251 211630016 211630416 1.650000e-100 377.0
19 TraesCS1A01G398100 chr1D 82.651 415 59 11 5849 6252 215066625 215067037 7.710000e-94 355.0
20 TraesCS1A01G398100 chr1D 85.623 313 30 4 2025 2337 470033873 470033576 1.310000e-81 315.0
21 TraesCS1A01G398100 chr1D 96.117 103 4 0 2038 2140 469987105 469987003 1.080000e-37 169.0
22 TraesCS1A01G398100 chr1D 87.097 93 12 0 583 675 461421398 461421306 8.580000e-19 106.0
23 TraesCS1A01G398100 chr1D 88.372 86 10 0 590 675 323952147 323952232 3.080000e-18 104.0
24 TraesCS1A01G398100 chr1D 85.714 98 13 1 588 685 30100524 30100428 1.110000e-17 102.0
25 TraesCS1A01G398100 chr1D 84.466 103 16 0 588 690 475718502 475718400 1.110000e-17 102.0
26 TraesCS1A01G398100 chr1D 80.000 130 19 6 546 674 469329951 469330074 8.640000e-14 89.8
27 TraesCS1A01G398100 chr1B 87.800 1582 118 36 456 2007 652048473 652046937 0.000000e+00 1783.0
28 TraesCS1A01G398100 chr1B 91.316 1094 65 10 149 1241 652295778 652294714 0.000000e+00 1467.0
29 TraesCS1A01G398100 chr1B 87.138 1174 87 21 2351 3494 651912525 651911386 0.000000e+00 1273.0
30 TraesCS1A01G398100 chr1B 88.866 952 55 15 1098 2020 651913806 651912877 0.000000e+00 1123.0
31 TraesCS1A01G398100 chr1B 82.037 913 121 25 4949 5847 259709149 259710032 0.000000e+00 737.0
32 TraesCS1A01G398100 chr1B 85.913 504 52 10 759 1249 652298980 652298483 2.580000e-143 520.0
33 TraesCS1A01G398100 chr1B 86.492 459 50 5 1562 2020 652298204 652297758 1.570000e-135 494.0
34 TraesCS1A01G398100 chr1B 85.249 461 52 12 4074 4524 652297095 652296641 1.590000e-125 460.0
35 TraesCS1A01G398100 chr1B 86.318 402 44 6 2980 3381 651957021 651956631 1.610000e-115 427.0
36 TraesCS1A01G398100 chr1B 84.878 410 50 9 5849 6251 679234015 679234419 2.720000e-108 403.0
37 TraesCS1A01G398100 chr1B 88.000 300 29 2 2038 2337 652297683 652297391 1.290000e-91 348.0
38 TraesCS1A01G398100 chr1B 86.319 307 21 9 2414 2718 652046153 652045866 1.310000e-81 315.0
39 TraesCS1A01G398100 chr1B 81.908 304 37 8 149 437 150578110 150577810 2.250000e-59 241.0
40 TraesCS1A01G398100 chr1B 90.426 94 6 2 4428 4518 652050509 652050416 3.060000e-23 121.0
41 TraesCS1A01G398100 chr1B 87.755 98 12 0 588 685 666933641 666933544 1.420000e-21 115.0
42 TraesCS1A01G398100 chr1B 79.433 141 22 7 546 685 544249848 544249714 6.680000e-15 93.5
43 TraesCS1A01G398100 chr1B 78.912 147 18 8 3796 3935 5517130 5516990 3.110000e-13 87.9
44 TraesCS1A01G398100 chr1B 83.529 85 10 3 4428 4510 506133699 506133781 6.720000e-10 76.8
45 TraesCS1A01G398100 chr2A 87.706 911 95 17 4949 5847 227800198 227799293 0.000000e+00 1046.0
46 TraesCS1A01G398100 chr2A 81.757 148 17 9 545 691 26763673 26763535 1.420000e-21 115.0
47 TraesCS1A01G398100 chr2A 78.061 196 34 8 3742 3931 168985445 168985253 1.420000e-21 115.0
48 TraesCS1A01G398100 chr2A 85.577 104 15 0 588 691 78849723 78849620 6.630000e-20 110.0
49 TraesCS1A01G398100 chrUn 86.800 947 92 19 4949 5868 151915259 151914319 0.000000e+00 1026.0
50 TraesCS1A01G398100 chrUn 85.366 410 53 7 5849 6252 223001936 223002344 9.700000e-113 418.0
51 TraesCS1A01G398100 chrUn 85.086 409 55 6 5849 6252 92407197 92406790 4.510000e-111 412.0
52 TraesCS1A01G398100 chrUn 85.086 409 55 6 5849 6252 380756373 380756780 4.510000e-111 412.0
53 TraesCS1A01G398100 chrUn 82.927 410 63 7 5849 6252 17329817 17329409 4.610000e-96 363.0
54 TraesCS1A01G398100 chrUn 82.353 408 59 11 5849 6249 229736084 229736485 6.000000e-90 342.0
55 TraesCS1A01G398100 chrUn 82.353 408 59 11 5849 6249 233974415 233974014 6.000000e-90 342.0
56 TraesCS1A01G398100 chrUn 82.353 408 59 11 5849 6249 236160287 236159886 6.000000e-90 342.0
57 TraesCS1A01G398100 chrUn 87.097 217 24 3 4735 4949 91867109 91866895 6.260000e-60 243.0
58 TraesCS1A01G398100 chrUn 87.143 210 24 3 5849 6056 464286973 464287181 1.050000e-57 235.0
59 TraesCS1A01G398100 chrUn 87.500 88 11 0 598 685 31873198 31873111 1.110000e-17 102.0
60 TraesCS1A01G398100 chrUn 83.673 98 16 0 588 685 409687666 409687569 6.680000e-15 93.5
61 TraesCS1A01G398100 chrUn 82.653 98 17 0 588 685 409689108 409689011 3.110000e-13 87.9
62 TraesCS1A01G398100 chrUn 87.037 54 7 0 638 691 323230478 323230425 1.880000e-05 62.1
63 TraesCS1A01G398100 chrUn 87.037 54 7 0 638 691 328695104 328695051 1.880000e-05 62.1
64 TraesCS1A01G398100 chrUn 88.235 51 6 0 635 685 475479811 475479861 1.880000e-05 62.1
65 TraesCS1A01G398100 chr7A 87.013 924 89 19 4948 5847 341357786 341358702 0.000000e+00 1013.0
66 TraesCS1A01G398100 chr7A 82.704 318 44 6 153 461 215545053 215544738 7.990000e-69 272.0
67 TraesCS1A01G398100 chr7A 96.644 149 4 1 1 148 47904544 47904396 4.840000e-61 246.0
68 TraesCS1A01G398100 chr7A 84.694 196 25 5 262 454 23390160 23389967 2.300000e-44 191.0
69 TraesCS1A01G398100 chr7A 83.486 109 16 2 4436 4542 122028285 122028177 3.990000e-17 100.0
70 TraesCS1A01G398100 chr5A 85.426 892 113 13 4947 5827 218745419 218744534 0.000000e+00 911.0
71 TraesCS1A01G398100 chr5A 87.215 219 22 6 4735 4949 54458807 54458591 1.740000e-60 244.0
72 TraesCS1A01G398100 chr5A 96.599 147 4 1 2 147 112109425 112109279 6.260000e-60 243.0
73 TraesCS1A01G398100 chr5A 87.037 216 27 1 4735 4949 482628572 482628357 6.260000e-60 243.0
74 TraesCS1A01G398100 chr5A 98.305 118 2 0 4 121 580296127 580296010 2.290000e-49 207.0
75 TraesCS1A01G398100 chr5A 76.042 384 56 27 3654 4025 691933266 691933625 3.880000e-37 167.0
76 TraesCS1A01G398100 chr5A 88.660 97 11 0 588 684 431570698 431570794 1.100000e-22 119.0
77 TraesCS1A01G398100 chr6D 84.598 909 119 16 4948 5847 206188861 206187965 0.000000e+00 883.0
78 TraesCS1A01G398100 chr6D 85.213 399 51 8 5860 6252 341997746 341998142 2.720000e-108 403.0
79 TraesCS1A01G398100 chr6D 82.885 409 63 7 5849 6251 243625877 243626284 1.660000e-95 361.0
80 TraesCS1A01G398100 chr6D 85.437 103 14 1 583 685 128093014 128092913 8.580000e-19 106.0
81 TraesCS1A01G398100 chr6D 86.316 95 11 1 588 682 463856986 463857078 1.110000e-17 102.0
82 TraesCS1A01G398100 chr6D 76.667 150 26 8 4449 4591 434165793 434165940 2.420000e-09 75.0
83 TraesCS1A01G398100 chr6D 80.488 82 11 5 3792 3870 383560697 383560618 2.440000e-04 58.4
84 TraesCS1A01G398100 chr5D 82.751 916 135 18 4949 5850 168924254 168923348 0.000000e+00 795.0
85 TraesCS1A01G398100 chr5D 85.969 392 49 6 5849 6235 64018292 64017902 1.250000e-111 414.0
86 TraesCS1A01G398100 chr5D 86.758 219 25 3 4735 4949 520768128 520768346 2.250000e-59 241.0
87 TraesCS1A01G398100 chr5D 84.259 108 15 2 588 695 326457580 326457685 3.080000e-18 104.0
88 TraesCS1A01G398100 chr5D 86.538 52 5 2 3821 3870 84387857 84387908 8.760000e-04 56.5
89 TraesCS1A01G398100 chr7D 86.585 410 46 9 5849 6252 602081043 602080637 1.600000e-120 444.0
90 TraesCS1A01G398100 chr7D 86.486 407 48 7 5849 6249 91778961 91779366 2.070000e-119 440.0
91 TraesCS1A01G398100 chr7D 86.029 408 48 8 5849 6250 91748629 91749033 4.480000e-116 429.0
92 TraesCS1A01G398100 chr7D 85.122 410 55 6 5849 6252 80797516 80797925 1.250000e-111 414.0
93 TraesCS1A01G398100 chr7D 89.151 212 21 2 4735 4945 454676855 454676645 4.810000e-66 263.0
94 TraesCS1A01G398100 chr7D 83.582 67 6 5 4201 4266 27818864 27818802 2.440000e-04 58.4
95 TraesCS1A01G398100 chr7D 81.818 77 7 5 4006 4077 182825397 182825471 2.440000e-04 58.4
96 TraesCS1A01G398100 chr3A 85.158 411 53 8 5849 6252 19767500 19767909 1.250000e-111 414.0
97 TraesCS1A01G398100 chr3A 82.857 140 20 3 3821 3956 108736243 108736104 8.520000e-24 122.0
98 TraesCS1A01G398100 chr3D 85.122 410 54 7 5849 6252 29493589 29493997 4.510000e-111 412.0
99 TraesCS1A01G398100 chr3D 85.122 410 54 7 5849 6252 29528518 29528926 4.510000e-111 412.0
100 TraesCS1A01G398100 chr3D 85.122 410 52 9 5849 6250 599269701 599270109 1.620000e-110 411.0
101 TraesCS1A01G398100 chr3D 84.634 410 56 7 5849 6252 29565458 29565866 9.770000e-108 401.0
102 TraesCS1A01G398100 chr3D 88.732 213 21 3 4735 4945 591097553 591097764 2.240000e-64 257.0
103 TraesCS1A01G398100 chr3D 95.302 149 6 1 1 148 1307663 1307515 1.050000e-57 235.0
104 TraesCS1A01G398100 chr3D 80.201 298 42 12 166 461 463671185 463671467 2.290000e-49 207.0
105 TraesCS1A01G398100 chr3D 81.988 161 19 7 233 390 463399145 463399298 1.830000e-25 128.0
106 TraesCS1A01G398100 chr3D 88.776 98 11 0 588 685 375693888 375693985 3.060000e-23 121.0
107 TraesCS1A01G398100 chr3D 84.483 116 14 3 4428 4541 484826815 484826928 1.840000e-20 111.0
108 TraesCS1A01G398100 chr3D 83.486 109 16 2 589 697 19010527 19010633 3.990000e-17 100.0
109 TraesCS1A01G398100 chr3D 75.785 223 36 15 3810 4023 427036627 427036840 5.160000e-16 97.1
110 TraesCS1A01G398100 chr3D 80.769 130 18 6 546 674 140762306 140762429 1.860000e-15 95.3
111 TraesCS1A01G398100 chr4D 82.759 406 62 8 5849 6249 466254525 466254927 7.710000e-94 355.0
112 TraesCS1A01G398100 chr4D 83.333 390 54 9 5849 6232 50755559 50755943 3.590000e-92 350.0
113 TraesCS1A01G398100 chr4D 79.618 157 27 5 4449 4602 325074811 325074965 2.380000e-19 108.0
114 TraesCS1A01G398100 chr4D 83.178 107 16 2 588 693 6170620 6170725 5.160000e-16 97.1
115 TraesCS1A01G398100 chr4D 83.673 98 16 0 588 685 326382507 326382604 6.680000e-15 93.5
116 TraesCS1A01G398100 chr4D 85.227 88 12 1 588 674 450505821 450505908 8.640000e-14 89.8
117 TraesCS1A01G398100 chr4D 71.795 429 83 31 3800 4215 397150289 397150692 3.110000e-13 87.9
118 TraesCS1A01G398100 chr4D 79.231 130 20 6 546 674 245284731 245284608 4.020000e-12 84.2
119 TraesCS1A01G398100 chr4D 79.231 130 20 6 546 674 413889876 413889999 4.020000e-12 84.2
120 TraesCS1A01G398100 chr4D 91.525 59 5 0 396 454 334122399 334122457 1.450000e-11 82.4
121 TraesCS1A01G398100 chr4D 82.955 88 14 1 588 674 76970553 76970640 1.870000e-10 78.7
122 TraesCS1A01G398100 chr4D 80.198 101 18 2 588 686 347844546 347844646 2.420000e-09 75.0
123 TraesCS1A01G398100 chr4D 77.143 140 24 7 549 686 426183291 426183424 2.420000e-09 75.0
124 TraesCS1A01G398100 chr4D 86.538 52 5 1 3821 3870 1674568 1674619 8.760000e-04 56.5
125 TraesCS1A01G398100 chr4D 92.683 41 0 3 3840 3877 37831165 37831125 8.760000e-04 56.5
126 TraesCS1A01G398100 chr4B 82.704 318 49 5 148 461 47658327 47658642 1.720000e-70 278.0
127 TraesCS1A01G398100 chr4B 94.595 148 6 2 2 147 479416776 479416923 1.750000e-55 228.0
128 TraesCS1A01G398100 chr4B 92.715 151 8 3 1 148 115946550 115946400 1.370000e-51 215.0
129 TraesCS1A01G398100 chr4B 77.103 214 34 13 3815 4023 1856857 1856654 6.630000e-20 110.0
130 TraesCS1A01G398100 chr4B 82.692 104 14 4 3816 3916 665380630 665380528 8.640000e-14 89.8
131 TraesCS1A01G398100 chr6A 98.000 150 2 1 1 149 6317123 6316974 6.220000e-65 259.0
132 TraesCS1A01G398100 chr6A 81.789 313 45 8 151 454 502852175 502851866 1.040000e-62 252.0
133 TraesCS1A01G398100 chr6A 79.661 236 34 11 238 461 134556087 134555854 2.330000e-34 158.0
134 TraesCS1A01G398100 chr6A 74.534 322 40 29 3636 3920 30833657 30833973 1.110000e-17 102.0
135 TraesCS1A01G398100 chr6A 83.036 112 16 3 4426 4535 31878378 31878488 1.440000e-16 99.0
136 TraesCS1A01G398100 chr6A 93.333 45 3 0 3829 3873 15634275 15634319 4.050000e-07 67.6
137 TraesCS1A01G398100 chr6A 81.928 83 10 5 3791 3870 525798103 525798023 1.460000e-06 65.8
138 TraesCS1A01G398100 chr6A 95.000 40 2 0 166 205 134593002 134592963 5.230000e-06 63.9
139 TraesCS1A01G398100 chr6B 88.679 212 22 2 4740 4949 43061212 43061423 2.240000e-64 257.0
140 TraesCS1A01G398100 chr6B 78.750 320 48 11 149 461 207767278 207766972 4.950000e-46 196.0
141 TraesCS1A01G398100 chr6B 74.924 327 58 19 3685 4001 349466397 349466085 1.830000e-25 128.0
142 TraesCS1A01G398100 chr2B 87.736 212 23 3 4735 4945 120246145 120245936 1.740000e-60 244.0
143 TraesCS1A01G398100 chr2B 86.735 98 13 0 588 685 41136222 41136125 6.630000e-20 110.0
144 TraesCS1A01G398100 chr2B 80.682 88 12 5 3842 3926 212114112 212114027 5.230000e-06 63.9
145 TraesCS1A01G398100 chr3B 96.599 147 4 1 1 147 662971133 662971278 6.260000e-60 243.0
146 TraesCS1A01G398100 chr5B 80.312 320 41 16 151 454 663094611 663094924 8.160000e-54 222.0
147 TraesCS1A01G398100 chr5B 80.645 186 27 8 4144 4324 429066255 429066436 1.090000e-27 135.0
148 TraesCS1A01G398100 chr5B 87.736 106 13 0 356 461 612332898 612332793 2.370000e-24 124.0
149 TraesCS1A01G398100 chr5B 87.629 97 10 2 591 685 75536864 75536768 1.840000e-20 111.0
150 TraesCS1A01G398100 chr5B 85.714 98 14 0 588 685 407219452 407219549 3.080000e-18 104.0
151 TraesCS1A01G398100 chr5B 86.154 65 9 0 1290 1354 294559908 294559972 3.130000e-08 71.3
152 TraesCS1A01G398100 chr7B 80.156 257 41 5 148 396 465189173 465189427 3.850000e-42 183.0
153 TraesCS1A01G398100 chr7B 85.714 105 15 0 588 692 712840091 712840195 1.840000e-20 111.0
154 TraesCS1A01G398100 chr2D 73.054 334 60 22 3821 4149 106638594 106638286 2.400000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G398100 chr1A 563593961 563600215 6254 True 11551.000000 11551 100.000000 1 6255 1 chr1A.!!$R3 6254
1 TraesCS1A01G398100 chr1A 563604626 563606966 2340 True 404.400000 540 86.635400 759 4524 5 chr1A.!!$R4 3765
2 TraesCS1A01G398100 chr1D 469982799 469987105 4306 True 1829.000000 2686 92.921667 2038 6132 3 chr1D.!!$R4 4094
3 TraesCS1A01G398100 chr1D 470030124 470035155 5031 True 936.000000 2394 87.161000 149 2337 4 chr1D.!!$R5 2188
4 TraesCS1A01G398100 chr1D 168248186 168249078 892 False 935.000000 935 85.730000 4949 5847 1 chr1D.!!$F2 898
5 TraesCS1A01G398100 chr1D 165843727 165844607 880 False 904.000000 904 85.297000 4964 5847 1 chr1D.!!$F1 883
6 TraesCS1A01G398100 chr1B 651911386 651913806 2420 True 1198.000000 1273 88.002000 1098 3494 2 chr1B.!!$R6 2396
7 TraesCS1A01G398100 chr1B 652045866 652050509 4643 True 739.666667 1783 88.181667 456 4518 3 chr1B.!!$R7 4062
8 TraesCS1A01G398100 chr1B 259709149 259710032 883 False 737.000000 737 82.037000 4949 5847 1 chr1B.!!$F1 898
9 TraesCS1A01G398100 chr1B 652294714 652298980 4266 True 657.800000 1467 87.394000 149 4524 5 chr1B.!!$R8 4375
10 TraesCS1A01G398100 chr2A 227799293 227800198 905 True 1046.000000 1046 87.706000 4949 5847 1 chr2A.!!$R4 898
11 TraesCS1A01G398100 chrUn 151914319 151915259 940 True 1026.000000 1026 86.800000 4949 5868 1 chrUn.!!$R5 919
12 TraesCS1A01G398100 chr7A 341357786 341358702 916 False 1013.000000 1013 87.013000 4948 5847 1 chr7A.!!$F1 899
13 TraesCS1A01G398100 chr5A 218744534 218745419 885 True 911.000000 911 85.426000 4947 5827 1 chr5A.!!$R3 880
14 TraesCS1A01G398100 chr6D 206187965 206188861 896 True 883.000000 883 84.598000 4948 5847 1 chr6D.!!$R2 899
15 TraesCS1A01G398100 chr5D 168923348 168924254 906 True 795.000000 795 82.751000 4949 5850 1 chr5D.!!$R2 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.169009 CGTGCTTTGGCTAAGGCTTC 59.831 55.0 17.51 9.81 39.43 3.86 F
77 78 0.402504 ACGGCACCTTTGGTTATCCA 59.597 50.0 0.00 0.00 42.66 3.41 F
1080 2690 0.111061 TCCTCAAGCAGGTGCAACAT 59.889 50.0 3.64 0.00 43.95 2.71 F
2529 5167 0.171007 ACGCTAGCGCTTAAACGGTA 59.829 50.0 35.63 9.55 44.38 4.02 F
3370 6034 0.610174 CTAGGCCTGACAAGTGAGCA 59.390 55.0 17.99 0.00 0.00 4.26 F
4707 7682 1.048601 GGCCCATATCGTCTCCTTCA 58.951 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1079 2689 0.179045 GCAATCCACGCCCTCTACAT 60.179 55.000 0.00 0.0 0.00 2.29 R
1747 3556 0.451783 GTTGATAGCCGGTGCCAAAG 59.548 55.000 1.90 0.0 38.69 2.77 R
3057 5718 0.270699 TATGGTAGGCACCCATCCCT 59.729 55.000 10.76 0.0 45.11 4.20 R
3585 6255 1.264749 TAGCGAATGAGTGGGCAGGT 61.265 55.000 0.00 0.0 0.00 4.00 R
4786 7762 0.397254 GAAGATCCGAGGTCCTCCCA 60.397 60.000 13.54 0.0 34.66 4.37 R
5999 11045 1.280710 TGAGCCGCCCATCTAAAAAGA 59.719 47.619 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.479619 GAGAATGCAATTTTGAAGCTCGT 58.520 39.130 0.00 0.00 36.07 4.18
23 24 4.232221 AGAATGCAATTTTGAAGCTCGTG 58.768 39.130 0.00 0.00 36.07 4.35
24 25 1.769733 TGCAATTTTGAAGCTCGTGC 58.230 45.000 0.07 0.07 40.05 5.34
35 36 1.796796 GCTCGTGCTTTGGCTAAGG 59.203 57.895 10.59 0.00 39.59 2.69
36 37 1.796796 CTCGTGCTTTGGCTAAGGC 59.203 57.895 10.10 10.10 39.17 4.35
37 38 0.674895 CTCGTGCTTTGGCTAAGGCT 60.675 55.000 17.51 0.00 39.43 4.58
39 40 0.169009 CGTGCTTTGGCTAAGGCTTC 59.831 55.000 17.51 9.81 39.43 3.86
40 41 0.169009 GTGCTTTGGCTAAGGCTTCG 59.831 55.000 17.51 0.00 39.43 3.79
41 42 0.960364 TGCTTTGGCTAAGGCTTCGG 60.960 55.000 17.51 0.00 39.43 4.30
42 43 1.803289 CTTTGGCTAAGGCTTCGGC 59.197 57.895 16.99 16.99 38.73 5.54
52 53 2.821810 GCTTCGGCCTCTCTTGCC 60.822 66.667 0.00 0.00 45.70 4.52
59 60 4.821589 CCTCTCTTGCCGCGGGAC 62.822 72.222 29.38 12.09 0.00 4.46
72 73 2.203437 GGGACGGCACCTTTGGTT 60.203 61.111 0.00 0.00 31.02 3.67
75 76 1.092348 GGACGGCACCTTTGGTTATC 58.908 55.000 0.00 0.00 31.02 1.75
76 77 1.092348 GACGGCACCTTTGGTTATCC 58.908 55.000 0.00 0.00 31.02 2.59
77 78 0.402504 ACGGCACCTTTGGTTATCCA 59.597 50.000 0.00 0.00 42.66 3.41
78 79 0.808755 CGGCACCTTTGGTTATCCAC 59.191 55.000 0.00 0.00 44.22 4.02
79 80 1.613255 CGGCACCTTTGGTTATCCACT 60.613 52.381 0.00 0.00 44.22 4.00
80 81 2.525368 GGCACCTTTGGTTATCCACTT 58.475 47.619 0.00 0.00 44.22 3.16
81 82 2.897326 GGCACCTTTGGTTATCCACTTT 59.103 45.455 0.00 0.00 44.22 2.66
82 83 3.323691 GGCACCTTTGGTTATCCACTTTT 59.676 43.478 0.00 0.00 44.22 2.27
83 84 4.556233 GCACCTTTGGTTATCCACTTTTC 58.444 43.478 0.00 0.00 44.22 2.29
84 85 4.560716 GCACCTTTGGTTATCCACTTTTCC 60.561 45.833 0.00 0.00 44.22 3.13
86 87 6.007703 CACCTTTGGTTATCCACTTTTCCTA 58.992 40.000 0.00 0.00 44.22 2.94
87 88 6.008331 ACCTTTGGTTATCCACTTTTCCTAC 58.992 40.000 0.00 0.00 44.22 3.18
88 89 6.183361 ACCTTTGGTTATCCACTTTTCCTACT 60.183 38.462 0.00 0.00 44.22 2.57
89 90 6.151144 CCTTTGGTTATCCACTTTTCCTACTG 59.849 42.308 0.00 0.00 44.22 2.74
90 91 5.836024 TGGTTATCCACTTTTCCTACTGT 57.164 39.130 0.00 0.00 39.03 3.55
92 93 6.607019 TGGTTATCCACTTTTCCTACTGTTT 58.393 36.000 0.00 0.00 39.03 2.83
93 94 7.064229 TGGTTATCCACTTTTCCTACTGTTTT 58.936 34.615 0.00 0.00 39.03 2.43
95 96 9.239551 GGTTATCCACTTTTCCTACTGTTTTAT 57.760 33.333 0.00 0.00 0.00 1.40
100 101 9.629878 TCCACTTTTCCTACTGTTTTATTTGTA 57.370 29.630 0.00 0.00 0.00 2.41
101 102 9.673454 CCACTTTTCCTACTGTTTTATTTGTAC 57.327 33.333 0.00 0.00 0.00 2.90
102 103 9.673454 CACTTTTCCTACTGTTTTATTTGTACC 57.327 33.333 0.00 0.00 0.00 3.34
107 108 8.749026 TCCTACTGTTTTATTTGTACCAAACA 57.251 30.769 0.00 0.00 36.91 2.83
108 109 9.357161 TCCTACTGTTTTATTTGTACCAAACAT 57.643 29.630 0.00 0.00 38.21 2.71
109 110 9.620660 CCTACTGTTTTATTTGTACCAAACATC 57.379 33.333 0.00 0.00 38.21 3.06
116 117 9.703892 TTTTATTTGTACCAAACATCATTGAGG 57.296 29.630 0.00 0.00 38.10 3.86
118 119 6.723298 TTTGTACCAAACATCATTGAGGTT 57.277 33.333 10.72 10.72 38.20 3.50
119 120 6.723298 TTGTACCAAACATCATTGAGGTTT 57.277 33.333 20.41 20.41 45.31 3.27
120 121 7.825331 TTGTACCAAACATCATTGAGGTTTA 57.175 32.000 24.16 10.50 43.15 2.01
122 123 8.239038 TGTACCAAACATCATTGAGGTTTAAA 57.761 30.769 24.16 12.75 43.15 1.52
123 124 8.865090 TGTACCAAACATCATTGAGGTTTAAAT 58.135 29.630 24.16 16.26 43.15 1.40
131 132 9.912634 ACATCATTGAGGTTTAAATAAAGTGTG 57.087 29.630 0.00 0.00 0.00 3.82
132 133 9.357652 CATCATTGAGGTTTAAATAAAGTGTGG 57.642 33.333 0.00 0.00 0.00 4.17
133 134 8.472007 TCATTGAGGTTTAAATAAAGTGTGGT 57.528 30.769 0.00 0.00 0.00 4.16
134 135 8.356657 TCATTGAGGTTTAAATAAAGTGTGGTG 58.643 33.333 0.00 0.00 0.00 4.17
135 136 7.883391 TTGAGGTTTAAATAAAGTGTGGTGA 57.117 32.000 0.00 0.00 0.00 4.02
136 137 7.266922 TGAGGTTTAAATAAAGTGTGGTGAC 57.733 36.000 0.00 0.00 0.00 3.67
137 138 6.263617 TGAGGTTTAAATAAAGTGTGGTGACC 59.736 38.462 0.00 0.00 0.00 4.02
138 139 5.537295 AGGTTTAAATAAAGTGTGGTGACCC 59.463 40.000 0.00 0.00 0.00 4.46
139 140 5.537295 GGTTTAAATAAAGTGTGGTGACCCT 59.463 40.000 0.00 0.00 0.00 4.34
140 141 6.716173 GGTTTAAATAAAGTGTGGTGACCCTA 59.284 38.462 0.00 0.00 0.00 3.53
141 142 7.231115 GGTTTAAATAAAGTGTGGTGACCCTAA 59.769 37.037 0.00 0.00 0.00 2.69
142 143 8.631797 GTTTAAATAAAGTGTGGTGACCCTAAA 58.368 33.333 0.00 0.00 0.00 1.85
181 182 9.696917 ATCCAAGAACAATTAACAATTTCTGAC 57.303 29.630 0.00 0.00 0.00 3.51
182 183 8.912988 TCCAAGAACAATTAACAATTTCTGACT 58.087 29.630 0.00 0.00 0.00 3.41
183 184 8.971321 CCAAGAACAATTAACAATTTCTGACTG 58.029 33.333 0.00 0.00 0.00 3.51
184 185 8.971321 CAAGAACAATTAACAATTTCTGACTGG 58.029 33.333 0.00 0.00 0.00 4.00
185 186 7.147976 AGAACAATTAACAATTTCTGACTGGC 58.852 34.615 0.00 0.00 0.00 4.85
186 187 6.403866 ACAATTAACAATTTCTGACTGGCA 57.596 33.333 0.00 0.00 0.00 4.92
188 189 7.271511 ACAATTAACAATTTCTGACTGGCAAA 58.728 30.769 0.00 0.00 0.00 3.68
189 190 7.768120 ACAATTAACAATTTCTGACTGGCAAAA 59.232 29.630 0.00 0.00 0.00 2.44
190 191 8.610896 CAATTAACAATTTCTGACTGGCAAAAA 58.389 29.630 0.00 0.00 0.00 1.94
191 192 8.907222 ATTAACAATTTCTGACTGGCAAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
192 193 9.995003 ATTAACAATTTCTGACTGGCAAAAATA 57.005 25.926 0.00 0.00 0.00 1.40
193 194 9.823647 TTAACAATTTCTGACTGGCAAAAATAA 57.176 25.926 0.00 0.00 0.00 1.40
194 195 7.951530 ACAATTTCTGACTGGCAAAAATAAG 57.048 32.000 0.00 0.00 0.00 1.73
195 196 6.424812 ACAATTTCTGACTGGCAAAAATAAGC 59.575 34.615 0.00 0.00 0.00 3.09
198 199 5.376854 TCTGACTGGCAAAAATAAGCTTC 57.623 39.130 0.00 0.00 0.00 3.86
199 200 4.083324 TCTGACTGGCAAAAATAAGCTTCG 60.083 41.667 0.00 0.00 0.00 3.79
201 202 2.262211 CTGGCAAAAATAAGCTTCGGC 58.738 47.619 0.00 0.00 42.17 5.54
227 228 4.307908 GCAACCCGTGACGTGCAC 62.308 66.667 13.12 6.82 44.21 4.57
250 251 3.470567 GTGACGACGCGAGGCTTG 61.471 66.667 15.93 0.00 36.51 4.01
255 256 3.184683 GACGCGAGGCTTGCAGAG 61.185 66.667 25.63 12.48 34.96 3.35
256 257 4.749310 ACGCGAGGCTTGCAGAGG 62.749 66.667 25.63 12.13 0.00 3.69
257 258 4.441695 CGCGAGGCTTGCAGAGGA 62.442 66.667 25.63 0.00 0.00 3.71
258 259 2.511145 GCGAGGCTTGCAGAGGAG 60.511 66.667 21.86 0.00 0.00 3.69
259 260 2.186384 CGAGGCTTGCAGAGGAGG 59.814 66.667 0.00 0.00 0.00 4.30
260 261 2.588989 GAGGCTTGCAGAGGAGGG 59.411 66.667 0.00 0.00 0.00 4.30
261 262 3.013932 AGGCTTGCAGAGGAGGGG 61.014 66.667 0.00 0.00 0.00 4.79
262 263 4.120755 GGCTTGCAGAGGAGGGGG 62.121 72.222 0.00 0.00 0.00 5.40
263 264 3.011517 GCTTGCAGAGGAGGGGGA 61.012 66.667 0.00 0.00 0.00 4.81
264 265 3.041469 GCTTGCAGAGGAGGGGGAG 62.041 68.421 0.00 0.00 0.00 4.30
265 266 2.285668 TTGCAGAGGAGGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
267 268 2.445654 GCAGAGGAGGGGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
268 269 3.114390 CAGAGGAGGGGGAGGAGT 58.886 66.667 0.00 0.00 0.00 3.85
270 271 2.766229 GAGGAGGGGGAGGAGTGC 60.766 72.222 0.00 0.00 0.00 4.40
277 278 3.755628 GGGAGGAGTGCGCGTGTA 61.756 66.667 8.43 0.00 0.00 2.90
280 281 1.372499 GAGGAGTGCGCGTGTACAA 60.372 57.895 19.35 0.00 32.48 2.41
281 282 1.615107 GAGGAGTGCGCGTGTACAAC 61.615 60.000 19.35 10.96 32.48 3.32
282 283 1.663702 GGAGTGCGCGTGTACAACT 60.664 57.895 19.35 7.61 32.48 3.16
283 284 1.615107 GGAGTGCGCGTGTACAACTC 61.615 60.000 19.35 13.86 32.48 3.01
284 285 1.615107 GAGTGCGCGTGTACAACTCC 61.615 60.000 19.35 0.00 32.48 3.85
285 286 1.663702 GTGCGCGTGTACAACTCCT 60.664 57.895 12.54 0.00 0.00 3.69
287 288 1.080705 GCGCGTGTACAACTCCTCT 60.081 57.895 8.43 0.00 0.00 3.69
288 289 0.666577 GCGCGTGTACAACTCCTCTT 60.667 55.000 8.43 0.00 0.00 2.85
291 292 1.672145 GCGTGTACAACTCCTCTTCCC 60.672 57.143 0.00 0.00 0.00 3.97
293 294 2.036733 CGTGTACAACTCCTCTTCCCAA 59.963 50.000 0.00 0.00 0.00 4.12
294 295 3.493699 CGTGTACAACTCCTCTTCCCAAA 60.494 47.826 0.00 0.00 0.00 3.28
295 296 3.813724 GTGTACAACTCCTCTTCCCAAAC 59.186 47.826 0.00 0.00 0.00 2.93
297 298 3.493767 ACAACTCCTCTTCCCAAACTC 57.506 47.619 0.00 0.00 0.00 3.01
298 299 3.049344 ACAACTCCTCTTCCCAAACTCT 58.951 45.455 0.00 0.00 0.00 3.24
299 300 3.071747 ACAACTCCTCTTCCCAAACTCTC 59.928 47.826 0.00 0.00 0.00 3.20
300 301 2.977808 ACTCCTCTTCCCAAACTCTCA 58.022 47.619 0.00 0.00 0.00 3.27
302 303 3.913163 ACTCCTCTTCCCAAACTCTCAAT 59.087 43.478 0.00 0.00 0.00 2.57
303 304 4.260170 CTCCTCTTCCCAAACTCTCAATG 58.740 47.826 0.00 0.00 0.00 2.82
304 305 3.909995 TCCTCTTCCCAAACTCTCAATGA 59.090 43.478 0.00 0.00 0.00 2.57
307 308 5.246981 TCTTCCCAAACTCTCAATGACAT 57.753 39.130 0.00 0.00 0.00 3.06
308 309 5.005740 TCTTCCCAAACTCTCAATGACATG 58.994 41.667 0.00 0.00 0.00 3.21
310 311 4.074259 TCCCAAACTCTCAATGACATGTG 58.926 43.478 1.15 0.00 0.00 3.21
311 312 3.192001 CCCAAACTCTCAATGACATGTGG 59.808 47.826 1.15 0.00 0.00 4.17
312 313 3.822735 CCAAACTCTCAATGACATGTGGT 59.177 43.478 1.15 0.00 0.00 4.16
313 314 5.003160 CCAAACTCTCAATGACATGTGGTA 58.997 41.667 1.15 0.00 0.00 3.25
314 315 5.122869 CCAAACTCTCAATGACATGTGGTAG 59.877 44.000 1.15 0.00 0.00 3.18
316 317 5.336150 ACTCTCAATGACATGTGGTAGAG 57.664 43.478 1.15 10.45 36.23 2.43
317 318 4.118410 CTCTCAATGACATGTGGTAGAGC 58.882 47.826 1.15 0.00 0.00 4.09
318 319 3.515104 TCTCAATGACATGTGGTAGAGCA 59.485 43.478 1.15 0.00 0.00 4.26
319 320 4.162888 TCTCAATGACATGTGGTAGAGCAT 59.837 41.667 1.15 0.00 0.00 3.79
321 322 2.988010 TGACATGTGGTAGAGCATCC 57.012 50.000 1.15 0.00 33.66 3.51
322 323 1.486310 TGACATGTGGTAGAGCATCCC 59.514 52.381 1.15 0.00 33.66 3.85
323 324 1.765314 GACATGTGGTAGAGCATCCCT 59.235 52.381 1.15 0.00 33.66 4.20
324 325 2.171448 GACATGTGGTAGAGCATCCCTT 59.829 50.000 1.15 0.00 33.66 3.95
325 326 2.171448 ACATGTGGTAGAGCATCCCTTC 59.829 50.000 0.00 0.00 33.66 3.46
327 328 3.398318 TGTGGTAGAGCATCCCTTCTA 57.602 47.619 0.00 0.00 33.66 2.10
328 329 3.719871 TGTGGTAGAGCATCCCTTCTAA 58.280 45.455 0.00 0.00 33.66 2.10
329 330 4.101114 TGTGGTAGAGCATCCCTTCTAAA 58.899 43.478 0.00 0.00 33.66 1.85
341 342 3.897141 CCTTCTAAAGGGGTCTCACTC 57.103 52.381 0.00 0.00 45.27 3.51
343 344 3.449377 CCTTCTAAAGGGGTCTCACTCTC 59.551 52.174 0.00 0.00 45.27 3.20
345 346 3.432378 TCTAAAGGGGTCTCACTCTCAC 58.568 50.000 0.00 0.00 0.00 3.51
347 348 1.931635 AAGGGGTCTCACTCTCACTC 58.068 55.000 0.00 0.00 0.00 3.51
350 351 2.025699 AGGGGTCTCACTCTCACTCTAC 60.026 54.545 0.00 0.00 0.00 2.59
353 354 4.448210 GGGTCTCACTCTCACTCTACTAG 58.552 52.174 0.00 0.00 0.00 2.57
354 355 3.875134 GGTCTCACTCTCACTCTACTAGC 59.125 52.174 0.00 0.00 0.00 3.42
355 356 4.509616 GTCTCACTCTCACTCTACTAGCA 58.490 47.826 0.00 0.00 0.00 3.49
356 357 4.570772 GTCTCACTCTCACTCTACTAGCAG 59.429 50.000 0.00 0.00 0.00 4.24
357 358 4.224147 TCTCACTCTCACTCTACTAGCAGT 59.776 45.833 0.00 0.00 0.00 4.40
359 360 6.099125 TCTCACTCTCACTCTACTAGCAGTAT 59.901 42.308 0.00 0.00 29.08 2.12
360 361 6.052360 TCACTCTCACTCTACTAGCAGTATG 58.948 44.000 0.00 0.00 40.87 2.39
361 362 5.238432 CACTCTCACTCTACTAGCAGTATGG 59.762 48.000 0.00 0.00 35.86 2.74
383 384 7.385778 TGGTACTAAACTTACCATCATTTGC 57.614 36.000 0.00 0.00 43.39 3.68
384 385 6.376018 TGGTACTAAACTTACCATCATTTGCC 59.624 38.462 0.00 0.00 43.39 4.52
387 388 6.866480 ACTAAACTTACCATCATTTGCCATG 58.134 36.000 0.00 0.00 0.00 3.66
388 389 3.806625 ACTTACCATCATTTGCCATGC 57.193 42.857 0.00 0.00 0.00 4.06
389 390 3.098377 ACTTACCATCATTTGCCATGCA 58.902 40.909 0.00 0.00 36.47 3.96
390 391 3.707611 ACTTACCATCATTTGCCATGCAT 59.292 39.130 0.00 0.00 38.76 3.96
391 392 2.902705 ACCATCATTTGCCATGCATC 57.097 45.000 0.00 0.00 38.76 3.91
392 393 2.394632 ACCATCATTTGCCATGCATCT 58.605 42.857 0.00 0.00 38.76 2.90
393 394 3.568443 ACCATCATTTGCCATGCATCTA 58.432 40.909 0.00 0.00 38.76 1.98
394 395 3.962063 ACCATCATTTGCCATGCATCTAA 59.038 39.130 0.00 0.00 38.76 2.10
396 397 5.071250 ACCATCATTTGCCATGCATCTAAAT 59.929 36.000 0.00 1.37 38.76 1.40
398 399 5.855740 TCATTTGCCATGCATCTAAATGA 57.144 34.783 24.45 24.45 38.71 2.57
399 400 5.838529 TCATTTGCCATGCATCTAAATGAG 58.161 37.500 24.45 11.39 37.23 2.90
400 401 3.720949 TTGCCATGCATCTAAATGAGC 57.279 42.857 0.00 0.00 38.76 4.26
402 403 2.236766 GCCATGCATCTAAATGAGCCT 58.763 47.619 0.00 0.00 34.61 4.58
404 405 3.822735 GCCATGCATCTAAATGAGCCTTA 59.177 43.478 0.00 0.00 34.61 2.69
405 406 4.082895 GCCATGCATCTAAATGAGCCTTAG 60.083 45.833 0.00 0.00 34.61 2.18
407 408 5.411977 CCATGCATCTAAATGAGCCTTAGAG 59.588 44.000 0.00 0.00 38.46 2.43
409 410 6.430962 TGCATCTAAATGAGCCTTAGAGAT 57.569 37.500 0.00 0.00 38.46 2.75
410 411 6.835174 TGCATCTAAATGAGCCTTAGAGATT 58.165 36.000 0.00 0.00 38.46 2.40
411 412 7.966812 TGCATCTAAATGAGCCTTAGAGATTA 58.033 34.615 0.00 0.00 38.46 1.75
412 413 8.432013 TGCATCTAAATGAGCCTTAGAGATTAA 58.568 33.333 0.00 0.00 38.46 1.40
413 414 8.716909 GCATCTAAATGAGCCTTAGAGATTAAC 58.283 37.037 0.00 0.00 38.46 2.01
416 417 8.424918 TCTAAATGAGCCTTAGAGATTAACCAG 58.575 37.037 0.00 0.00 31.84 4.00
418 419 5.860941 TGAGCCTTAGAGATTAACCAGAG 57.139 43.478 0.00 0.00 0.00 3.35
419 420 5.519808 TGAGCCTTAGAGATTAACCAGAGA 58.480 41.667 0.00 0.00 0.00 3.10
420 421 6.139671 TGAGCCTTAGAGATTAACCAGAGAT 58.860 40.000 0.00 0.00 0.00 2.75
421 422 6.613271 TGAGCCTTAGAGATTAACCAGAGATT 59.387 38.462 0.00 0.00 0.00 2.40
422 423 7.785028 TGAGCCTTAGAGATTAACCAGAGATTA 59.215 37.037 0.00 0.00 0.00 1.75
423 424 8.734593 AGCCTTAGAGATTAACCAGAGATTAT 57.265 34.615 0.00 0.00 0.00 1.28
424 425 9.165057 AGCCTTAGAGATTAACCAGAGATTATT 57.835 33.333 0.00 0.00 0.00 1.40
425 426 9.213799 GCCTTAGAGATTAACCAGAGATTATTG 57.786 37.037 0.00 0.00 0.00 1.90
438 439 9.326489 ACCAGAGATTATTGTCTTATATAGGCA 57.674 33.333 0.00 0.00 36.48 4.75
459 460 6.242508 GCATAAGCCCAGCTATAAACTAAC 57.757 41.667 0.00 0.00 38.25 2.34
460 461 5.763204 GCATAAGCCCAGCTATAAACTAACA 59.237 40.000 0.00 0.00 38.25 2.41
521 2103 9.757227 TGTTATCCTTGGAAAACTACAAAAATG 57.243 29.630 0.00 0.00 0.00 2.32
523 2105 6.478512 TCCTTGGAAAACTACAAAAATGCT 57.521 33.333 0.00 0.00 0.00 3.79
536 2118 4.247258 CAAAAATGCTGAGCTGCCAAATA 58.753 39.130 5.83 0.00 0.00 1.40
539 2121 1.908344 TGCTGAGCTGCCAAATACAA 58.092 45.000 5.83 0.00 0.00 2.41
547 2129 3.019564 GCTGCCAAATACAACCTGATCT 58.980 45.455 0.00 0.00 0.00 2.75
555 2137 8.303876 GCCAAATACAACCTGATCTTTTTAGAA 58.696 33.333 0.00 0.00 0.00 2.10
638 2220 6.874134 AGACTCACTTATTTTGCTTCGTATGT 59.126 34.615 0.00 0.00 0.00 2.29
738 2332 2.673043 CGTGCACGTAACATCCCTACTT 60.673 50.000 30.50 0.00 34.11 2.24
768 2362 1.318576 CCCAGGTCACAACTTTGTCC 58.681 55.000 0.00 0.00 39.91 4.02
824 2423 1.847088 GGGAGAAGAAACTATGGCCCT 59.153 52.381 0.00 0.00 0.00 5.19
928 2534 5.476091 ACTAGTAGCCATCCAAATCTAGC 57.524 43.478 0.00 0.00 0.00 3.42
972 2579 3.222603 CCCCCATTATTACTTGTGCCTC 58.777 50.000 0.00 0.00 0.00 4.70
976 2583 3.885297 CCATTATTACTTGTGCCTCCTGG 59.115 47.826 0.00 0.00 0.00 4.45
1014 2621 0.548031 TAGCCATGGGAGGAAGCAAG 59.452 55.000 15.13 0.00 0.00 4.01
1016 2623 0.750911 GCCATGGGAGGAAGCAAGAG 60.751 60.000 15.13 0.00 0.00 2.85
1025 2632 1.301293 GAAGCAAGAGGGGTCTGGG 59.699 63.158 0.00 0.00 0.00 4.45
1031 2638 2.049792 AAGAGGGGTCTGGGGAGTGT 62.050 60.000 0.00 0.00 0.00 3.55
1065 2672 4.416738 GTGCTGGGGCTGGTCCTC 62.417 72.222 0.00 0.00 39.59 3.71
1066 2673 4.980592 TGCTGGGGCTGGTCCTCA 62.981 66.667 0.00 0.00 45.03 3.86
1078 2688 1.518903 GGTCCTCAAGCAGGTGCAAC 61.519 60.000 4.48 0.00 43.95 4.17
1079 2689 0.819259 GTCCTCAAGCAGGTGCAACA 60.819 55.000 3.64 0.00 43.95 3.33
1080 2690 0.111061 TCCTCAAGCAGGTGCAACAT 59.889 50.000 3.64 0.00 43.95 2.71
1253 2863 7.919621 AGACACACAACTCACTACTACTTTTAC 59.080 37.037 0.00 0.00 0.00 2.01
1268 2878 8.005192 ACTACTTTTACTTTATACTCCCTCCG 57.995 38.462 0.00 0.00 0.00 4.63
1276 2887 6.553857 ACTTTATACTCCCTCCGTCTCATAT 58.446 40.000 0.00 0.00 0.00 1.78
1277 2888 7.696981 ACTTTATACTCCCTCCGTCTCATATA 58.303 38.462 0.00 0.00 0.00 0.86
1278 2889 7.830201 ACTTTATACTCCCTCCGTCTCATATAG 59.170 40.741 0.00 0.00 0.00 1.31
1303 2914 5.542779 ACTAATTACCGCTCAATCTGATCC 58.457 41.667 0.00 0.00 0.00 3.36
1323 2934 7.497595 TGATCCATCTAGCACTAAAATACGTT 58.502 34.615 0.00 0.00 0.00 3.99
1406 3017 4.196193 CCATTGGGACGCAGAAAGTATAA 58.804 43.478 0.00 0.00 35.59 0.98
1630 3438 4.383118 GCAGCTTAGAATGTAGGTCTTCCA 60.383 45.833 0.00 0.00 35.89 3.53
1643 3451 3.149196 GGTCTTCCATGTGTGACAACAT 58.851 45.455 10.08 0.00 41.50 2.71
1757 3566 4.730613 GCATACTATGTTTCTTTGGCACCG 60.731 45.833 0.00 0.00 0.00 4.94
1762 3571 1.173913 GTTTCTTTGGCACCGGCTAT 58.826 50.000 0.00 0.00 40.87 2.97
1807 3619 0.798776 GTGAAACTCTGCGGTGATGG 59.201 55.000 0.68 0.00 0.00 3.51
1820 3632 3.426159 GCGGTGATGGTTGTGATAGTTTG 60.426 47.826 0.00 0.00 0.00 2.93
1907 3719 5.596845 TGAAATTTCACAGGCCAAAGTTAC 58.403 37.500 16.91 0.00 31.01 2.50
1934 3748 4.989797 TCGCCTTCGTGTTCAATAAAACTA 59.010 37.500 0.00 0.00 36.96 2.24
1965 3779 3.003480 GAGAGTATCCAAACCAGTGTGC 58.997 50.000 0.00 0.00 33.66 4.57
1975 3789 1.102978 ACCAGTGTGCCAGTTTGTTC 58.897 50.000 0.00 0.00 0.00 3.18
2078 4364 6.930731 TGAGCATATGCCTCGTGTAATATTA 58.069 36.000 23.96 0.00 43.38 0.98
2236 4824 6.127451 GGTTTTGACCTCCTTTTTGAAGAGAA 60.127 38.462 0.00 0.00 0.00 2.87
2284 4874 0.818040 ACCGGTCAAACAAGTCTGGC 60.818 55.000 0.00 0.00 0.00 4.85
2340 4962 7.259882 TGCAATATTCAAGGACATGTTCATTC 58.740 34.615 6.96 0.00 0.00 2.67
2341 4963 7.123098 TGCAATATTCAAGGACATGTTCATTCT 59.877 33.333 6.96 0.00 0.00 2.40
2342 4964 7.977853 GCAATATTCAAGGACATGTTCATTCTT 59.022 33.333 6.96 0.80 0.00 2.52
2343 4965 9.865321 CAATATTCAAGGACATGTTCATTCTTT 57.135 29.630 6.96 0.00 0.00 2.52
2367 4989 4.811555 TGCGAAATATACAAGGACATGC 57.188 40.909 0.00 0.00 0.00 4.06
2368 4990 4.450976 TGCGAAATATACAAGGACATGCT 58.549 39.130 0.00 0.00 0.00 3.79
2369 4991 4.511454 TGCGAAATATACAAGGACATGCTC 59.489 41.667 0.00 0.00 0.00 4.26
2370 4992 4.511454 GCGAAATATACAAGGACATGCTCA 59.489 41.667 0.00 0.00 0.00 4.26
2371 4993 5.180117 GCGAAATATACAAGGACATGCTCAT 59.820 40.000 0.00 0.00 0.00 2.90
2372 4994 6.293626 GCGAAATATACAAGGACATGCTCATT 60.294 38.462 0.00 0.00 0.00 2.57
2373 4995 7.642669 CGAAATATACAAGGACATGCTCATTT 58.357 34.615 0.00 0.00 0.00 2.32
2374 4996 8.131100 CGAAATATACAAGGACATGCTCATTTT 58.869 33.333 0.00 0.00 0.00 1.82
2375 4997 9.455847 GAAATATACAAGGACATGCTCATTTTC 57.544 33.333 0.00 0.00 0.00 2.29
2529 5167 0.171007 ACGCTAGCGCTTAAACGGTA 59.829 50.000 35.63 9.55 44.38 4.02
2775 5428 7.939782 TCTTCATGTGTCTTGAGCAAAAATAA 58.060 30.769 0.00 0.00 0.00 1.40
2776 5429 8.412456 TCTTCATGTGTCTTGAGCAAAAATAAA 58.588 29.630 0.00 0.00 0.00 1.40
2777 5430 8.939201 TTCATGTGTCTTGAGCAAAAATAAAA 57.061 26.923 0.00 0.00 0.00 1.52
2778 5431 8.351495 TCATGTGTCTTGAGCAAAAATAAAAC 57.649 30.769 0.00 0.00 0.00 2.43
2779 5432 7.978414 TCATGTGTCTTGAGCAAAAATAAAACA 59.022 29.630 0.00 0.00 0.00 2.83
2780 5433 8.602328 CATGTGTCTTGAGCAAAAATAAAACAA 58.398 29.630 0.00 0.00 0.00 2.83
2861 5518 7.928307 ATATGAACATGCAACTCTGTTAAGT 57.072 32.000 3.48 0.00 35.80 2.24
2965 5622 8.817100 TCAATGCTACAAATCTATTAACGACTG 58.183 33.333 0.00 0.00 0.00 3.51
3057 5718 2.094100 TGGTTCCAGCCAAAATTCCA 57.906 45.000 0.00 0.00 35.25 3.53
3370 6034 0.610174 CTAGGCCTGACAAGTGAGCA 59.390 55.000 17.99 0.00 0.00 4.26
3387 6051 3.119531 TGAGCATTGCCGGTCAATTTTAG 60.120 43.478 17.85 10.30 42.48 1.85
3500 6170 2.480555 GGGTGCTGCGAATTCACG 59.519 61.111 6.22 0.00 0.00 4.35
3517 6187 2.278142 GCGCATCATTTGTCCGCC 60.278 61.111 0.30 0.00 38.84 6.13
3544 6214 3.244249 GCCTCTTGCGGGAGTTATATCTT 60.244 47.826 5.28 0.00 0.00 2.40
3546 6216 4.202264 CCTCTTGCGGGAGTTATATCTTGT 60.202 45.833 5.28 0.00 0.00 3.16
3550 6220 7.506114 TCTTGCGGGAGTTATATCTTGTTTAT 58.494 34.615 0.00 0.00 0.00 1.40
3554 6224 6.872020 GCGGGAGTTATATCTTGTTTATAGCA 59.128 38.462 0.00 0.00 0.00 3.49
3570 6240 7.512746 TGTTTATAGCAAGATGTATACTCCCCT 59.487 37.037 4.17 0.00 0.00 4.79
3585 6255 1.349688 TCCCCTCGCTTGAAGCTTTTA 59.650 47.619 15.92 0.00 39.60 1.52
3612 6282 1.321743 CACTCATTCGCTAGTTGTCGC 59.678 52.381 0.00 0.00 0.00 5.19
3918 6600 7.424227 TTTTTCGATACACCTCGTACATTTT 57.576 32.000 0.00 0.00 39.62 1.82
3919 6601 7.424227 TTTTCGATACACCTCGTACATTTTT 57.576 32.000 0.00 0.00 39.62 1.94
3920 6602 6.636666 TTCGATACACCTCGTACATTTTTC 57.363 37.500 0.00 0.00 39.62 2.29
3921 6603 5.957798 TCGATACACCTCGTACATTTTTCT 58.042 37.500 0.00 0.00 39.62 2.52
3922 6604 6.392354 TCGATACACCTCGTACATTTTTCTT 58.608 36.000 0.00 0.00 39.62 2.52
3923 6605 7.537715 TCGATACACCTCGTACATTTTTCTTA 58.462 34.615 0.00 0.00 39.62 2.10
3924 6606 8.192774 TCGATACACCTCGTACATTTTTCTTAT 58.807 33.333 0.00 0.00 39.62 1.73
3925 6607 9.454585 CGATACACCTCGTACATTTTTCTTATA 57.545 33.333 0.00 0.00 34.00 0.98
3955 6637 9.737427 ATGAAACGTTATTTGTGTACATTTTCA 57.263 25.926 0.00 0.00 34.68 2.69
3956 6638 9.227490 TGAAACGTTATTTGTGTACATTTTCAG 57.773 29.630 0.00 0.00 0.00 3.02
3957 6639 9.228636 GAAACGTTATTTGTGTACATTTTCAGT 57.771 29.630 0.00 0.00 0.00 3.41
4156 6843 7.541783 CCAGACACATTGTACATTTTTGGTATG 59.458 37.037 0.00 0.00 0.00 2.39
4245 6934 6.873076 ACACATGTTTTTGAACATTGTTGTCT 59.127 30.769 6.80 0.00 41.12 3.41
4338 7031 3.839293 TGCACAAACACTTGTTAACACC 58.161 40.909 8.07 0.00 43.45 4.16
4394 7088 8.988060 TGTCTACATTTTCCATAGACCATCTAA 58.012 33.333 7.89 0.00 42.74 2.10
4537 7235 9.105206 TCTATACGCGTTTAACATTTTTCAAAC 57.895 29.630 20.78 0.00 0.00 2.93
4675 7650 2.464796 TTAAGGCCCGTGGATCTCTA 57.535 50.000 0.00 0.00 0.00 2.43
4678 7653 2.336809 GCCCGTGGATCTCTAGCG 59.663 66.667 0.00 0.00 0.00 4.26
4688 7663 4.277593 CTCTAGCGAGCTGGGCCG 62.278 72.222 7.99 0.00 0.00 6.13
4707 7682 1.048601 GGCCCATATCGTCTCCTTCA 58.951 55.000 0.00 0.00 0.00 3.02
4716 7691 3.697619 TCGTCTCCTTCAGTCTCACTA 57.302 47.619 0.00 0.00 0.00 2.74
4754 7729 9.942526 ATAATTATCTGAGAAATTTTGGTCCCT 57.057 29.630 7.53 0.00 0.00 4.20
4755 7730 7.888250 ATTATCTGAGAAATTTTGGTCCCTC 57.112 36.000 0.00 0.00 0.00 4.30
4756 7731 3.674997 TCTGAGAAATTTTGGTCCCTCG 58.325 45.455 0.00 0.00 0.00 4.63
4759 7734 1.075536 AGAAATTTTGGTCCCTCGGCT 59.924 47.619 0.00 0.00 0.00 5.52
4760 7735 1.472878 GAAATTTTGGTCCCTCGGCTC 59.527 52.381 0.00 0.00 0.00 4.70
4762 7737 2.536997 ATTTTGGTCCCTCGGCTCCG 62.537 60.000 1.14 1.14 41.35 4.63
4786 7762 1.687612 CATCTTGGCACTGGGAGGT 59.312 57.895 0.00 0.00 0.00 3.85
4790 7766 4.590553 TGGCACTGGGAGGTGGGA 62.591 66.667 0.00 0.00 37.65 4.37
4807 7786 1.486211 GGAGGACCTCGGATCTTCAA 58.514 55.000 15.46 0.00 0.00 2.69
4830 7809 6.961360 AGATCTATATGTTCCTCGTCAACA 57.039 37.500 0.00 0.00 38.12 3.33
4835 7814 5.670792 ATATGTTCCTCGTCAACACCTAA 57.329 39.130 0.00 0.00 36.59 2.69
4843 7822 3.766151 TCGTCAACACCTAATGATCGTC 58.234 45.455 0.00 0.00 0.00 4.20
4882 7861 2.495084 ACTTCCTCTCGTTCTTTTGGC 58.505 47.619 0.00 0.00 0.00 4.52
4906 7885 4.042187 AGTGCCATGAGGTTAGAGAGTTTT 59.958 41.667 0.00 0.00 37.19 2.43
4914 7893 5.244178 TGAGGTTAGAGAGTTTTCTGTCCTC 59.756 44.000 15.08 15.08 42.27 3.71
4930 7909 6.115446 TCTGTCCTCGCAGATTTGATTATTT 58.885 36.000 0.00 0.00 40.23 1.40
4962 7942 4.142381 TGAGTTATGTGATGAGGACGTCAG 60.142 45.833 18.91 0.00 41.84 3.51
4974 7954 4.281435 TGAGGACGTCAGTACCATTGTTAA 59.719 41.667 18.91 0.00 0.00 2.01
4980 7960 4.698304 CGTCAGTACCATTGTTAAACCCAT 59.302 41.667 0.00 0.00 0.00 4.00
4981 7961 5.182380 CGTCAGTACCATTGTTAAACCCATT 59.818 40.000 0.00 0.00 0.00 3.16
4988 7968 2.407340 TGTTAAACCCATTGCCCCTT 57.593 45.000 0.00 0.00 0.00 3.95
5013 7993 8.435931 TCTGCTATACATACTGGACCAATTAT 57.564 34.615 0.00 0.00 0.00 1.28
5015 7995 9.507329 CTGCTATACATACTGGACCAATTATTT 57.493 33.333 0.00 0.00 0.00 1.40
5411 8434 6.131264 TCTTTTAGAGTCCGTATGTATGGGA 58.869 40.000 0.00 0.00 33.10 4.37
5449 8472 1.290134 GTTTCAGACCCCTCCTCCAT 58.710 55.000 0.00 0.00 0.00 3.41
5451 8474 2.170817 GTTTCAGACCCCTCCTCCATAC 59.829 54.545 0.00 0.00 0.00 2.39
5453 8485 1.115930 CAGACCCCTCCTCCATACGG 61.116 65.000 0.00 0.00 0.00 4.02
5519 8590 8.880878 TTTGGTTTTGTTTAGATTAAAGCTCC 57.119 30.769 0.00 0.00 0.00 4.70
5588 8688 2.035237 GACGTCACAGAACCCCACCA 62.035 60.000 11.55 0.00 0.00 4.17
5634 8835 8.510243 TTATATTCGCATATCCAGATTGCAAT 57.490 30.769 12.83 12.83 36.15 3.56
5661 9602 4.695217 TTCTTGCTTGTTCTTCGTTTGT 57.305 36.364 0.00 0.00 0.00 2.83
5701 10736 0.396435 TGGTCAGGTTGATCGTGCTT 59.604 50.000 0.00 0.00 27.66 3.91
5703 10738 1.608025 GGTCAGGTTGATCGTGCTTCA 60.608 52.381 0.00 0.00 32.68 3.02
5771 10809 1.440850 CGTCCTCGCACGTTCGTAA 60.441 57.895 7.61 0.00 34.95 3.18
5785 10823 3.301379 CGTTCGTAATCGGATCGTCAAAA 59.699 43.478 0.00 0.00 37.69 2.44
5788 10826 4.046462 TCGTAATCGGATCGTCAAAATCC 58.954 43.478 0.00 0.00 39.51 3.01
5793 10831 3.670625 TCGGATCGTCAAAATCCACTTT 58.329 40.909 3.29 0.00 42.45 2.66
5797 10837 4.217550 GGATCGTCAAAATCCACTTTTCCA 59.782 41.667 0.00 0.00 42.01 3.53
5847 10889 1.927174 CGAACACCTTTGCCTCTATCG 59.073 52.381 0.00 0.00 0.00 2.92
5857 10899 2.833794 TGCCTCTATCGTTATGTTGCC 58.166 47.619 0.00 0.00 0.00 4.52
5860 10902 3.551454 GCCTCTATCGTTATGTTGCCGTA 60.551 47.826 0.00 0.00 0.00 4.02
5862 10904 4.857588 CCTCTATCGTTATGTTGCCGTATC 59.142 45.833 0.00 0.00 0.00 2.24
5902 10947 6.462909 GGTTTGATTCTTTGTGGAGGTGAAAT 60.463 38.462 0.00 0.00 0.00 2.17
5939 10985 6.587990 CCATGGTGAAGATATAGTGATTCGAC 59.412 42.308 2.57 0.00 0.00 4.20
5943 10989 3.851976 AGATATAGTGATTCGACGGCC 57.148 47.619 0.00 0.00 0.00 6.13
5945 10991 4.586884 AGATATAGTGATTCGACGGCCTA 58.413 43.478 0.00 0.00 0.00 3.93
5946 10992 5.194432 AGATATAGTGATTCGACGGCCTAT 58.806 41.667 0.00 0.00 0.00 2.57
5954 11000 4.454847 TGATTCGACGGCCTATACTTCTAG 59.545 45.833 0.00 0.00 0.00 2.43
5965 11011 5.578927 GCCTATACTTCTAGGGGATCATCCT 60.579 48.000 2.93 11.00 39.01 3.24
5973 11019 1.152368 GGGATCATCCTGGCCCAAG 59.848 63.158 2.93 0.00 40.39 3.61
5980 11026 0.696501 ATCCTGGCCCAAGTACGTTT 59.303 50.000 0.00 0.00 0.00 3.60
5987 11033 3.200483 GGCCCAAGTACGTTTATCGATT 58.800 45.455 1.71 0.00 42.86 3.34
5999 11045 5.820947 ACGTTTATCGATTAAGGCTTTCCAT 59.179 36.000 14.70 0.00 42.86 3.41
6007 11053 7.985476 TCGATTAAGGCTTTCCATCTTTTTAG 58.015 34.615 4.45 0.00 33.74 1.85
6035 11081 2.407090 GCTCAAGGCGCTTTCAAAAAT 58.593 42.857 7.64 0.00 0.00 1.82
6044 11090 5.063817 AGGCGCTTTCAAAAATCATTATTGC 59.936 36.000 7.64 0.00 0.00 3.56
6049 11095 9.679596 CGCTTTCAAAAATCATTATTGCTAAAG 57.320 29.630 0.00 0.00 0.00 1.85
6059 11105 7.000575 TCATTATTGCTAAAGTTCGTGTAGC 57.999 36.000 0.00 0.00 40.56 3.58
6073 11119 2.726760 CGTGTAGCTGAAAGAGTGACAC 59.273 50.000 0.00 0.00 36.66 3.67
6074 11120 3.717707 GTGTAGCTGAAAGAGTGACACA 58.282 45.455 8.59 0.00 38.40 3.72
6075 11121 4.310769 GTGTAGCTGAAAGAGTGACACAT 58.689 43.478 8.59 0.00 38.40 3.21
6077 11123 4.751600 TGTAGCTGAAAGAGTGACACATTG 59.248 41.667 8.59 0.00 34.07 2.82
6080 11127 5.368145 AGCTGAAAGAGTGACACATTGTTA 58.632 37.500 8.59 0.00 34.07 2.41
6103 11150 5.785243 ACTCTAGTTTAGTTGCAACCTCTC 58.215 41.667 25.62 13.90 0.00 3.20
6115 11162 4.017808 TGCAACCTCTCTACCTAAGTCTC 58.982 47.826 0.00 0.00 0.00 3.36
6128 11176 9.398538 TCTACCTAAGTCTCTGAGTATTTCTTC 57.601 37.037 4.32 0.00 0.00 2.87
6132 11180 8.527810 CCTAAGTCTCTGAGTATTTCTTCAAGT 58.472 37.037 4.32 0.00 0.00 3.16
6136 11184 9.921637 AGTCTCTGAGTATTTCTTCAAGTAAAG 57.078 33.333 4.32 0.00 0.00 1.85
6137 11185 9.915629 GTCTCTGAGTATTTCTTCAAGTAAAGA 57.084 33.333 4.32 0.00 33.50 2.52
6149 11197 9.958180 TTCTTCAAGTAAAGATTGATACCATGA 57.042 29.630 0.00 0.00 36.60 3.07
6150 11198 9.958180 TCTTCAAGTAAAGATTGATACCATGAA 57.042 29.630 0.00 0.00 36.60 2.57
6152 11200 9.958180 TTCAAGTAAAGATTGATACCATGAAGA 57.042 29.630 0.00 0.00 36.60 2.87
6153 11201 9.958180 TCAAGTAAAGATTGATACCATGAAGAA 57.042 29.630 0.00 0.00 31.86 2.52
6155 11203 8.970859 AGTAAAGATTGATACCATGAAGAAGG 57.029 34.615 0.00 0.00 0.00 3.46
6156 11204 8.552296 AGTAAAGATTGATACCATGAAGAAGGT 58.448 33.333 0.00 0.00 41.89 3.50
6157 11205 7.636150 AAAGATTGATACCATGAAGAAGGTG 57.364 36.000 0.00 0.00 38.87 4.00
6158 11206 6.319048 AGATTGATACCATGAAGAAGGTGT 57.681 37.500 0.00 0.00 38.87 4.16
6159 11207 6.725364 AGATTGATACCATGAAGAAGGTGTT 58.275 36.000 0.00 0.00 38.87 3.32
6160 11208 7.177878 AGATTGATACCATGAAGAAGGTGTTT 58.822 34.615 0.00 0.00 38.87 2.83
6161 11209 8.328758 AGATTGATACCATGAAGAAGGTGTTTA 58.671 33.333 0.00 0.00 38.87 2.01
6162 11210 7.681939 TTGATACCATGAAGAAGGTGTTTAC 57.318 36.000 0.00 0.00 38.87 2.01
6163 11211 6.774673 TGATACCATGAAGAAGGTGTTTACA 58.225 36.000 0.00 0.00 38.87 2.41
6164 11212 7.227873 TGATACCATGAAGAAGGTGTTTACAA 58.772 34.615 0.00 0.00 38.87 2.41
6165 11213 7.390440 TGATACCATGAAGAAGGTGTTTACAAG 59.610 37.037 0.00 0.00 38.87 3.16
6166 11214 5.690865 ACCATGAAGAAGGTGTTTACAAGA 58.309 37.500 0.00 0.00 36.60 3.02
6167 11215 6.306987 ACCATGAAGAAGGTGTTTACAAGAT 58.693 36.000 0.00 0.00 36.60 2.40
6168 11216 7.458397 ACCATGAAGAAGGTGTTTACAAGATA 58.542 34.615 0.00 0.00 36.60 1.98
6169 11217 8.109634 ACCATGAAGAAGGTGTTTACAAGATAT 58.890 33.333 0.00 0.00 36.60 1.63
6170 11218 8.960591 CCATGAAGAAGGTGTTTACAAGATATT 58.039 33.333 0.00 0.00 0.00 1.28
6173 11221 9.567776 TGAAGAAGGTGTTTACAAGATATTTCA 57.432 29.630 0.00 0.00 0.00 2.69
6238 11286 7.335171 TGATCTTAGATCCAAATCAGTGTGTTG 59.665 37.037 18.33 0.00 34.07 3.33
6239 11287 6.533730 TCTTAGATCCAAATCAGTGTGTTGT 58.466 36.000 7.46 0.00 34.07 3.32
6240 11288 7.676004 TCTTAGATCCAAATCAGTGTGTTGTA 58.324 34.615 7.46 0.00 34.07 2.41
6241 11289 8.154203 TCTTAGATCCAAATCAGTGTGTTGTAA 58.846 33.333 7.46 1.24 34.07 2.41
6243 11291 7.765695 AGATCCAAATCAGTGTGTTGTAATT 57.234 32.000 7.46 0.00 34.07 1.40
6244 11292 7.596494 AGATCCAAATCAGTGTGTTGTAATTG 58.404 34.615 7.46 0.00 34.07 2.32
6246 11294 7.106439 TCCAAATCAGTGTGTTGTAATTGTT 57.894 32.000 7.46 0.00 0.00 2.83
6250 11298 9.676195 CAAATCAGTGTGTTGTAATTGTTATGA 57.324 29.630 0.00 0.00 0.00 2.15
6253 11301 6.484977 TCAGTGTGTTGTAATTGTTATGAGCA 59.515 34.615 0.00 0.00 0.00 4.26
6254 11302 6.578545 CAGTGTGTTGTAATTGTTATGAGCAC 59.421 38.462 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.322804 CACGAGCTTCAAAATTGCATTCTC 59.677 41.667 0.00 0.00 0.00 2.87
2 3 3.181537 GCACGAGCTTCAAAATTGCATTC 60.182 43.478 0.00 0.00 37.91 2.67
4 5 2.331194 GCACGAGCTTCAAAATTGCAT 58.669 42.857 0.00 0.00 37.91 3.96
5 6 1.769733 GCACGAGCTTCAAAATTGCA 58.230 45.000 0.00 0.00 37.91 4.08
17 18 1.796796 CCTTAGCCAAAGCACGAGC 59.203 57.895 0.00 0.00 43.56 5.03
18 19 0.674895 AGCCTTAGCCAAAGCACGAG 60.675 55.000 0.00 0.00 43.56 4.18
20 21 0.169009 GAAGCCTTAGCCAAAGCACG 59.831 55.000 0.00 0.00 43.56 5.34
21 22 0.169009 CGAAGCCTTAGCCAAAGCAC 59.831 55.000 0.00 0.00 43.56 4.40
22 23 0.960364 CCGAAGCCTTAGCCAAAGCA 60.960 55.000 0.00 0.00 43.56 3.91
23 24 1.803289 CCGAAGCCTTAGCCAAAGC 59.197 57.895 0.00 0.00 41.25 3.51
24 25 1.803289 GCCGAAGCCTTAGCCAAAG 59.197 57.895 0.00 0.00 41.25 2.77
35 36 2.821810 GGCAAGAGAGGCCGAAGC 60.822 66.667 0.00 0.00 42.39 3.86
42 43 4.821589 GTCCCGCGGCAAGAGAGG 62.822 72.222 22.85 2.99 0.00 3.69
54 55 2.734948 TAACCAAAGGTGCCGTCCCG 62.735 60.000 0.00 0.00 35.34 5.14
55 56 0.323087 ATAACCAAAGGTGCCGTCCC 60.323 55.000 0.00 0.00 35.34 4.46
57 58 1.092348 GGATAACCAAAGGTGCCGTC 58.908 55.000 0.00 0.00 35.34 4.79
59 60 3.257935 TGGATAACCAAAGGTGCCG 57.742 52.632 0.00 0.00 43.91 5.69
69 70 7.520451 AAAACAGTAGGAAAAGTGGATAACC 57.480 36.000 0.00 0.00 0.00 2.85
75 76 9.673454 GTACAAATAAAACAGTAGGAAAAGTGG 57.327 33.333 0.00 0.00 0.00 4.00
76 77 9.673454 GGTACAAATAAAACAGTAGGAAAAGTG 57.327 33.333 0.00 0.00 0.00 3.16
77 78 9.411189 TGGTACAAATAAAACAGTAGGAAAAGT 57.589 29.630 0.00 0.00 31.92 2.66
106 107 9.357652 CCACACTTTATTTAAACCTCAATGATG 57.642 33.333 0.00 0.00 0.00 3.07
107 108 9.088987 ACCACACTTTATTTAAACCTCAATGAT 57.911 29.630 0.00 0.00 0.00 2.45
108 109 8.356657 CACCACACTTTATTTAAACCTCAATGA 58.643 33.333 0.00 0.00 0.00 2.57
109 110 8.356657 TCACCACACTTTATTTAAACCTCAATG 58.643 33.333 0.00 0.00 0.00 2.82
113 114 6.294342 GGGTCACCACACTTTATTTAAACCTC 60.294 42.308 0.00 0.00 36.50 3.85
114 115 5.537295 GGGTCACCACACTTTATTTAAACCT 59.463 40.000 0.00 0.00 36.50 3.50
115 116 5.537295 AGGGTCACCACACTTTATTTAAACC 59.463 40.000 0.00 0.00 28.53 3.27
116 117 6.644248 AGGGTCACCACACTTTATTTAAAC 57.356 37.500 0.00 0.00 28.53 2.01
118 119 8.763984 TTTTAGGGTCACCACACTTTATTTAA 57.236 30.769 0.00 0.00 37.49 1.52
119 120 8.763984 TTTTTAGGGTCACCACACTTTATTTA 57.236 30.769 0.00 0.00 37.49 1.40
120 121 7.663043 TTTTTAGGGTCACCACACTTTATTT 57.337 32.000 0.00 0.00 37.49 1.40
157 158 8.971321 CAGTCAGAAATTGTTAATTGTTCTTGG 58.029 33.333 0.00 0.00 0.00 3.61
158 159 8.971321 CCAGTCAGAAATTGTTAATTGTTCTTG 58.029 33.333 0.00 0.00 0.00 3.02
159 160 7.653311 GCCAGTCAGAAATTGTTAATTGTTCTT 59.347 33.333 0.00 0.00 0.00 2.52
160 161 7.147976 GCCAGTCAGAAATTGTTAATTGTTCT 58.852 34.615 0.00 0.00 0.00 3.01
161 162 6.922957 TGCCAGTCAGAAATTGTTAATTGTTC 59.077 34.615 0.00 0.00 0.00 3.18
162 163 6.815089 TGCCAGTCAGAAATTGTTAATTGTT 58.185 32.000 0.00 0.00 0.00 2.83
163 164 6.403866 TGCCAGTCAGAAATTGTTAATTGT 57.596 33.333 0.00 0.00 0.00 2.71
164 165 7.712264 TTTGCCAGTCAGAAATTGTTAATTG 57.288 32.000 0.00 0.00 0.00 2.32
167 168 9.823647 TTATTTTTGCCAGTCAGAAATTGTTAA 57.176 25.926 0.00 0.00 39.38 2.01
168 169 9.474920 CTTATTTTTGCCAGTCAGAAATTGTTA 57.525 29.630 0.00 0.00 39.38 2.41
171 172 6.647895 AGCTTATTTTTGCCAGTCAGAAATTG 59.352 34.615 0.00 0.00 39.38 2.32
173 174 6.350629 AGCTTATTTTTGCCAGTCAGAAAT 57.649 33.333 0.00 0.00 40.96 2.17
174 175 5.789643 AGCTTATTTTTGCCAGTCAGAAA 57.210 34.783 0.00 0.00 33.96 2.52
175 176 5.562696 CGAAGCTTATTTTTGCCAGTCAGAA 60.563 40.000 0.00 0.00 0.00 3.02
177 178 4.161333 CGAAGCTTATTTTTGCCAGTCAG 58.839 43.478 0.00 0.00 0.00 3.51
178 179 3.057596 CCGAAGCTTATTTTTGCCAGTCA 60.058 43.478 0.00 0.00 0.00 3.41
181 182 2.262211 GCCGAAGCTTATTTTTGCCAG 58.738 47.619 0.00 0.00 35.50 4.85
182 183 2.362169 GCCGAAGCTTATTTTTGCCA 57.638 45.000 0.00 0.00 35.50 4.92
204 205 3.351416 GTCACGGGTTGCCGGAAC 61.351 66.667 5.05 6.95 37.53 3.62
205 206 4.973055 CGTCACGGGTTGCCGGAA 62.973 66.667 5.05 0.00 37.53 4.30
210 211 4.307908 GTGCACGTCACGGGTTGC 62.308 66.667 0.00 2.23 35.76 4.17
233 234 3.470567 CAAGCCTCGCGTCGTCAC 61.471 66.667 5.77 0.00 0.00 3.67
238 239 3.184683 CTCTGCAAGCCTCGCGTC 61.185 66.667 5.77 0.00 0.00 5.19
239 240 4.749310 CCTCTGCAAGCCTCGCGT 62.749 66.667 5.77 0.00 0.00 6.01
240 241 4.441695 TCCTCTGCAAGCCTCGCG 62.442 66.667 0.00 0.00 0.00 5.87
241 242 2.511145 CTCCTCTGCAAGCCTCGC 60.511 66.667 0.00 0.00 0.00 5.03
242 243 2.186384 CCTCCTCTGCAAGCCTCG 59.814 66.667 0.00 0.00 0.00 4.63
243 244 2.588989 CCCTCCTCTGCAAGCCTC 59.411 66.667 0.00 0.00 0.00 4.70
245 246 4.120755 CCCCCTCCTCTGCAAGCC 62.121 72.222 0.00 0.00 0.00 4.35
246 247 3.011517 TCCCCCTCCTCTGCAAGC 61.012 66.667 0.00 0.00 0.00 4.01
247 248 2.373707 CCTCCCCCTCCTCTGCAAG 61.374 68.421 0.00 0.00 0.00 4.01
248 249 2.285668 CCTCCCCCTCCTCTGCAA 60.286 66.667 0.00 0.00 0.00 4.08
250 251 2.445654 CTCCTCCCCCTCCTCTGC 60.446 72.222 0.00 0.00 0.00 4.26
251 252 1.382420 CACTCCTCCCCCTCCTCTG 60.382 68.421 0.00 0.00 0.00 3.35
253 254 2.766229 GCACTCCTCCCCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
260 261 3.755628 TACACGCGCACTCCTCCC 61.756 66.667 5.73 0.00 0.00 4.30
261 262 2.506438 GTACACGCGCACTCCTCC 60.506 66.667 5.73 0.00 0.00 4.30
262 263 1.372499 TTGTACACGCGCACTCCTC 60.372 57.895 5.73 0.00 0.00 3.71
263 264 1.663702 GTTGTACACGCGCACTCCT 60.664 57.895 5.73 0.00 0.00 3.69
264 265 1.615107 GAGTTGTACACGCGCACTCC 61.615 60.000 5.73 0.00 0.00 3.85
265 266 1.615107 GGAGTTGTACACGCGCACTC 61.615 60.000 5.73 13.86 0.00 3.51
267 268 1.615107 GAGGAGTTGTACACGCGCAC 61.615 60.000 5.73 1.95 0.00 5.34
268 269 1.372499 GAGGAGTTGTACACGCGCA 60.372 57.895 5.73 0.00 0.00 6.09
270 271 1.337821 GAAGAGGAGTTGTACACGCG 58.662 55.000 3.53 3.53 0.00 6.01
272 273 1.616865 TGGGAAGAGGAGTTGTACACG 59.383 52.381 0.00 0.00 0.00 4.49
273 274 3.764237 TTGGGAAGAGGAGTTGTACAC 57.236 47.619 0.00 0.00 0.00 2.90
274 275 3.714798 AGTTTGGGAAGAGGAGTTGTACA 59.285 43.478 0.00 0.00 0.00 2.90
275 276 4.040584 AGAGTTTGGGAAGAGGAGTTGTAC 59.959 45.833 0.00 0.00 0.00 2.90
277 278 3.049344 AGAGTTTGGGAAGAGGAGTTGT 58.951 45.455 0.00 0.00 0.00 3.32
280 281 2.977808 TGAGAGTTTGGGAAGAGGAGT 58.022 47.619 0.00 0.00 0.00 3.85
281 282 4.019860 TCATTGAGAGTTTGGGAAGAGGAG 60.020 45.833 0.00 0.00 0.00 3.69
282 283 3.909995 TCATTGAGAGTTTGGGAAGAGGA 59.090 43.478 0.00 0.00 0.00 3.71
283 284 4.006319 GTCATTGAGAGTTTGGGAAGAGG 58.994 47.826 0.00 0.00 0.00 3.69
284 285 4.645535 TGTCATTGAGAGTTTGGGAAGAG 58.354 43.478 0.00 0.00 0.00 2.85
285 286 4.705110 TGTCATTGAGAGTTTGGGAAGA 57.295 40.909 0.00 0.00 0.00 2.87
287 288 4.520111 CACATGTCATTGAGAGTTTGGGAA 59.480 41.667 0.00 0.00 0.00 3.97
288 289 4.074259 CACATGTCATTGAGAGTTTGGGA 58.926 43.478 0.00 0.00 0.00 4.37
291 292 5.934043 TCTACCACATGTCATTGAGAGTTTG 59.066 40.000 0.00 0.00 0.00 2.93
293 294 5.728471 CTCTACCACATGTCATTGAGAGTT 58.272 41.667 10.16 0.00 0.00 3.01
294 295 4.382470 GCTCTACCACATGTCATTGAGAGT 60.382 45.833 16.62 1.67 33.32 3.24
295 296 4.118410 GCTCTACCACATGTCATTGAGAG 58.882 47.826 16.62 14.42 33.79 3.20
297 298 3.865446 TGCTCTACCACATGTCATTGAG 58.135 45.455 0.00 4.25 0.00 3.02
298 299 3.979101 TGCTCTACCACATGTCATTGA 57.021 42.857 0.00 0.00 0.00 2.57
299 300 3.562973 GGATGCTCTACCACATGTCATTG 59.437 47.826 0.00 0.00 0.00 2.82
300 301 3.434167 GGGATGCTCTACCACATGTCATT 60.434 47.826 0.00 0.00 0.00 2.57
302 303 1.486310 GGGATGCTCTACCACATGTCA 59.514 52.381 0.00 0.00 0.00 3.58
303 304 1.765314 AGGGATGCTCTACCACATGTC 59.235 52.381 0.00 0.00 0.00 3.06
304 305 1.885049 AGGGATGCTCTACCACATGT 58.115 50.000 0.00 0.00 0.00 3.21
307 308 2.254152 AGAAGGGATGCTCTACCACA 57.746 50.000 0.00 0.00 0.00 4.17
308 309 4.443598 CCTTTAGAAGGGATGCTCTACCAC 60.444 50.000 0.00 0.00 45.27 4.16
310 311 4.344359 CCTTTAGAAGGGATGCTCTACC 57.656 50.000 0.00 0.00 45.27 3.18
322 323 4.081917 GTGAGAGTGAGACCCCTTTAGAAG 60.082 50.000 0.00 0.00 0.00 2.85
323 324 3.833070 GTGAGAGTGAGACCCCTTTAGAA 59.167 47.826 0.00 0.00 0.00 2.10
324 325 3.076182 AGTGAGAGTGAGACCCCTTTAGA 59.924 47.826 0.00 0.00 0.00 2.10
325 326 3.436243 AGTGAGAGTGAGACCCCTTTAG 58.564 50.000 0.00 0.00 0.00 1.85
327 328 2.158234 AGAGTGAGAGTGAGACCCCTTT 60.158 50.000 0.00 0.00 0.00 3.11
328 329 1.431243 AGAGTGAGAGTGAGACCCCTT 59.569 52.381 0.00 0.00 0.00 3.95
329 330 1.080638 AGAGTGAGAGTGAGACCCCT 58.919 55.000 0.00 0.00 0.00 4.79
331 332 3.359695 AGTAGAGTGAGAGTGAGACCC 57.640 52.381 0.00 0.00 0.00 4.46
332 333 3.875134 GCTAGTAGAGTGAGAGTGAGACC 59.125 52.174 0.00 0.00 0.00 3.85
335 336 4.513442 ACTGCTAGTAGAGTGAGAGTGAG 58.487 47.826 15.37 0.00 0.00 3.51
337 338 5.238432 CCATACTGCTAGTAGAGTGAGAGTG 59.762 48.000 15.37 1.81 33.66 3.51
338 339 5.104277 ACCATACTGCTAGTAGAGTGAGAGT 60.104 44.000 15.37 3.97 33.66 3.24
339 340 5.373222 ACCATACTGCTAGTAGAGTGAGAG 58.627 45.833 15.37 3.44 33.66 3.20
341 342 6.292923 AGTACCATACTGCTAGTAGAGTGAG 58.707 44.000 15.37 8.75 37.69 3.51
343 344 8.344098 GTTTAGTACCATACTGCTAGTAGAGTG 58.656 40.741 15.37 11.60 39.81 3.51
345 346 8.680039 AGTTTAGTACCATACTGCTAGTAGAG 57.320 38.462 15.37 4.05 39.81 2.43
350 351 8.004087 TGGTAAGTTTAGTACCATACTGCTAG 57.996 38.462 0.00 0.00 44.84 3.42
360 361 6.376018 TGGCAAATGATGGTAAGTTTAGTACC 59.624 38.462 0.00 0.00 41.32 3.34
361 362 7.385778 TGGCAAATGATGGTAAGTTTAGTAC 57.614 36.000 0.00 0.00 0.00 2.73
363 364 6.627953 GCATGGCAAATGATGGTAAGTTTAGT 60.628 38.462 0.00 0.00 0.00 2.24
364 365 5.750067 GCATGGCAAATGATGGTAAGTTTAG 59.250 40.000 0.00 0.00 0.00 1.85
368 369 3.098377 TGCATGGCAAATGATGGTAAGT 58.902 40.909 0.00 0.00 34.76 2.24
369 370 3.804786 TGCATGGCAAATGATGGTAAG 57.195 42.857 0.00 0.00 34.76 2.34
371 372 3.568443 AGATGCATGGCAAATGATGGTA 58.432 40.909 2.46 0.00 43.62 3.25
372 373 2.394632 AGATGCATGGCAAATGATGGT 58.605 42.857 2.46 0.00 43.62 3.55
373 374 4.594123 TTAGATGCATGGCAAATGATGG 57.406 40.909 2.46 0.00 43.62 3.51
374 375 6.220201 TCATTTAGATGCATGGCAAATGATG 58.780 36.000 23.26 10.95 43.62 3.07
375 376 6.413783 TCATTTAGATGCATGGCAAATGAT 57.586 33.333 23.26 0.00 43.62 2.45
376 377 5.737922 GCTCATTTAGATGCATGGCAAATGA 60.738 40.000 24.38 24.38 43.62 2.57
377 378 4.447724 GCTCATTTAGATGCATGGCAAATG 59.552 41.667 20.79 20.79 43.62 2.32
378 379 4.502604 GGCTCATTTAGATGCATGGCAAAT 60.503 41.667 2.46 3.94 43.62 2.32
380 381 2.363038 GGCTCATTTAGATGCATGGCAA 59.637 45.455 2.46 0.00 43.62 4.52
381 382 1.958579 GGCTCATTTAGATGCATGGCA 59.041 47.619 2.46 0.00 44.86 4.92
383 384 5.311265 TCTAAGGCTCATTTAGATGCATGG 58.689 41.667 2.46 0.00 33.43 3.66
384 385 6.228995 TCTCTAAGGCTCATTTAGATGCATG 58.771 40.000 2.46 0.00 36.75 4.06
387 388 8.716909 GTTAATCTCTAAGGCTCATTTAGATGC 58.283 37.037 0.00 0.00 36.75 3.91
388 389 9.213799 GGTTAATCTCTAAGGCTCATTTAGATG 57.786 37.037 0.00 0.00 36.75 2.90
389 390 8.938883 TGGTTAATCTCTAAGGCTCATTTAGAT 58.061 33.333 0.00 0.00 36.75 1.98
390 391 8.319057 TGGTTAATCTCTAAGGCTCATTTAGA 57.681 34.615 0.00 0.00 36.15 2.10
391 392 8.424918 TCTGGTTAATCTCTAAGGCTCATTTAG 58.575 37.037 0.00 0.00 0.00 1.85
392 393 8.319057 TCTGGTTAATCTCTAAGGCTCATTTA 57.681 34.615 0.00 0.00 0.00 1.40
393 394 7.126421 TCTCTGGTTAATCTCTAAGGCTCATTT 59.874 37.037 0.00 0.00 0.00 2.32
394 395 6.613271 TCTCTGGTTAATCTCTAAGGCTCATT 59.387 38.462 0.00 0.00 0.00 2.57
396 397 5.519808 TCTCTGGTTAATCTCTAAGGCTCA 58.480 41.667 0.00 0.00 0.00 4.26
398 399 8.734593 ATAATCTCTGGTTAATCTCTAAGGCT 57.265 34.615 0.00 0.00 0.00 4.58
399 400 9.213799 CAATAATCTCTGGTTAATCTCTAAGGC 57.786 37.037 0.00 0.00 0.00 4.35
412 413 9.326489 TGCCTATATAAGACAATAATCTCTGGT 57.674 33.333 0.00 0.00 0.00 4.00
436 437 5.763204 TGTTAGTTTATAGCTGGGCTTATGC 59.237 40.000 0.00 0.00 40.44 3.14
437 438 7.986085 ATGTTAGTTTATAGCTGGGCTTATG 57.014 36.000 0.00 0.00 40.44 1.90
440 441 8.996651 AAATATGTTAGTTTATAGCTGGGCTT 57.003 30.769 0.00 0.00 40.44 4.35
481 2063 9.581289 TCCAAGGATAACATAGTTTTGAAAGAA 57.419 29.630 0.00 0.00 0.00 2.52
482 2064 9.581289 TTCCAAGGATAACATAGTTTTGAAAGA 57.419 29.630 0.00 0.00 0.00 2.52
485 2067 9.974980 GTTTTCCAAGGATAACATAGTTTTGAA 57.025 29.630 14.86 0.00 36.53 2.69
486 2068 9.362151 AGTTTTCCAAGGATAACATAGTTTTGA 57.638 29.630 19.78 0.00 38.12 2.69
513 2095 1.042229 TGGCAGCTCAGCATTTTTGT 58.958 45.000 0.00 0.00 35.83 2.83
521 2103 1.135286 GGTTGTATTTGGCAGCTCAGC 60.135 52.381 0.00 0.00 0.00 4.26
523 2105 2.161855 CAGGTTGTATTTGGCAGCTCA 58.838 47.619 0.00 0.00 0.00 4.26
607 2189 9.731819 CGAAGCAAAATAAGTGAGTCTATACTA 57.268 33.333 0.00 0.00 35.56 1.82
609 2191 8.408743 ACGAAGCAAAATAAGTGAGTCTATAC 57.591 34.615 0.00 0.00 0.00 1.47
616 2198 8.186178 ACTACATACGAAGCAAAATAAGTGAG 57.814 34.615 0.00 0.00 0.00 3.51
715 2309 2.746803 GGGATGTTACGTGCACGCC 61.747 63.158 37.35 27.43 44.43 5.68
738 2332 2.687200 ACCTGGGCGCACCTATCA 60.687 61.111 7.46 0.00 41.11 2.15
744 2338 3.660111 GTTGTGACCTGGGCGCAC 61.660 66.667 16.96 6.04 0.00 5.34
824 2423 1.021202 CGTGAAACCAAAGCAGACCA 58.979 50.000 0.00 0.00 0.00 4.02
928 2534 0.401738 TGGTTCAAGGGCTTCTGAGG 59.598 55.000 0.00 0.00 0.00 3.86
1014 2621 2.122954 ACACTCCCCAGACCCCTC 59.877 66.667 0.00 0.00 0.00 4.30
1016 2623 1.616628 ATCACACTCCCCAGACCCC 60.617 63.158 0.00 0.00 0.00 4.95
1025 2632 3.650139 AGTAAACACACGATCACACTCC 58.350 45.455 0.00 0.00 0.00 3.85
1031 2638 2.055838 GCACGAGTAAACACACGATCA 58.944 47.619 1.76 0.00 0.00 2.92
1065 2672 2.153645 TCTACATGTTGCACCTGCTTG 58.846 47.619 2.30 0.00 42.66 4.01
1066 2673 2.430465 CTCTACATGTTGCACCTGCTT 58.570 47.619 2.30 0.00 42.66 3.91
1078 2688 1.586422 CAATCCACGCCCTCTACATG 58.414 55.000 0.00 0.00 0.00 3.21
1079 2689 0.179045 GCAATCCACGCCCTCTACAT 60.179 55.000 0.00 0.00 0.00 2.29
1080 2690 1.220749 GCAATCCACGCCCTCTACA 59.779 57.895 0.00 0.00 0.00 2.74
1253 2863 7.830201 ACTATATGAGACGGAGGGAGTATAAAG 59.170 40.741 0.00 0.00 0.00 1.85
1268 2878 8.944029 TGAGCGGTAATTAGTACTATATGAGAC 58.056 37.037 2.79 0.00 32.80 3.36
1276 2887 7.812690 TCAGATTGAGCGGTAATTAGTACTA 57.187 36.000 0.00 0.00 32.80 1.82
1277 2888 6.710597 TCAGATTGAGCGGTAATTAGTACT 57.289 37.500 0.00 0.00 32.80 2.73
1278 2889 6.586844 GGATCAGATTGAGCGGTAATTAGTAC 59.413 42.308 0.00 0.00 32.73 2.73
1323 2934 6.391227 TGTCGCTCAATCAGATGTATCTAA 57.609 37.500 0.00 0.00 34.85 2.10
1326 2937 6.536731 AATTGTCGCTCAATCAGATGTATC 57.463 37.500 6.22 0.00 44.85 2.24
1359 2970 8.377034 GGGACAGAGAGAGTAGTATATACTTCA 58.623 40.741 20.21 0.87 37.73 3.02
1361 2972 8.277720 TGGGACAGAGAGAGTAGTATATACTT 57.722 38.462 20.21 3.71 37.73 2.24
1643 3451 5.506730 TTTACCTATGTTGACCATGACCA 57.493 39.130 0.00 0.00 34.86 4.02
1733 3541 4.440112 GGTGCCAAAGAAACATAGTATGCC 60.440 45.833 10.16 0.40 0.00 4.40
1747 3556 0.451783 GTTGATAGCCGGTGCCAAAG 59.548 55.000 1.90 0.00 38.69 2.77
1757 3566 5.016051 TCATCTCTTCACTGTTGATAGCC 57.984 43.478 0.00 0.00 0.00 3.93
1762 3571 6.166984 AGAGTTTCATCTCTTCACTGTTGA 57.833 37.500 0.00 0.00 41.36 3.18
1807 3619 5.310451 TCCCCTTACACAAACTATCACAAC 58.690 41.667 0.00 0.00 0.00 3.32
1820 3632 1.840635 AGGAGAGCATTCCCCTTACAC 59.159 52.381 3.13 0.00 38.02 2.90
1907 3719 0.937699 TTGAACACGAAGGCGAGACG 60.938 55.000 0.00 0.00 41.64 4.18
1934 3748 5.163152 GGTTTGGATACTCTCAATGGGATCT 60.163 44.000 0.00 0.00 37.61 2.75
1965 3779 3.117794 CACAAGCACATGAACAAACTGG 58.882 45.455 0.00 0.00 0.00 4.00
1975 3789 6.129378 CGAAAGAAAATACACACAAGCACATG 60.129 38.462 0.00 0.00 0.00 3.21
2020 3842 5.109500 TCCATAGGCAAATGACACATGTA 57.891 39.130 0.00 0.00 0.00 2.29
2022 3844 6.829229 ATATCCATAGGCAAATGACACATG 57.171 37.500 0.00 0.00 0.00 3.21
2023 3845 8.796475 GTTTATATCCATAGGCAAATGACACAT 58.204 33.333 1.79 0.00 0.00 3.21
2247 4837 5.617252 ACCGGTACCATAAATATCAACTGG 58.383 41.667 4.49 1.87 37.80 4.00
2266 4856 1.515521 GGCCAGACTTGTTTGACCGG 61.516 60.000 0.00 0.00 0.00 5.28
2284 4874 5.048713 GGCCGGTTTCATCTGAAATAATAGG 60.049 44.000 1.90 8.71 44.69 2.57
2342 4964 6.529829 GCATGTCCTTGTATATTTCGCAAAAA 59.470 34.615 0.00 0.00 0.00 1.94
2343 4965 6.033341 GCATGTCCTTGTATATTTCGCAAAA 58.967 36.000 0.00 0.00 0.00 2.44
2344 4966 5.356751 AGCATGTCCTTGTATATTTCGCAAA 59.643 36.000 0.00 0.00 0.00 3.68
2345 4967 4.881273 AGCATGTCCTTGTATATTTCGCAA 59.119 37.500 0.00 0.00 0.00 4.85
2346 4968 4.450976 AGCATGTCCTTGTATATTTCGCA 58.549 39.130 0.00 0.00 0.00 5.10
2347 4969 4.511454 TGAGCATGTCCTTGTATATTTCGC 59.489 41.667 0.00 0.00 0.00 4.70
2348 4970 6.791887 ATGAGCATGTCCTTGTATATTTCG 57.208 37.500 0.00 0.00 0.00 3.46
2349 4971 9.455847 GAAAATGAGCATGTCCTTGTATATTTC 57.544 33.333 0.00 0.00 0.00 2.17
2350 4972 9.193806 AGAAAATGAGCATGTCCTTGTATATTT 57.806 29.630 0.00 0.00 0.00 1.40
2351 4973 8.757982 AGAAAATGAGCATGTCCTTGTATATT 57.242 30.769 0.00 0.00 0.00 1.28
2352 4974 8.757982 AAGAAAATGAGCATGTCCTTGTATAT 57.242 30.769 0.00 0.00 0.00 0.86
2353 4975 8.579850 AAAGAAAATGAGCATGTCCTTGTATA 57.420 30.769 0.00 0.00 0.00 1.47
2354 4976 7.472334 AAAGAAAATGAGCATGTCCTTGTAT 57.528 32.000 0.00 0.00 0.00 2.29
2355 4977 6.899393 AAAGAAAATGAGCATGTCCTTGTA 57.101 33.333 0.00 0.00 0.00 2.41
2356 4978 5.796424 AAAGAAAATGAGCATGTCCTTGT 57.204 34.783 0.00 0.00 0.00 3.16
2401 5023 7.254795 GGCAGTTACTTCTATATGCGTTCAAAT 60.255 37.037 0.00 0.00 34.54 2.32
2661 5312 8.469125 GTGATGTAACTCGTTTTGACATTTTTC 58.531 33.333 0.00 0.00 31.03 2.29
2775 5428 6.039616 ACACATGTACTCGCAAATTTTGTTT 58.960 32.000 10.65 0.00 0.00 2.83
2776 5429 5.587289 ACACATGTACTCGCAAATTTTGTT 58.413 33.333 10.65 0.00 0.00 2.83
2777 5430 5.008613 AGACACATGTACTCGCAAATTTTGT 59.991 36.000 10.65 0.00 0.00 2.83
2778 5431 5.451908 AGACACATGTACTCGCAAATTTTG 58.548 37.500 0.00 4.72 0.00 2.44
2779 5432 5.689383 AGACACATGTACTCGCAAATTTT 57.311 34.783 0.00 0.00 0.00 1.82
2780 5433 5.238432 TCAAGACACATGTACTCGCAAATTT 59.762 36.000 0.00 0.00 0.00 1.82
2899 5556 6.803807 GTGGCATCATTTGTTTTCTACTCTTC 59.196 38.462 0.00 0.00 0.00 2.87
2963 5620 7.807977 AACAATGTATAATACTTCCTGGCAG 57.192 36.000 7.75 7.75 0.00 4.85
3057 5718 0.270699 TATGGTAGGCACCCATCCCT 59.729 55.000 10.76 0.00 45.11 4.20
3156 5817 5.826737 AGACTGCTCATTTAAATGATCTGGG 59.173 40.000 26.83 17.40 43.87 4.45
3157 5818 6.939132 AGACTGCTCATTTAAATGATCTGG 57.061 37.500 26.83 20.61 43.87 3.86
3161 5822 9.107177 CAGAGTTAGACTGCTCATTTAAATGAT 57.893 33.333 26.83 14.94 43.87 2.45
3334 5998 6.653320 CAGGCCTAGTAACAAGAACATTGTTA 59.347 38.462 3.98 8.67 42.10 2.41
3349 6013 1.825474 GCTCACTTGTCAGGCCTAGTA 59.175 52.381 3.98 0.00 0.00 1.82
3370 6034 8.795059 CATGAAATGCTAAAATTGACCGGCAAT 61.795 37.037 15.57 15.57 42.97 3.56
3387 6051 7.039882 ACAAATCTCAAATCTCCATGAAATGC 58.960 34.615 0.00 0.00 44.97 3.56
3500 6170 2.278142 GGCGGACAAATGATGCGC 60.278 61.111 0.00 0.00 39.06 6.09
3517 6187 4.399395 TCCCGCAAGAGGCAGCAG 62.399 66.667 0.00 0.00 45.17 4.24
3544 6214 7.512746 AGGGGAGTATACATCTTGCTATAAACA 59.487 37.037 5.50 0.00 0.00 2.83
3546 6216 7.093902 CGAGGGGAGTATACATCTTGCTATAAA 60.094 40.741 5.50 0.00 0.00 1.40
3550 6220 4.079970 CGAGGGGAGTATACATCTTGCTA 58.920 47.826 5.50 0.00 0.00 3.49
3554 6224 3.246416 AGCGAGGGGAGTATACATCTT 57.754 47.619 5.50 0.00 0.00 2.40
3585 6255 1.264749 TAGCGAATGAGTGGGCAGGT 61.265 55.000 0.00 0.00 0.00 4.00
3612 6282 1.506493 AGCGAACAAGAGAAGCACAG 58.494 50.000 0.00 0.00 0.00 3.66
3641 6321 9.952030 AGAAACAAATAAAAAGGAAGAAAACCA 57.048 25.926 0.00 0.00 0.00 3.67
3894 6576 7.424227 AAAATGTACGAGGTGTATCGAAAAA 57.576 32.000 2.78 0.00 45.56 1.94
3895 6577 7.385752 AGAAAAATGTACGAGGTGTATCGAAAA 59.614 33.333 2.78 0.00 45.56 2.29
3896 6578 6.869913 AGAAAAATGTACGAGGTGTATCGAAA 59.130 34.615 2.78 0.00 45.56 3.46
3897 6579 6.392354 AGAAAAATGTACGAGGTGTATCGAA 58.608 36.000 2.78 0.00 45.56 3.71
3898 6580 5.957798 AGAAAAATGTACGAGGTGTATCGA 58.042 37.500 2.78 0.00 45.56 3.59
3929 6611 9.737427 TGAAAATGTACACAAATAACGTTTCAT 57.263 25.926 5.91 0.00 32.60 2.57
3930 6612 9.227490 CTGAAAATGTACACAAATAACGTTTCA 57.773 29.630 5.91 0.00 32.60 2.69
3931 6613 9.228636 ACTGAAAATGTACACAAATAACGTTTC 57.771 29.630 5.91 0.00 32.60 2.78
4115 6801 3.058914 GTGTCTGGCACAAAGTACACATC 60.059 47.826 7.66 0.00 46.91 3.06
4116 6802 2.878406 GTGTCTGGCACAAAGTACACAT 59.122 45.455 7.66 0.00 46.91 3.21
4330 7022 2.836479 AAAGTGTGTGCGGTGTTAAC 57.164 45.000 0.00 0.00 0.00 2.01
4363 7057 8.274322 TGGTCTATGGAAAATGTAGACATCAAT 58.726 33.333 12.24 0.00 43.76 2.57
4652 7627 1.227853 ATCCACGGGCCTTAATCGC 60.228 57.895 0.84 0.00 0.00 4.58
4655 7630 1.807814 AGAGATCCACGGGCCTTAAT 58.192 50.000 0.84 0.00 0.00 1.40
4688 7663 1.001406 CTGAAGGAGACGATATGGGCC 59.999 57.143 0.00 0.00 0.00 5.80
4699 7674 5.952347 TGCTTAATAGTGAGACTGAAGGAGA 59.048 40.000 0.00 0.00 0.00 3.71
4786 7762 0.397254 GAAGATCCGAGGTCCTCCCA 60.397 60.000 13.54 0.00 34.66 4.37
4790 7766 2.534042 TCTTGAAGATCCGAGGTCCT 57.466 50.000 0.00 0.00 0.00 3.85
4807 7786 6.239064 GGTGTTGACGAGGAACATATAGATCT 60.239 42.308 0.00 0.00 35.81 2.75
4813 7792 5.670792 TTAGGTGTTGACGAGGAACATAT 57.329 39.130 0.00 0.00 35.81 1.78
4821 7800 3.770666 ACGATCATTAGGTGTTGACGAG 58.229 45.455 0.00 0.00 0.00 4.18
4830 7809 8.731275 TCACAAAATTATGACGATCATTAGGT 57.269 30.769 5.94 0.00 38.26 3.08
4863 7842 2.481952 CTGCCAAAAGAACGAGAGGAAG 59.518 50.000 0.00 0.00 0.00 3.46
4866 7845 1.532868 CACTGCCAAAAGAACGAGAGG 59.467 52.381 0.00 0.00 0.00 3.69
4882 7861 2.499289 ACTCTCTAACCTCATGGCACTG 59.501 50.000 0.00 0.00 36.63 3.66
4914 7893 9.285770 CATCATATCCAAATAATCAAATCTGCG 57.714 33.333 0.00 0.00 0.00 5.18
4930 7909 7.455638 TCCTCATCACATAACTCATCATATCCA 59.544 37.037 0.00 0.00 0.00 3.41
4962 7942 4.500127 GGCAATGGGTTTAACAATGGTAC 58.500 43.478 0.00 0.00 0.00 3.34
4974 7954 1.610379 GCAGAAGGGGCAATGGGTT 60.610 57.895 0.00 0.00 0.00 4.11
4980 7960 3.973973 AGTATGTATAGCAGAAGGGGCAA 59.026 43.478 0.00 0.00 0.00 4.52
4981 7961 3.324846 CAGTATGTATAGCAGAAGGGGCA 59.675 47.826 0.00 0.00 0.00 5.36
4988 7968 6.747414 AATTGGTCCAGTATGTATAGCAGA 57.253 37.500 0.00 0.00 0.00 4.26
5119 8099 3.267031 AGCTAGGCCCTTCATTTGTAAGT 59.733 43.478 0.00 0.00 0.00 2.24
5227 8213 3.963665 TGGCTTCAAAGTTGTGAAATCG 58.036 40.909 0.00 0.00 37.08 3.34
5387 8410 6.131264 TCCCATACATACGGACTCTAAAAGA 58.869 40.000 0.00 0.00 0.00 2.52
5388 8411 6.401047 TCCCATACATACGGACTCTAAAAG 57.599 41.667 0.00 0.00 0.00 2.27
5411 8434 7.175990 TCTGAAACCAACACTTAACTCTGTTTT 59.824 33.333 0.00 0.00 0.00 2.43
5449 8472 5.443283 CTGTATATATGGAGTAGGGCCGTA 58.557 45.833 0.00 0.00 0.00 4.02
5451 8474 3.068307 GCTGTATATATGGAGTAGGGCCG 59.932 52.174 0.00 0.00 0.00 6.13
5453 8485 3.388350 GGGCTGTATATATGGAGTAGGGC 59.612 52.174 0.00 0.00 0.00 5.19
5485 8552 9.811995 AATCTAAACAAAACCAAAGTCTAAACC 57.188 29.630 0.00 0.00 0.00 3.27
5519 8590 5.881447 AGTACGTGAAGTTACAGCTATGAG 58.119 41.667 0.00 0.00 0.00 2.90
5634 8835 6.431198 ACGAAGAACAAGCAAGAAACTAAA 57.569 33.333 0.00 0.00 0.00 1.85
5661 9602 4.564821 CCACGAGGGTCTATTTCCTTCAAA 60.565 45.833 0.00 0.00 32.74 2.69
5771 10809 3.543680 AGTGGATTTTGACGATCCGAT 57.456 42.857 0.00 0.00 44.91 4.18
5785 10823 7.812669 GTGATTATCGTTTTTGGAAAAGTGGAT 59.187 33.333 0.00 0.00 0.00 3.41
5788 10826 6.920758 TGGTGATTATCGTTTTTGGAAAAGTG 59.079 34.615 0.00 0.00 0.00 3.16
5793 10831 6.657117 TGAGATGGTGATTATCGTTTTTGGAA 59.343 34.615 0.00 0.00 0.00 3.53
5797 10837 6.761242 TCGATGAGATGGTGATTATCGTTTTT 59.239 34.615 0.00 0.00 38.68 1.94
5829 10871 3.418684 AACGATAGAGGCAAAGGTGTT 57.581 42.857 0.00 0.00 41.38 3.32
5902 10947 5.875224 TCTTCACCATGGTGTTGATAAAGA 58.125 37.500 37.49 32.08 45.55 2.52
5939 10985 2.599408 TCCCCTAGAAGTATAGGCCG 57.401 55.000 0.00 0.00 41.00 6.13
5943 10989 5.896678 CCAGGATGATCCCCTAGAAGTATAG 59.103 48.000 8.08 0.00 39.69 1.31
5945 10991 4.693420 CCAGGATGATCCCCTAGAAGTAT 58.307 47.826 8.08 0.00 39.69 2.12
5946 10992 3.758787 GCCAGGATGATCCCCTAGAAGTA 60.759 52.174 8.08 0.00 39.69 2.24
5954 11000 2.363292 CTTGGGCCAGGATGATCCCC 62.363 65.000 10.68 2.54 44.62 4.81
5965 11011 1.549620 TCGATAAACGTACTTGGGCCA 59.450 47.619 0.00 0.00 43.13 5.36
5973 11019 6.256321 TGGAAAGCCTTAATCGATAAACGTAC 59.744 38.462 0.00 0.00 37.96 3.67
5980 11026 8.519799 AAAAAGATGGAAAGCCTTAATCGATA 57.480 30.769 0.00 0.00 34.31 2.92
5999 11045 1.280710 TGAGCCGCCCATCTAAAAAGA 59.719 47.619 0.00 0.00 0.00 2.52
6015 11061 1.851658 TTTTTGAAAGCGCCTTGAGC 58.148 45.000 2.29 0.00 38.52 4.26
6029 11075 9.941991 CACGAACTTTAGCAATAATGATTTTTG 57.058 29.630 4.31 4.31 0.00 2.44
6035 11081 6.816640 AGCTACACGAACTTTAGCAATAATGA 59.183 34.615 0.00 0.00 40.67 2.57
6044 11090 5.921408 ACTCTTTCAGCTACACGAACTTTAG 59.079 40.000 0.00 0.00 0.00 1.85
6049 11095 3.425858 GTCACTCTTTCAGCTACACGAAC 59.574 47.826 0.00 0.00 0.00 3.95
6053 11099 3.717707 TGTGTCACTCTTTCAGCTACAC 58.282 45.455 4.27 4.10 39.74 2.90
6059 11105 6.703607 AGAGTAACAATGTGTCACTCTTTCAG 59.296 38.462 15.50 0.00 42.46 3.02
6073 11119 8.015658 GGTTGCAACTAAACTAGAGTAACAATG 58.984 37.037 27.64 0.00 34.55 2.82
6074 11120 7.937394 AGGTTGCAACTAAACTAGAGTAACAAT 59.063 33.333 27.64 0.00 34.55 2.71
6075 11121 7.277396 AGGTTGCAACTAAACTAGAGTAACAA 58.723 34.615 27.64 0.00 34.55 2.83
6077 11123 7.153315 AGAGGTTGCAACTAAACTAGAGTAAC 58.847 38.462 27.64 7.03 33.35 2.50
6080 11127 5.540719 AGAGAGGTTGCAACTAAACTAGAGT 59.459 40.000 27.64 3.78 0.00 3.24
6088 11135 5.778750 ACTTAGGTAGAGAGGTTGCAACTAA 59.221 40.000 27.64 14.07 0.00 2.24
6091 11138 4.221041 AGACTTAGGTAGAGAGGTTGCAAC 59.779 45.833 21.59 21.59 0.00 4.17
6103 11150 9.179909 TGAAGAAATACTCAGAGACTTAGGTAG 57.820 37.037 3.79 0.00 0.00 3.18
6132 11180 8.328758 ACACCTTCTTCATGGTATCAATCTTTA 58.671 33.333 0.00 0.00 34.79 1.85
6133 11181 7.177878 ACACCTTCTTCATGGTATCAATCTTT 58.822 34.615 0.00 0.00 34.79 2.52
6134 11182 6.725364 ACACCTTCTTCATGGTATCAATCTT 58.275 36.000 0.00 0.00 34.79 2.40
6135 11183 6.319048 ACACCTTCTTCATGGTATCAATCT 57.681 37.500 0.00 0.00 34.79 2.40
6136 11184 7.396540 AAACACCTTCTTCATGGTATCAATC 57.603 36.000 0.00 0.00 34.79 2.67
6137 11185 7.888021 TGTAAACACCTTCTTCATGGTATCAAT 59.112 33.333 0.00 0.00 34.79 2.57
6138 11186 7.227873 TGTAAACACCTTCTTCATGGTATCAA 58.772 34.615 0.00 0.00 34.79 2.57
6139 11187 6.774673 TGTAAACACCTTCTTCATGGTATCA 58.225 36.000 0.00 0.00 34.79 2.15
6140 11188 7.606456 TCTTGTAAACACCTTCTTCATGGTATC 59.394 37.037 0.00 0.00 34.79 2.24
6141 11189 7.458397 TCTTGTAAACACCTTCTTCATGGTAT 58.542 34.615 0.00 0.00 34.79 2.73
6142 11190 6.833041 TCTTGTAAACACCTTCTTCATGGTA 58.167 36.000 0.00 0.00 34.79 3.25
6143 11191 5.690865 TCTTGTAAACACCTTCTTCATGGT 58.309 37.500 0.00 0.00 36.96 3.55
6144 11192 6.824305 ATCTTGTAAACACCTTCTTCATGG 57.176 37.500 0.00 0.00 0.00 3.66
6147 11195 9.567776 TGAAATATCTTGTAAACACCTTCTTCA 57.432 29.630 0.00 0.00 0.00 3.02
6206 11254 9.745018 ACTGATTTGGATCTAAGATCAAGAAAA 57.255 29.630 13.48 0.00 33.28 2.29
6207 11255 9.170734 CACTGATTTGGATCTAAGATCAAGAAA 57.829 33.333 13.48 0.00 33.28 2.52
6208 11256 8.324306 ACACTGATTTGGATCTAAGATCAAGAA 58.676 33.333 13.48 0.00 33.28 2.52
6209 11257 7.767659 CACACTGATTTGGATCTAAGATCAAGA 59.232 37.037 13.48 0.00 33.28 3.02
6210 11258 7.551974 ACACACTGATTTGGATCTAAGATCAAG 59.448 37.037 13.48 11.92 33.28 3.02
6211 11259 7.397221 ACACACTGATTTGGATCTAAGATCAA 58.603 34.615 13.48 0.00 33.28 2.57
6212 11260 6.950842 ACACACTGATTTGGATCTAAGATCA 58.049 36.000 12.54 12.54 33.28 2.92
6213 11261 7.335422 ACAACACACTGATTTGGATCTAAGATC 59.665 37.037 0.00 0.00 33.28 2.75
6214 11262 7.170965 ACAACACACTGATTTGGATCTAAGAT 58.829 34.615 0.00 0.00 33.28 2.40
6215 11263 6.533730 ACAACACACTGATTTGGATCTAAGA 58.466 36.000 0.00 0.00 33.28 2.10
6216 11264 6.808008 ACAACACACTGATTTGGATCTAAG 57.192 37.500 0.00 0.00 33.28 2.18
6217 11265 8.862325 ATTACAACACACTGATTTGGATCTAA 57.138 30.769 0.00 0.00 33.28 2.10
6218 11266 8.729756 CAATTACAACACACTGATTTGGATCTA 58.270 33.333 0.00 0.00 33.28 1.98
6219 11267 7.231317 ACAATTACAACACACTGATTTGGATCT 59.769 33.333 0.00 0.00 33.28 2.75
6220 11268 7.370383 ACAATTACAACACACTGATTTGGATC 58.630 34.615 0.00 0.00 0.00 3.36
6228 11276 6.484977 TGCTCATAACAATTACAACACACTGA 59.515 34.615 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.