Multiple sequence alignment - TraesCS1A01G397300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G397300 chr1A 100.000 2969 0 0 1 2969 563160071 563163039 0.000000e+00 5483.0
1 TraesCS1A01G397300 chr1D 95.015 2307 83 18 3 2300 469832649 469834932 0.000000e+00 3594.0
2 TraesCS1A01G397300 chr1D 90.780 282 16 7 2685 2964 469835534 469835807 4.680000e-98 368.0
3 TraesCS1A01G397300 chr1D 87.838 148 15 3 2515 2660 469835215 469835361 1.420000e-38 171.0
4 TraesCS1A01G397300 chr1B 94.466 2277 85 20 1 2254 651542488 651544746 0.000000e+00 3469.0
5 TraesCS1A01G397300 chr1B 77.892 389 47 18 2309 2660 651544944 651545330 3.880000e-49 206.0
6 TraesCS1A01G397300 chr1B 89.333 75 6 2 2685 2757 651548797 651548871 3.150000e-15 93.5
7 TraesCS1A01G397300 chr5A 83.544 79 11 2 1883 1960 478857848 478857925 4.110000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G397300 chr1A 563160071 563163039 2968 False 5483.000000 5483 100.000000 1 2969 1 chr1A.!!$F1 2968
1 TraesCS1A01G397300 chr1D 469832649 469835807 3158 False 1377.666667 3594 91.211000 3 2964 3 chr1D.!!$F1 2961
2 TraesCS1A01G397300 chr1B 651542488 651548871 6383 False 1256.166667 3469 87.230333 1 2757 3 chr1B.!!$F1 2756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 982 0.599558 TTTGTGCAGCTTCAGCATCC 59.4 50.0 0.03 0.0 44.79 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 2906 0.034896 GGGTTCGACTTGAGCCTTCA 59.965 55.0 0.0 0.0 46.55 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.500375 GCTCTTTGCTGAATCCTTTTGTGT 60.500 41.667 0.00 0.00 38.95 3.72
73 74 3.819245 CCTGGGTGGTTCTTGTTGA 57.181 52.632 0.00 0.00 0.00 3.18
76 77 2.654863 CTGGGTGGTTCTTGTTGAAGT 58.345 47.619 0.00 0.00 35.01 3.01
117 118 5.014333 TGTTTAGTGGAGCTTGGGGTTTATA 59.986 40.000 0.00 0.00 0.00 0.98
158 160 5.308825 ACTGGATTACAAGAGGTTTGTGAG 58.691 41.667 2.98 0.00 34.11 3.51
165 167 3.815401 ACAAGAGGTTTGTGAGCATGTAC 59.185 43.478 0.00 0.00 0.00 2.90
201 203 7.716560 TGCTCTAAATTATGTGTGCATCTATGT 59.283 33.333 0.00 0.00 36.58 2.29
219 221 2.828877 TGTCGTTCTGGTTGGTACTTG 58.171 47.619 0.00 0.00 0.00 3.16
468 471 3.261897 TGGGAGGAACACTTCATCTCTTC 59.738 47.826 0.00 0.00 41.35 2.87
513 516 5.347620 ACGGTGTGCAGATTTATAGGTTA 57.652 39.130 0.00 0.00 0.00 2.85
776 779 2.540383 ACATAGGTCTTGTGAGCCTGA 58.460 47.619 0.00 0.00 41.26 3.86
897 900 5.387113 TGCCAGAGAACCCAATAATGTAT 57.613 39.130 0.00 0.00 0.00 2.29
926 929 9.897744 TTTAAGCACATAGATTCTTTTGTTCTG 57.102 29.630 0.00 0.00 0.00 3.02
979 982 0.599558 TTTGTGCAGCTTCAGCATCC 59.400 50.000 0.03 0.00 44.79 3.51
1134 1137 2.961768 CCAACCACATCGCCAACC 59.038 61.111 0.00 0.00 0.00 3.77
1311 1314 2.291465 CCTGAATGTGTGTGACAACCTG 59.709 50.000 0.00 0.00 38.36 4.00
1356 1359 1.577736 ATGTCCAGTTCAGGGAGGAG 58.422 55.000 0.00 0.00 34.44 3.69
1413 1416 0.321298 GCTTTTACTCTGGTCGCCCA 60.321 55.000 0.00 0.00 38.87 5.36
1431 1434 3.370953 GCCCAATCATTGTGGAGTACTCT 60.371 47.826 21.88 0.00 38.54 3.24
1530 1533 1.154150 GCACGTGAAGCAGATTGGC 60.154 57.895 22.23 0.00 0.00 4.52
1557 1560 2.235898 GCTCAGGAGGAAGCTATATGGG 59.764 54.545 0.00 0.00 0.00 4.00
1726 1735 1.198759 AGGTGATGGTGGCGGTTACT 61.199 55.000 0.00 0.00 0.00 2.24
1767 1779 4.489771 CGTGGAGGTGATGGGGGC 62.490 72.222 0.00 0.00 0.00 5.80
1785 1797 2.513897 GGCTATCGTGGTGGTGGC 60.514 66.667 0.00 0.00 0.00 5.01
1788 1800 4.460683 TATCGTGGTGGTGGCGGC 62.461 66.667 0.00 0.00 0.00 6.53
1833 1848 2.043652 GGTGGTGGCAGGCATGAT 60.044 61.111 0.62 0.00 0.00 2.45
1954 1969 1.666011 GAGCAGTGGAACCGTGAGA 59.334 57.895 0.00 0.00 37.80 3.27
1966 1981 0.323908 CCGTGAGAGGGAGGAGAAGT 60.324 60.000 0.00 0.00 0.00 3.01
1967 1982 0.814457 CGTGAGAGGGAGGAGAAGTG 59.186 60.000 0.00 0.00 0.00 3.16
1968 1983 1.614583 CGTGAGAGGGAGGAGAAGTGA 60.615 57.143 0.00 0.00 0.00 3.41
1999 2017 1.373748 TAGTGGAACCGCAAGCGTC 60.374 57.895 13.80 5.16 37.80 5.19
2001 2019 2.031919 TGGAACCGCAAGCGTCAT 59.968 55.556 13.80 0.00 37.81 3.06
2046 2064 4.929808 CGTTAGTTTGCTCCTATGTTGAGT 59.070 41.667 0.00 0.00 32.31 3.41
2047 2065 6.071784 TCGTTAGTTTGCTCCTATGTTGAGTA 60.072 38.462 0.00 0.00 32.31 2.59
2052 2070 5.939764 TTGCTCCTATGTTGAGTATCTGT 57.060 39.130 0.00 0.00 34.92 3.41
2061 2079 3.568007 TGTTGAGTATCTGTTGGTTTGCC 59.432 43.478 0.00 0.00 34.92 4.52
2088 2108 6.719829 TCAGACATTAGTGTGGGTCGATATAT 59.280 38.462 0.00 0.00 39.36 0.86
2098 2118 6.534079 GTGTGGGTCGATATATTACTATTGCC 59.466 42.308 0.00 0.00 0.00 4.52
2100 2120 7.038587 TGTGGGTCGATATATTACTATTGCCTT 60.039 37.037 0.00 0.00 0.00 4.35
2133 2153 4.573900 CTGTCAAGTGCAGGATTCTAGTT 58.426 43.478 0.00 0.00 0.00 2.24
2161 2181 2.672874 TGTAAGCTGCTATTTGTGCTCG 59.327 45.455 0.90 0.00 34.38 5.03
2281 2424 5.655488 AGAACATCTATCTTCTGTTGTCGG 58.345 41.667 0.00 0.00 33.46 4.79
2305 2448 6.403636 GGCCATATAGTAAGCCATTTTCGATG 60.404 42.308 0.00 0.00 45.07 3.84
2307 2450 7.308589 GCCATATAGTAAGCCATTTTCGATGTT 60.309 37.037 0.00 0.00 0.00 2.71
2321 2510 5.432885 TTCGATGTTTTCTTTCCTGGAAC 57.567 39.130 9.04 0.00 0.00 3.62
2322 2511 3.496884 TCGATGTTTTCTTTCCTGGAACG 59.503 43.478 9.04 7.69 0.00 3.95
2368 2573 1.657822 TGAAATACGCGGCAGCATAA 58.342 45.000 12.47 0.00 45.49 1.90
2400 2605 0.593128 CAGGGCGAAGTTTGAACAGG 59.407 55.000 0.00 0.00 0.00 4.00
2404 2609 0.875059 GCGAAGTTTGAACAGGGGAG 59.125 55.000 0.00 0.00 0.00 4.30
2429 2634 0.472471 AGCGGGAGGAAACAAAGTGA 59.528 50.000 0.00 0.00 0.00 3.41
2442 2652 5.736951 AACAAAGTGATCTCTCTACTGCT 57.263 39.130 0.00 0.00 0.00 4.24
2443 2653 5.070770 ACAAAGTGATCTCTCTACTGCTG 57.929 43.478 0.00 0.00 0.00 4.41
2451 2661 1.405105 CTCTCTACTGCTGCTCCACTC 59.595 57.143 0.00 0.00 0.00 3.51
2452 2662 1.005332 TCTCTACTGCTGCTCCACTCT 59.995 52.381 0.00 0.00 0.00 3.24
2460 2670 1.517242 CTGCTCCACTCTGTTTGGTC 58.483 55.000 0.00 0.00 35.42 4.02
2469 2710 1.986378 CTCTGTTTGGTCGTGTCGATC 59.014 52.381 0.00 0.00 38.42 3.69
2471 2712 1.279527 TGTTTGGTCGTGTCGATCGC 61.280 55.000 11.09 6.41 40.17 4.58
2517 2840 4.770531 TGTCAGGTGCACAGTAGTAGTATT 59.229 41.667 20.43 0.00 0.00 1.89
2519 2842 6.164176 GTCAGGTGCACAGTAGTAGTATTTT 58.836 40.000 20.43 0.00 0.00 1.82
2520 2843 6.310711 GTCAGGTGCACAGTAGTAGTATTTTC 59.689 42.308 20.43 0.00 0.00 2.29
2521 2844 6.210784 TCAGGTGCACAGTAGTAGTATTTTCT 59.789 38.462 20.43 0.00 0.00 2.52
2522 2845 7.395206 TCAGGTGCACAGTAGTAGTATTTTCTA 59.605 37.037 20.43 0.00 0.00 2.10
2523 2846 8.033038 CAGGTGCACAGTAGTAGTATTTTCTAA 58.967 37.037 20.43 0.00 0.00 2.10
2524 2847 8.251721 AGGTGCACAGTAGTAGTATTTTCTAAG 58.748 37.037 20.43 0.00 0.00 2.18
2525 2848 8.033626 GGTGCACAGTAGTAGTATTTTCTAAGT 58.966 37.037 20.43 0.00 0.00 2.24
2563 2886 8.522830 CATCTGTTTTACTGTAATTTCCCACAT 58.477 33.333 0.37 0.00 0.00 3.21
2564 2887 8.472007 TCTGTTTTACTGTAATTTCCCACATT 57.528 30.769 0.37 0.00 0.00 2.71
2565 2888 8.919145 TCTGTTTTACTGTAATTTCCCACATTT 58.081 29.630 0.37 0.00 0.00 2.32
2599 2922 3.685139 AGAATGAAGGCTCAAGTCGAA 57.315 42.857 0.00 0.00 34.49 3.71
2632 2955 1.202710 TCAACAAAGCTAGCAACCGGA 60.203 47.619 18.83 4.22 0.00 5.14
2660 2983 1.603802 ACAGCATCAACCACAAGAACG 59.396 47.619 0.00 0.00 0.00 3.95
2661 2984 1.603802 CAGCATCAACCACAAGAACGT 59.396 47.619 0.00 0.00 0.00 3.99
2662 2985 1.873591 AGCATCAACCACAAGAACGTC 59.126 47.619 0.00 0.00 0.00 4.34
2673 3112 4.320202 CCACAAGAACGTCCTGTAAATTGG 60.320 45.833 0.00 0.00 0.00 3.16
2678 3117 5.235516 AGAACGTCCTGTAAATTGGTGTAG 58.764 41.667 0.00 0.00 0.00 2.74
2687 6452 5.931294 TGTAAATTGGTGTAGACTGGAACA 58.069 37.500 0.00 0.00 0.00 3.18
2757 6524 2.223572 CCATCCATTGCCGAGCTAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
2766 6533 1.134907 CCGAGCTAAAACCCGCTAAGA 60.135 52.381 0.00 0.00 36.45 2.10
2774 6541 6.602009 AGCTAAAACCCGCTAAGAACATAATT 59.398 34.615 0.00 0.00 34.11 1.40
2895 6662 8.602472 TCTTTATACCCCTTGTTGCATATTTT 57.398 30.769 0.00 0.00 0.00 1.82
2896 6663 8.474025 TCTTTATACCCCTTGTTGCATATTTTG 58.526 33.333 0.00 0.00 0.00 2.44
2898 6665 4.270245 ACCCCTTGTTGCATATTTTGTG 57.730 40.909 0.00 0.00 0.00 3.33
2899 6666 3.007831 ACCCCTTGTTGCATATTTTGTGG 59.992 43.478 0.00 0.00 0.00 4.17
2900 6667 3.002102 CCCTTGTTGCATATTTTGTGGC 58.998 45.455 0.00 0.00 0.00 5.01
2901 6668 3.306919 CCCTTGTTGCATATTTTGTGGCT 60.307 43.478 0.00 0.00 0.00 4.75
2902 6669 4.081752 CCCTTGTTGCATATTTTGTGGCTA 60.082 41.667 0.00 0.00 0.00 3.93
2904 6671 6.108015 CCTTGTTGCATATTTTGTGGCTAAT 58.892 36.000 0.00 0.00 0.00 1.73
2905 6672 6.594937 CCTTGTTGCATATTTTGTGGCTAATT 59.405 34.615 0.00 0.00 0.00 1.40
2906 6673 7.119553 CCTTGTTGCATATTTTGTGGCTAATTT 59.880 33.333 0.00 0.00 0.00 1.82
2949 6716 2.320587 GCACAACTGAGCGGAGTGG 61.321 63.158 0.00 0.00 0.00 4.00
2958 6725 1.751351 TGAGCGGAGTGGATCAGTTAG 59.249 52.381 0.00 0.00 0.00 2.34
2964 6731 4.759782 CGGAGTGGATCAGTTAGTGAATT 58.240 43.478 0.00 0.00 39.19 2.17
2965 6732 4.568359 CGGAGTGGATCAGTTAGTGAATTG 59.432 45.833 0.00 0.00 39.19 2.32
2966 6733 5.491982 GGAGTGGATCAGTTAGTGAATTGT 58.508 41.667 0.00 0.00 39.19 2.71
2967 6734 5.582665 GGAGTGGATCAGTTAGTGAATTGTC 59.417 44.000 0.00 0.00 39.19 3.18
2968 6735 5.171476 AGTGGATCAGTTAGTGAATTGTCG 58.829 41.667 0.00 0.00 39.19 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.878406 GTCAAACAAGCACTTCTAGCCA 59.122 45.455 0.00 0.00 0.00 4.75
69 70 3.439129 GGCCACTGGTATACAACTTCAAC 59.561 47.826 5.01 0.00 0.00 3.18
70 71 3.329520 AGGCCACTGGTATACAACTTCAA 59.670 43.478 5.01 0.00 0.00 2.69
71 72 2.910319 AGGCCACTGGTATACAACTTCA 59.090 45.455 5.01 0.00 0.00 3.02
72 73 3.629142 AGGCCACTGGTATACAACTTC 57.371 47.619 5.01 0.00 0.00 3.01
73 74 3.073946 ACAAGGCCACTGGTATACAACTT 59.926 43.478 5.01 0.00 0.00 2.66
76 77 3.799432 AACAAGGCCACTGGTATACAA 57.201 42.857 5.01 0.00 28.24 2.41
117 118 8.706322 AATCCAGTAAAAGGTGTGTCTAAATT 57.294 30.769 0.00 0.00 0.00 1.82
158 160 1.712081 CAGACTGCTGCGTACATGC 59.288 57.895 0.00 0.00 34.95 4.06
201 203 3.547054 AACAAGTACCAACCAGAACGA 57.453 42.857 0.00 0.00 0.00 3.85
219 221 4.994220 ACAACCCGAAACAAACAAAAAC 57.006 36.364 0.00 0.00 0.00 2.43
468 471 6.928820 GTTGAAAACGGTTAAACCAGAAATG 58.071 36.000 0.00 0.00 38.47 2.32
521 524 5.647658 AGATCTGCTCCTAGTAATCTGATCG 59.352 44.000 0.00 0.00 37.27 3.69
528 531 6.044989 TCAGGACTAGATCTGCTCCTAGTAAT 59.955 42.308 18.23 0.00 43.86 1.89
776 779 9.588096 GAAGGGAACATATAGGATTAAACCAAT 57.412 33.333 4.40 0.00 0.00 3.16
926 929 7.565323 AGAACAGCATCAGAAATTCTTATCC 57.435 36.000 0.00 0.00 0.00 2.59
979 982 2.575532 TGTTTTGGGAGCACTTCAGAG 58.424 47.619 0.00 0.00 0.00 3.35
1134 1137 4.082841 TGGTACATGTTAGCAAGCACAATG 60.083 41.667 2.30 0.00 0.00 2.82
1311 1314 1.524621 CCCGATCATGTGGTCAGCC 60.525 63.158 0.00 0.00 0.00 4.85
1530 1533 1.970352 GCTTCCTCCTGAGCTCCCTG 61.970 65.000 12.15 1.22 0.00 4.45
1563 1566 3.775654 CCGTGGCTCCTCCTGGAC 61.776 72.222 0.00 0.00 37.46 4.02
1596 1599 2.433446 CTCCTGTGCTGTGGGCTT 59.567 61.111 0.00 0.00 42.39 4.35
1767 1779 2.202878 CCACCACCACGATAGCCG 60.203 66.667 0.00 0.00 45.44 5.52
1833 1848 3.431415 CCTCGGTCCATCATCATACCTA 58.569 50.000 0.00 0.00 0.00 3.08
1899 1914 0.397941 CCTCACTGTTCTCCCTTGCA 59.602 55.000 0.00 0.00 0.00 4.08
1954 1969 2.573915 GGTTTCATCACTTCTCCTCCCT 59.426 50.000 0.00 0.00 0.00 4.20
1966 1981 1.403647 CCACTACTCGCGGTTTCATCA 60.404 52.381 6.13 0.00 0.00 3.07
1967 1982 1.135199 TCCACTACTCGCGGTTTCATC 60.135 52.381 6.13 0.00 0.00 2.92
1968 1983 0.892755 TCCACTACTCGCGGTTTCAT 59.107 50.000 6.13 0.00 0.00 2.57
1999 2017 7.647715 ACGACACAAGAATGAAAAGGTAAAATG 59.352 33.333 0.00 0.00 0.00 2.32
2001 2019 7.090953 ACGACACAAGAATGAAAAGGTAAAA 57.909 32.000 0.00 0.00 0.00 1.52
2046 2064 2.037902 TCTGACGGCAAACCAACAGATA 59.962 45.455 0.00 0.00 40.49 1.98
2047 2065 1.202758 TCTGACGGCAAACCAACAGAT 60.203 47.619 0.00 0.00 40.49 2.90
2052 2070 1.686355 AATGTCTGACGGCAAACCAA 58.314 45.000 0.00 0.00 34.57 3.67
2061 2079 2.607187 GACCCACACTAATGTCTGACG 58.393 52.381 2.98 0.00 36.72 4.35
2088 2108 5.001232 GGTCACTCAACAAGGCAATAGTAA 58.999 41.667 0.00 0.00 0.00 2.24
2098 2118 3.310774 CACTTGACAGGTCACTCAACAAG 59.689 47.826 0.77 0.00 39.66 3.16
2100 2120 2.905075 CACTTGACAGGTCACTCAACA 58.095 47.619 0.77 0.00 39.66 3.33
2131 2151 0.951040 AGCAGCTTACACGCCTCAAC 60.951 55.000 0.00 0.00 0.00 3.18
2133 2153 0.824109 ATAGCAGCTTACACGCCTCA 59.176 50.000 0.00 0.00 0.00 3.86
2161 2181 9.593134 AATACGAGAATCCTGCAGATAAATATC 57.407 33.333 17.39 3.55 33.66 1.63
2259 2402 4.268884 GCCGACAACAGAAGATAGATGTTC 59.731 45.833 0.00 0.00 35.04 3.18
2281 2424 6.149474 ACATCGAAAATGGCTTACTATATGGC 59.851 38.462 0.00 0.00 0.00 4.40
2305 2448 3.113322 GTTGCGTTCCAGGAAAGAAAAC 58.887 45.455 18.52 15.97 0.00 2.43
2307 2450 1.332375 CGTTGCGTTCCAGGAAAGAAA 59.668 47.619 18.52 11.70 0.00 2.52
2330 2521 4.445452 TCATCTTGAAATTGGCTCTTGC 57.555 40.909 0.00 0.00 38.76 4.01
2368 2573 3.305516 CCCTGCGCTTTTGCCCTT 61.306 61.111 9.73 0.00 43.93 3.95
2429 2634 2.031120 GTGGAGCAGCAGTAGAGAGAT 58.969 52.381 0.00 0.00 0.00 2.75
2442 2652 0.249868 CGACCAAACAGAGTGGAGCA 60.250 55.000 0.00 0.00 39.62 4.26
2443 2653 0.249911 ACGACCAAACAGAGTGGAGC 60.250 55.000 0.00 0.00 39.62 4.70
2451 2661 0.708370 CGATCGACACGACCAAACAG 59.292 55.000 10.26 0.00 39.18 3.16
2452 2662 1.279527 GCGATCGACACGACCAAACA 61.280 55.000 21.57 0.00 39.18 2.83
2460 2670 1.924408 GCAATATTGCGATCGACACG 58.076 50.000 23.77 9.07 45.11 4.49
2498 2739 6.607004 AGAAAATACTACTACTGTGCACCT 57.393 37.500 15.69 1.40 0.00 4.00
2517 2840 9.132923 ACAGATGACGGATATTCTACTTAGAAA 57.867 33.333 2.85 0.00 44.63 2.52
2519 2842 8.693120 AACAGATGACGGATATTCTACTTAGA 57.307 34.615 0.00 0.00 0.00 2.10
2520 2843 9.751542 AAAACAGATGACGGATATTCTACTTAG 57.248 33.333 0.00 0.00 0.00 2.18
2522 2845 9.530633 GTAAAACAGATGACGGATATTCTACTT 57.469 33.333 0.00 0.00 0.00 2.24
2523 2846 8.915036 AGTAAAACAGATGACGGATATTCTACT 58.085 33.333 0.00 0.00 0.00 2.57
2524 2847 8.969267 CAGTAAAACAGATGACGGATATTCTAC 58.031 37.037 0.00 0.00 0.00 2.59
2525 2848 8.692710 ACAGTAAAACAGATGACGGATATTCTA 58.307 33.333 0.00 0.00 0.00 2.10
2526 2849 7.556844 ACAGTAAAACAGATGACGGATATTCT 58.443 34.615 0.00 0.00 0.00 2.40
2527 2850 7.772332 ACAGTAAAACAGATGACGGATATTC 57.228 36.000 0.00 0.00 0.00 1.75
2528 2851 9.832445 ATTACAGTAAAACAGATGACGGATATT 57.168 29.630 0.00 0.00 0.00 1.28
2529 2852 9.832445 AATTACAGTAAAACAGATGACGGATAT 57.168 29.630 0.00 0.00 0.00 1.63
2530 2853 9.661563 AAATTACAGTAAAACAGATGACGGATA 57.338 29.630 0.00 0.00 0.00 2.59
2531 2854 8.561738 AAATTACAGTAAAACAGATGACGGAT 57.438 30.769 0.00 0.00 0.00 4.18
2532 2855 7.118680 GGAAATTACAGTAAAACAGATGACGGA 59.881 37.037 0.00 0.00 0.00 4.69
2573 2896 5.290643 CGACTTGAGCCTTCATTCTAAAGAG 59.709 44.000 0.00 0.00 32.27 2.85
2575 2898 5.171476 TCGACTTGAGCCTTCATTCTAAAG 58.829 41.667 0.00 0.00 32.27 1.85
2583 2906 0.034896 GGGTTCGACTTGAGCCTTCA 59.965 55.000 0.00 0.00 46.55 3.02
2599 2922 4.326504 CTTTGTTGATTCAAAGCAGGGT 57.673 40.909 0.00 0.00 44.57 4.34
2624 2947 1.369625 CTGTAATCCTGTCCGGTTGC 58.630 55.000 0.00 0.00 0.00 4.17
2632 2955 3.244875 TGTGGTTGATGCTGTAATCCTGT 60.245 43.478 0.00 0.00 0.00 4.00
2660 2983 4.935808 CCAGTCTACACCAATTTACAGGAC 59.064 45.833 0.00 0.00 0.00 3.85
2661 2984 4.841813 TCCAGTCTACACCAATTTACAGGA 59.158 41.667 0.00 0.00 0.00 3.86
2662 2985 5.160607 TCCAGTCTACACCAATTTACAGG 57.839 43.478 0.00 0.00 0.00 4.00
2673 3112 5.107220 CGGTAAATTGTGTTCCAGTCTACAC 60.107 44.000 0.00 0.00 43.76 2.90
2678 3117 4.062991 AGTCGGTAAATTGTGTTCCAGTC 58.937 43.478 0.00 0.00 0.00 3.51
2687 6452 2.736144 TCGCTGAGTCGGTAAATTGT 57.264 45.000 0.00 0.00 0.00 2.71
2726 6493 1.336702 GCAATGGATGGTCACGCAAAA 60.337 47.619 0.00 0.00 0.00 2.44
2731 6498 1.431488 CTCGGCAATGGATGGTCACG 61.431 60.000 0.00 0.00 0.00 4.35
2757 6524 9.659830 GTGTAATTTAATTATGTTCTTAGCGGG 57.340 33.333 0.47 0.00 0.00 6.13
2862 6629 8.914011 GCAACAAGGGGTATAAAGAAATCTAAT 58.086 33.333 0.00 0.00 0.00 1.73
2911 6678 9.677567 GTTGTGCTTAATATTCTTTTGTGAAGA 57.322 29.630 0.00 0.00 0.00 2.87
2912 6679 9.683069 AGTTGTGCTTAATATTCTTTTGTGAAG 57.317 29.630 0.00 0.00 0.00 3.02
2922 6689 4.570772 TCCGCTCAGTTGTGCTTAATATTC 59.429 41.667 0.00 0.00 32.84 1.75
2924 6691 4.122776 CTCCGCTCAGTTGTGCTTAATAT 58.877 43.478 4.87 0.00 32.84 1.28
2925 6692 3.056107 ACTCCGCTCAGTTGTGCTTAATA 60.056 43.478 4.87 0.00 32.84 0.98
2931 6698 2.320587 CCACTCCGCTCAGTTGTGC 61.321 63.158 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.